RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7836
(189 letters)
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 134 bits (339), Expect = 3e-41
Identities = 74/130 (56%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L+TS+G I +EL+ + APK C+NF +L GYYN T HR++K F+ QGGDPTGTG G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV- 122
G SIYGK F+DE+H L+F G++AMANAG D NGSQFF TLA T L+ KHTIFG+V
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133
Query: 123 AGDTIYNMIK 132
G + N +
Sbjct: 134 QGIGMVNRVG 143
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 132 bits (334), Expect = 3e-40
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V L T+ GD+++EL PK C NF++LC + YY+ TI HR ++ F+ QGGDPTGTGTG
Sbjct: 3 VRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTG 62
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK-V 122
GES +GKPFKDE L RG+++MAN+G + N SQFF T + L+ KHTIFG+ V
Sbjct: 63 GESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVV 122
Query: 123 AGDTIYNMIK 132
G + ++
Sbjct: 123 GGFDVLTAME 132
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 114 bits (287), Expect = 2e-33
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 3 AVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGT 62
+V L T VGDI IE++ PK C NF+ LC YYN I HR +KGF+ Q GDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 63 GGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
GG SI+GK F+DE L+ RG+V+MAN G + NGSQFF T P L+ K+T+FGKV
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 123 AGDTIYNMIKLDEIMVD 139
D + + +L+++ V+
Sbjct: 122 -IDGLETLDELEKLPVN 137
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 107 bits (268), Expect = 1e-30
Identities = 56/133 (42%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCM---EGYYNNTIIHRVVKGFIAQGGDPT-GTGTG 63
+G I +L+ PK NF LC Y + HRV+ F+ QGGD T G GTG
Sbjct: 13 APLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTG 72
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G+SIYG F DE + +L+ + GL++MANAG + NGSQFF T T L+ KH +FG+V
Sbjct: 73 GKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEV- 130
Query: 124 GDTIYNMIKLDEI 136
I M + I
Sbjct: 131 ---IDGMNVVKAI 140
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 106 bits (266), Expect = 3e-30
Identities = 64/133 (48%), Positives = 90/133 (67%), Gaps = 4/133 (3%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
+ + T++GD ++EL+ +PK C NF LC G+Y+NTI HRV+ F+ QGGDPTGTG G
Sbjct: 19 ITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKG 78
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVA 123
G+SIYG+ F+DEI+ L+ G+++M+N G + N SQFF TLA P L+ KHTIF +V
Sbjct: 79 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARV- 137
Query: 124 GDTIYNMIKLDEI 136
NM ++ I
Sbjct: 138 ---SKNMTCIENI 147
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 104 bits (260), Expect = 1e-29
Identities = 59/121 (48%), Positives = 80/121 (66%)
Query: 2 QAVLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTG 61
++ ++ T++GDI I L+ +E K +NF + GYYNN I HRV+K F+ Q GDP+G G
Sbjct: 2 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 61
Query: 62 TGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK 121
TGGESI+G F+DE L + +V+MAN G + NGSQFF T P L+ KHT+FGK
Sbjct: 62 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGK 121
Query: 122 V 122
V
Sbjct: 122 V 122
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 104 bits (261), Expect = 2e-29
Identities = 61/144 (42%), Positives = 78/144 (54%), Gaps = 18/144 (12%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEG---------------YYNNTIIHRVVK 48
L T+ GDI I L+ APK NFV L +Y+ + HRV++
Sbjct: 6 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 65
Query: 49 GFIAQGGDPTGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAA 108
GF+ QGGDPTGTG GG F DE H L+F + L+AMANAG NGSQFF T+
Sbjct: 66 GFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGK 122
Query: 109 TPELNSKHTIFGKVAGDTIYNMIK 132
TP LN +HTIFG+V +++
Sbjct: 123 TPHLNRRHTIFGEVIDAESQRVVE 146
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 100 bits (250), Expect = 7e-28
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 6 LKTSVGDIDIELWSREAPKACRNFVQLCMEGY---YNNTIIHRVVKGFIAQGGDP-TGTG 61
+T VG I L+ ++ PK +NF +LC Y + HR++ F+ QGGD G G
Sbjct: 16 AETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNG 75
Query: 62 TGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK 121
TGG SIYG F DE S + ++G+++MANAG + NGSQFF T A T L+ KH +FG+
Sbjct: 76 TGGRSIYGDKFADENFS-RKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGE 134
Query: 122 VAGDTIYNMIK 132
VA + Y+++K
Sbjct: 135 VADEKSYSVVK 145
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 100 bits (249), Expect = 1e-27
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 11/125 (8%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCM---------EGYYNNTIIHRVVKGFIAQGGDP- 57
++ G I EL+S P+ C NF LC +Y N+I HR++ F+ QGGD
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 58 TGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHT 117
G G+GGESIYG+ F D + ++ + GL++MANAG + N SQFF TL P L+ KH
Sbjct: 75 NGNGSGGESIYGRSFTD-ENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHV 133
Query: 118 IFGKV 122
+FGKV
Sbjct: 134 VFGKV 138
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 99.5 bits (247), Expect = 2e-27
Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCM----------EGYYNNTIIHRVVKGFIAQGGDP 57
+ G I +EL+ PK NF LC ++ + HR++ F+ QGGD
Sbjct: 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74
Query: 58 -TGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKH 116
G GTGGESIYG+ F DE + G+++MANAG + NGSQFF T L+ KH
Sbjct: 75 TRGNGTGGESIYGEKFPDENFK-EKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKH 133
Query: 117 TIFGKV 122
+FG+V
Sbjct: 134 VVFGRV 139
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 96.0 bits (238), Expect = 6e-26
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCM-----------EGYYNNTIIHRVVKGFIAQGGD 56
G I +EL++ AP+ C NF+ LC +Y + HRV+K F+ QGGD
Sbjct: 15 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGD 74
Query: 57 PT-GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSK 115
T G GTGGESIYG D+ ++ +V+MAN G + NGSQFF T P LN+
Sbjct: 75 FTKGDGTGGESIYG-GMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNI 133
Query: 116 HTIFGKV 122
H +FGKV
Sbjct: 134 HVVFGKV 140
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 94.9 bits (235), Expect = 2e-25
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCM-----------EGYYNNTIIHRVVKGFIAQGGD 56
VG I +EL++ PK NF LC ++ HR++K F+ QGGD
Sbjct: 26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD 85
Query: 57 -PTGTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSK 115
GTGGESIYG+ F+DE + + GL++MANAG + NGSQFF T TP L+ K
Sbjct: 86 FSNQNGTGGESIYGEKFEDENFH-YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGK 144
Query: 116 HTIFGKV 122
H +FG+V
Sbjct: 145 HVVFGQV 151
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 93.5 bits (231), Expect = 5e-25
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
++ TS+GDI +L+ E PK NF GYYN HR++KGF+ Q GDPTGTG G
Sbjct: 12 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 71
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK-V 122
GESI+G F+DE HS LR R ++MANAG + NGSQFF T+ TP L++KHT+FG+
Sbjct: 72 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 131
Query: 123 AGDTIYNMIK 132
G + I
Sbjct: 132 KGMEVVQRIS 141
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 93.4 bits (231), Expect = 6e-25
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLC---MEGYYNNTIIHRVVKGFIAQGGDPT-GTGTG 63
+G I I L+ + PK NF++L Y + HRV+ F+ QGGD T G GTG
Sbjct: 18 KPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTG 77
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
G SIYG+ F D + +L+ G ++MANAG D NGSQFF T TP L+ +H +FGK+
Sbjct: 78 GRSIYGEKFAD-ENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKI 135
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 93.0 bits (230), Expect = 1e-24
Identities = 61/130 (46%), Positives = 73/130 (56%), Gaps = 6/130 (4%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLC---MEGYYNNTIIHRVVKGFIAQGGDPT-GTGTG 63
VG I I L+ PK NFV L Y +I HRV+K F+ QGGD T GTG
Sbjct: 19 KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTG 78
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV- 122
G SIYG+ F DE L+ G V+MANAG D NGSQFF TL L+ KH +FGKV
Sbjct: 79 GMSIYGETFPDENFK-LKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVL 137
Query: 123 AGDTIYNMIK 132
G T+ + I+
Sbjct: 138 DGMTVVHSIE 147
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 91.1 bits (225), Expect = 3e-24
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
V T+ GDI I+ + +AP+ +NF+ C EG+YNNTI HRV+ GF+ QGG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLA--------ATPELNSK 115
+P K+E ++ L+ R L +QFF +
Sbjct: 62 K--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119
Query: 116 HTIFGKVAGDTIYNMIKLDEI 136
+ +F +V + M ++D+I
Sbjct: 120 YCVFAEV----VDGMDEVDKI 136
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 89.6 bits (221), Expect = 1e-23
Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 4 VLLKTSVGDIDIELWSREAPKACRNFVQLCMEGYYNNTIIHRVVKGFIAQGGDPTGTGTG 63
VLL TS G+I++EL ++AP + +NFV G+YNNT HRV+ GF+ QGG T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGK-V 122
P K+E + LR R + A KD SQFF +A L+ FG V
Sbjct: 67 K--KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124
Query: 123 AGDTIYNMIKLDEI 136
G + M D+I
Sbjct: 125 FGKVVKGMDVADKI 138
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 87.6 bits (216), Expect = 8e-23
Identities = 56/119 (47%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEGY---YNNTIIHRVVKGFIAQGGDPT-GTGTG 63
VG + I L+ + PK NF QL Y +I HRV++ F+ QGGD T GTG
Sbjct: 17 EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTG 76
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
G+SIYG F DE F G V+MANAG + NGSQFF T A TP L+ +H +FGKV
Sbjct: 77 GKSIYGTRFDDENLKIKHF--VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKV 133
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 86.1 bits (212), Expect = 3e-22
Identities = 48/119 (40%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEGY---YNNTIIHRVVKGFIAQGGD-PTGTGTG 63
+G + +EL + PK NF LC Y + HRV+ F+ Q GD GTG
Sbjct: 14 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTG 73
Query: 64 GESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKV 122
G+SIYG F D + L+ V G+++MANAG + NGSQFF T L+ KH +FG V
Sbjct: 74 GKSIYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 131
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 84.2 bits (207), Expect = 3e-21
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQGGDPTG 59
+G EL+ PK NF Q C Y Y NTI HRV+K F+ QGGD
Sbjct: 28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFIN 87
Query: 60 TGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIF 119
G D+ + ++ + GL++MAN+G + NG QFF T L+ K+ +F
Sbjct: 88 HNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVF 147
Query: 120 GKV-AGDTIYNMIKLDEIMVD 139
G++ D++ + K++ + V
Sbjct: 148 GRIIDNDSLLLLKKIENVSVT 168
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 82.2 bits (202), Expect = 1e-20
Identities = 52/138 (37%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLCMEGY--------YNNTIIHRVVKGFIAQGGDPT- 58
VG + IEL++ PK NF Q C + Y + HRV+K F+ QGGD
Sbjct: 18 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVN 77
Query: 59 GTGTGGESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTI 118
G GTG SIY PF DE GL++MAN+G NG QFF T + L+ KH +
Sbjct: 78 GDGTGVASIYRGPFADENFKLRHS-APGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV 136
Query: 119 FGKVAGDTIYNMIKLDEI 136
FGK+ I ++ + +I
Sbjct: 137 FGKI----IDGLLVMRKI 150
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 81.1 bits (199), Expect = 3e-20
Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Query: 8 TSVGDIDIELWSREAPKACRNFVQLC---MEGYYNNTIIHRVVKGFIAQGGDPTGTGTGG 64
G I + L S P NF LC + + HR++ F+ QGGD T G
Sbjct: 13 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG 72
Query: 65 ESIYGKPFKDEIHSRLRFVRRGLVAMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAG 124
D+ + L+ GL++MAN+G + NGSQFF T T L+ KH +FG+V
Sbjct: 73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEV-- 130
Query: 125 DTIYNMIKLDEI 136
+ L +I
Sbjct: 131 --TEGLDVLRQI 140
>d1nvmb2 d.81.1.1 (B:132-286) Acetaldehyde dehydrogenase (acylating)
{Pseudomonas sp. [TaxId: 306]}
Length = 155
Score = 27.1 bits (60), Expect = 1.1
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 89 AMANAGKDDNGSQFFFTLAATPELNSKHTIFGKVAGDTIYNMIKLDEIMVDHVSTYLE-Y 147
A+ G G A P L + T++ A + MV V Y+ Y
Sbjct: 51 AIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAVQAYVPGY 110
Query: 148 RKR 150
R +
Sbjct: 111 RLK 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.415
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 733,275
Number of extensions: 33531
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 24
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)