RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7836
(189 letters)
>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like:
cyclophilin-type peptidylprolyl cis- trans isomerase)
(PPIase) domain similar to Caenorhabditis elegans
cyclophilin 16. C. elegans CeCYP-16, compared to the
archetypal cyclophilin Human cyclophilin A has, a
reduced peptidylprolyl cis- trans isomerase activity, is
cyclosporin insensitive and shows an altered substrate
preference favoring, hydrophobic, acidic or amide amino
acids. Most members of this subfamily have a glutamate
residue in the active site at the position equivalent to
a tryptophan (W121 in Human cyclophilin A), which has
been shown to be important for cyclophilin binding.
Length = 171
Score = 278 bits (713), Expect = 3e-97
Identities = 107/137 (78%), Positives = 119/137 (86%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V+LKT+ GDIDIELWS+EAPKACRNF+QLC+EGYY+NTI HRVV GFI QGGDPTGTGTG
Sbjct: 8 VILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTG 67
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
GESIYG+PFKDE HSRLRF RRGLV MANAG D NGSQFFFTL ELN+KHT+FGKV
Sbjct: 68 GESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVT 127
Query: 124 GDTIYNMIKLDEIMVDH 140
GDTIYN++KL E+ D
Sbjct: 128 GDTIYNLLKLAEVETDK 144
>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like. Proteins
similar to Human cyclophilin-like peptidylprolyl cis-
trans isomerase (PPIL3). Members of this family lack a
key residue important for cyclosporin binding: the
tryptophan residue corresponding to W121 in human
hCyP-18a; most members have a histidine at this
position. The exact function of the protein is not
known.
Length = 153
Score = 180 bits (458), Expect = 1e-58
Identities = 72/133 (54%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGT 62
+V L T++GDI IEL+ + PKAC NF+ LC GYYN I HR +KGF+ Q GDPTGTG
Sbjct: 2 SVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGK 61
Query: 63 GGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
GGESI+GK F+DE L+ RG+V+MAN G + NGSQFF T A P L+ K+T+FGKV
Sbjct: 62 GGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKV 121
Query: 123 --AGDTIYNMIKL 133
+T+ + KL
Sbjct: 122 IDGFETLDTLEKL 134
>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like:
cyclophilin 2-like peptidylprolyl cis- trans isomerase
(PPIase) domain similar to Schizosaccharomyces pombe
cyp-2. These proteins bind their respective SNW
chromatin binding protein in autologous systems, in a
CsA independent manner indicating interaction with a
surface outside the PPIase active site. SNW proteins
play a basic and broad range role in signaling.
Length = 146
Score = 180 bits (457), Expect = 1e-58
Identities = 73/132 (55%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
Query: 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGG 64
L+T++G+I +EL+ APK C+NF +L GYYN TI HR++K F+ QGGDPTGTG GG
Sbjct: 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGG 60
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAG 124
SIYGK F+DEIH L+ G+++MANAG + NGSQFF TLA TP L+ KHTIFG+V+
Sbjct: 61 ASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSK 120
Query: 125 DT--IYNMIKLD 134
I NM+++
Sbjct: 121 GMKVIENMVEVQ 132
>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a WD40 domain. This group consists of several
hypothetical and putative eukaryotic and bacterial
proteins which have a cyclophilin domain and a WD40
domain. Function of the protein is not known.
Length = 148
Score = 177 bits (451), Expect = 1e-57
Identities = 67/118 (56%), Positives = 83/118 (70%)
Query: 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGG 64
++ T+ GDI I L+ EAPK NF GYYNNTI HRV+KGF+ Q GDPTG GTGG
Sbjct: 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGG 60
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
ESI+GK F+DE L+ R ++MANAG + NGSQFF T ATP L++KHT+FG+V
Sbjct: 61 ESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRV 118
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl
cis- trans isomerases. This family contains eukaryotic,
bacterial and archeal proteins which exhibit a
peptidylprolyl cis- trans isomerases activity (PPIase,
Rotamase) and in addition bind the immunosuppressive
drug cyclosporin (CsA). Immunosuppression in
vertebrates is believed to be the result of the
cyclophilin A-cyclosporin protein drug complex binding
to and inhibiting the protein-phosphatase calcineurin.
PPIase is an enzyme which accelerates protein folding by
catalyzing the cis-trans isomerization of the peptide
bonds preceding proline residues. Cyclophilins are a
diverse family in terms of function and have been
implicated in protein folding processes which depend on
catalytic /chaperone-like activities. This group
contains human cyclophilin 40, a co-chaperone of the
hsp90 chaperone system; human cyclophilin A, a
chaperone in the HIV-1 infectious process and; human
cyclophilin H, a component of the U4/U6 snRNP, whose
isomerization or chaperoning activities may play a role
in RNA splicing. .
Length = 146
Score = 177 bits (451), Expect = 1e-57
Identities = 67/131 (51%), Positives = 82/131 (62%), Gaps = 5/131 (3%)
Query: 6 LKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGGE 65
L T+ G I IEL+ EAPK NF+ L G+Y+ T HRV+ GF+ QGGDPTGTG GG
Sbjct: 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG- 60
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGD 125
S G F DE RRG ++MANAG + NGSQFF T A TP L+ KHT+FGKV
Sbjct: 61 SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKV--- 117
Query: 126 TIYNMIKLDEI 136
+ M +D+I
Sbjct: 118 -VEGMDVVDKI 127
>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type
peptidylprolyl cis- trans isomerases (cyclophilins)
having a modified RING finger domain. This group
includes the nuclear proteins, Human hCyP-60 and
Caenorhabditis elegans MOG-6 which, compared to the
archetypal cyclophilin Human cyclophilin A exhibit
reduced peptidylprolyl cis- trans isomerase activity and
lack a residue important for cyclophilin binding. Human
hCyP-60 has been shown to physically interact with the
proteinase inhibitor peptide eglin c and; C. elegans
MOG-6 to physically interact with MEP-1, a nuclear zinc
finger protein. MOG-6 has been shown to function in
germline sex determination.
Length = 159
Score = 177 bits (450), Expect = 2e-57
Identities = 70/139 (50%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L T+ GD+++EL +APKAC NF++LC +GYY+ TI HR ++ F+ QGGDPTGTG G
Sbjct: 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRG 61
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
GESI+GKPFKDE L RG+++MAN+G + NGSQFF T + L+ KHT+FG+V
Sbjct: 62 GESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVV 121
Query: 124 G--DTIYNMIKLDEIMVDH 140
G +T+ M + + D
Sbjct: 122 GGLETLEAMENVPDPGTDR 140
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl
cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans
isomerases, also known as cyclophilins, share this
domain of about 109 amino acids. Cyclophilins have been
found in all organisms studied so far and catalyze
peptidyl-prolyl isomerisation during which the peptide
bond preceding proline (the peptidyl-prolyl bond) is
stabilised in the cis conformation. Mammalian
cyclophilin A (CypA) is a major cellular target for the
immunosuppressive drug cyclosporin A (CsA). Other roles
for cyclophilins may include chaperone and cell
signalling function.
Length = 144
Score = 167 bits (424), Expect = 2e-53
Identities = 58/133 (43%), Positives = 85/133 (63%), Gaps = 9/133 (6%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
+ + T++G I IEL+ EAPK NF+ LC +G+Y+ TI HRV+ GF+ QGGDPTG GTG
Sbjct: 2 LDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGTG 61
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G+ + DE S+L+ RG ++MA +G + GSQFF TL P L+ +T+FG+V
Sbjct: 62 GK----RSIPDEFVSKLKHK-RGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRV- 115
Query: 124 GDTIYNMIKLDEI 136
+ M +++I
Sbjct: 116 ---VEGMDVVEKI 125
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) -
cyclophilin family [Posttranslational modification,
protein turnover, chaperones].
Length = 158
Score = 165 bits (419), Expect = 1e-52
Identities = 62/122 (50%), Positives = 81/122 (66%), Gaps = 6/122 (4%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGT-GT 62
V+L+T+ GDI IEL+ +APK NF+QL EG+Y+ TI HRV+ GF+ QGGDPTG GT
Sbjct: 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGT 61
Query: 63 GGESIYGKPFKDEIHSRLRFVR-RGLVAMANAG-KDDNGSQFFFTLAATPELNSKHTIFG 120
GG PFKDE + RG ++MA AG + NGSQFF T+ P L+ K+T+FG
Sbjct: 62 GGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFG 118
Query: 121 KV 122
+V
Sbjct: 119 QV 120
>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type
peptidylprolyl cis- trans isomerase domain occuring with
a C-terminal RNA recognition motif domain (RRM). This
subfamily of the cyclophilin domain family contains a
number of eukaryotic cyclophilins having the RRM domain
including the nuclear proteins: human hCyP-57,
Arabidopsis thaliana AtCYP59, Caenorhabditis elegans
CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241
protein has been shown to have a role in cell
morphogenesis.
Length = 166
Score = 142 bits (360), Expect = 2e-43
Identities = 61/127 (48%), Positives = 83/127 (65%), Gaps = 8/127 (6%)
Query: 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGG 64
LL+T++GD+ I+L++ E P AC NF++LC YYN + + V K FIAQ GDPTGTG GG
Sbjct: 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGG 60
Query: 65 ESIYGKP-------FKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLA-ATPELNSKH 116
ESIY + F+ EI L+ ++G V+M NAG + NGSQF+ TL L+ KH
Sbjct: 61 ESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKH 120
Query: 117 TIFGKVA 123
T+FG+V
Sbjct: 121 TVFGQVV 127
>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin
A, B and H-like cyclophilin-type peptidylprolyl cis-
trans isomerase (PPIase) domain. This family represents
the archetypal cystolic cyclophilin similar to human
cyclophilins A, B and H. PPIase is an enzyme which
accelerates protein folding by catalyzing the cis-trans
isomerization of the peptide bonds preceding proline
residues. These enzymes have been implicated in protein
folding processes which depend on catalytic
/chaperone-like activities. As cyclophilins, Human
hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae
Cpr1 and C. elegans Cyp-3, are inhibited by the
immunosuppressive drug cyclopsporin A (CsA). CsA binds
to the PPIase active site. Cyp-3. S. cerevisiae Cpr1
interacts with the Rpd3 - Sin3 complex and in addition
is a component of the Set3 complex. S. cerevisiae Cpr1
has also been shown to have a role in Zpr1p nuclear
transport. Human cyclophilin H associates with the
[U4/U6.U5] tri-snRNP particles of the splicesome.
Length = 164
Score = 126 bits (320), Expect = 1e-37
Identities = 57/125 (45%), Positives = 73/125 (58%), Gaps = 12/125 (9%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEG---------YYNNTIIHRVVKGFIAQGGDPT 58
G I +EL++ PK NF LC G Y + HRV+ F+ QGGD T
Sbjct: 12 EPAGRIVMELFADVVPKTAENFRALC-TGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFT 70
Query: 59 -GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
G GTGG+SIYG+ F DE + +L+ GL++MANAG + NGSQFF T TP L+ KH
Sbjct: 71 RGNGTGGKSIYGEKFPDE-NFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHV 129
Query: 118 IFGKV 122
+FGKV
Sbjct: 130 VFGKV 134
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 115 bits (290), Expect = 7e-33
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 11/125 (8%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCMEG---------YYNNTIIHRVVKGFIAQGGDPT- 58
G I EL+S PK NF LC+ +Y +I HR++ F+ QGGD T
Sbjct: 28 PAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITN 87
Query: 59 GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTI 118
GTGGESIYG+ F DE + +L+ + GL++MANAG + NGSQFF T P L+ KH +
Sbjct: 88 HNGTGGESIYGRKFTDE-NFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVV 146
Query: 119 FGKVA 123
FGKV
Sbjct: 147 FGKVI 151
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 107 bits (268), Expect = 2e-29
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 18/144 (12%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQGGD-PTG 59
G I +EL++ APK NF Q C + Y HRV+K F+ QGGD G
Sbjct: 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG 90
Query: 60 TGTGGESIYGKPFKDEIHSRLRFVRR----GLVAMANAGKDDNGSQFFFTLAATPELNSK 115
GTG SIYG F+DE F+ + GL++MAN+G + NG QFF T A L++K
Sbjct: 91 DGTGCVSIYGSKFEDE-----NFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNK 145
Query: 116 HTIFGKVAGDTIYNMIKLDEIMVD 139
H +FG+V GD + + K++ +
Sbjct: 146 HVVFGRVLGDGLLVVRKIENVATG 169
>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase
A); Provisional.
Length = 190
Score = 91.4 bits (227), Expect = 2e-23
Identities = 55/135 (40%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
VLL TS G+I++EL S++AP + +NFV G+YNNT HRV+ GF+ QGG T
Sbjct: 31 VLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ- 89
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELNSKHTIFG-K 121
+ P K+E + LR RG +AMA A KD SQFF +A L+ FG
Sbjct: 90 -QKKPNPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 147
Query: 122 VAGDTIYNMIKLDEI 136
V G + M D+I
Sbjct: 148 VFGKVVKGMDVADKI 162
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like:
cyclophilin-type A-like peptidylprolyl cis- trans
isomerase (PPIase) domain similar to the cytosolic E.
coli cyclophilin A and Streptomyces antibioticus
SanCyp18. Compared to the archetypal cyclophilin Human
cyclophilin A, these have reduced affinity for
cyclosporin A. E. coli cyclophilin A has a similar
peptidylprolyl cis- trans isomerase activity to the
human cyclophilin A. Most members of this subfamily
contain a phenylalanine residue at the position
equivalent to Human cyclophilin W121, where a tyrptophan
has been shown to be important for cyclophilin binding.
Length = 155
Score = 88.3 bits (219), Expect = 2e-22
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 5 LLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTGG 64
+TS+GDI +EL+ +AP NF+ +G+Y+NTI HRV+ GF+ QGG T
Sbjct: 1 EFQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK 60
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNG-SQFFFTLAATPELNSKHTIFG-KV 122
E+ KP K+E + L RG +AMA D+ SQFF L L+ ++ +G V
Sbjct: 61 ET--LKPIKNEAGNGLS-NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTV 117
Query: 123 AGDTIYNMIKLDEIMVDHVSTYLEY 147
G+ M +D+I ++ Y
Sbjct: 118 FGEVTEGMDVVDKIAGVETYSFGSY 142
>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase
B); Provisional.
Length = 164
Score = 65.2 bits (159), Expect = 1e-13
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V T+ GDI I+ + +AP+ +NF+ C EG+YNNTI HRV+ GF+ QGG G G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG---GFEPG 58
Query: 64 GESIYGK-PFKDEIHSRLRFVRRGLVAMANAGKDDNGS-QFFFTLAATPELN 113
+ K P K+E ++ L+ RG +AMA + + QFF + LN
Sbjct: 59 MKQKATKEPIKNEANNGLK-NTRGTLAMARTQAPHSATAQFFINVVDNDFLN 109
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like:
cyclophilin-type peptidylprolyl cis- trans isomerases
(cyclophilins) similar ot the Spinach thylakoid lumen
protein TLP40. Compared to the archetypal cyclophilin
Human cyclophilin A, these proteins have similar
peptidylprolyl cis- trans isomerase activity and reduced
affinity for cyclosporin A. Spinach TLP40 has been shown
to have a dual function as a folding catalyst and
regulator of dephosphorylation.
Length = 176
Score = 62.1 bits (151), Expect = 2e-12
Identities = 50/167 (29%), Positives = 66/167 (39%), Gaps = 36/167 (21%)
Query: 6 LKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG-- 63
T G I I L AP NFV L G+Y+ HRV GF+ Q GDP G G
Sbjct: 2 EATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFP 61
Query: 64 -------------------GESIYGKPFKDEIH----SRLRFVRRGLVAMANAGKDDNG- 99
+ +YGK ++ L F G +AMA D N
Sbjct: 62 DPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSA 121
Query: 100 -SQFFFTL-------AATPELNSKHTIFGKV-AGDTIYNMIKL-DEI 136
SQFFF L + L+ ++ +FG V G I +K+ D+I
Sbjct: 122 SSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVGDKI 168
>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional.
Length = 249
Score = 49.1 bits (117), Expect = 2e-07
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
S G P DE + R R RGL+ M + G +GS F TL +P L+ K +FGK
Sbjct: 129 NVSSTGTPIADEGY-RHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAV 187
Query: 124 GDTIYNMIKLDEIMVDHV 141
D + + KL+ + +D V
Sbjct: 188 -DDLSLLEKLESLPLDDV 204
>gnl|CDD|200516 cd11255, Sema_3G, The Sema domain, a protein interacting module, of
semaphorin 3G (Sema3G). Semaphorin 3G is identified as
a primarily endothelial cell- expressed class 3
semaphorin that controls endothelial and smooth muscle
cell functions in autocrine and paracrine manners,
respectively. It is mainly expressed in the lung and
kidney, and a little in the brain. Semaphorins are
regulatory molecules in the development of the nervous
system and in axonal guidance. They also play important
roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 474
Score = 33.7 bits (77), Expect = 0.046
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 71 PFKDEIHSRL----RFVRRGLVAMANAGKDDNGSQFFFT-LAATPELNSKHTIFGKVAGD 125
P + E RL RFV L+ NA +D++ FFFT A + I +V G
Sbjct: 163 PLRTETDQRLLHEPRFVAAHLIP-DNADRDNDKVYFFFTERATETAEDDDGAIHSRV-GR 220
Query: 126 TIYNMIKLDEIMVDHVSTYLEYRKRINYEGAGKVE 160
N ++V+ ST+++ R + G ++
Sbjct: 221 LCANDAGGQRVLVNKWSTFIKARLVCSVPGPHGIQ 255
>gnl|CDD|200514 cd11253, Sema_3E, The Sema domain, a protein interacting module, of
semaphorin 3E (Sema3E). Sema3E is a secreted molecule
implicated in axonal path finding and inhibition of
developmental and postischemic angiogenesis. It is also
highly expressed in metastatic cancer cells. Sema3E
signaling, through its high affinity functional receptor
Plexin D1, drives cancer cell invasiveness and
metastatic spreading. Sema3E is a member of the class 3
semaphorin family of proteins. Semaphorins are
regulatory molecules in the development of the nervous
system and in axonal guidance. They also play important
roles in other biological processes, such as
angiogenesis, immune regulation, respiration systems and
cancer. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. It serves as a receptor-recognition
and -binding module.
Length = 471
Score = 32.1 bits (73), Expect = 0.13
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 92 NAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLDEIMVDHVSTYLEYR 148
N DDN FFFT A H I+ +V G N ++V+ ST+L+ R
Sbjct: 188 NEDPDDNKVYFFFTEKALEAEGGNHAIYTRV-GRVCANDQGGQRMLVNKWSTFLKTR 243
>gnl|CDD|185201 PRK15301, PRK15301, hypothetical protein; Provisional.
Length = 186
Score = 27.9 bits (62), Expect = 2.3
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 86 GLVAMANAGKDDNGSQFFFTLAATPELNSK 115
G++AM N G Q FTL TP LN
Sbjct: 136 GIIAMDNNQVAS-GKQMNFTLTLTPVLNDS 164
>gnl|CDD|130528 TIGR01461, greB, transcription elongation factor GreB. The GreA
and GreB transcription elongation factors enable to
continuation of RNA transcription past template-encoded
arresting sites. Among the Proteobacteria, distinct
clades of GreA and GreB are found. GreB differs
functionally in that it releases larger
oligonucleotides. This model describes proteobacterial
GreB [Transcription, Transcription factors].
Length = 156
Score = 26.4 bits (58), Expect = 7.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAM 90
+ YGK EI R+RF+ + L +
Sbjct: 45 ADYQYGKKRLREIDRRVRFLTKRLENL 71
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
Provisional.
Length = 526
Score = 26.6 bits (60), Expect = 8.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 163 ERAANIGVTLYNTNTILSEIECLDFI 188
ERAA +GV L + + +L+ DFI
Sbjct: 176 ERAAQLGVELVSLDELLARA---DFI 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,896,025
Number of extensions: 932011
Number of successful extensions: 689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 27
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)