RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7836
(189 letters)
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 261 bits (668), Expect = 3e-90
Identities = 107/136 (78%), Positives = 119/136 (87%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
VLLKT+ GDIDIELWS+EAPKACRNF+QLC+E YY+NTI HRVV GFI QGGDPTGTG+G
Sbjct: 27 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSG 86
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
GESIYG PFKDE HSRLRF RRGLVAMANAG DNGSQFFFTL ELN+KHTIFGKV
Sbjct: 87 GESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT 146
Query: 124 GDTIYNMIKLDEIMVD 139
GDT+YNM++L E+ +D
Sbjct: 147 GDTVYNMLRLSEVDID 162
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 246 bits (631), Expect = 5e-85
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGT 62
+V L T VGDI IE++ PK C NF+ LC YYN I HR +KGF+ Q GDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 63 GGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
GG SI+GK F+DE L+ RG+V+MAN G + NGSQFF T P L+ K+T+FGKV
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 123 AGDTIYNMIKLDEIMVD 139
D + + +L+++ V+
Sbjct: 122 I-DGLETLDELEKLPVN 137
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 247 bits (632), Expect = 8e-85
Identities = 69/142 (48%), Positives = 95/142 (66%), Gaps = 5/142 (3%)
Query: 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTG 61
Q V + T+ GD+ EL+ + PKAC+NF+ L GYY NTI H+ +KGFI QGGDPTGTG
Sbjct: 17 QGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTG 76
Query: 62 TGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGK----DDNGSQFFFTLAATPELNSKHT 117
GGESIYG+ F DEI+ L++ RRG+++MA+ G + NGSQFF T ++ P+LN ++
Sbjct: 77 KGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYV 136
Query: 118 IFGKVAGDTIYNMIKLDEIMVD 139
IFGK+ D + L+ D
Sbjct: 137 IFGKLI-DGFETLNTLENCPSD 157
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 246 bits (630), Expect = 3e-84
Identities = 61/136 (44%), Positives = 90/136 (66%), Gaps = 1/136 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
+ + T++GD ++EL+ +PK C NF LC G+Y+NTI HRV+ F+ QGGDPTGTG G
Sbjct: 41 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 100
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G+SIYG+ F+DEI+ L+ G+++M+N G + N SQFF TLA P L+ KHTIF +V+
Sbjct: 101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 124 GDTIYNMIKLDEIMVD 139
+ + + +
Sbjct: 161 -KNMTCIENIASVQTT 175
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 244 bits (624), Expect = 2e-83
Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L T+ GD+++EL PK C NF++LC + YY+ TI HR ++ F+ QGGDPTGTGTG
Sbjct: 22 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
GES +GKPFKDE L RG+++MAN+G + N SQFF T + L+ KHTIFG+V
Sbjct: 82 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 141
Query: 124 GDTIYNMIKLDEIMVD 139
G + ++ + D
Sbjct: 142 GG-FDVLTAMENVESD 156
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 245 bits (627), Expect = 2e-83
Identities = 84/152 (55%), Positives = 104/152 (68%), Gaps = 16/152 (10%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V+L TS+GD+D+ELW+RE P ACRNFVQLC+EGYY NTI HRVVK FI QGGDPTGTG G
Sbjct: 24 VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 64 G--ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDD--------------NGSQFFFTLA 107
G + GKPF E H RL+F RGLV +AN G+ NG+QFF TLA
Sbjct: 84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 108 ATPELNSKHTIFGKVAGDTIYNMIKLDEIMVD 139
LN+ +T+FGKV G T+YN++K +++ V
Sbjct: 144 RADVLNNAYTLFGKVTGHTLYNLMKFNDLEVG 175
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 242 bits (621), Expect = 2e-83
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 1/129 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ QGGDPTGTG G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 124 -GDTIYNMI 131
G + N +
Sbjct: 134 QGIGMVNRV 142
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 242 bits (620), Expect = 1e-82
Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 1/129 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ QGGDPTGTG G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 124 -GDTIYNMI 131
G + N +
Sbjct: 134 QGIGMVNRV 142
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 236 bits (605), Expect = 2e-80
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 13/148 (8%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGG-----DPT 58
+ + T+ G ++IEL + AP+AC +F++LC Y+++TI HR ++ F+ QGG P+
Sbjct: 9 LRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPS 68
Query: 59 GTGTGGESIY-------GKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPE 111
+S G PF+DE +RL G+++MAN GK N S+FF T +
Sbjct: 69 KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEH 128
Query: 112 LNSKHTIFGKVAGDTIYNMIKLDEIMVD 139
LN+KHTIFG+V G + + + +++ D
Sbjct: 129 LNNKHTIFGRVVGG-LDVLRQWEKLETD 155
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 232 bits (595), Expect = 1e-79
Identities = 59/131 (45%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTG 61
++ ++ T++GDI I L+ +E K +NF + GYYNN I HRV+K F+ Q GDP+G G
Sbjct: 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 65
Query: 62 TGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK 121
TGGESI+G F+DE L + +V+MAN G + NGSQFF T P L+ KHT+FGK
Sbjct: 66 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 125
Query: 122 VAG--DTIYNM 130
V + ++
Sbjct: 126 VTQGSKIVLDI 136
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 224 bits (574), Expect = 4e-76
Identities = 63/129 (48%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
++ TS+GDI +L+ E PK NF GYYN HR++KGF+ Q GDPTGTG G
Sbjct: 24 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
GESI+G F+DE HS LR R ++MANAG + NGSQFF T+ TP L++KHT+FG+V
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 124 G--DTIYNM 130
+ + +
Sbjct: 144 KGMEVVQRI 152
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 185 bits (472), Expect = 2e-60
Identities = 62/137 (45%), Positives = 76/137 (55%), Gaps = 18/137 (13%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEG---------------YYNNTIIHRVVK 48
L T+ GDI I L+ APK NFV L +Y+ + HRV++
Sbjct: 26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 49 GFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAA 108
GF+ QGGDPTGTG GG G F DE H L+F + L+AMANAG NGSQFF T+
Sbjct: 86 GFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 142
Query: 109 TPELNSKHTIFGKVAGD 125
TP LN +HTIFG+V
Sbjct: 143 TPHLNRRHTIFGEVIDA 159
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 139 bits (354), Expect = 1e-42
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC-----------MEGYYNNTIIHRVVKGFIAQGGDPT 58
G + EL+S PK C NF LC +Y + + HRVVK F+ QGGD +
Sbjct: 23 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 59 -GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
G G GGESIYG F+DE ++ + L++MAN GKD NGSQFF T TP L+ H
Sbjct: 83 EGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHV 141
Query: 118 IFGKV 122
+FG+V
Sbjct: 142 VFGQV 146
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 139 bits (354), Expect = 1e-42
Identities = 55/125 (44%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC-----------MEGYYNNTIIHRVVKGFIAQGGDPT 58
G I +EL++ AP+ C NF+ LC +Y + HRV+K F+ QGGD T
Sbjct: 20 AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79
Query: 59 -GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
G GTGGESIYG F DE ++ +V+MAN G + NGSQFF T P LN+ H
Sbjct: 80 KGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHV 138
Query: 118 IFGKV 122
+FGKV
Sbjct: 139 VFGKV 143
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 140 bits (355), Expect = 1e-42
Identities = 57/125 (45%), Positives = 71/125 (56%), Gaps = 13/125 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC-----------MEGYYNNTIIHRVVKGFIAQGGDPT 58
VG I +L+S PK C+NF+ LC + Y + HRVVK F+ QGGD +
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 59 -GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
G G GGESIYG FKDE + L+ R L++MAN GK NGSQFF T P L+ H
Sbjct: 93 EGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHV 151
Query: 118 IFGKV 122
+FG V
Sbjct: 152 VFGLV 156
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 137 bits (347), Expect = 1e-41
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L T+ G I +EL +APK NF+ +G+Y+ TI HRV+ GF+ QGG
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELNSK------- 115
+ P +E ++ L+ +AMA +QFF + LN
Sbjct: 66 KPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 116 -HTIFGKV 122
+ +FGKV
Sbjct: 123 GYAVFGKV 130
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 142 bits (360), Expect = 1e-41
Identities = 53/125 (42%), Positives = 73/125 (58%), Gaps = 13/125 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM-----------EGYYNNTIIHRVVKGFIAQGGDPT 58
VG I +EL++ PK NF LC ++ HR++K F+ QGGD +
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 59 -GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
GTGGESIYG+ F+DE + + + GL++MANAG + NGSQFF T TP L+ KH
Sbjct: 89 NQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHV 147
Query: 118 IFGKV 122
+FG+V
Sbjct: 148 VFGQV 152
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 136 bits (346), Expect = 1e-41
Identities = 52/122 (42%), Positives = 68/122 (55%), Gaps = 10/122 (8%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC--------MEGYYNNTIIHRVVKGFIAQGGDPT-GT 60
VG + IEL++ PK NF Q C + Y + HRV+K F+ QGGD G
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 61 GTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFG 120
GTG SIY PF DE + +LR GL++MAN+G NG QFF T + L+ KH +FG
Sbjct: 84 GTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 121 KV 122
K+
Sbjct: 143 KI 144
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 136 bits (345), Expect = 2e-41
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V T+ GDI I+ + +AP+ +NF+ C EG+YNNTI HRV+ GF+ QGG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELNSK------- 115
+ +P K+E ++ L+ RG +AMA +QFF + LN
Sbjct: 62 KAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 116 -HTIFGKV 122
+ +F +V
Sbjct: 119 GYCVFAEV 126
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 138 bits (349), Expect = 3e-41
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 10/122 (8%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC--------MEGYYNNTIIHRVVKGFIAQGGDPT-GT 60
+G EL+ PK NF Q C + Y NTI HRV+K F+ QGGD
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 61 GTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFG 120
G+G SIYG+ F DE + ++ + GL++MAN+G + NG QFF T L+ K+ +FG
Sbjct: 133 GSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFG 191
Query: 121 KV 122
++
Sbjct: 192 RI 193
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 134 bits (340), Expect = 2e-40
Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
VG + L+ + PK NFV L +G+ Y N+ HRV+K F+ QGGD T G GTGG+
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +L+ G V+MANAGKD NGSQFF T T L+ KH +FGKV
Sbjct: 89 SIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 144
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 133 bits (338), Expect = 2e-40
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 12/120 (10%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
+G I I L+ ++AP NF QLC G+ Y ++I HRV++ F+ QGGD T GTGG+
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 66 SIYGKPFKDEIHSRLRFVRR---GLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + G ++MANAG + NGSQFF T A TP L+ +H +FGKV
Sbjct: 85 SIYGEKFADE-----NLNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKV 139
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 133 bits (336), Expect = 4e-40
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 9/125 (7%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
VLL TS G+I++EL ++AP + +NFV G+YNNT HRV+ GF+ QGG T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMA-NAGKDDNGSQFFFTLAATPELN-----SKHT 117
+ P K+E + LR RG +AMA A KD SQFF +A L+ +
Sbjct: 67 KKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123
Query: 118 IFGKV 122
+FGKV
Sbjct: 124 VFGKV 128
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 133 bits (337), Expect = 5e-40
Identities = 52/124 (41%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC----------MEGYYNNTIIHRVVKGFIAQGGDPT- 58
G I +EL++ + P NF LC Y + HR++ F+ QGGD T
Sbjct: 33 AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTR 92
Query: 59 GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTI 118
G GTGGESIYG F+DE + L++MANAG + NGSQFF T P L+ KH +
Sbjct: 93 GDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVV 151
Query: 119 FGKV 122
FGKV
Sbjct: 152 FGKV 155
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 132 bits (334), Expect = 1e-39
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 12/124 (9%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC----------MEGYYNNTIIHRVVKGFIAQGGDPT- 58
G I +EL+ PK NF LC ++ + HR++ F+ QGGD T
Sbjct: 17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 59 GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTI 118
G GTGGESIYG+ F DE + + + G+++MANAG + NGSQFF T L+ KH +
Sbjct: 77 GNGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVV 135
Query: 119 FGKV 122
FG+V
Sbjct: 136 FGRV 139
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 131 bits (333), Expect = 1e-39
Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 11/124 (8%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLC--------MEGY-YNNTIIHRVVKGFIAQGGDPT- 58
+ G I EL+S P+ C NF LC + Y N+I HR++ F+ QGGD T
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN 75
Query: 59 GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTI 118
G G+GGESIYG+ F DE + ++ + GL++MANAG + N SQFF TL P L+ KH +
Sbjct: 76 GNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVV 134
Query: 119 FGKV 122
FGKV
Sbjct: 135 FGKV 138
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 132 bits (334), Expect = 2e-39
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
+G I ++L PK +NF LC +G Y + HR++ GF+ QGGD T GTGG
Sbjct: 41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + L+ + G+++MAN G NGSQFF TL T L+ KH +FG+V
Sbjct: 101 SIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEV 156
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 131 bits (332), Expect = 2e-39
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
G I +EL S P+ NF LC G+ Y+N HRV+ F+ QGGD G GTGG+
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +LR G+++MAN+G + NGSQFF L+ KH +FG+V
Sbjct: 84 SIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRV 139
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 131 bits (331), Expect = 2e-39
Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 9 SVGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGG 64
VG I L+ ++ PK +NF +LC G Y + HR++ F+ QGGD T G GTGG
Sbjct: 20 KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG 79
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAG 124
SIYG F DE + + ++G+++MANAG + NGSQFF T A T L+ KH +FG+VA
Sbjct: 80 RSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVAD 138
Query: 125 DTIYNMIK 132
+ Y+++K
Sbjct: 139 EKSYSVVK 146
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 130 bits (330), Expect = 4e-39
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
G I + L S P NF LC +G+ + + HR++ F+ QGGD T GTGG+
Sbjct: 25 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYGK F DE + L+ GL++MAN+G + NGSQFF T T L+ KH +FG+V
Sbjct: 85 SIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEV 140
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 130 bits (329), Expect = 4e-39
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
G I +L+ PK +NF +L G+ Y ++I HRV+ F+ QGGD T GTGG+
Sbjct: 16 EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F DE + +++ + GL++MANAG + NGSQFF T T L+ KH +FG+V
Sbjct: 76 SIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEV 131
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 131 bits (331), Expect = 4e-39
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
+G + EL++ + PK NF L +G+ Y + HR++ GF+ QGGD T GTGG+
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG+ F+DE + L+ G+++MANAG + NGSQFF A T L+ KH +FGKV
Sbjct: 96 SIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV 151
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 129 bits (328), Expect = 6e-39
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 5/117 (4%)
Query: 10 VGDIDIELWSREAPKACRNFVQLCM--EGY-YNNTIIHRVVKGFIAQGGDPT-GTGTGGE 65
+G + +EL + PK NF LC +G+ Y + HRV+ F+ Q GD T GTGG+
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 66 SIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
SIYG F DE + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 77 SIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 132
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 124 bits (313), Expect = 7e-36
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 33/146 (22%)
Query: 10 VGDIDIELWSREAPKACRNFVQLC--------------------MEGYYNNTIIHRVVKG 49
+G + I+L+ P NFVQL + Y H V+
Sbjct: 28 IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87
Query: 50 FIAQGGDPT-GTGTGGESIYGKPFKDEIHS--RLRFVRRGLVAMA----NAGKDDNGSQF 102
GD G+ ++Y + +GL+++ +G S F
Sbjct: 88 NYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTF 147
Query: 103 FFTL------AATPELNSKHTIFGKV 122
TL EL+ + G+V
Sbjct: 148 MITLDDIRPSNVLDELDRDQVVIGQV 173
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 127 bits (321), Expect = 7e-36
Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 37/188 (19%)
Query: 6 LKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG-- 63
I L AP NFV L +Y+ I R GF+ Q GDP G G
Sbjct: 183 PNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGFI 241
Query: 64 -------------------GESIYGKPFKD----EIHSRLRFVRRGLVAMANAGKDDN-- 98
YG ++ + + F G +AMA +++
Sbjct: 242 DPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSG 301
Query: 99 GSQFFF-------TLAATPELNSKHTIFGKV-AGDTIYNMIKL-DEIMVDHVSTYLEYRK 149
SQ F+ T + + L+ ++ +FG V + +K+ D I V + LE
Sbjct: 302 SSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLA 361
Query: 150 RINYEGAG 157
+Y+ AG
Sbjct: 362 NPSYKIAG 369
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 29.4 bits (66), Expect = 0.60
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 100 SQFFFTLAATPELNSKHTIFGKVAGDTI 127
T + IF K+ T
Sbjct: 15 EVKPETHINLKVSDGSSEIFFKIKKTTP 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,026,986
Number of extensions: 180402
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 41
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)