BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7837
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 86/160 (53%), Gaps = 7/160 (4%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
+ L G+K LD+GSGSG L+A FA M KV I+H+K L ++ N+R+ P +
Sbjct: 71 LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 130
Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMT 241
+ + V DGR GY + APYD I++ A +P ++DQLK GGR++ G
Sbjct: 131 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQM 190
Query: 242 LELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYN 281
LE DK +GS+K + +Y+ L D+++ + +
Sbjct: 191 LEQYDKLQDGSIKMKPLMGVIYV----PLTDKEKQWSRWK 226
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 36 LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
+D P +IG A + +P H LELL L G K L++G+GSG LT F MVG +GKV
Sbjct: 46 MDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKV 105
Query: 96 YTIEHIPELLE 106
I+HI EL++
Sbjct: 106 IGIDHIKELVD 116
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 8/145 (5%)
Query: 128 HLVYGSKVLDIGSGSGYLSALF-AYMGAK-------VYAIEHVKNLCKRAMKNIRRGAPA 179
HL G+++LD+GSGSGYL+A F Y+ AK + IEH L +R+ N+ +
Sbjct: 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140
Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDI 239
+ + V DGR+GYP APY+ I++ A D P +++QL GGR++ G +
Sbjct: 141 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS 200
Query: 240 MTLELLDKFVNGSVKTTVIHPHVYI 264
++ DK NG V+ T + +Y+
Sbjct: 201 QYMQQYDKDANGKVEMTRLMGVMYV 225
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 36 LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG-- 93
+D P IG + +P H LE L HLK G ++L++G+GSGYLT F + G
Sbjct: 53 MDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVD 112
Query: 94 ---KVYTIEHIPELLE 106
++ IEH EL+
Sbjct: 113 ADTRIVGIEHQAELVR 128
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 8/102 (7%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G +VL+IG G+GY +A+ + +G K V ++E+ + +C+ A +N+ R EN F
Sbjct: 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-----IENVIF 130
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
VC DG G P+ +PYDVI+++ + ++P QLK GGR++
Sbjct: 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVI 172
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLE 106
PS L +E + L G +VLEIG G+GY + +VG G V ++E+ ++ E
Sbjct: 60 QPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICE 114
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 127 GHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
+L G +L++G+GSG+ +AL + + VY IE + L + A +N+ R A +N
Sbjct: 87 ANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKN 141
Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
+ DG +G+P APYDVI ++ IP +++QLK+GG+++
Sbjct: 142 VHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLII 187
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 8/107 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK---VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G KVL+IG+G GY +A+ A + + V +IE + L ++A + +R+ +N
Sbjct: 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-----YDNVIV 132
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235
+ DG GY APYD IY + A IP ++ QLK GG++L G
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGR 179
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 36 LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
+D P IG+ + + ++ ELL LK G KVLEIGTG GY + +VG G V
Sbjct: 48 VDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLV 105
Query: 96 YTIEHIPELLE 106
+IE IPEL E
Sbjct: 106 VSIERIPELAE 116
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL---CKRAMKNIRRG 176
+ R+ L S+VL+IG+GSGY +A+ A++ V ++E +K L +R +KN+
Sbjct: 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD-- 123
Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
N DG +G+ AP+D I ++ A +IP ++ QL GG ++ G E
Sbjct: 124 ------LHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEE 177
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV 89
+I IG + P + ELL L +VLEIGTGSGY T + +V
Sbjct: 49 NIALPIGQGQTISQPYMVARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLV 99
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 132 GSKVLDIGSGSGYLSALFAY-------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
GS+ +D+GSGSGYL+ A + V +E VK+L +++NI+R P + +
Sbjct: 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID 140
Query: 185 NFEFVCAD----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
NF+ + + + +D I++ + ++P +VD L G+++
Sbjct: 141 NFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLII 191
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 36 LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI 91
+D P I H + +P H L L+ L LK G + +++G+GSGYLT + +
Sbjct: 49 IDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNV 104
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G KVL+IG+G GY +AL A + KV ++E + A K ++ N + +
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKXYNYASK-------LLSYYNNIKLILG 123
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGG 227
DG GY + PYD + + + +QLK GG
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGG 159
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
G KVLEIGTG GY T L +V KV ++E
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVE 99
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192
+VL+ G+GSG L A+ + + +V+ E V+ K A KN+++ L +N +F D
Sbjct: 93 KRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKK----FNLGKNVKFFNVD 148
Query: 193 GRRGYPDAAPYDVIYISQAIRDI--PWHIVDQL 223
+ DA + I+ A D+ PWH ++++
Sbjct: 149 ----FKDAEVPEGIF-HAAFVDVREPWHYLEKV 176
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
L +L +VLE GTGSG L + ++G+V+T E + E
Sbjct: 85 LKLNLNKEKRVLEFGTGSG---ALLAVLSEVAGEVWTFEAVEEF 125
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 34 TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
+L+D N+ + P D + +L +K GD++++ G GSG + + VG SG
Sbjct: 81 SLIDEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSG 138
Query: 94 KVYTIEHIPEL 104
KV+ E E
Sbjct: 139 KVFAYEKREEF 149
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 21/179 (11%)
Query: 101 IPELLEXXXXXXXXXXETYIKRINFYGHLV---YGSKVLDIGSGSGYLSALFAYM---GA 154
IP L++ Y K +F ++ G +++D G GSG + A+ A
Sbjct: 79 IPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSG 138
Query: 155 KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214
KV+A E + K A N+ + L E D G+ D D +++ + D
Sbjct: 139 KVFAYEKREEFAKLAESNLTKW----GLIERVTIKVRDISEGF-DEKDVDALFLD--VPD 191
Query: 215 IPWHIVDQ----LKLGGRMLFIKGHEDDIM-TLELLDK--FVNGSVKTTVIHPHVYIHE 266
PW+ +D+ LK GGR + + + TL+ L + F+ V ++ P+ + E
Sbjct: 192 -PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVPE 249
>pdb|3OPN|A Chain A, The Crystal Structure Of A Putative Hemolysin From
Lactococcus Lactis
Length = 232
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
+ G LDIGS +G + + GAK VYA++ N +++ R + + E F F
Sbjct: 36 INGKTCLDIGSSTGGFTDVXLQNGAKLVYALDVGTNQLAWKIRSDER----VVVXEQFNF 91
Query: 189 ---VCADGRRGYPDAAPYDVIYIS 209
V AD +G P DV +IS
Sbjct: 92 RNAVLADFEQGRPSFTSIDVSFIS 115
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
LK G VL++GTG+G+ MVG GKVY I+ E++
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMV 75
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 129 LVYGSKVLDIGSGSG----YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
L G VLD+G+G+G YLS + G KVYAI+ + + A + + +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKG-KVYAIDVQEEMVNYAWEKVNK 84
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 123 INFYGHLVYGSKVLDIGSGSGYL--SALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAI 180
I F G++V+D+G+GSG + S A G V A++ + A +N R +
Sbjct: 22 IRFLKRXPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSXDALAVARRNAERFGAVV 81
Query: 181 --ALAENFEFVCADGRRGYP 198
A A+ E++ RG P
Sbjct: 82 DWAAADGIEWLIERAERGRP 101
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
L L+ L+ HL+ GDKVL++GTGSG L A + GK ++ P +L
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVLAI---AAEKLGGKALGVDIDPMVL 155
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
HL G KVLD+G+GSG L+ +G K ++ + +A N +R
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR 164
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
L L+ L+ HL+ GDKVL++GTGSG L A + GK ++ P +L
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVLAI---AAEKLGGKALGVDIDPMVL 155
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
HL G KVLD+G+GSG L+ +G K ++ + +A N +R
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR 164
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVK 163
H G VLD+G+GSG L+ A GA KVYA+E K
Sbjct: 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK 96
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
P D ++L ++ + GD VLE G+GSG ++ VG G+V + E
Sbjct: 91 PKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE 137
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 91 ISGKVYTIEHIPELLEXXXX--XXXXXXETYIKRINFYGHLVYGSKVLDIGSGSGYLSAL 148
I G YT H+P + E +R+ G V G +VLD+G+G G L+
Sbjct: 193 ILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEG--VRGRQVLDLGAGYGALTLP 250
Query: 149 FAYMGAKVYAIE 160
A MGA+V +E
Sbjct: 251 LARMGAEVVGVE 262
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 91 ISGKVYTIEHIPELLEXXXX--XXXXXXETYIKRINFYGHLVYGSKVLDIGSGSGYLSAL 148
I G YT H+P + E +R+ G V G +VLD+G+G G L+
Sbjct: 193 ILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEG--VRGRQVLDLGAGYGALTLP 250
Query: 149 FAYMGAKVYAIE 160
A MGA+V +E
Sbjct: 251 LARMGAEVVGVE 262
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
+K G+K+LEIG G G L+ + VG SG V I+
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102
P D ++ LL L G +VLE GTGSG LT VG G V + E P
Sbjct: 82 PKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARP 131
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIR 174
G VLD+G+G+G LS A GA +VYA+E + ++A + +R
Sbjct: 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVE-ASAIWQQAREVVR 126
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
+LK D V EIGTG G+LTT + IS +V +IE
Sbjct: 26 NLKETDTVYEIGTGKGHLTT---KLAKISKQVTSIE 58
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
NA+ S L+ L+ +K GD++L +G SG + ++G G++Y +E P +
Sbjct: 56 NAY-RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRV 114
Query: 105 LE 106
+
Sbjct: 115 MR 116
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
P D L++ + GD ++E G GSG LT +VG G+V + E
Sbjct: 79 PKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
>pdb|3E23|A Chain A, Crystal Structure Of The Rpa2492 Protein In Complex With
Sam From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr299
Length = 211
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
F G L G+K+L++G G+GY + G V A + L A + + R
Sbjct: 35 TKFLGELPAGAKILELGCGAGYQAEAXLAAGFDVDATDGSPELAAEASRRLGR 87
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
P D L++ + GD ++E G GSG LT +VG G+V + E
Sbjct: 79 PKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 135 VLDIGSGSGYLSALFAYMGA-KVYAIE 160
VLD+G GSG LS A GA K+YA+E
Sbjct: 162 VLDVGCGSGILSFFAAQAGARKIYAVE 188
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
G +LD+G G+G L+ A GA+V ++ ++A +N +A A NF
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHLHFDVADARNF 112
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 135 VLDIGSGSGYLSALFAYMGA-KVYAIE 160
VLD+G GSG LS A GA K+YA+E
Sbjct: 50 VLDVGCGSGILSFFAAQAGARKIYAVE 76
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 135 VLDIGSGSGYLSALFAYMGA-KVYAIE 160
VLD+G GSG LS A GA K+YA+E
Sbjct: 49 VLDVGCGSGILSFFAAQAGARKIYAVE 75
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
+K G VL +G SG + +VG GK+Y IE P +L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVL 111
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
+K G VL +G SG + +VG GK+Y IE P +L
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVL 118
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 135 VLDIGSGSGYLSALFAYMGA-KVYAIE 160
VLD+G GSG LS A GA K+YA+E
Sbjct: 54 VLDVGCGSGILSFFAAQAGARKIYAVE 80
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 135 VLDIGSGSGYLSALFAYMGA-KVYAIE 160
VLD+G GSG LS A GA K+YA+E
Sbjct: 45 VLDVGCGSGILSFFAAQAGARKIYAVE 71
>pdb|2IPX|A Chain A, Human Fibrillarin
Length = 233
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
H+K G KVL +G SG + +VG G VY +E
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 109
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
+K G VL +G SG + +VG GK++ IE P +L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVL 111
>pdb|3LEC|A Chain A, The Crystal Structure Of A Protein In The Nadb-Rossmann
Superfamily From Streptococcus Agalactiae To 1.8a
Length = 230
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAI--EHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G+++LD+GS YL G +AI E V + A+KN+ L +
Sbjct: 22 GARLLDVGSDHAYLPIFLLQXGYCDFAIAGEVVNGPYQSALKNVSEH----GLTSKIDVR 77
Query: 190 CADGRRGYPDAAPYDVIYIS----QAIRDIPWHIVDQLK-LGGRMLFIKGHEDDI 239
A+G + +A D I I + I DI + +D+L+ + +L EDD+
Sbjct: 78 LANGLSAFEEADNIDTITICGXGGRLIADILNNDIDKLQHVKTLVLQPNNREDDL 132
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEH 100
G +VLE G GSG LT VG +G+V + E
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ 132
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIE 160
GS + DIG+G+G S A G VYA+E
Sbjct: 35 GSVIADIGAGTGGYSVALANQGLFVYAVE 63
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIR 174
H+ VLD+G G+G LS A GA KV A++ + L +AM IR
Sbjct: 42 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEIL-YQAMDIIR 88
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIE 160
HL VLD+GSG+G L A GA KV IE
Sbjct: 57 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 90
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 60 LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
L + ++ G KVL +G SG + ++ ++GK Y +E P ++
Sbjct: 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV 114
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIE 160
HL VLD+GSG+G L A GA KV IE
Sbjct: 67 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 100
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIE 160
HL VLD+GSG+G L A GA KV IE
Sbjct: 54 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 87
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIE 160
HL VLD+GSG+G L A GA KV IE
Sbjct: 63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE 96
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK 155
H+ VLD+G G+G LS A GAK
Sbjct: 61 HIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,501,226
Number of Sequences: 62578
Number of extensions: 398001
Number of successful extensions: 1020
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 950
Number of HSP's gapped (non-prelim): 74
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)