Query psy7837
Match_columns 299
No_of_seqs 322 out of 3613
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:08:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 5.1E-32 1.1E-36 220.3 16.5 186 9-269 18-203 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 1.8E-31 3.9E-36 221.7 13.6 194 6-271 15-208 (209)
3 PRK13942 protein-L-isoaspartat 99.9 1.5E-26 3.2E-31 194.3 18.2 190 7-270 20-209 (212)
4 PRK13944 protein-L-isoaspartat 99.9 8.3E-26 1.8E-30 188.9 16.9 189 7-267 16-204 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 6.4E-25 1.4E-29 185.1 17.7 193 7-273 21-213 (215)
6 KOG1661|consensus 99.9 1.9E-23 4.2E-28 167.5 14.4 206 13-277 30-236 (237)
7 PRK00312 pcm protein-L-isoaspa 99.9 3E-22 6.5E-27 168.6 17.6 188 7-270 22-209 (212)
8 PRK13943 protein-L-isoaspartat 99.9 4.6E-20 1E-24 162.9 18.3 186 10-267 22-213 (322)
9 COG2519 GCD14 tRNA(1-methylade 99.7 5E-17 1.1E-21 135.5 10.7 131 39-237 68-199 (256)
10 COG2226 UbiE Methylase involve 99.7 2.6E-16 5.7E-21 132.4 12.2 113 55-236 41-159 (238)
11 PF12847 Methyltransf_18: Meth 99.7 8.9E-16 1.9E-20 115.7 12.3 99 131-233 1-111 (112)
12 PF08704 GCD14: tRNA methyltra 99.7 3E-16 6.5E-21 133.2 10.4 134 37-237 12-150 (247)
13 PF01209 Ubie_methyltran: ubiE 99.7 5E-16 1.1E-20 131.8 11.7 113 55-235 37-155 (233)
14 PLN02336 phosphoethanolamine N 99.6 6.1E-15 1.3E-19 138.7 17.6 100 130-235 265-371 (475)
15 COG2242 CobL Precorrin-6B meth 99.6 7.1E-15 1.5E-19 117.6 12.6 165 47-289 16-182 (187)
16 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.8E-15 3.9E-20 125.3 7.5 102 130-237 58-165 (243)
17 PRK00107 gidB 16S rRNA methylt 99.6 3.5E-14 7.7E-19 116.4 14.4 105 126-236 40-148 (187)
18 PLN02233 ubiquinone biosynthes 99.6 4.6E-14 9.9E-19 122.3 14.5 109 65-236 71-185 (261)
19 PLN02396 hexaprenyldihydroxybe 99.6 1.7E-14 3.6E-19 127.8 11.4 104 129-236 129-238 (322)
20 PLN02244 tocopherol O-methyltr 99.6 6E-14 1.3E-18 126.1 14.5 102 130-235 117-225 (340)
21 PF08241 Methyltransf_11: Meth 99.6 2.6E-14 5.7E-19 103.9 10.0 88 136-231 1-95 (95)
22 TIGR02752 MenG_heptapren 2-hep 99.5 1E-13 2.3E-18 118.1 13.7 114 55-236 35-154 (231)
23 PRK11207 tellurite resistance 99.5 1E-13 2.2E-18 115.2 12.5 98 129-232 28-133 (197)
24 PF13847 Methyltransf_31: Meth 99.5 8.4E-14 1.8E-18 110.9 11.1 100 130-235 2-112 (152)
25 PRK11036 putative S-adenosyl-L 99.5 1.5E-13 3.1E-18 119.0 12.6 104 130-237 43-153 (255)
26 TIGR00138 gidB 16S rRNA methyl 99.5 3.3E-13 7.1E-18 110.4 13.4 101 131-237 42-146 (181)
27 PF02353 CMAS: Mycolic acid cy 99.5 2.7E-13 5.8E-18 117.7 13.4 108 121-235 52-168 (273)
28 PF05175 MTS: Methyltransferas 99.5 4.8E-13 1E-17 108.5 14.0 101 131-237 31-144 (170)
29 PRK08287 cobalt-precorrin-6Y C 99.5 3.9E-13 8.4E-18 110.9 13.6 101 128-235 28-133 (187)
30 COG2230 Cfa Cyclopropane fatty 99.5 2.7E-13 5.9E-18 116.2 12.7 140 22-237 33-180 (283)
31 TIGR02469 CbiT precorrin-6Y C5 99.5 1.2E-12 2.6E-17 100.1 14.5 113 53-234 7-123 (124)
32 TIGR00477 tehB tellurite resis 99.5 3.3E-13 7.1E-18 112.0 12.0 98 129-233 28-133 (195)
33 PRK00377 cbiT cobalt-precorrin 99.5 3E-13 6.5E-18 112.5 11.7 119 51-236 26-148 (198)
34 PRK14103 trans-aconitate 2-met 99.5 2.3E-13 5E-18 117.8 11.3 95 128-235 26-128 (255)
35 COG4106 Tam Trans-aconitate me 99.5 2.8E-14 6.2E-19 115.5 4.8 154 128-292 27-204 (257)
36 PF06325 PrmA: Ribosomal prote 99.5 4.1E-13 8.9E-18 117.1 11.7 98 129-234 159-260 (295)
37 COG2264 PrmA Ribosomal protein 99.5 1.1E-12 2.4E-17 113.4 13.8 158 4-234 103-264 (300)
38 PF13659 Methyltransf_26: Meth 99.5 1.9E-13 4.2E-18 103.7 8.1 99 132-234 1-116 (117)
39 PRK10258 biotin biosynthesis p 99.5 1.5E-12 3.2E-17 112.4 14.1 98 130-237 41-144 (251)
40 PRK11873 arsM arsenite S-adeno 99.5 1.4E-12 3E-17 114.0 14.0 105 64-234 74-184 (272)
41 KOG1270|consensus 99.5 2.2E-13 4.8E-18 113.8 8.1 103 131-237 89-199 (282)
42 PRK04266 fibrillarin; Provisio 99.4 2.9E-12 6.3E-17 108.3 14.5 116 50-234 54-177 (226)
43 PTZ00098 phosphoethanolamine N 99.4 2E-12 4.3E-17 112.2 13.6 101 128-235 49-158 (263)
44 PRK03522 rumB 23S rRNA methylu 99.4 1.4E-12 3.1E-17 116.1 12.5 129 131-270 173-305 (315)
45 PRK12335 tellurite resistance 99.4 1.5E-12 3.3E-17 114.5 12.5 97 130-233 119-223 (287)
46 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.2E-12 2.7E-17 121.8 12.4 141 120-270 286-433 (443)
47 TIGR01177 conserved hypothetic 99.4 3E-12 6.5E-17 114.8 14.2 112 121-237 172-298 (329)
48 PF03848 TehB: Tellurite resis 99.4 3.5E-12 7.5E-17 104.2 13.0 102 126-234 25-134 (192)
49 TIGR00537 hemK_rel_arch HemK-r 99.4 2.4E-12 5.3E-17 105.4 11.8 100 130-237 18-144 (179)
50 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.9E-12 6.2E-17 110.3 12.8 112 55-233 44-164 (247)
51 PRK00121 trmB tRNA (guanine-N( 99.4 1.5E-12 3.3E-17 108.5 10.6 102 131-237 40-160 (202)
52 PRK01683 trans-aconitate 2-met 99.4 2.6E-12 5.7E-17 111.3 12.3 97 128-235 28-132 (258)
53 PLN02781 Probable caffeoyl-CoA 99.4 2.9E-12 6.3E-17 109.1 11.9 117 51-233 53-178 (234)
54 COG4123 Predicted O-methyltran 99.4 1.3E-12 2.8E-17 110.1 9.4 106 129-238 42-175 (248)
55 PRK11088 rrmA 23S rRNA methylt 99.4 8.8E-12 1.9E-16 108.9 14.9 96 131-237 85-185 (272)
56 TIGR00406 prmA ribosomal prote 99.4 1.2E-11 2.5E-16 108.9 15.6 112 55-235 147-261 (288)
57 PRK14967 putative methyltransf 99.4 9E-12 2E-16 105.6 13.8 101 129-236 34-162 (223)
58 PRK15068 tRNA mo(5)U34 methylt 99.4 4.8E-12 1E-16 112.7 12.6 99 130-233 121-226 (322)
59 KOG2915|consensus 99.4 7.9E-12 1.7E-16 104.7 12.6 129 39-234 79-210 (314)
60 PF13489 Methyltransf_23: Meth 99.4 1.8E-12 3.9E-17 103.8 7.7 100 123-237 13-119 (161)
61 TIGR00740 methyltransferase, p 99.4 6.7E-12 1.4E-16 107.6 11.6 99 130-234 52-162 (239)
62 TIGR00452 methyltransferase, p 99.4 7.7E-12 1.7E-16 110.4 12.2 101 128-233 118-225 (314)
63 TIGR02085 meth_trns_rumB 23S r 99.4 2.9E-12 6.3E-17 116.6 9.8 130 130-270 232-365 (374)
64 TIGR03533 L3_gln_methyl protei 99.4 2.2E-11 4.7E-16 106.8 14.9 101 131-236 121-254 (284)
65 PTZ00146 fibrillarin; Provisio 99.4 1.4E-11 2.9E-16 106.6 13.2 116 52-235 116-239 (293)
66 TIGR00091 tRNA (guanine-N(7)-) 99.4 5.1E-12 1.1E-16 104.8 10.3 102 131-237 16-136 (194)
67 PF13649 Methyltransf_25: Meth 99.4 1.9E-12 4.2E-17 95.7 7.0 87 135-227 1-101 (101)
68 PRK08317 hypothetical protein; 99.4 1.9E-11 4.2E-16 104.3 14.2 111 119-235 7-126 (241)
69 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.2E-11 2.7E-16 103.6 12.4 105 130-234 33-153 (213)
70 TIGR00446 nop2p NOL1/NOP2/sun 99.4 1.6E-11 3.5E-16 106.6 13.5 109 64-238 68-204 (264)
71 PRK15001 SAM-dependent 23S rib 99.3 1.8E-11 3.8E-16 110.5 14.1 101 132-235 229-342 (378)
72 PRK14968 putative methyltransf 99.3 1.4E-11 3.1E-16 101.4 12.3 101 130-236 22-151 (188)
73 TIGR02021 BchM-ChlM magnesium 99.3 3.2E-11 6.9E-16 102.0 14.5 96 129-231 53-156 (219)
74 PLN02476 O-methyltransferase 99.3 1.5E-11 3.2E-16 106.2 12.2 117 52-234 104-229 (278)
75 PRK00517 prmA ribosomal protei 99.3 1.9E-11 4.1E-16 105.4 12.9 94 130-235 118-215 (250)
76 PRK07402 precorrin-6B methylas 99.3 3E-11 6.6E-16 100.3 13.5 105 128-237 37-146 (196)
77 PF05401 NodS: Nodulation prot 99.3 1.2E-11 2.6E-16 100.0 10.6 94 133-234 45-147 (201)
78 PF08242 Methyltransf_12: Meth 99.3 3.2E-13 6.9E-18 99.5 1.0 89 136-229 1-99 (99)
79 PF01596 Methyltransf_3: O-met 99.3 4.9E-12 1.1E-16 105.1 8.0 116 53-234 32-156 (205)
80 PRK14901 16S rRNA methyltransf 99.3 3.2E-11 6.8E-16 112.1 14.3 106 65-236 250-387 (434)
81 PLN02490 MPBQ/MSBQ methyltrans 99.3 2E-11 4.4E-16 108.6 12.4 97 130-234 112-216 (340)
82 COG2813 RsmC 16S RNA G1207 met 99.3 3.1E-11 6.8E-16 103.9 13.0 100 130-236 157-269 (300)
83 PRK06922 hypothetical protein; 99.3 2.7E-11 5.9E-16 114.5 13.6 103 126-234 413-538 (677)
84 PRK11705 cyclopropane fatty ac 99.3 3.7E-11 8E-16 109.5 14.1 102 123-235 159-269 (383)
85 PRK14903 16S rRNA methyltransf 99.3 3.7E-11 8.1E-16 111.2 14.1 109 65-239 235-372 (431)
86 PRK14904 16S rRNA methyltransf 99.3 4.3E-11 9.3E-16 111.5 14.6 106 65-237 248-381 (445)
87 smart00828 PKS_MT Methyltransf 99.3 1.9E-11 4.2E-16 103.6 11.2 97 133-234 1-105 (224)
88 COG4122 Predicted O-methyltran 99.3 4E-11 8.7E-16 99.7 12.4 115 54-234 47-167 (219)
89 PRK11805 N5-glutamine S-adenos 99.3 6.3E-11 1.4E-15 104.8 14.4 99 133-236 135-266 (307)
90 TIGR02072 BioC biotin biosynth 99.3 4.6E-11 1E-15 102.0 12.7 99 130-237 33-139 (240)
91 KOG4300|consensus 99.3 2.6E-11 5.6E-16 97.8 10.1 111 121-236 66-185 (252)
92 TIGR00479 rumA 23S rRNA (uraci 99.3 1.3E-11 2.7E-16 114.8 9.5 142 118-269 279-428 (431)
93 PLN03075 nicotianamine synthas 99.3 9.9E-11 2.1E-15 101.7 14.0 104 66-234 122-234 (296)
94 TIGR03704 PrmC_rel_meth putati 99.3 9.4E-11 2E-15 100.9 13.8 98 132-237 87-220 (251)
95 PRK14966 unknown domain/N5-glu 99.3 1.2E-10 2.7E-15 105.4 15.0 130 39-237 224-385 (423)
96 PRK09328 N5-glutamine S-adenos 99.3 1.5E-10 3.3E-15 101.2 14.6 102 129-236 106-241 (275)
97 PRK09489 rsmC 16S ribosomal RN 99.3 1.2E-10 2.5E-15 104.5 14.1 97 132-236 197-306 (342)
98 PRK00216 ubiE ubiquinone/menaq 99.3 9.7E-11 2.1E-15 100.1 13.1 102 129-234 49-159 (239)
99 TIGR03534 RF_mod_PrmC protein- 99.3 1.5E-10 3.3E-15 99.8 14.3 99 131-235 87-219 (251)
100 PRK11188 rrmJ 23S rRNA methylt 99.3 5.9E-11 1.3E-15 99.4 11.0 96 65-237 49-169 (209)
101 smart00138 MeTrc Methyltransfe 99.3 3.4E-11 7.4E-16 104.4 9.9 106 130-235 98-244 (264)
102 PRK14902 16S rRNA methyltransf 99.2 1.5E-10 3.3E-15 107.9 14.6 106 65-236 248-382 (444)
103 KOG1540|consensus 99.2 1.5E-10 3.2E-15 96.5 12.8 114 65-236 98-217 (296)
104 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.2E-10 2.5E-15 104.9 13.1 103 130-237 121-239 (390)
105 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.6E-10 5.7E-15 94.4 14.3 102 130-236 52-162 (199)
106 PRK05785 hypothetical protein; 99.2 7.2E-11 1.6E-15 100.1 11.0 83 131-226 51-140 (226)
107 PRK13255 thiopurine S-methyltr 99.2 1.1E-10 2.3E-15 98.3 11.9 103 130-232 36-154 (218)
108 TIGR00536 hemK_fam HemK family 99.2 2.4E-10 5.2E-15 100.4 14.5 100 133-237 116-248 (284)
109 TIGR00563 rsmB ribosomal RNA s 99.2 1.7E-10 3.8E-15 106.9 13.9 57 55-114 228-284 (426)
110 PLN02589 caffeoyl-CoA O-methyl 99.2 9.5E-11 2.1E-15 100.0 10.9 115 53-233 66-190 (247)
111 PF08003 Methyltransf_9: Prote 99.2 1.8E-10 3.9E-15 99.2 12.3 124 94-234 88-220 (315)
112 smart00650 rADc Ribosomal RNA 99.2 2.1E-10 4.6E-15 93.0 12.2 101 126-233 8-113 (169)
113 PLN02336 phosphoethanolamine N 99.2 9.3E-11 2E-15 110.5 11.6 99 129-234 35-143 (475)
114 PRK10901 16S rRNA methyltransf 99.2 3E-10 6.6E-15 105.3 14.8 104 65-236 242-375 (427)
115 PRK15128 23S rRNA m(5)C1962 me 99.2 1.1E-10 2.4E-15 106.5 11.5 101 130-234 219-340 (396)
116 PF07021 MetW: Methionine bios 99.2 9.3E-11 2E-15 94.7 9.5 99 129-239 11-115 (193)
117 TIGR03587 Pse_Me-ase pseudamin 99.2 2.3E-10 5.1E-15 95.4 12.3 77 128-215 40-118 (204)
118 PRK05134 bifunctional 3-demeth 99.2 2.2E-10 4.8E-15 97.7 12.3 102 128-235 45-153 (233)
119 TIGR01983 UbiG ubiquinone bios 99.2 3.3E-10 7.1E-15 96.0 13.3 102 130-236 44-152 (224)
120 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.3E-15 114.4 11.6 104 130-237 537-660 (702)
121 COG2890 HemK Methylase of poly 99.2 3.5E-10 7.6E-15 98.7 13.5 97 134-237 113-242 (280)
122 PRK01544 bifunctional N5-gluta 99.2 3.1E-10 6.7E-15 107.0 14.1 103 67-236 138-272 (506)
123 KOG1271|consensus 99.2 2.5E-10 5.5E-15 90.3 10.4 101 134-238 70-186 (227)
124 PRK05031 tRNA (uracil-5-)-meth 99.2 8.2E-11 1.8E-15 106.6 8.6 129 133-271 208-353 (362)
125 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 6E-10 1.3E-14 94.1 13.1 100 129-235 37-145 (223)
126 PLN02585 magnesium protoporphy 99.2 4.3E-10 9.3E-15 99.5 12.4 83 131-216 144-226 (315)
127 TIGR02143 trmA_only tRNA (urac 99.2 9.3E-11 2E-15 105.8 8.2 128 133-270 199-343 (353)
128 COG2265 TrmA SAM-dependent met 99.2 1.1E-10 2.3E-15 107.3 8.7 145 116-269 278-428 (432)
129 TIGR02716 C20_methyl_CrtF C-20 99.1 9.1E-10 2E-14 97.8 14.0 105 123-234 141-255 (306)
130 COG1041 Predicted DNA modifica 99.1 1.4E-09 3E-14 95.5 14.5 107 123-234 189-311 (347)
131 PRK04457 spermidine synthase; 99.1 4.7E-10 1E-14 97.2 11.4 103 130-236 65-180 (262)
132 KOG1541|consensus 99.1 9E-11 2E-15 95.6 6.0 123 95-240 27-167 (270)
133 KOG2899|consensus 99.1 6.9E-11 1.5E-15 97.6 5.0 186 57-270 48-246 (288)
134 cd02440 AdoMet_MTases S-adenos 99.1 1.4E-09 3E-14 79.4 11.4 94 134-232 1-103 (107)
135 COG2263 Predicted RNA methylas 99.1 7.8E-10 1.7E-14 88.5 10.6 76 128-212 42-118 (198)
136 PRK00811 spermidine synthase; 99.1 6.6E-10 1.4E-14 97.4 11.1 106 131-236 76-194 (283)
137 PRK07580 Mg-protoporphyrin IX 99.1 1.2E-09 2.5E-14 93.0 12.2 79 129-214 61-139 (230)
138 COG1092 Predicted SAM-dependen 99.1 8E-10 1.7E-14 99.8 11.6 105 131-238 217-341 (393)
139 PRK06202 hypothetical protein; 99.1 8.9E-10 1.9E-14 94.0 11.2 94 130-233 59-166 (232)
140 PRK13256 thiopurine S-methyltr 99.1 1.6E-09 3.6E-14 90.9 12.0 104 131-234 43-164 (226)
141 TIGR00438 rrmJ cell division p 99.1 1.7E-09 3.6E-14 89.2 11.4 41 64-104 29-69 (188)
142 TIGR03438 probable methyltrans 99.1 4E-09 8.8E-14 93.4 13.8 117 55-236 51-180 (301)
143 TIGR00095 RNA methyltransferas 99.0 8.3E-09 1.8E-13 85.0 14.3 102 130-235 48-161 (189)
144 PF02475 Met_10: Met-10+ like- 99.0 3.3E-09 7.2E-14 87.6 11.2 126 91-230 70-199 (200)
145 TIGR00417 speE spermidine synt 99.0 4.3E-09 9.4E-14 91.7 11.8 105 131-236 72-189 (270)
146 TIGR02081 metW methionine bios 99.0 2.6E-09 5.7E-14 88.5 9.8 95 130-236 12-112 (194)
147 PF05958 tRNA_U5-meth_tr: tRNA 99.0 7.9E-10 1.7E-14 99.8 7.0 142 118-270 184-342 (352)
148 PRK11933 yebU rRNA (cytosine-C 99.0 1E-08 2.2E-13 95.3 13.4 106 64-235 110-244 (470)
149 PF05724 TPMT: Thiopurine S-me 99.0 3.2E-09 6.9E-14 89.2 8.8 104 129-232 35-154 (218)
150 PF03602 Cons_hypoth95: Conser 99.0 3.5E-09 7.6E-14 86.6 8.8 103 130-236 41-156 (183)
151 PRK01581 speE spermidine synth 98.9 1.4E-08 3.1E-13 90.4 12.7 107 130-236 149-271 (374)
152 PLN02366 spermidine synthase 98.9 2.7E-08 5.9E-13 87.8 14.2 105 130-235 90-208 (308)
153 KOG1499|consensus 98.9 6.4E-09 1.4E-13 90.9 9.9 108 118-230 47-164 (346)
154 PHA03411 putative methyltransf 98.9 1.5E-08 3.2E-13 87.0 11.8 95 130-235 63-185 (279)
155 KOG3010|consensus 98.9 2E-09 4.3E-14 89.2 6.1 107 123-233 24-136 (261)
156 PF10672 Methyltrans_SAM: S-ad 98.9 2E-09 4.4E-14 93.5 6.4 105 130-237 122-242 (286)
157 PTZ00338 dimethyladenosine tra 98.9 9.5E-09 2.1E-13 90.3 10.7 95 123-223 28-122 (294)
158 PF10294 Methyltransf_16: Puta 98.9 1.6E-08 3.5E-13 82.1 11.2 107 127-236 41-159 (173)
159 PF02390 Methyltransf_4: Putat 98.9 9.4E-09 2E-13 85.0 9.7 102 133-239 19-139 (195)
160 PF01170 UPF0020: Putative RNA 98.9 8.9E-09 1.9E-13 84.1 9.1 110 119-233 16-150 (179)
161 COG0742 N6-adenine-specific me 98.9 1.2E-07 2.7E-12 76.6 15.5 107 126-236 37-157 (187)
162 PRK14896 ksgA 16S ribosomal RN 98.9 2.4E-08 5.2E-13 86.5 12.2 80 126-214 24-103 (258)
163 KOG2904|consensus 98.9 6.2E-08 1.4E-12 81.7 14.0 102 131-236 148-288 (328)
164 PHA03412 putative methyltransf 98.9 1.3E-08 2.9E-13 85.3 10.0 70 132-212 50-124 (241)
165 TIGR00478 tly hemolysin TlyA f 98.9 1.3E-08 2.9E-13 85.8 9.8 114 116-237 60-175 (228)
166 PRK03612 spermidine synthase; 98.9 9.1E-09 2E-13 97.6 9.9 107 130-236 296-418 (521)
167 PLN02672 methionine S-methyltr 98.9 2.1E-08 4.6E-13 100.8 12.5 109 131-239 118-284 (1082)
168 PRK00274 ksgA 16S ribosomal RN 98.9 1.7E-08 3.7E-13 88.0 10.5 88 128-223 39-126 (272)
169 COG2521 Predicted archaeal met 98.9 6E-09 1.3E-13 85.8 6.9 106 129-237 132-249 (287)
170 TIGR00755 ksgA dimethyladenosi 98.9 4.7E-08 1E-12 84.4 13.0 92 127-227 25-120 (253)
171 KOG1663|consensus 98.9 2E-08 4.4E-13 82.8 10.0 115 53-233 60-183 (237)
172 KOG2361|consensus 98.8 6.5E-09 1.4E-13 86.1 6.6 98 134-237 74-187 (264)
173 COG2520 Predicted methyltransf 98.8 2.9E-08 6.2E-13 87.9 10.9 133 92-237 158-293 (341)
174 COG4976 Predicted methyltransf 98.8 2.2E-09 4.7E-14 88.1 2.4 98 130-237 124-229 (287)
175 PRK04148 hypothetical protein; 98.8 2E-07 4.2E-12 71.5 12.8 93 130-234 15-110 (134)
176 KOG3191|consensus 98.8 8.2E-08 1.8E-12 76.2 10.8 102 132-240 44-175 (209)
177 COG0220 Predicted S-adenosylme 98.8 9.4E-08 2E-12 80.5 10.9 102 133-239 50-170 (227)
178 KOG3420|consensus 98.7 2.5E-08 5.3E-13 76.2 6.4 79 128-212 45-124 (185)
179 PRK11727 23S rRNA mA1618 methy 98.7 7E-08 1.5E-12 85.4 10.0 81 131-214 114-201 (321)
180 COG0144 Sun tRNA and rRNA cyto 98.7 3.8E-07 8.1E-12 82.4 14.6 110 64-239 153-294 (355)
181 PRK04338 N(2),N(2)-dimethylgua 98.7 6.4E-08 1.4E-12 88.1 9.7 96 132-232 58-157 (382)
182 PF03291 Pox_MCEL: mRNA cappin 98.7 2.1E-07 4.6E-12 83.0 11.7 107 131-237 62-190 (331)
183 PF05185 PRMT5: PRMT5 arginine 98.7 3.3E-07 7.2E-12 85.0 13.3 95 131-230 186-294 (448)
184 KOG1500|consensus 98.7 1.6E-07 3.5E-12 81.4 10.0 105 123-233 169-282 (517)
185 PF00891 Methyltransf_2: O-met 98.7 6.3E-07 1.4E-11 76.8 13.7 97 123-234 92-200 (241)
186 KOG0820|consensus 98.7 2.2E-07 4.8E-12 78.4 10.2 86 121-212 48-133 (315)
187 COG0030 KsgA Dimethyladenosine 98.6 3.3E-07 7E-12 78.2 11.0 99 120-225 19-118 (259)
188 PF05219 DREV: DREV methyltran 98.6 3.3E-07 7.1E-12 77.5 10.2 89 131-233 94-188 (265)
189 PF09445 Methyltransf_15: RNA 98.6 5.8E-08 1.3E-12 77.2 5.2 76 133-212 1-79 (163)
190 PF02527 GidB: rRNA small subu 98.6 7.9E-07 1.7E-11 72.6 11.9 113 118-236 34-151 (184)
191 COG0116 Predicted N6-adenine-s 98.6 7.9E-07 1.7E-11 79.5 12.7 140 93-236 149-347 (381)
192 PLN02232 ubiquinone biosynthes 98.6 1.9E-07 4E-12 74.9 7.8 78 157-236 1-84 (160)
193 COG0421 SpeE Spermidine syntha 98.6 5.1E-07 1.1E-11 78.5 10.9 111 124-236 70-193 (282)
194 PLN02823 spermine synthase 98.6 4.2E-07 9.2E-12 81.2 10.3 104 131-235 103-222 (336)
195 PF06080 DUF938: Protein of un 98.6 8.1E-07 1.8E-11 73.0 11.0 114 55-234 12-142 (204)
196 PRK01544 bifunctional N5-gluta 98.5 2.3E-06 4.9E-11 81.0 15.0 103 131-238 347-467 (506)
197 COG2264 PrmA Ribosomal protein 98.5 1.7E-07 3.7E-12 81.4 6.7 42 130-171 161-203 (300)
198 PF06325 PrmA: Ribosomal prote 98.5 2.2E-07 4.7E-12 81.4 7.3 59 54-114 148-206 (295)
199 PF01269 Fibrillarin: Fibrilla 98.5 1.9E-06 4.1E-11 71.3 12.2 115 52-234 57-179 (229)
200 PRK00536 speE spermidine synth 98.5 9.7E-07 2.1E-11 75.9 10.9 104 130-237 71-175 (262)
201 KOG2187|consensus 98.5 5.5E-07 1.2E-11 82.4 9.2 118 115-237 367-494 (534)
202 KOG1975|consensus 98.5 6.2E-07 1.4E-11 77.5 8.8 111 127-237 113-241 (389)
203 PF01739 CheR: CheR methyltran 98.5 4.4E-07 9.4E-12 75.0 7.6 105 131-235 31-177 (196)
204 PRK10611 chemotaxis methyltran 98.5 1.5E-06 3.2E-11 75.9 10.8 153 43-234 92-263 (287)
205 PF12847 Methyltransf_18: Meth 98.4 5.5E-07 1.2E-11 67.4 6.6 47 67-114 1-47 (112)
206 COG2230 Cfa Cyclopropane fatty 98.4 9.3E-07 2E-11 76.3 8.5 51 123-173 64-115 (283)
207 TIGR00308 TRM1 tRNA(guanine-26 98.4 8.3E-07 1.8E-11 80.5 8.6 97 132-233 45-147 (374)
208 PF03141 Methyltransf_29: Puta 98.4 4.2E-07 9.1E-12 83.3 6.4 116 115-237 97-223 (506)
209 PF02353 CMAS: Mycolic acid cy 98.4 4.3E-07 9.4E-12 79.0 6.3 84 23-114 24-107 (273)
210 PRK11783 rlmL 23S rRNA m(2)G24 98.4 3.3E-06 7.1E-11 83.2 12.8 117 117-237 175-351 (702)
211 PF05891 Methyltransf_PK: AdoM 98.4 1E-06 2.2E-11 72.8 7.7 102 131-237 55-165 (218)
212 COG1352 CheR Methylase of chem 98.4 1.7E-06 3.7E-11 74.6 9.4 127 68-236 97-244 (268)
213 PF01564 Spermine_synth: Sperm 98.4 3.4E-06 7.3E-11 72.4 11.1 106 131-237 76-195 (246)
214 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 1.3E-06 2.9E-11 76.5 8.8 105 65-235 83-221 (283)
215 PRK00517 prmA ribosomal protei 98.4 1.2E-05 2.5E-10 69.4 14.4 59 54-114 106-164 (250)
216 PRK00050 16S rRNA m(4)C1402 me 98.4 8.7E-07 1.9E-11 77.5 7.3 61 51-113 5-65 (296)
217 PF13847 Methyltransf_31: Meth 98.4 1.4E-06 3E-11 69.2 7.6 49 66-114 2-50 (152)
218 PF05148 Methyltransf_8: Hypot 98.4 2.7E-06 6E-11 69.7 9.2 94 123-237 64-162 (219)
219 COG3897 Predicted methyltransf 98.4 2.1E-06 4.5E-11 69.2 8.0 107 121-237 69-182 (218)
220 PRK07402 precorrin-6B methylas 98.4 2.7E-06 5.8E-11 70.6 9.0 64 48-114 23-86 (196)
221 PRK08287 cobalt-precorrin-6Y C 98.3 2.6E-06 5.6E-11 70.1 8.8 64 48-114 14-77 (187)
222 COG2518 Pcm Protein-L-isoaspar 98.3 1.7E-06 3.6E-11 71.2 7.1 48 125-172 66-113 (209)
223 PF02384 N6_Mtase: N-6 DNA Met 98.3 5.7E-06 1.2E-10 73.7 10.5 110 123-235 38-185 (311)
224 COG1064 AdhP Zn-dependent alco 98.3 7.4E-07 1.6E-11 78.9 4.3 159 64-235 78-261 (339)
225 PRK00274 ksgA 16S ribosomal RN 98.3 3E-06 6.6E-11 73.9 7.8 64 44-112 20-84 (272)
226 COG0293 FtsJ 23S rRNA methylas 98.2 8.9E-06 1.9E-10 66.9 9.7 39 64-102 42-80 (205)
227 KOG1122|consensus 98.2 1.3E-05 2.7E-10 71.9 11.0 106 65-237 239-375 (460)
228 COG0357 GidB Predicted S-adeno 98.2 1.1E-05 2.3E-10 67.2 10.0 96 132-233 68-168 (215)
229 PRK13944 protein-L-isoaspartat 98.2 4.8E-06 1E-10 69.6 8.0 45 128-172 69-116 (205)
230 COG3963 Phospholipid N-methylt 98.2 9.4E-06 2E-10 63.8 8.8 98 130-237 47-160 (194)
231 TIGR00406 prmA ribosomal prote 98.2 9.3E-06 2E-10 71.5 9.5 43 130-172 158-201 (288)
232 PRK10742 putative methyltransf 98.2 6E-06 1.3E-10 69.9 7.9 87 128-214 83-176 (250)
233 TIGR02987 met_A_Alw26 type II 98.2 2.4E-05 5.2E-10 74.7 13.0 70 44-113 3-84 (524)
234 COG2226 UbiE Methylase involve 98.2 5.6E-06 1.2E-10 70.1 7.6 45 128-172 48-94 (238)
235 TIGR00080 pimt protein-L-isoas 98.2 4.9E-06 1.1E-10 70.1 7.3 45 128-172 74-121 (215)
236 PRK00107 gidB 16S rRNA methylt 98.2 6.3E-06 1.4E-10 67.7 7.5 50 64-114 42-91 (187)
237 COG4798 Predicted methyltransf 98.2 9.2E-06 2E-10 65.4 7.8 40 64-103 45-84 (238)
238 PF12147 Methyltransf_20: Puta 98.2 5.9E-05 1.3E-09 64.9 13.2 115 118-237 122-253 (311)
239 PRK13942 protein-L-isoaspartat 98.2 7.5E-06 1.6E-10 68.8 7.7 46 127-172 72-120 (212)
240 COG4076 Predicted RNA methylas 98.1 6E-06 1.3E-10 66.1 6.4 93 132-231 33-133 (252)
241 PTZ00338 dimethyladenosine tra 98.1 8.1E-06 1.8E-10 71.8 7.8 66 44-114 14-80 (294)
242 PRK14103 trans-aconitate 2-met 98.1 7.9E-06 1.7E-10 70.7 7.5 53 55-110 19-71 (255)
243 TIGR02469 CbiT precorrin-6Y C5 98.1 1.2E-05 2.7E-10 61.0 7.5 45 128-172 16-62 (124)
244 TIGR03587 Pse_Me-ase pseudamin 98.1 9.7E-06 2.1E-10 67.7 7.4 48 64-112 40-87 (204)
245 TIGR00138 gidB 16S rRNA methyl 98.1 8.3E-06 1.8E-10 66.7 6.6 47 67-114 42-88 (181)
246 KOG3045|consensus 98.1 1.9E-05 4E-10 66.5 8.5 89 126-237 175-268 (325)
247 PRK05785 hypothetical protein; 98.1 1.2E-05 2.6E-10 68.2 7.4 55 55-111 39-93 (226)
248 PRK00312 pcm protein-L-isoaspa 98.1 1.4E-05 3E-10 67.1 7.7 47 126-172 73-119 (212)
249 PF00398 RrnaAD: Ribosomal RNA 98.1 4.3E-05 9.4E-10 66.3 11.0 84 123-213 22-108 (262)
250 PF01135 PCMT: Protein-L-isoas 98.1 1.2E-05 2.5E-10 67.2 7.1 46 127-172 68-116 (209)
251 PF01209 Ubie_methyltran: ubiE 98.1 7.8E-06 1.7E-10 69.6 6.1 47 126-172 42-91 (233)
252 TIGR00740 methyltransferase, p 98.1 2E-05 4.3E-10 67.5 8.6 50 65-114 51-101 (239)
253 PF01728 FtsJ: FtsJ-like methy 98.1 1.7E-05 3.6E-10 64.9 7.7 103 118-236 8-142 (181)
254 PRK15451 tRNA cmo(5)U34 methyl 98.1 1.1E-05 2.3E-10 69.6 6.7 43 130-172 55-101 (247)
255 PRK01683 trans-aconitate 2-met 98.0 1.4E-05 3.1E-10 69.2 7.5 55 55-112 21-75 (258)
256 COG4262 Predicted spermidine s 98.0 3.5E-05 7.5E-10 67.9 9.7 109 130-238 288-412 (508)
257 PRK14896 ksgA 16S ribosomal RN 98.0 1.4E-05 3E-10 69.3 7.4 65 44-113 7-72 (258)
258 smart00650 rADc Ribosomal RNA 98.0 1.5E-05 3.3E-10 64.4 7.2 54 55-113 3-56 (169)
259 PLN02233 ubiquinone biosynthes 98.0 1.8E-05 3.8E-10 68.7 8.0 47 127-173 69-118 (261)
260 PRK11760 putative 23S rRNA C24 98.0 6.9E-05 1.5E-09 66.3 11.3 87 128-226 208-296 (357)
261 TIGR00477 tehB tellurite resis 98.0 1.9E-05 4.1E-10 65.4 7.5 55 55-114 20-74 (195)
262 PF08123 DOT1: Histone methyla 98.0 5.4E-05 1.2E-09 63.0 10.0 61 51-114 28-88 (205)
263 PF04816 DUF633: Family of unk 98.0 6.5E-05 1.4E-09 62.5 10.4 96 135-234 1-102 (205)
264 TIGR02021 BchM-ChlM magnesium 98.0 2.3E-05 5.1E-10 66.1 8.0 57 55-114 43-99 (219)
265 KOG2940|consensus 98.0 1.4E-05 3.1E-10 66.0 6.2 101 130-237 71-178 (325)
266 COG2242 CobL Precorrin-6B meth 98.0 2.8E-05 6E-10 62.8 7.7 45 128-172 31-77 (187)
267 COG2263 Predicted RNA methylas 98.0 4E-05 8.7E-10 61.8 8.5 67 46-114 23-90 (198)
268 TIGR02752 MenG_heptapren 2-hep 98.0 2.4E-05 5.3E-10 66.5 7.9 46 127-172 41-89 (231)
269 TIGR00755 ksgA dimethyladenosi 98.0 2.2E-05 4.7E-10 67.9 7.6 65 44-113 7-72 (253)
270 COG1189 Predicted rRNA methyla 98.0 6.7E-05 1.5E-09 62.7 10.1 119 109-238 57-183 (245)
271 PRK11207 tellurite resistance 98.0 2.3E-05 5.1E-10 65.0 7.3 55 55-114 20-74 (197)
272 PF13649 Methyltransf_25: Meth 98.0 1.8E-05 3.9E-10 58.1 5.5 44 71-114 1-46 (101)
273 KOG4589|consensus 97.9 2.5E-05 5.3E-10 62.6 6.4 38 64-101 66-103 (232)
274 PRK00377 cbiT cobalt-precorrin 97.9 3.9E-05 8.4E-10 63.7 8.0 46 127-172 36-84 (198)
275 PLN02244 tocopherol O-methyltr 97.9 3.3E-05 7.2E-10 69.6 8.1 47 66-114 117-163 (340)
276 PRK08317 hypothetical protein; 97.9 3.9E-05 8.4E-10 65.2 8.1 55 55-111 9-63 (241)
277 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.9 4.9E-05 1.1E-09 65.1 8.3 142 55-235 44-201 (256)
278 COG1889 NOP1 Fibrillarin-like 97.9 0.00017 3.6E-09 58.7 10.7 115 51-234 59-181 (231)
279 PF13578 Methyltransf_24: Meth 97.9 3.4E-06 7.4E-11 62.6 0.9 95 72-232 1-104 (106)
280 KOG2730|consensus 97.9 1.1E-05 2.5E-10 66.1 3.8 78 131-212 94-175 (263)
281 COG4106 Tam Trans-aconitate me 97.9 2.2E-05 4.8E-10 64.4 5.4 49 65-114 28-76 (257)
282 TIGR03533 L3_gln_methyl protei 97.9 7.2E-05 1.6E-09 65.7 9.0 74 40-114 92-167 (284)
283 PF05175 MTS: Methyltransferas 97.9 6.5E-05 1.4E-09 60.8 8.1 57 55-114 21-77 (170)
284 KOG1541|consensus 97.9 3E-05 6.4E-10 63.8 5.8 71 49-141 32-105 (270)
285 PRK11705 cyclopropane fatty ac 97.9 5.1E-05 1.1E-09 69.4 7.9 54 56-113 158-211 (383)
286 PRK00121 trmB tRNA (guanine-N( 97.9 4E-05 8.7E-10 63.9 6.7 48 66-114 39-86 (202)
287 PRK13168 rumA 23S rRNA m(5)U19 97.8 0.00026 5.7E-09 66.2 12.7 61 51-114 279-341 (443)
288 PRK04266 fibrillarin; Provisio 97.8 6.6E-05 1.4E-09 63.6 7.8 45 127-171 68-114 (226)
289 TIGR00006 S-adenosyl-methyltra 97.8 0.00014 3.1E-09 63.9 10.1 61 51-114 6-66 (305)
290 PRK14967 putative methyltransf 97.8 0.00011 2.4E-09 62.2 9.1 48 65-114 34-81 (223)
291 PRK06202 hypothetical protein; 97.8 5E-05 1.1E-09 64.7 7.1 48 66-113 59-109 (232)
292 TIGR03438 probable methyltrans 97.8 6.9E-05 1.5E-09 66.4 8.0 43 130-172 62-107 (301)
293 PF07942 N2227: N2227-like pro 97.8 0.00062 1.3E-08 58.8 13.5 105 130-235 55-203 (270)
294 KOG1596|consensus 97.8 9.4E-05 2E-09 61.6 8.0 105 64-236 153-264 (317)
295 PRK11036 putative S-adenosyl-L 97.8 7.6E-05 1.6E-09 64.5 7.9 46 66-114 43-88 (255)
296 PF13659 Methyltransf_26: Meth 97.8 5E-05 1.1E-09 57.1 6.0 45 68-114 1-45 (117)
297 PF13679 Methyltransf_32: Meth 97.8 0.0003 6.5E-09 55.1 10.5 104 128-234 22-132 (141)
298 COG2890 HemK Methylase of poly 97.8 7E-05 1.5E-09 65.5 7.3 72 41-114 84-156 (280)
299 PTZ00098 phosphoethanolamine N 97.8 7.8E-05 1.7E-09 64.8 7.4 55 55-113 42-96 (263)
300 PRK13943 protein-L-isoaspartat 97.8 8.1E-05 1.8E-09 66.3 7.6 45 128-172 77-124 (322)
301 PF05971 Methyltransf_10: Prot 97.8 0.00017 3.6E-09 63.1 9.1 84 132-218 103-193 (299)
302 TIGR00537 hemK_rel_arch HemK-r 97.8 0.0001 2.2E-09 60.1 7.3 47 65-114 17-63 (179)
303 PF07021 MetW: Methionine bios 97.7 8.1E-05 1.8E-09 60.5 6.3 47 62-110 8-54 (193)
304 PRK07580 Mg-protoporphyrin IX 97.7 0.00013 2.8E-09 61.9 8.0 57 55-114 50-107 (230)
305 PLN02585 magnesium protoporphy 97.7 0.00012 2.5E-09 65.1 7.9 57 55-114 131-188 (315)
306 COG0030 KsgA Dimethyladenosine 97.7 0.00011 2.4E-09 62.9 7.0 65 44-113 8-73 (259)
307 PRK11088 rrmA 23S rRNA methylt 97.7 0.00014 3E-09 63.6 7.9 58 55-112 72-132 (272)
308 PRK14966 unknown domain/N5-glu 97.7 7.4E-05 1.6E-09 68.2 6.3 42 131-172 251-294 (423)
309 PRK10258 biotin biosynthesis p 97.7 9.7E-05 2.1E-09 63.7 6.9 45 66-113 41-85 (251)
310 PRK11805 N5-glutamine S-adenos 97.7 0.00018 4E-09 63.8 8.7 74 40-114 104-179 (307)
311 PRK15001 SAM-dependent 23S rib 97.7 0.00014 3.1E-09 66.0 8.1 57 55-114 218-274 (378)
312 KOG0820|consensus 97.7 0.0001 2.3E-09 62.6 6.6 69 41-114 33-102 (315)
313 COG2227 UbiG 2-polyprenyl-3-me 97.7 6.4E-05 1.4E-09 63.0 5.3 46 66-114 58-103 (243)
314 TIGR00536 hemK_fam HemK family 97.7 0.00016 3.5E-09 63.6 8.2 46 68-114 115-160 (284)
315 PRK14968 putative methyltransf 97.7 0.00021 4.5E-09 58.5 8.3 55 55-114 13-67 (188)
316 TIGR01177 conserved hypothetic 97.7 0.00016 3.5E-09 64.9 8.1 61 49-114 166-226 (329)
317 PF09243 Rsm22: Mitochondrial 97.7 0.00035 7.7E-09 61.0 9.9 84 128-216 30-116 (274)
318 PRK00216 ubiE ubiquinone/menaq 97.7 0.00019 4E-09 61.1 8.0 58 55-114 41-98 (239)
319 KOG2198|consensus 97.7 0.0006 1.3E-08 60.6 11.2 59 54-112 142-203 (375)
320 PHA03412 putative methyltransf 97.7 7.1E-05 1.5E-09 63.1 5.2 67 43-113 29-97 (241)
321 TIGR01444 fkbM_fam methyltrans 97.7 0.00016 3.5E-09 56.5 6.9 56 134-194 1-58 (143)
322 PRK12335 tellurite resistance 97.7 0.00014 3.1E-09 64.0 7.2 54 56-114 111-164 (287)
323 PLN02396 hexaprenyldihydroxybe 97.6 0.00011 2.5E-09 65.4 6.4 45 66-113 130-174 (322)
324 TIGR02081 metW methionine bios 97.6 0.00015 3.2E-09 60.0 6.6 48 61-110 7-54 (194)
325 COG4123 Predicted O-methyltran 97.6 0.00025 5.4E-09 60.3 7.9 63 50-114 28-90 (248)
326 PF01861 DUF43: Protein of unk 97.6 0.00063 1.4E-08 57.3 10.1 102 130-237 43-153 (243)
327 COG0275 Predicted S-adenosylme 97.6 0.0018 3.8E-08 56.3 13.0 60 53-114 11-70 (314)
328 PRK11873 arsM arsenite S-adeno 97.6 0.00014 3E-09 63.5 6.4 46 127-172 73-121 (272)
329 KOG2904|consensus 97.6 0.00036 7.7E-09 59.5 8.5 83 31-114 108-194 (328)
330 TIGR03704 PrmC_rel_meth putati 97.6 0.00032 6.9E-09 60.5 8.6 59 55-114 71-132 (251)
331 PLN02781 Probable caffeoyl-CoA 97.6 0.00015 3.3E-09 61.8 6.5 51 123-173 60-113 (234)
332 TIGR00452 methyltransferase, p 97.6 0.00021 4.6E-09 63.4 7.4 43 65-109 119-161 (314)
333 COG2384 Predicted SAM-dependen 97.6 0.00044 9.5E-09 57.2 8.6 106 123-232 7-119 (226)
334 TIGR00091 tRNA (guanine-N(7)-) 97.6 0.00018 4E-09 59.5 6.6 47 67-114 16-62 (194)
335 PF13489 Methyltransf_23: Meth 97.6 0.00033 7.1E-09 55.6 7.7 50 55-107 10-59 (161)
336 COG0500 SmtA SAM-dependent met 97.6 0.0014 3.1E-08 51.0 11.3 97 135-237 52-159 (257)
337 PF08241 Methyltransf_11: Meth 97.6 0.00013 2.9E-09 52.2 4.9 41 72-114 1-41 (95)
338 PF04445 SAM_MT: Putative SAM- 97.6 0.0002 4.3E-09 60.4 6.3 117 94-214 40-163 (234)
339 PRK15068 tRNA mo(5)U34 methylt 97.6 0.00027 5.7E-09 63.3 7.5 52 55-110 112-163 (322)
340 PRK09489 rsmC 16S ribosomal RN 97.6 0.00034 7.4E-09 63.0 8.3 57 55-114 186-242 (342)
341 PRK03522 rumB 23S rRNA methylu 97.5 0.00023 5E-09 63.5 7.1 61 51-114 155-217 (315)
342 KOG2899|consensus 97.5 0.00014 2.9E-09 60.9 5.0 47 129-175 56-104 (288)
343 TIGR03534 RF_mod_PrmC protein- 97.5 0.00049 1.1E-08 59.1 8.8 58 56-114 75-133 (251)
344 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.00019 4.2E-09 60.2 6.1 41 66-109 33-73 (213)
345 PF03848 TehB: Tellurite resis 97.5 0.00034 7.4E-09 57.4 7.3 55 55-114 20-74 (192)
346 PLN02490 MPBQ/MSBQ methyltrans 97.5 0.00052 1.1E-08 61.5 9.0 46 66-112 112-157 (340)
347 COG2813 RsmC 16S RNA G1207 met 97.5 0.00033 7.1E-09 60.9 7.3 58 54-114 147-204 (300)
348 PRK09328 N5-glutamine S-adenos 97.5 0.00049 1.1E-08 60.0 8.6 48 65-113 106-153 (275)
349 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.0007 1.5E-08 56.1 9.0 56 56-114 43-98 (199)
350 PRK04457 spermidine synthase; 97.5 0.00094 2E-08 57.9 10.1 48 65-113 64-111 (262)
351 TIGR03439 methyl_EasF probable 97.5 0.0023 5E-08 56.9 12.5 56 58-113 67-125 (319)
352 PF03059 NAS: Nicotianamine sy 97.5 0.00099 2.2E-08 57.7 9.9 98 132-233 121-230 (276)
353 TIGR01934 MenG_MenH_UbiE ubiqu 97.5 0.00046 1E-08 58.0 7.8 56 56-113 30-85 (223)
354 KOG2671|consensus 97.5 0.00024 5.2E-09 62.3 5.9 108 126-236 203-357 (421)
355 KOG1270|consensus 97.5 0.00015 3.3E-09 61.4 4.4 41 68-111 90-130 (282)
356 PF08704 GCD14: tRNA methyltra 97.5 0.00051 1.1E-08 58.8 7.8 55 119-173 28-85 (247)
357 PRK06922 hypothetical protein; 97.5 0.00047 1E-08 66.2 8.3 49 65-114 416-464 (677)
358 COG4976 Predicted methyltransf 97.4 0.00014 3E-09 60.3 3.7 59 48-111 108-166 (287)
359 smart00138 MeTrc Methyltransfe 97.4 0.0004 8.6E-09 60.4 6.8 47 66-112 98-152 (264)
360 TIGR00479 rumA 23S rRNA (uraci 97.4 0.00048 1E-08 64.3 7.8 61 51-114 274-336 (431)
361 KOG1331|consensus 97.4 0.00015 3.1E-09 62.2 3.8 98 125-236 39-146 (293)
362 PF13679 Methyltransf_32: Meth 97.4 0.00058 1.3E-08 53.4 7.0 51 65-115 23-76 (141)
363 PF08242 Methyltransf_12: Meth 97.4 1.3E-05 2.9E-10 58.5 -2.3 42 72-114 1-42 (99)
364 PRK14121 tRNA (guanine-N(7)-)- 97.4 0.00069 1.5E-08 61.5 8.0 48 66-114 121-168 (390)
365 PF01596 Methyltransf_3: O-met 97.4 0.00052 1.1E-08 57.2 6.6 51 123-173 37-90 (205)
366 KOG3420|consensus 97.4 0.00036 7.9E-09 53.7 5.0 72 41-114 20-93 (185)
367 KOG1269|consensus 97.4 0.0003 6.4E-09 63.5 5.3 104 127-234 106-216 (364)
368 TIGR02072 BioC biotin biosynth 97.4 0.00069 1.5E-08 57.5 7.4 58 55-113 21-79 (240)
369 TIGR00438 rrmJ cell division p 97.3 0.00046 1E-08 56.7 6.0 98 123-236 24-149 (188)
370 PLN02672 methionine S-methyltr 97.3 0.00062 1.3E-08 69.3 7.9 76 37-114 86-164 (1082)
371 KOG3191|consensus 97.3 0.00041 8.8E-09 55.5 5.2 47 68-114 44-90 (209)
372 KOG3201|consensus 97.3 0.0002 4.4E-09 56.1 3.1 106 130-237 28-144 (201)
373 COG2519 GCD14 tRNA(1-methylade 97.3 0.00083 1.8E-08 56.9 7.0 53 121-173 84-139 (256)
374 smart00828 PKS_MT Methyltransf 97.3 0.00074 1.6E-08 57.0 6.8 45 69-114 1-45 (224)
375 KOG3178|consensus 97.3 0.0037 7.9E-08 55.4 11.1 92 131-234 177-276 (342)
376 TIGR02716 C20_methyl_CrtF C-20 97.2 0.0012 2.6E-08 58.7 7.9 48 65-114 147-194 (306)
377 PRK10901 16S rRNA methyltransf 97.2 0.00089 1.9E-08 62.4 7.3 47 126-172 239-287 (427)
378 KOG2352|consensus 97.2 0.0027 5.9E-08 58.5 10.0 101 128-234 44-162 (482)
379 PRK04148 hypothetical protein; 97.2 0.0013 2.9E-08 50.5 6.8 84 66-175 15-100 (134)
380 TIGR02143 trmA_only tRNA (urac 97.2 0.0013 2.7E-08 59.7 7.9 61 51-114 180-241 (353)
381 PHA03411 putative methyltransf 97.2 0.0013 2.9E-08 56.8 7.6 64 44-112 45-108 (279)
382 PTZ00146 fibrillarin; Provisio 97.2 0.0008 1.7E-08 58.7 6.3 43 128-170 129-174 (293)
383 PLN02476 O-methyltransferase 97.2 0.0011 2.4E-08 57.6 7.0 52 122-173 109-163 (278)
384 COG4122 Predicted O-methyltran 97.2 0.0011 2.4E-08 55.4 6.7 52 122-173 50-104 (219)
385 TIGR02085 meth_trns_rumB 23S r 97.2 0.0011 2.5E-08 60.5 7.4 62 50-114 214-277 (374)
386 TIGR00478 tly hemolysin TlyA f 97.2 0.00081 1.8E-08 56.9 5.8 40 66-107 74-113 (228)
387 PRK13255 thiopurine S-methyltr 97.2 0.0013 2.7E-08 55.5 6.9 42 65-109 35-76 (218)
388 PRK11188 rrmJ 23S rRNA methylt 97.2 0.00082 1.8E-08 56.3 5.8 44 118-161 38-84 (209)
389 KOG1709|consensus 97.2 0.0069 1.5E-07 50.0 10.7 101 130-236 100-209 (271)
390 KOG1661|consensus 97.2 0.0008 1.7E-08 55.1 5.2 48 128-175 79-130 (237)
391 TIGR00446 nop2p NOL1/NOP2/sun 97.1 0.0012 2.6E-08 57.3 6.7 63 92-172 50-115 (264)
392 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0011 2.3E-08 57.7 6.2 64 45-113 9-73 (262)
393 PRK14904 16S rRNA methyltransf 97.1 0.0013 2.9E-08 61.5 7.1 47 126-172 245-294 (445)
394 TIGR00563 rsmB ribosomal RNA s 97.1 0.0015 3.2E-08 60.9 7.4 106 127-237 234-372 (426)
395 PF01170 UPF0020: Putative RNA 97.1 0.0027 5.8E-08 51.8 8.0 66 47-114 10-83 (179)
396 PF04672 Methyltransf_19: S-ad 97.1 0.01 2.2E-07 51.1 11.7 109 124-237 61-194 (267)
397 PRK14903 16S rRNA methyltransf 97.1 0.0016 3.4E-08 60.7 7.3 45 128-172 234-281 (431)
398 TIGR00095 RNA methyltransferas 97.1 0.0033 7.1E-08 51.8 8.4 56 56-114 39-94 (189)
399 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0019 4.1E-08 58.8 7.6 62 50-114 188-250 (362)
400 PRK14902 16S rRNA methyltransf 97.1 0.0017 3.6E-08 60.9 7.2 45 128-172 247-294 (444)
401 PLN03075 nicotianamine synthas 97.0 0.003 6.5E-08 55.3 7.7 42 131-172 123-168 (296)
402 TIGR01444 fkbM_fam methyltrans 97.0 0.0037 8.1E-08 48.7 7.6 44 70-114 1-44 (143)
403 PF08003 Methyltransf_9: Prote 96.9 0.0028 6E-08 55.3 7.0 54 50-107 100-153 (315)
404 KOG1227|consensus 96.9 0.00071 1.5E-08 58.3 3.3 122 92-227 164-289 (351)
405 PRK14901 16S rRNA methyltransf 96.9 0.0025 5.3E-08 59.5 7.1 46 127-172 248-296 (434)
406 PRK11727 23S rRNA mA1618 methy 96.9 0.0027 5.9E-08 56.5 6.9 47 67-114 114-160 (321)
407 PHA01634 hypothetical protein 96.9 0.0062 1.3E-07 45.9 7.6 46 130-175 27-73 (156)
408 KOG1501|consensus 96.9 0.0023 4.9E-08 58.0 6.0 57 134-194 69-126 (636)
409 KOG1499|consensus 96.9 0.0023 5E-08 56.6 5.8 48 64-114 57-104 (346)
410 PRK05134 bifunctional 3-demeth 96.8 0.0045 9.8E-08 52.6 7.4 47 65-114 46-92 (233)
411 KOG3987|consensus 96.8 0.0003 6.5E-09 57.4 -0.1 90 130-233 111-207 (288)
412 PLN02366 spermidine synthase 96.8 0.027 5.8E-07 50.0 12.2 86 65-163 89-175 (308)
413 PF11968 DUF3321: Putative met 96.8 0.0044 9.6E-08 51.4 6.6 124 79-236 11-152 (219)
414 PRK00050 16S rRNA m(4)C1402 me 96.8 0.0045 9.7E-08 54.4 7.0 76 129-211 17-99 (296)
415 PF11599 AviRa: RRNA methyltra 96.8 0.031 6.7E-07 46.2 11.3 62 53-114 35-99 (246)
416 TIGR01983 UbiG ubiquinone bios 96.8 0.0034 7.4E-08 52.9 6.2 45 67-114 45-89 (224)
417 KOG1540|consensus 96.7 0.0039 8.4E-08 52.8 6.1 25 128-152 97-121 (296)
418 PRK00811 spermidine synthase; 96.7 0.0059 1.3E-07 53.6 7.5 48 66-114 75-122 (283)
419 PRK15128 23S rRNA m(5)C1962 me 96.7 0.005 1.1E-07 56.6 7.3 48 65-114 218-265 (396)
420 PF07091 FmrO: Ribosomal RNA m 96.7 0.011 2.5E-07 50.1 8.8 99 129-235 103-210 (251)
421 KOG0024|consensus 96.7 0.053 1.1E-06 47.7 13.0 112 62-236 164-276 (354)
422 PF06962 rRNA_methylase: Putat 96.7 0.0091 2E-07 46.3 7.4 78 155-236 1-95 (140)
423 PRK11524 putative methyltransf 96.7 0.0071 1.5E-07 53.1 7.7 46 130-175 207-252 (284)
424 KOG4058|consensus 96.7 0.021 4.6E-07 44.3 9.1 100 130-235 71-174 (199)
425 COG2265 TrmA SAM-dependent met 96.6 0.017 3.6E-07 53.7 10.1 63 49-114 273-337 (432)
426 PF01795 Methyltransf_5: MraW 96.6 0.0057 1.2E-07 53.9 6.5 61 51-114 6-66 (310)
427 COG0286 HsdM Type I restrictio 96.6 0.036 7.7E-07 52.6 12.0 66 45-112 166-234 (489)
428 TIGR00417 speE spermidine synt 96.6 0.048 1.1E-06 47.5 12.0 48 66-114 71-118 (270)
429 PLN02589 caffeoyl-CoA O-methyl 96.5 0.0064 1.4E-07 52.1 6.3 51 123-173 71-124 (247)
430 COG3963 Phospholipid N-methylt 96.5 0.01 2.2E-07 47.1 6.6 63 49-113 32-94 (194)
431 PF05401 NodS: Nodulation prot 96.5 0.0035 7.6E-08 51.3 4.2 45 67-114 43-87 (201)
432 PF02475 Met_10: Met-10+ like- 96.5 0.0089 1.9E-07 49.6 6.6 70 43-114 78-147 (200)
433 PRK09880 L-idonate 5-dehydroge 96.5 0.015 3.3E-07 52.3 8.8 98 128-234 166-267 (343)
434 cd02440 AdoMet_MTases S-adenos 96.4 0.0073 1.6E-07 43.1 5.3 39 70-110 1-39 (107)
435 PF01555 N6_N4_Mtase: DNA meth 96.4 0.012 2.5E-07 49.5 7.1 43 129-171 189-231 (231)
436 PF08123 DOT1: Histone methyla 96.3 0.015 3.3E-07 48.4 7.2 105 127-231 38-156 (205)
437 COG5459 Predicted rRNA methyla 96.3 0.029 6.3E-07 49.7 8.9 125 108-237 87-229 (484)
438 PF05958 tRNA_U5-meth_tr: tRNA 96.3 0.0079 1.7E-07 54.5 5.8 62 50-114 178-240 (352)
439 cd00315 Cyt_C5_DNA_methylase C 96.3 0.015 3.2E-07 50.9 7.1 69 134-213 2-73 (275)
440 PF02384 N6_Mtase: N-6 DNA Met 96.2 0.012 2.7E-07 52.2 6.6 68 44-113 25-98 (311)
441 PF10294 Methyltransf_16: Puta 96.2 0.02 4.4E-07 46.4 7.2 49 64-114 42-90 (173)
442 KOG3010|consensus 96.2 0.01 2.3E-07 49.8 5.3 47 65-114 30-77 (261)
443 PRK08306 dipicolinate synthase 96.2 0.14 3E-06 45.3 12.9 153 62-236 88-244 (296)
444 KOG1271|consensus 96.2 0.016 3.4E-07 46.7 5.9 63 51-114 45-113 (227)
445 KOG3115|consensus 96.1 0.03 6.4E-07 45.9 7.5 104 131-234 60-184 (249)
446 PRK09424 pntA NAD(P) transhydr 96.1 0.059 1.3E-06 51.1 10.6 97 129-234 162-286 (509)
447 COG3129 Predicted SAM-dependen 96.1 0.019 4.1E-07 47.9 6.4 85 131-218 78-169 (292)
448 COG1041 Predicted DNA modifica 96.1 0.011 2.3E-07 52.7 5.2 63 48-115 180-242 (347)
449 PRK03612 spermidine synthase; 96.1 0.053 1.2E-06 51.8 10.3 46 65-111 295-340 (521)
450 PRK13699 putative methylase; P 96.1 0.018 3.9E-07 48.9 6.4 47 129-175 161-207 (227)
451 PF04989 CmcI: Cephalosporin h 96.0 0.051 1.1E-06 45.0 8.7 99 130-234 31-148 (206)
452 cd08230 glucose_DH Glucose deh 96.0 0.042 9.1E-07 49.7 9.0 95 129-233 170-269 (355)
453 PF01728 FtsJ: FtsJ-like methy 96.0 0.014 3E-07 47.5 5.3 48 56-103 8-59 (181)
454 PRK01581 speE spermidine synth 95.9 0.026 5.7E-07 50.9 7.1 45 65-110 148-192 (374)
455 PF05724 TPMT: Thiopurine S-me 95.9 0.017 3.7E-07 48.6 5.5 44 65-111 35-78 (218)
456 PF09445 Methyltransf_15: RNA 95.8 0.02 4.3E-07 45.7 5.3 44 69-115 1-44 (163)
457 COG1565 Uncharacterized conser 95.8 0.073 1.6E-06 47.6 9.1 89 77-175 32-131 (370)
458 PF02005 TRM: N2,N2-dimethylgu 95.8 0.038 8.3E-07 50.4 7.6 98 132-233 50-154 (377)
459 KOG2793|consensus 95.8 0.09 1.9E-06 44.9 9.3 105 131-236 86-202 (248)
460 KOG4589|consensus 95.7 0.03 6.4E-07 45.3 5.9 97 127-239 65-190 (232)
461 COG1063 Tdh Threonine dehydrog 95.7 0.12 2.6E-06 46.8 10.5 99 129-235 166-271 (350)
462 PRK04338 N(2),N(2)-dimethylgua 95.7 0.052 1.1E-06 49.7 8.2 47 67-114 57-103 (382)
463 PF02390 Methyltransf_4: Putat 95.7 0.039 8.5E-07 45.6 6.7 44 70-114 20-63 (195)
464 TIGR02822 adh_fam_2 zinc-bindi 95.6 0.11 2.4E-06 46.6 10.1 93 127-234 161-255 (329)
465 KOG2187|consensus 95.6 0.011 2.3E-07 55.0 3.4 55 55-114 373-427 (534)
466 KOG1500|consensus 95.6 0.027 5.9E-07 49.6 5.7 46 66-114 176-221 (517)
467 cd08254 hydroxyacyl_CoA_DH 6-h 95.5 0.21 4.5E-06 44.5 11.5 98 124-233 158-263 (338)
468 PRK13256 thiopurine S-methyltr 95.4 0.034 7.4E-07 47.0 5.6 44 65-111 41-84 (226)
469 KOG1562|consensus 95.4 0.052 1.1E-06 47.1 6.6 103 130-233 120-236 (337)
470 PF03602 Cons_hypoth95: Conser 95.2 0.076 1.6E-06 43.4 6.9 60 53-114 28-87 (183)
471 TIGR03451 mycoS_dep_FDH mycoth 95.1 0.11 2.3E-06 47.2 8.3 100 126-234 171-277 (358)
472 cd08237 ribitol-5-phosphate_DH 95.0 0.15 3.2E-06 46.0 8.7 90 128-233 160-256 (341)
473 PF00107 ADH_zinc_N: Zinc-bind 94.8 0.088 1.9E-06 40.0 6.0 84 142-236 2-92 (130)
474 PF03291 Pox_MCEL: mRNA cappin 94.8 0.11 2.3E-06 46.7 7.3 45 67-114 62-107 (331)
475 cd05188 MDR Medium chain reduc 94.8 0.24 5.1E-06 42.3 9.3 101 124-235 127-234 (271)
476 PF09243 Rsm22: Mitochondrial 94.8 0.12 2.5E-06 45.2 7.4 61 55-115 19-81 (274)
477 KOG2798|consensus 94.8 0.14 3.1E-06 44.8 7.6 39 132-170 151-189 (369)
478 PRK10742 putative methyltransf 94.7 0.13 2.8E-06 43.9 7.0 54 56-114 77-132 (250)
479 COG0116 Predicted N6-adenine-s 94.6 0.13 2.7E-06 46.6 7.2 70 44-115 170-277 (381)
480 KOG2915|consensus 94.6 0.12 2.6E-06 44.4 6.6 51 122-172 96-149 (314)
481 cd08283 FDH_like_1 Glutathione 94.6 0.19 4.2E-06 46.1 8.6 102 125-234 178-307 (386)
482 PRK11760 putative 23S rRNA C24 94.6 0.045 9.8E-07 48.8 4.1 35 65-102 209-243 (357)
483 PHA01634 hypothetical protein 94.6 0.15 3.3E-06 38.6 6.3 47 66-114 27-73 (156)
484 TIGR01202 bchC 2-desacetyl-2-h 94.5 0.2 4.3E-06 44.5 8.3 86 130-233 143-231 (308)
485 cd08281 liver_ADH_like1 Zinc-d 94.5 0.18 4E-06 45.9 8.3 99 126-234 186-291 (371)
486 COG1867 TRM1 N2,N2-dimethylgua 94.5 0.18 3.9E-06 45.3 7.7 98 132-234 53-155 (380)
487 COG2520 Predicted methyltransf 94.5 0.089 1.9E-06 47.1 5.9 68 44-114 166-233 (341)
488 KOG0822|consensus 94.5 0.21 4.6E-06 46.7 8.3 94 132-230 368-475 (649)
489 PF07279 DUF1442: Protein of u 94.4 0.7 1.5E-05 38.4 10.4 102 130-235 40-150 (218)
490 COG0220 Predicted S-adenosylme 94.3 0.26 5.6E-06 41.7 8.1 45 69-114 50-94 (227)
491 KOG1253|consensus 94.2 0.052 1.1E-06 50.3 3.9 100 130-233 108-216 (525)
492 PF11599 AviRa: RRNA methyltra 94.1 0.14 3E-06 42.5 5.7 105 130-234 50-215 (246)
493 PLN02823 spermine synthase 94.1 0.43 9.3E-06 42.9 9.5 84 66-162 102-185 (336)
494 KOG1099|consensus 94.0 0.14 3E-06 42.9 5.6 88 132-235 42-165 (294)
495 cd08239 THR_DH_like L-threonin 93.8 0.25 5.5E-06 44.2 7.6 99 127-234 159-263 (339)
496 PF05219 DREV: DREV methyltran 93.8 0.14 3E-06 43.9 5.3 40 67-109 94-133 (265)
497 cd08232 idonate-5-DH L-idonate 93.7 0.48 1E-05 42.3 9.3 99 123-233 158-262 (339)
498 TIGR03366 HpnZ_proposed putati 93.7 0.23 4.9E-06 43.4 6.9 95 129-233 118-218 (280)
499 COG0604 Qor NADPH:quinone redu 93.7 0.41 8.9E-06 43.0 8.6 105 123-236 134-244 (326)
500 PF05185 PRMT5: PRMT5 arginine 93.6 0.24 5.3E-06 46.3 7.2 46 68-113 187-235 (448)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-32 Score=220.32 Aligned_cols=186 Identities=33% Similarity=0.529 Sum_probs=173.6
Q ss_pred eeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHH
Q psy7837 9 LTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAM 88 (299)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~ 88 (299)
...+++...++|+.|+ |+.+...+|.|.++++++|++++.|+++++|++.|. +++|++||||||||||.++.+++.
T Consensus 18 ~~v~~A~~~vPRe~FV--p~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l 93 (209)
T COG2518 18 ERVLKAFLAVPRELFV--PAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARL 93 (209)
T ss_pred HHHHHHHHhCCHHhcc--CchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHH
Confidence 3456788999999999 777999999999999999999999999999999999 999999999999999999999999
Q ss_pred hCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHH
Q psy7837 89 VGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR 168 (299)
Q Consensus 89 ~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~ 168 (299)
++ +|+++|+.+.+.+.|++++..
T Consensus 94 ~~---~V~siEr~~~L~~~A~~~L~~------------------------------------------------------ 116 (209)
T COG2518 94 VG---RVVSIERIEELAEQARRNLET------------------------------------------------------ 116 (209)
T ss_pred hC---eEEEEEEcHHHHHHHHHHHHH------------------------------------------------------
Confidence 87 699999999999999999988
Q ss_pred HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEee
Q psy7837 169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248 (299)
Q Consensus 169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~ 248 (299)
.+..|+.++++|....+++.++||.|++.+....+|+.+.++|++||+|+++++ ....+.+..+.+.
T Consensus 117 ------------lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG-~~~~q~l~~~~k~ 183 (209)
T COG2518 117 ------------LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG-SGPAQRLLRITKD 183 (209)
T ss_pred ------------cCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc-cCCcEEEEEEEEc
Confidence 466789999999999999989999999999999999999999999999999999 4445889999999
Q ss_pred cCCceEEEEecceeccccccc
Q psy7837 249 VNGSVKTTVIHPHVYIHELKS 269 (299)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ 269 (299)
.++.|..+.++++.|+ |+.+
T Consensus 184 ~~~~~~~~~l~~v~~v-Pl~~ 203 (209)
T COG2518 184 GDGNFERRDLFNVRFV-PLVG 203 (209)
T ss_pred CCCcEEEeeeccceee-ecCC
Confidence 8889999999999999 9987
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.97 E-value=1.8e-31 Score=221.70 Aligned_cols=194 Identities=35% Similarity=0.546 Sum_probs=164.5
Q ss_pred CceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHH
Q psy7837 6 YPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLF 85 (299)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~l 85 (299)
......++++..|+|+.|+ |+.+...+|.|.+++++.+++++.|++++.+++.|. ++||++|||||||+||.|+.+
T Consensus 15 v~~~~v~~A~~~VpR~~Fv--p~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAll 90 (209)
T PF01135_consen 15 VTDPRVLDAFRAVPREDFV--PPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALL 90 (209)
T ss_dssp S-SHHHHHHHHHS-GGGCS--SCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHH
T ss_pred CCCHHHHHHHHhCCHHHhC--chhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHH
Confidence 3455677899999999999 556888999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHH
Q psy7837 86 GAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL 165 (299)
Q Consensus 86 a~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~ 165 (299)
+..+++.|+|+++|+++.+.+.|++++..
T Consensus 91 a~lvg~~g~Vv~vE~~~~l~~~A~~~l~~--------------------------------------------------- 119 (209)
T PF01135_consen 91 AHLVGPVGRVVSVERDPELAERARRNLAR--------------------------------------------------- 119 (209)
T ss_dssp HHHHSTTEEEEEEESBHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHhcCccceEEEECccHHHHHHHHHHHHH---------------------------------------------------
Confidence 99999999999999999999999999987
Q ss_pred HHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeE
Q psy7837 166 CKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL 245 (299)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~ 245 (299)
....|+.++.+|....++..++||.|+++.....++..+.++|++||+|+++... ...+.+..+
T Consensus 120 ---------------~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~~-~~~~~l~~~ 183 (209)
T PF01135_consen 120 ---------------LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIGQ-GGSQRLVRI 183 (209)
T ss_dssp ---------------HTTHSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESS-SSSEEEEEE
T ss_pred ---------------hccCceeEEEcchhhccccCCCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEcc-CCceEEEEE
Confidence 3566999999999988877789999999999999999999999999999999988 667899999
Q ss_pred EeecCCceEEEEecceeccccccccc
Q psy7837 246 DKFVNGSVKTTVIHPHVYIHELKSLE 271 (299)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (299)
.|..++.++.+...++.|+ |+.+.+
T Consensus 184 ~k~~~g~~~~~~~~~~~fv-pl~~~~ 208 (209)
T PF01135_consen 184 TKKGDGEFSREELFPVRFV-PLVGGE 208 (209)
T ss_dssp EEETTTEEEEEEEEEE----B-BSCC
T ss_pred EEeCCCcEEEEEEeeEEEE-eccCCC
Confidence 9998899999999999999 998764
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=194.32 Aligned_cols=190 Identities=36% Similarity=0.517 Sum_probs=168.2
Q ss_pred ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837 7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86 (299)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la 86 (299)
.....+++...|+|+.|+ |+.+...+|.|.+++++.|+.++.|.+.+.+++.+. +++|++|||+|||+|+.+..++
T Consensus 20 ~~~~v~~a~~~v~R~~fv--p~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 20 KSKKVIDALLKVPRHLFV--PEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CCHHHHHHHHcCCHhhcC--CchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHH
Confidence 345567788999999999 667888999999999999999999999999999987 8999999999999999999999
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837 87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166 (299)
Q Consensus 87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~ 166 (299)
+.+++.++++++|+++.+++.+++++..
T Consensus 96 ~~~~~~~~V~~vE~~~~~~~~a~~~l~~---------------------------------------------------- 123 (212)
T PRK13942 96 EIVGKSGKVVTIERIPELAEKAKKTLKK---------------------------------------------------- 123 (212)
T ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence 9988888999999999999999998877
Q ss_pred HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837 167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246 (299)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~ 246 (299)
.+..+++++.+|....+...++||+|+++.....+++.+.++|||||+|++..... .+.+..++
T Consensus 124 --------------~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~~~--~~~~~~~~ 187 (212)
T PRK13942 124 --------------LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSY--SQELIRVE 187 (212)
T ss_pred --------------cCCCCeEEEECCcccCCCcCCCcCEEEECCCcccchHHHHHhhCCCcEEEEEEcCC--CcEEEEEE
Confidence 34568999999988766666889999999999999999999999999999998764 47777888
Q ss_pred eecCCceEEEEecceecccccccc
Q psy7837 247 KFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
+.. +.+..+.++++.|+ |+.+.
T Consensus 188 ~~~-~~~~~~~~~~~~f~-~~~~~ 209 (212)
T PRK13942 188 KDN-GKIIKKKLGEVAFV-PLIGK 209 (212)
T ss_pred EEC-CEEEEEEeccEEEE-ecccC
Confidence 854 67999999999999 88775
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.94 E-value=8.3e-26 Score=188.92 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=162.9
Q ss_pred ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837 7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86 (299)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la 86 (299)
.....+++...++|+.|+ |+.+...+|.|.++++..++.++.|.+.+.+++.+. ++++++|||+|||+|+.+..++
T Consensus 16 ~~~~v~~a~~~vpR~~fv--~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 16 KSERVKKAMLSVPREEFV--MPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCHHHHHHHHhCCHhHcC--ChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHH
Confidence 345677889999999999 556788899999999999999999999999999886 7899999999999999999999
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837 87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166 (299)
Q Consensus 87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~ 166 (299)
+.+++.++++++|+++.+++.+++++...
T Consensus 92 ~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------------------------------------------- 120 (205)
T PRK13944 92 EAIERRGKVYTVEIVKELAIYAAQNIERL--------------------------------------------------- 120 (205)
T ss_pred HhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------------------------------------------
Confidence 99887789999999999999998888761
Q ss_pred HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837 167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246 (299)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~ 246 (299)
....+++++.+|+...++..++||+|+++....++++++.++|+|||+|+++..... .+.+..++
T Consensus 121 --------------~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~~~~~-~~~~~~~~ 185 (205)
T PRK13944 121 --------------GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV-GQVLYKVV 185 (205)
T ss_pred --------------CCCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEEcCCC-ceEEEEEE
Confidence 223468999999987665557899999999999999999999999999999886543 46677788
Q ss_pred eecCCceEEEEecceeccccc
Q psy7837 247 KFVNGSVKTTVIHPHVYIHEL 267 (299)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~ 267 (299)
+. .+.+..+.+..+.|+ |+
T Consensus 186 ~~-~~~~~~~~~~~~~f~-pl 204 (205)
T PRK13944 186 KR-GEKVEKRAITYVLFV-PL 204 (205)
T ss_pred Ee-CCEEEEEEeceEEEE-ec
Confidence 85 456999999999999 76
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.93 E-value=6.4e-25 Score=185.11 Aligned_cols=193 Identities=33% Similarity=0.543 Sum_probs=167.6
Q ss_pred ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837 7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86 (299)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la 86 (299)
.....+++...++|+.|+ |+.+...+|.+.+++++.++.++.|.+.+.+++.+. +++|++|||+|||+|+++..++
T Consensus 21 ~~~~v~~a~~~v~R~~f~--~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 21 KSKRVIDALLSVPREEFV--PEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred CCHHHHHHHHhCChhhhC--CchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHH
Confidence 345567788899999999 566788999999999999999999999999999987 8999999999999999999999
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837 87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166 (299)
Q Consensus 87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~ 166 (299)
+..+++++|+++|+++.+++.+++++..
T Consensus 97 ~~~~~~g~V~~vD~~~~~~~~A~~~~~~---------------------------------------------------- 124 (215)
T TIGR00080 97 EIVGRDGLVVSIERIPELAEKAERRLRK---------------------------------------------------- 124 (215)
T ss_pred HHhCCCCEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence 9988888999999999999999988877
Q ss_pred HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837 167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246 (299)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~ 246 (299)
....+++++.+|+........+||+|+++.....+++.+.+.|+|||++++.... ..+.+..+.
T Consensus 125 --------------~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~~--~~~~~~~~~ 188 (215)
T TIGR00080 125 --------------LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGE--YLQVLKRAE 188 (215)
T ss_pred --------------CCCCCeEEEECCcccCCcccCCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEcC--CceEEEEEE
Confidence 3457899999998876555578999999999999999999999999999999876 346667777
Q ss_pred eecCCceEEEEecceeccccccccccc
Q psy7837 247 KFVNGSVKTTVIHPHVYIHELKSLEDQ 273 (299)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (299)
+. .+.+....+.++.|. |+..++.+
T Consensus 189 ~~-~~~~~~~~~~~~~~~-pl~~~~~~ 213 (215)
T TIGR00080 189 KR-GGEIIIKDVEPVAFV-PLVGGEGF 213 (215)
T ss_pred Ee-CCEEEEEEeeeEEEE-eCCCCccC
Confidence 64 566999999999999 99876543
No 6
>KOG1661|consensus
Probab=99.91 E-value=1.9e-23 Score=167.49 Aligned_cols=206 Identities=33% Similarity=0.568 Sum_probs=180.4
Q ss_pred ccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCC
Q psy7837 13 DIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS 92 (299)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~ 92 (299)
.++..++|+.|. |..++..+|.|.+..++.+..++.|++++.+++.|...++||-+.||+|+|+||++.+++..++.+
T Consensus 30 ~A~~a~dR~dy~--p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~ 107 (237)
T KOG1661|consen 30 QAMRATDRSDYA--PRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGAT 107 (237)
T ss_pred HHHHhhchhhcc--ccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCC
Confidence 456678899998 556778899999999999999999999999999999999999999999999999999999999988
Q ss_pred ceE-EEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837 93 GKV-YTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK 171 (299)
Q Consensus 93 g~v-~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~ 171 (299)
|.. +|+|..+++++.+.+++.+. +..++. ..
T Consensus 108 g~~~~GIEh~~eLVe~Sk~nl~k~--------------------------------------------i~~~e~----~~ 139 (237)
T KOG1661|consen 108 GGNVHGIEHIPELVEYSKKNLDKD--------------------------------------------ITTSES----SS 139 (237)
T ss_pred CccccchhhhHHHHHHHHHHHHhh--------------------------------------------ccCchh----hh
Confidence 875 99999999999999999883 000000 11
Q ss_pred HHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCC
Q psy7837 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG 251 (299)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~ 251 (299)
. ....++.++.+|......+.++||.|++.+....+++++..+|++||+|+++.......+.+....+..++
T Consensus 140 ~--------~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~g 211 (237)
T KOG1661|consen 140 K--------LKRGELSIVVGDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDG 211 (237)
T ss_pred h--------hccCceEEEeCCccccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccC
Confidence 1 23468889999999999888999999999999999999999999999999999988888999999999999
Q ss_pred ceEEEEecceeccccccccccccccc
Q psy7837 252 SVKTTVIHPHVYIHELKSLEDQKRMF 277 (299)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (299)
....+..+.+.|+ |++....+...|
T Consensus 212 ki~~~~~f~v~yv-Plt~~~~q~~~~ 236 (237)
T KOG1661|consen 212 KIKLRTLFSVRYV-PLTSRESQPSRF 236 (237)
T ss_pred ceeeeEeeceEEE-eccccccccCCC
Confidence 9999999999999 999887665544
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.90 E-value=3e-22 Score=168.57 Aligned_cols=188 Identities=29% Similarity=0.449 Sum_probs=159.3
Q ss_pred ceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHH
Q psy7837 7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86 (299)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la 86 (299)
....++++...++|+.|+ |+.+...+|.+.++++..++.+++|.+.+.+++.+. ++++.+|||+|||+|+.+..++
T Consensus 22 ~~~~~~~a~~~~~r~~f~--p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 22 LDERVLEAIEATPRELFV--PEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCHHHHHHHHcCCHhHcC--CchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHH
Confidence 445677888899999999 556888899999999999999999999999998876 8899999999999999999888
Q ss_pred HHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHH
Q psy7837 87 AMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166 (299)
Q Consensus 87 ~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~ 166 (299)
+.. ++++++|+++.+++.+++++..
T Consensus 98 ~~~---~~v~~vd~~~~~~~~a~~~~~~---------------------------------------------------- 122 (212)
T PRK00312 98 HLV---RRVFSVERIKTLQWEAKRRLKQ---------------------------------------------------- 122 (212)
T ss_pred HHh---CEEEEEeCCHHHHHHHHHHHHH----------------------------------------------------
Confidence 775 3689999998888888888776
Q ss_pred HHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEE
Q psy7837 167 KRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246 (299)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~ 246 (299)
....+++++.+|....+...++||+|+++....++++.+.+.|+|||.+++... ....+.+..+.
T Consensus 123 --------------~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~-~~~~~~~~~~~ 187 (212)
T PRK00312 123 --------------LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVG-GEEQQLLTRVR 187 (212)
T ss_pred --------------CCCCceEEEECCcccCCCcCCCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc-CCCceEEEEEE
Confidence 345579999999876555557899999999999999999999999999999998 44456667777
Q ss_pred eecCCceEEEEecceecccccccc
Q psy7837 247 KFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
+ .++.+..+.++++.|. |+..+
T Consensus 188 ~-~~~~~~~~~~~~~~~~-p~~~~ 209 (212)
T PRK00312 188 K-RGGRFEREVLEEVRFV-PLVKG 209 (212)
T ss_pred E-cCCeEEEEEEccEEEE-ecCCC
Confidence 6 5667999999999999 77754
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.85 E-value=4.6e-20 Score=162.93 Aligned_cols=186 Identities=27% Similarity=0.409 Sum_probs=149.1
Q ss_pred eeeccCCCcCcCccccCCCCC-Cccccccccccc-ccc---cccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHH
Q psy7837 10 TLLDIPHNIGHNAFMESPSDY-PVLTLLDIPHNI-GHN---AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL 84 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~-~~~---~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~ 84 (299)
..+++...|+|+.|+ |+.+ ...+|.|.++++ ..+ +.++.|.+.+.+++.+. ++++++|||+|||+|+++..
T Consensus 22 ~vl~a~~~vpRe~Fv--p~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~ 97 (322)
T PRK13943 22 HIAKAFLEVPREEFL--TKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAV 97 (322)
T ss_pred HHHHHHHcCCHHHcC--CcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHH
Confidence 567888999999999 5555 478999999886 555 57788999999988876 88999999999999999999
Q ss_pred HHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChH
Q psy7837 85 FGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKN 164 (299)
Q Consensus 85 la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~ 164 (299)
+++..+..++++++|+++.+++.+++++..
T Consensus 98 LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~-------------------------------------------------- 127 (322)
T PRK13943 98 MSRVVGEKGLVVSVEYSRKICEIAKRNVRR-------------------------------------------------- 127 (322)
T ss_pred HHHhcCCCCEEEEEECCHHHHHHHHHHHHH--------------------------------------------------
Confidence 999887678899999999999999888876
Q ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC-Ccceee
Q psy7837 165 LCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED-DIMTLE 243 (299)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-~~~~~~ 243 (299)
.+..++.++.+|+.......++||+|+++.....+++.+.+.|+|||++++...... ..+...
T Consensus 128 ----------------~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~ 191 (322)
T PRK13943 128 ----------------LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAF 191 (322)
T ss_pred ----------------cCCCcEEEEeCChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceE
Confidence 345689999999876555556799999999988899999999999999999875431 223334
Q ss_pred eEEeecCCceEEEEecceeccccc
Q psy7837 244 LLDKFVNGSVKTTVIHPHVYIHEL 267 (299)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (299)
...+. .+.++......+.|. +.
T Consensus 192 ~~~r~-~~~~~~~~~~~~~~l-~~ 213 (322)
T PRK13943 192 LFKKK-DPYLVGNYKLETRFI-KA 213 (322)
T ss_pred EEEec-CCCceEEEEEEeeEE-cc
Confidence 44443 345777777777777 44
No 9
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5e-17 Score=135.52 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=116.5
Q ss_pred ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837 39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118 (299)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~ 118 (299)
...+.++.++.+|.....++..+. +.||++|+|+|+|||.+|++|+..+++.|+|+++|+.++..+.|++++...
T Consensus 68 ~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--- 142 (256)
T COG2519 68 LLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--- 142 (256)
T ss_pred HHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh---
Confidence 334678899999999999999998 999999999999999999999999999999999999999999999999983
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP 198 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 198 (299)
...+++.+..+|+.....
T Consensus 143 --------------------------------------------------------------~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 143 --------------------------------------------------------------GLGDRVTLKLGDVREGID 160 (256)
T ss_pred --------------------------------------------------------------ccccceEEEecccccccc
Confidence 344558999999987666
Q ss_pred CCCCeeEEEecchhhh-HHHHHHHhccCCcEEEEEecCCC
Q psy7837 199 DAAPYDVIYISQAIRD-IPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 199 ~~~~fD~v~~~~~~~~-~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+. .||.|+.+.+-+| ..+++.+.|+|||.+++..+..+
T Consensus 161 ~~-~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 161 EE-DVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cc-ccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 53 8999999998766 67899999999999999998765
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=2.6e-16 Score=132.38 Aligned_cols=113 Identities=31% Similarity=0.496 Sum_probs=95.9
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
..+++.+. +++|++|||+|||||-++..+++..+ +|+++++|+++.|++.+++....
T Consensus 41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~-------------------- 97 (238)
T COG2226 41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK-------------------- 97 (238)
T ss_pred HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc--------------------
Confidence 33444444 55999999999999999999999998 89999999999999999988877
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 214 (299)
.+..+++|+++|+...+.++++||+|.+...+++
T Consensus 98 ----------------------------------------------~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrn 131 (238)
T COG2226 98 ----------------------------------------------KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRN 131 (238)
T ss_pred ----------------------------------------------cCccceEEEEechhhCCCCCCccCEEEeeehhhc
Confidence 3445599999999998888899999999998865
Q ss_pred H------HHHHHHhccCCcEEEEEecCC
Q psy7837 215 I------PWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 215 ~------~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+ .+++.|+|||||++++.....
T Consensus 132 v~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 132 VTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 4 469999999999988876544
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=8.9e-16 Score=115.71 Aligned_cols=99 Identities=27% Similarity=0.414 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
|+.+|||+|||+|.++..+++ .+.+|+++|+|+.+++.+++++... ....+++++++|+........+||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE----GLSDRITFVQGDAEFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT----TTTTTEEEEESCCHGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCCCeEEEECccccCcccCCCCCEEEE
Confidence 588999999999999999999 6899999999999999999999442 4678999999999212223356999999
Q ss_pred cc-hhh---------hHHHHHHHhccCCcEEEEEe
Q psy7837 209 SQ-AIR---------DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 209 ~~-~~~---------~~~~~~~~~L~~gG~lv~~~ 233 (299)
.. ... .+.+++.+.|+|||++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98 332 13568999999999999875
No 12
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.67 E-value=3e-16 Score=133.17 Aligned_cols=134 Identities=28% Similarity=0.377 Sum_probs=106.2
Q ss_pred ccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhH
Q psy7837 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116 (299)
Q Consensus 37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~ 116 (299)
+-.+.+.++.++.+|.....++..+. ++||++|+|.|+|+|.+|..|++.+++.|+|+++|+.++..+.|++++...
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~- 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH- 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-
Confidence 34556788999999999999999998 999999999999999999999999999999999999999999999999883
Q ss_pred HHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-
Q psy7837 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR- 195 (299)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~- 195 (299)
+...++++.+.|+..
T Consensus 89 ----------------------------------------------------------------gl~~~v~~~~~Dv~~~ 104 (247)
T PF08704_consen 89 ----------------------------------------------------------------GLDDNVTVHHRDVCEE 104 (247)
T ss_dssp ----------------------------------------------------------------TCCTTEEEEES-GGCG
T ss_pred ----------------------------------------------------------------CCCCCceeEecceecc
Confidence 455799999999963
Q ss_pred CCCC--CCCeeEEEecchhhh-HHHHHHHhc-cCCcEEEEEecCCC
Q psy7837 196 GYPD--AAPYDVIYISQAIRD-IPWHIVDQL-KLGGRMLFIKGHED 237 (299)
Q Consensus 196 ~~~~--~~~fD~v~~~~~~~~-~~~~~~~~L-~~gG~lv~~~~~~~ 237 (299)
.+.. ...+|.|+.+.+-.| ..+.+.+.| ++||++++..+.-+
T Consensus 105 g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 105 GFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp --STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred cccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 3422 267999999998877 678999999 89999999988754
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.67 E-value=5e-16 Score=131.79 Aligned_cols=113 Identities=32% Similarity=0.502 Sum_probs=81.7
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
+.+++.+. .++|.+|||+|||+|.++..+++.++++++++++|+++.|++.+++.+..
T Consensus 37 ~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~-------------------- 94 (233)
T PF01209_consen 37 RKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR-------------------- 94 (233)
T ss_dssp SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH--------------------
T ss_pred HHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh--------------------
Confidence 34555554 78999999999999999999999998889999999999999999988877
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 214 (299)
....+++++++|+...+.++++||+|++...++.
T Consensus 95 ----------------------------------------------~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn 128 (233)
T PF01209_consen 95 ----------------------------------------------EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRN 128 (233)
T ss_dssp ----------------------------------------------TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG
T ss_pred ----------------------------------------------hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHh
Confidence 3455999999999987777799999999998865
Q ss_pred HH------HHHHHhccCCcEEEEEecC
Q psy7837 215 IP------WHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 215 ~~------~~~~~~L~~gG~lv~~~~~ 235 (299)
++ ++++++|||||++++....
T Consensus 129 ~~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 129 FPDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 44 6999999999999886543
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=6.1e-15 Score=138.73 Aligned_cols=100 Identities=28% Similarity=0.293 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++... ...++++..+|......+.++||+|++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~I~s 338 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG------RKCSVEFEVADCTKKTYPDNSFDVIYS 338 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc------CCCceEEEEcCcccCCCCCCCEEEEEE
Confidence 35679999999999999988875 78999999999999999988653 345799999998875545578999999
Q ss_pred cchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837 209 SQAIRDI------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 235 (299)
..++.++ .+++.++|+|||.+++....
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 8887644 46899999999999998643
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=7.1e-15 Score=117.63 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=122.9
Q ss_pred ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy7837 47 FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 126 (299)
Q Consensus 47 ~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~ 126 (299)
.+..+.+.+..+..|. +++|+.++|||||+|..+...+ ..++.++++++|.+++.++..+++..+
T Consensus 16 p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~------------ 80 (187)
T COG2242 16 PMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAAR------------ 80 (187)
T ss_pred CCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHH------------
Confidence 3566677777788887 9999999999999999999999 888899999999999999999988887
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
.+.+|++++.+++...+....++|.|
T Consensus 81 ------------------------------------------------------fg~~n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 81 ------------------------------------------------------FGVDNLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred ------------------------------------------------------hCCCcEEEEeccchHhhcCCCCCCEE
Confidence 46889999999998766554579999
Q ss_pred Eecch--hhhHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccccccccccceecCCCC
Q psy7837 207 YISQA--IRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPP 284 (299)
Q Consensus 207 ~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (299)
|+... ++.+.+.+...||+||++|+.....+....+....+...+. +...+ ..+.......|+.+...+
T Consensus 107 FIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v--------~is~~~~lg~~~~~~~~n 177 (187)
T COG2242 107 FIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQV--------QISRGKPLGGGTMFRPVN 177 (187)
T ss_pred EECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEE--------EeecceeccCeeEeecCC
Confidence 99886 45678899999999999999987765432222222222221 22221 112344555666666666
Q ss_pred CCccc
Q psy7837 285 PQMDL 289 (299)
Q Consensus 285 ~~~~~ 289 (299)
|++.|
T Consensus 178 Pv~i~ 182 (187)
T COG2242 178 PVFII 182 (187)
T ss_pred CEEEE
Confidence 66433
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.60 E-value=1.8e-15 Score=125.33 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=87.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
.++.+|||+|||-|.++..+|+.|+.|+++|+++.+++.|+..+.. ...++++.+....+.....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e------~gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALE------SGVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhh------ccccccchhhhHHHHHhcCCCccEEEEh
Confidence 5699999999999999999999999999999999999999998776 2334667777766654444789999999
Q ss_pred chhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837 210 QAIRDIP------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 210 ~~~~~~~------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.+++|++ ..+.+++||||.+++++.+..
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9998876 368999999999999987754
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=3.5e-14 Score=116.40 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=87.6
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY 203 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 203 (299)
...+.++.+|||+|||+|..+..+++. +.+|+++|.++.+++.++++++. ....+++++.+|+..... .++|
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~-----~~l~~i~~~~~d~~~~~~-~~~f 113 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE-----LGLKNVTVVHGRAEEFGQ-EEKF 113 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----cCCCCEEEEeccHhhCCC-CCCc
Confidence 334455899999999999999988864 67899999999999999999988 345569999999887544 5789
Q ss_pred eEEEecch--hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837 204 DVIYISQA--IRDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 204 D~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
|+|+++.. +..+.+.+.++|+|||++++..+..
T Consensus 114 DlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 114 DVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999764 3467789999999999999997664
No 18
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.58 E-value=4.6e-14 Score=122.30 Aligned_cols=109 Identities=28% Similarity=0.407 Sum_probs=89.4
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+.++++|||+|||+|.++..+++..++.++++++|+++.|++.+++.....
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~----------------------------- 121 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK----------------------------- 121 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh-----------------------------
Confidence 788999999999999999999998877789999999999999887765320
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHH
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWH 218 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~ 218 (299)
.. ....+++++++|+...+.++++||+|++..+++++ ..+
T Consensus 122 -----------------------------~~-----~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~e 167 (261)
T PLN02233 122 -----------------------------AK-----SCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQE 167 (261)
T ss_pred -----------------------------hh-----ccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHH
Confidence 00 23458999999998766666889999998887654 468
Q ss_pred HHHhccCCcEEEEEecCC
Q psy7837 219 IVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 219 ~~~~L~~gG~lv~~~~~~ 236 (299)
+.++|||||++++.....
T Consensus 168 i~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 168 MYRVLKPGSRVSILDFNK 185 (261)
T ss_pred HHHHcCcCcEEEEEECCC
Confidence 999999999999986554
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=1.7e-14 Score=127.80 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=88.0
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..++.+|||||||+|.++..+++.|.+|+++|.++.+++.++++.+.. ....+++++++|+.......++||+|++
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~----~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMD----PVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CcccceeEEecCHHHhhhccCCCCEEEE
Confidence 356789999999999999999999999999999999999999886552 2335899999998765445578999999
Q ss_pred cchhhhHH------HHHHHhccCCcEEEEEecCC
Q psy7837 209 SQAIRDIP------WHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 209 ~~~~~~~~------~~~~~~L~~gG~lv~~~~~~ 236 (299)
..+++++. +++.++|||||.+++.+.+.
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99987654 58999999999999997654
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.56 E-value=6e-14 Score=126.10 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++.. +...+++++++|+.....+.++||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~----g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ----GLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 67889999999999999999886 789999999999999999988763 3446899999999876556689999999
Q ss_pred cchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837 209 SQAIRDI------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 235 (299)
..+++++ .+++.++|||||.+++....
T Consensus 193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 193 MESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8887654 36899999999999997643
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=2.6e-14 Score=103.95 Aligned_cols=88 Identities=28% Similarity=0.462 Sum_probs=74.7
Q ss_pred EEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837 136 LDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214 (299)
Q Consensus 136 LDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 214 (299)
||+|||+|..+..+++. +.+|+++|+++.+++.++++... .++.+..+|....+.++++||+|++...+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHhCccccccccccccccceee
Confidence 89999999999999999 88999999999999999998644 4566999999987777799999999999876
Q ss_pred H------HHHHHHhccCCcEEEE
Q psy7837 215 I------PWHIVDQLKLGGRMLF 231 (299)
Q Consensus 215 ~------~~~~~~~L~~gG~lv~ 231 (299)
+ .+++.++|||||++++
T Consensus 73 ~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 73 LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCcCeEEeC
Confidence 5 3589999999999986
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=1e-13 Score=118.10 Aligned_cols=114 Identities=19% Similarity=0.336 Sum_probs=91.8
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
..+++.+. ++++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------------------- 92 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD-------------------- 92 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh--------------------
Confidence 34455554 67899999999999999999999888778999999999999888887765
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 214 (299)
....+++++.+|........++||+|+++.++++
T Consensus 93 ----------------------------------------------~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 93 ----------------------------------------------AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN 126 (231)
T ss_pred ----------------------------------------------cCCCceEEEEechhcCCCCCCCccEEEEeccccc
Confidence 3446899999998765445578999999877654
Q ss_pred ------HHHHHHHhccCCcEEEEEecCC
Q psy7837 215 ------IPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 215 ------~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+.+++.++|+|||.+++.....
T Consensus 127 ~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 127 VPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 3467899999999999876543
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=1e-13 Score=115.15 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=81.6
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..++.+|||+|||+|..+..+++.|.+|+++|+|+.+++.++++++. ....++++...|+...... ++||+|++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~-----~~~~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAA-----ENLDNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCcceEEecChhhCCcC-CCcCEEEE
Confidence 45678999999999999999999999999999999999999998877 3456788999998764333 57999999
Q ss_pred cchhhh--------HHHHHHHhccCCcEEEEE
Q psy7837 209 SQAIRD--------IPWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 209 ~~~~~~--------~~~~~~~~L~~gG~lv~~ 232 (299)
..++++ +.+++.++|+|||.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 887643 335889999999996554
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=8.4e-14 Score=110.95 Aligned_cols=100 Identities=25% Similarity=0.432 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHH-Hc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--CCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFA-YM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--APYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la-~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD 204 (299)
.++.+|||+|||+|.++..++ .. +.+++++|+++.+++.++++++. ....+++|+++|+.. +... +.||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~-----~~~~ni~~~~~d~~~-l~~~~~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE-----LGLDNIEFIQGDIED-LPQELEEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH-----TTSTTEEEEESBTTC-GCGCSSTTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc-----ccccccceEEeehhc-cccccCCCee
Confidence 357899999999999999999 44 67899999999999999999887 456699999999998 3321 6899
Q ss_pred EEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837 205 VIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 205 ~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
+|++..++++ +.+++.+.|+++|.+++....
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999987754 346899999999999998765
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.5e-13 Score=118.98 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~ 208 (299)
.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|+++++.. +...+++++++|+.... ...++||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~----g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK----GVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 45679999999999999999999999999999999999999998763 33468899999987532 23468999999
Q ss_pred cchhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837 209 SQAIRDI------PWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
..+++++ .+++.++|||||++++...+..
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 9988765 3589999999999998765543
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=3.3e-13 Score=110.41 Aligned_cols=101 Identities=25% Similarity=0.270 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
++.+|||+|||+|.++..++.. +.+|+++|.++.+++.++++++. ....+++++++|+... ...++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~-----~~~~~i~~i~~d~~~~-~~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE-----LGLNNVEIVNGRAEDF-QHEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH-----hCCCCeEEEecchhhc-cccCCccEEEe
Confidence 4889999999999999998866 46799999999999999999887 3456799999998874 33468999999
Q ss_pred cch--hhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 209 SQA--IRDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+.. +..+.+.+.++|+|||.+++......
T Consensus 116 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 146 (181)
T TIGR00138 116 RALASLNVLLELTLNLLKVGGYFLAYKGKKY 146 (181)
T ss_pred hhhhCHHHHHHHHHHhcCCCCEEEEEcCCCc
Confidence 862 23344678999999999999876544
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.51 E-value=2.7e-13 Score=117.71 Aligned_cols=108 Identities=27% Similarity=0.265 Sum_probs=82.7
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD 199 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 199 (299)
+.+.....+.+|.+|||||||.|.++..+++. |++|+++++|++..+.++++++.. +...++++...|..+..
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~----gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA----GLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS----TSSSTEEEEES-GGG----
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEEeeccccC--
Confidence 34566668899999999999999999999988 999999999999999999999874 45678999999987643
Q ss_pred CCCeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837 200 AAPYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 200 ~~~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~ 235 (299)
.+||.|++..+++++ .+.+.++|+|||++++....
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 379999999888765 36899999999999987543
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=4.8e-13 Score=108.53 Aligned_cols=101 Identities=30% Similarity=0.398 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
++.+|||+|||+|.+++.+++.+.. |+++|+++.+++.+++|++.+ ...+++++..|...... ..+||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-----~~~~v~~~~~d~~~~~~-~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-----GLENVEVVQSDLFEALP-DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-----TCTTEEEEESSTTTTCC-TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----Ccccccccccccccccc-ccceeEEEE
Confidence 5889999999999999999998654 999999999999999999984 44459999999887555 478999999
Q ss_pred cchhh-----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 209 SQAIR-----------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+++++ .+.+...+.|+|||.+++......
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 98753 344678999999999988776554
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=3.9e-13 Score=110.86 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=82.4
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++. ....+++++.+|..... ..+||+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~-----~~~~~i~~~~~d~~~~~--~~~~D~ 100 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR-----FGCGNIDIIPGEAPIEL--PGKADA 100 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----hCCCCeEEEecCchhhc--CcCCCE
Confidence 4567889999999999999999886 36899999999999999999887 34457899999875432 257999
Q ss_pred EEecchh---hhHHHHHHHhccCCcEEEEEecC
Q psy7837 206 IYISQAI---RDIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 206 v~~~~~~---~~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
|+++... ..+.+.+.++|+|||++++....
T Consensus 101 v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 9997753 44667889999999999987543
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=2.7e-13 Score=116.21 Aligned_cols=140 Identities=28% Similarity=0.316 Sum_probs=104.9
Q ss_pred ccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837 22 AFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 101 (299)
Q Consensus 22 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~ 101 (299)
.|+++++.|.+..|.+....+...|. .....+++.|. ++||++|||||||.|.++.++++..+ .+|+|+++|
T Consensus 33 l~Ld~~~~Yscayf~~~~~tL~eAQ~----~k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS 104 (283)
T COG2230 33 LFLDPSMTYSCAYFEDPDMTLEEAQR----AKLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLS 104 (283)
T ss_pred HhcCCCCceeeEEeCCCCCChHHHHH----HHHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCC
Confidence 35677778888888877666655542 22344445554 89999999999999999999998763 467777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc
Q psy7837 102 PELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181 (299)
Q Consensus 102 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~ 181 (299)
+...+.+++.+... +
T Consensus 105 ~~Q~~~~~~r~~~~-----------------------------------------------------------------g 119 (283)
T COG2230 105 EEQLAYAEKRIAAR-----------------------------------------------------------------G 119 (283)
T ss_pred HHHHHHHHHHHHHc-----------------------------------------------------------------C
Confidence 77777777766652 4
Q ss_pred CCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 182 ~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
...+++++..|..+.. +.||.|++...++++. +.+.++|+|||.+++-.....
T Consensus 120 l~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 120 LEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred CCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 4569999999987754 3399999999987654 578999999999998765543
No 31
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=1.2e-12 Score=100.13 Aligned_cols=113 Identities=28% Similarity=0.376 Sum_probs=86.5
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 132 (299)
+...+++.+. +.++++|||+|||+|.++..+++..+. ++++++|.++.+++.+++++..
T Consensus 7 ~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~------------------ 65 (124)
T TIGR02469 7 VRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARR------------------ 65 (124)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHH------------------
Confidence 3344555554 677889999999999999999987654 7889999998888888877766
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecch
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQA 211 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 211 (299)
....+++++.+|+.... ....+||.|++...
T Consensus 66 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 66 ------------------------------------------------FGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred ------------------------------------------------hCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 23457888888866422 22357999999875
Q ss_pred hh---hHHHHHHHhccCCcEEEEEec
Q psy7837 212 IR---DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 212 ~~---~~~~~~~~~L~~gG~lv~~~~ 234 (299)
.. .+.+.+.+.|+|||.+++..-
T Consensus 98 ~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred chhHHHHHHHHHHHcCCCCEEEEEec
Confidence 43 467899999999999998753
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=3.3e-13 Score=111.98 Aligned_cols=98 Identities=21% Similarity=0.215 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..++.+|||+|||+|.++..++++|.+|+++|+|+.+++.++++++.+ .. ++.+...|......+ ++||+|++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~-----~~-~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARE-----NL-PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHh-----CC-CceeEeccchhcccc-CCCCEEEE
Confidence 345689999999999999999999999999999999999999887662 22 377777777543333 57999999
Q ss_pred cchhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837 209 SQAIRD--------IPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 209 ~~~~~~--------~~~~~~~~L~~gG~lv~~~ 233 (299)
..++++ +.+++.++|+|||.+++..
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 877643 3458899999999966553
No 33
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=3e-13 Score=112.53 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=92.1
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV 130 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 130 (299)
..+....+..+. +.++++|||+|||+|.++..+++.+++.++++++|+++.+++.+++++...
T Consensus 26 ~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--------------- 88 (198)
T PRK00377 26 EEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--------------- 88 (198)
T ss_pred HHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh---------------
Confidence 334444455554 889999999999999999999988877789999999999999888887761
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEec
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYIS 209 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~ 209 (299)
+...++.++.+|....... .+.||.|+++
T Consensus 89 --------------------------------------------------g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 89 --------------------------------------------------GVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred --------------------------------------------------CCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 2246788888888653322 2579999995
Q ss_pred ch---hhhHHHHHHHhccCCcEEEEEecCC
Q psy7837 210 QA---IRDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 210 ~~---~~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.. +..+.+.+.++|+|||++++.....
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 119 GGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred CCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 54 4556788999999999999866544
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=2.3e-13 Score=117.76 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=80.0
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++ +++++++|+.... ..++||+
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCC-CCCCceE
Confidence 4467899999999999999999887 67899999999999998653 5778999987643 3478999
Q ss_pred EEecchhhhHH------HHHHHhccCCcEEEEEecC
Q psy7837 206 IYISQAIRDIP------WHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 206 v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~ 235 (299)
|+++.++++++ +++.++|||||.+++..+.
T Consensus 93 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 93 VVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred EEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99999987654 4789999999999998654
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=2.8e-14 Score=115.53 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=108.2
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.+.+..+|.|+|||+|..+..++++ ++.++|+|.|+.|++.|+++ ..+++|..+|+....+ ..+.|+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r----------lp~~~f~~aDl~~w~p-~~~~dl 95 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR----------LPDATFEEADLRTWKP-EQPTDL 95 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh----------CCCCceecccHhhcCC-CCccch
Confidence 4466789999999999999999987 78999999999999999765 4678999999987544 367999
Q ss_pred EEecchhhhHHH------HHHHhccCCcEEEEEecCCCCcceeee---------EEee-cCCceEEEEecc-eecccccc
Q psy7837 206 IYISQAIRDIPW------HIVDQLKLGGRMLFIKGHEDDIMTLEL---------LDKF-VNGSVKTTVIHP-HVYIHELK 268 (299)
Q Consensus 206 v~~~~~~~~~~~------~~~~~L~~gG~lv~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~-~~~~~~~~ 268 (299)
+++|++++++++ ++...|+|||.|.+..+.......-.. +... .+..+....+.. ..|..-+.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 999999988774 788999999999999876543311000 1111 111122222222 22332344
Q ss_pred ccccccccce-----ecCCCCCCcccccc
Q psy7837 269 SLEDQKRMFH-----YYNTPPPQMDLFDG 292 (299)
Q Consensus 269 ~~~~~~~~~~-----~~~~~~~~~~~~~~ 292 (299)
........|| .+..-+++++|+++
T Consensus 176 ~~~~rvDiW~T~Y~h~l~~a~aIvdWvkg 204 (257)
T COG4106 176 PLACRVDIWHTTYYHQLPGADAIVDWVKG 204 (257)
T ss_pred cccceeeeeeeeccccCCCccchhhheec
Confidence 4556667785 33345678888875
No 36
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=4.1e-13 Score=117.14 Aligned_cols=98 Identities=26% Similarity=0.330 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
..++++|||+|||||.+++..+++|+. |+++|+++.+++.+++|++.| +...++.+. .... .. ..+||+|+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N----~~~~~~~v~--~~~~-~~-~~~~dlvv 230 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN----GVEDRIEVS--LSED-LV-EGKFDLVV 230 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT----T-TTCEEES--CTSC-TC-CS-EEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc----CCCeeEEEE--Eecc-cc-cccCCEEE
Confidence 456899999999999999999999985 999999999999999999986 344455442 1111 22 27899999
Q ss_pred ecchh---hhHHHHHHHhccCCcEEEEEec
Q psy7837 208 ISQAI---RDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 208 ~~~~~---~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
+|-.. ..+.+.+.++|+|||.++++--
T Consensus 231 ANI~~~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 231 ANILADVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EES-HHHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ECCCHHHHHHHHHHHHHhhCCCCEEEEccc
Confidence 88754 4455788999999999999854
No 37
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.1e-12 Score=113.40 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=94.4
Q ss_pred CCCceeeeeccCCCcCcCccccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHH
Q psy7837 4 EKYPVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTT 83 (299)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~ 83 (299)
++|..+..+..+.-+.+++.-..+.......-.|.-+..+.|. .|. ....++.|...+++|.+|||+|||||.+++
T Consensus 103 k~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~---HpT-T~lcL~~Le~~~~~g~~vlDvGcGSGILaI 178 (300)
T COG2264 103 KKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGT---HPT-TSLCLEALEKLLKKGKTVLDVGCGSGILAI 178 (300)
T ss_pred HhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCC---Chh-HHHHHHHHHHhhcCCCEEEEecCChhHHHH
Confidence 3556666666666666644322111122223333333444333 232 367788888888999999999999999887
Q ss_pred HHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCCh
Q psy7837 84 LFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK 163 (299)
Q Consensus 84 ~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~ 163 (299)
..++... ..++|+|+++..++.++++..
T Consensus 179 Aa~kLGA--~~v~g~DiDp~AV~aa~eNa~-------------------------------------------------- 206 (300)
T COG2264 179 AAAKLGA--KKVVGVDIDPQAVEAARENAR-------------------------------------------------- 206 (300)
T ss_pred HHHHcCC--ceEEEecCCHHHHHHHHHHHH--------------------------------------------------
Confidence 7665432 245555555555555555544
Q ss_pred HHHHHHHHHHHhcCCcccCCCC-eEEEEcCCCCCCCCCCCeeEEEecch---hhhHHHHHHHhccCCcEEEEEec
Q psy7837 164 NLCKRAMKNIRRGAPAIALAEN-FEFVCADGRRGYPDAAPYDVIYISQA---IRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
.| .... +.....+... ....++||+|++|-. +..+.+.+.+.|||||+++++--
T Consensus 207 -----------~N-----~v~~~~~~~~~~~~~-~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 207 -----------LN-----GVELLVQAKGFLLLE-VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred -----------Hc-----CCchhhhcccccchh-hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEee
Confidence 42 2222 2222222222 223368999999863 34556799999999999999853
No 38
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.47 E-value=1.9e-13 Score=103.74 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCcHHHHHHHHcC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEe
Q psy7837 132 GSKVLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYI 208 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~ 208 (299)
|.+|||+|||+|.++..+++.+ .+++++|+++..++.++.+++.+ ....+++++++|..... ...++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----GLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC----TTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc----cCCceEEEEECchhhchhhccCceeEEEEE
Confidence 5689999999999999999998 88999999999999999999884 34578999999987532 34588999999
Q ss_pred cchhh--------------hHHHHHHHhccCCcEEEEEec
Q psy7837 209 SQAIR--------------DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 209 ~~~~~--------------~~~~~~~~~L~~gG~lv~~~~ 234 (299)
+.++. .+.+++.++|+|||.+++..+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99864 234688999999999999875
No 39
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=1.5e-12 Score=112.41 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
.++.+|||+|||+|.++..++..+.+++++|+|+.+++.++++.. ...++++|+.......++||+|+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~~~fD~V~s~ 110 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLATATFDLAWSN 110 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCCCcEEEEEEC
Confidence 456899999999999999999999999999999999999987632 2467889988755555789999999
Q ss_pred chhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837 210 QAIRDI------PWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 210 ~~~~~~------~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.++++. ..++.++|+|||.++++.....
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 887653 4689999999999999876543
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=1.4e-12 Score=113.98 Aligned_cols=105 Identities=30% Similarity=0.375 Sum_probs=87.5
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG 143 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G 143 (299)
.+++|++|||+|||+|..+..+++..++.++++++|+++.+++.++++...
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~----------------------------- 124 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK----------------------------- 124 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-----------------------------
Confidence 478999999999999999998888888878899999999999988887765
Q ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh------hHHH
Q psy7837 144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR------DIPW 217 (299)
Q Consensus 144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~------~~~~ 217 (299)
....+++++.+|+.......++||+|+++.+++ .+.+
T Consensus 125 -------------------------------------~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~ 167 (272)
T PRK11873 125 -------------------------------------AGYTNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFK 167 (272)
T ss_pred -------------------------------------cCCCCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHH
Confidence 344688999999876544457899999988654 3557
Q ss_pred HHHHhccCCcEEEEEec
Q psy7837 218 HIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 218 ~~~~~L~~gG~lv~~~~ 234 (299)
++.++|||||++++...
T Consensus 168 ~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 168 EAFRVLKPGGRFAISDV 184 (272)
T ss_pred HHHHHcCCCcEEEEEEe
Confidence 99999999999999643
No 41
>KOG1270|consensus
Probab=99.45 E-value=2.2e-13 Score=113.77 Aligned_cols=103 Identities=24% Similarity=0.407 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCccc--CCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA--LAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.|++|||+|||.|.++..+++.|++|+|+|+++.+++.|++..... ..+. ...++++...|+...- +.||.|+|
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhhcc---cccceeee
Confidence 3588999999999999999999999999999999999999984331 1000 1123566666655432 45999999
Q ss_pred cchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837 209 SQAIRDIP------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
..+++|+. +.+.++|||+|++++.+-+..
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99999873 478899999999999876643
No 42
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=2.9e-12 Score=108.26 Aligned_cols=116 Identities=26% Similarity=0.267 Sum_probs=87.8
Q ss_pred CcchHHHHHHHH-hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q psy7837 50 SPSDHCLVLELL-SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGH 128 (299)
Q Consensus 50 ~p~~~~~~~~~l-~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 128 (299)
.+.+...++..+ .-.+++|++|||+|||+|.++..+++.++ .|+|+++|+++.+++...+....
T Consensus 54 r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------------- 118 (226)
T PRK04266 54 RSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------------- 118 (226)
T ss_pred ccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh--------------
Confidence 345556666644 22478999999999999999999999987 78999999999998877655443
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDV 205 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 205 (299)
..|+.++.+|+.... .-..+||+
T Consensus 119 ------------------------------------------------------~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 119 ------------------------------------------------------RKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred ------------------------------------------------------cCCcEEEECCCCCcchhhhccccCCE
Confidence 147888888876421 11246999
Q ss_pred EEecchhhh----HHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIRD----IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~~----~~~~~~~~L~~gG~lv~~~~ 234 (299)
|+++....+ +.+++.+.|||||.+++.+.
T Consensus 145 i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 145 IYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred EEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 998765432 35789999999999999644
No 43
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.44 E-value=2e-12 Score=112.19 Aligned_cols=101 Identities=27% Similarity=0.253 Sum_probs=83.1
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
.+.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++... ..++.++.+|+.....+.++||+|
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcccCCCCCCCeEEE
Confidence 5678899999999999999888764 77999999999999999987533 357999999988655555789999
Q ss_pred Eecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837 207 YISQAIRD--------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
++..++.+ +.+++.++|||||.+++....
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99765543 335889999999999998654
No 44
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.43 E-value=1.4e-12 Score=116.06 Aligned_cols=129 Identities=13% Similarity=0.035 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEec
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYIS 209 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~ 209 (299)
++.+|||+|||+|.+++.+++.+.+|+++|.++.+++.++++++.+ ...+++++++|+..... ..+.||+|+++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~-----~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAEL-----GLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHc-----CCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 5689999999999999999999999999999999999999999883 45789999999875332 22469999999
Q ss_pred chhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837 210 QAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 210 ~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
++-..+.+ ++...++|++.+++++.+......+..+ .+++...+.++.++ |.+.-
T Consensus 248 PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmF-P~T~H 305 (315)
T PRK03522 248 PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMF-PHTAH 305 (315)
T ss_pred CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccC-CCCCe
Confidence 88554333 3344467889999999887766555554 35888889899888 77654
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=1.5e-12 Score=114.47 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
.++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++++.+ .. ++++...|+..... .++||+|++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~-----~l-~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKE-----NL-NIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-----CC-ceEEEEechhcccc-cCCccEEEEc
Confidence 34569999999999999999999999999999999999999988762 33 78888888875433 4689999998
Q ss_pred chhhh--------HHHHHHHhccCCcEEEEEe
Q psy7837 210 QAIRD--------IPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 210 ~~~~~--------~~~~~~~~L~~gG~lv~~~ 233 (299)
.++++ +.+++.++|+|||++++..
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87643 3468899999999977654
No 46
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=1.2e-12 Score=121.81 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=107.7
Q ss_pred HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-- 197 (299)
Q Consensus 120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 197 (299)
.+.+.......++.+|||+|||+|.+++.+++.+..|+++|+|+.+++.|++|++. ....+++++.+|+....
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~-----~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR-----NGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH-----cCCCceEEEEeChHHhhhh
Confidence 33333334456788999999999999999999998999999999999999999987 35568999999987532
Q ss_pred --CCCCCeeEEEecchhhhH---HHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837 198 --PDAAPYDVIYISQAIRDI---PWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 198 --~~~~~fD~v~~~~~~~~~---~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
...++||+|+++++.... .+.+. .+++++++++++.+......+..+ .+.+++...+.++.++ |.+.-
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~~~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L---~~~gY~l~~i~~~DmF-P~T~H 433 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGAAEVMQALA-KLGPKRIVYVSCNPATLARDAGVL---VEAGYRLKRAGMLDMF-PHTGH 433 (443)
T ss_pred hhhhcCCCCEEEECcCCcChHHHHHHHH-hcCCCeEEEEEeChHHhhccHHHH---hhCCcEEEEEEEeccC-CCCCc
Confidence 123579999999886533 33333 368999999999876544444444 3456999999999999 77654
No 47
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.43 E-value=3e-12 Score=114.75 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=92.3
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA 200 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 200 (299)
..+..++...++.+|||+|||+|.++..++..+..++++|+++.+++.++.|++. .+..++.+..+|+.......
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~-----~g~~~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEH-----YGIEDFFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHH-----hCCCCCeEEecchhcCCccc
Confidence 3344455678899999999999999999988899999999999999999999987 34455889999998755445
Q ss_pred CCeeEEEecchh---------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 201 APYDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 201 ~~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
++||.|++++++ ..+.+++.++|+|||++++..++..
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 789999998653 2344678999999999999987653
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.42 E-value=3.5e-12 Score=104.16 Aligned_cols=102 Identities=21% Similarity=0.152 Sum_probs=78.5
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.....++.++||+|||.|+.++.++++|..|+++|.|+..++.+++.++. . ...++....|......+ ..||+
T Consensus 25 a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~-----~-~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 25 AVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE-----E-GLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH-----T-T-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh-----c-CceeEEEEecchhcccc-CCcCE
Confidence 34556788999999999999999999999999999999999999887766 2 23488999998764443 67999
Q ss_pred EEecchhh--------hHHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIR--------DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~ 234 (299)
|++..++. .+.+.+...++|||++++.+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 99866553 344678889999999888543
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=2.4e-12 Score=105.36 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=82.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++++.+ . .+++++.+|...... ++||+|+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~~~~~~~~d~~~~~~--~~fD~Vi~n 89 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLN-----N-VGLDVVMTDLFKGVR--GKFDVILFN 89 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----C-CceEEEEcccccccC--CcccEEEEC
Confidence 45678999999999999999999889999999999999999998773 2 368889999866432 479999998
Q ss_pred chhh---------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 210 QAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 210 ~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.++. .+.+++.++|+|||.+++......
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 7642 235678899999999999876554
No 50
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=2.9e-12 Score=110.30 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh-CCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~-~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (299)
..+...+...+.++.+|||+|||+|..+..+++.+ .+..+++++|+++.|++.+++++...
T Consensus 44 ~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------ 105 (247)
T PRK15451 44 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------ 105 (247)
T ss_pred HHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------
Confidence 33333334446788999999999999998888764 34567888888888888888777651
Q ss_pred eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR 213 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~ 213 (299)
....+++++++|+..... ..+|+|+++.+++
T Consensus 106 -----------------------------------------------~~~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~ 136 (247)
T PRK15451 106 -----------------------------------------------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQ 136 (247)
T ss_pred -----------------------------------------------CCCCCeEEEeCChhhCCC--CCCCEEehhhHHH
Confidence 234589999999876443 3489999988765
Q ss_pred h--------HHHHHHHhccCCcEEEEEe
Q psy7837 214 D--------IPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 214 ~--------~~~~~~~~L~~gG~lv~~~ 233 (299)
+ +.+++.+.|+|||.+++..
T Consensus 137 ~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 137 FLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4 3468999999999999975
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.41 E-value=1.5e-12 Score=108.55 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC-CCCC--CCCCCeeE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG-RRGY--PDAAPYDV 205 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~ 205 (299)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++++. ....++.++++|+ .... ...++||.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~-----~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE-----EGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH-----cCCCCEEEEecCHHHHHHHHcCccccce
Confidence 5789999999999999999876 46799999999999999999887 3447899999998 4322 33467999
Q ss_pred EEecchh--------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAI--------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|+++.+. ..+.+++.++|+|||.+++......
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~ 160 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG 160 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH
Confidence 9987542 2356789999999999999876654
No 52
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=2.6e-12 Score=111.35 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=80.8
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++ .++.++.+|+.... ...+||+
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~~~-~~~~fD~ 96 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------PDCQFVEADIASWQ-PPQALDL 96 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhccC-CCCCccE
Confidence 4567889999999999999999876 578999999999999998763 36788999987543 3368999
Q ss_pred EEecchhhhH------HHHHHHhccCCcEEEEEecC
Q psy7837 206 IYISQAIRDI------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 206 v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 235 (299)
|+++.+++++ .+++.++|+|||.+++..+.
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 9999998654 35899999999999997643
No 53
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=2.9e-12 Score=109.15 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=93.7
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV 130 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 130 (299)
+.....++..+.. ..++.+|||+|||+|+.+.+++..++.+|+++++|+++...+.|++++...
T Consensus 53 ~~~~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--------------- 116 (234)
T PLN02781 53 PVDEGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--------------- 116 (234)
T ss_pred CHHHHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3344666666654 667889999999999999999999888899999999999999999998872
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCee
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYD 204 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD 204 (299)
+...+++++.+|+..... ..++||
T Consensus 117 --------------------------------------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 117 --------------------------------------------------GVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred --------------------------------------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 344689999999875321 136799
Q ss_pred EEEecch---hhhHHHHHHHhccCCcEEEEEe
Q psy7837 205 VIYISQA---IRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 205 ~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
+|+++.. .....+.+.++|+|||.+++..
T Consensus 147 ~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9999964 4456678899999999988754
No 54
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.40 E-value=1.3e-12 Score=110.14 Aligned_cols=106 Identities=26% Similarity=0.362 Sum_probs=88.9
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCee
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYD 204 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD 204 (299)
.....+|||+|||+|..++.++++ . ++++++|+++.+.+.|+++++.+ ....++++++.|+.+... ...+||
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln----~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN----PLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC----cchhceeEehhhHHHhhhcccccccC
Confidence 344889999999999999999988 4 78999999999999999999986 678999999999986432 235799
Q ss_pred EEEecchhh------------------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837 205 VIYISQAIR------------------------DIPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 205 ~v~~~~~~~------------------------~~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
+|+||+++. .+.+...++||+||.+.+..++..-
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl 175 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERL 175 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHH
Confidence 999999852 2334678899999999999887653
No 55
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.40 E-value=8.8e-12 Score=108.87 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc-----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM-----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
++.+|||+|||+|.++..+++. +..++++|+|+.+++.|+++. .++.+.++|....+...++||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecccCCCcCCceeE
Confidence 4578999999999999988765 247999999999999987652 4688999998876556678999
Q ss_pred EEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAIRDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|++... ....+++.++|||||++++..+...
T Consensus 155 I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 155 IIRIYA-PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred EEEecC-CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 998665 3456899999999999999987654
No 56
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.40 E-value=1.2e-11 Score=108.86 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=80.4
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
..+++.+....++|.+|||+|||+|.++..+++. + .++++++|+++.+++.+++++...
T Consensus 147 ~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n------------------- 205 (288)
T TIGR00406 147 SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELN------------------- 205 (288)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 4455666555678999999999999999877753 3 247888888888888777776551
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh-
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR- 213 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~- 213 (299)
....++.+...+.... ..++||+|+++....
T Consensus 206 ----------------------------------------------~~~~~~~~~~~~~~~~--~~~~fDlVvan~~~~~ 237 (288)
T TIGR00406 206 ----------------------------------------------QVSDRLQVKLIYLEQP--IEGKADVIVANILAEV 237 (288)
T ss_pred ----------------------------------------------CCCcceEEEecccccc--cCCCceEEEEecCHHH
Confidence 2233456666553222 236799999987654
Q ss_pred --hHHHHHHHhccCCcEEEEEecC
Q psy7837 214 --DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 214 --~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.+.+++.++|+|||.++++...
T Consensus 238 l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 238 IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4456889999999999997654
No 57
>PRK14967 putative methyltransferase; Provisional
Probab=99.39 E-value=9e-12 Score=105.61 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=81.8
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++++.+ . .++.++.+|+.... ..++||+|+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-----~-~~~~~~~~d~~~~~-~~~~fD~Vi 106 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-----G-VDVDVRRGDWARAV-EFRPFDVVV 106 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-----C-CeeEEEECchhhhc-cCCCeeEEE
Confidence 45678999999999999999998876 8999999999999999998772 2 26888899987643 346899999
Q ss_pred ecchh---------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAI---------------------------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
++.+. ..+.+++.++|++||++++.....
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 98642 224457889999999999876654
No 58
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=4.8e-12 Score=112.73 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.++++|||+|||+|+++..++..+. .|+|+|.|+.++..++...... ....++.++.+|+..... .++||+|++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~----~~~~~i~~~~~d~e~lp~-~~~FD~V~s 195 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL----GNDQRAHLLPLGIEQLPA-LKAFDTVFS 195 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc----CCCCCeEEEeCCHHHCCC-cCCcCEEEE
Confidence 4678999999999999999999876 5999999999987655433221 123579999999886544 578999999
Q ss_pred cchhhhH------HHHHHHhccCCcEEEEEe
Q psy7837 209 SQAIRDI------PWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 209 ~~~~~~~------~~~~~~~L~~gG~lv~~~ 233 (299)
..++++. .+++.+.|+|||.+++..
T Consensus 196 ~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 196 MGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 8887553 468999999999999874
No 59
>KOG2915|consensus
Probab=99.38 E-value=7.9e-12 Score=104.73 Aligned_cols=129 Identities=23% Similarity=0.305 Sum_probs=107.4
Q ss_pred ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837 39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118 (299)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~ 118 (299)
.+.++++.++.++...+.++..|. ++||.+|+|.|+|+|.++.++++.+++.||++++|+.....+.|++.++..
T Consensus 79 Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--- 153 (314)
T KOG2915|consen 79 TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--- 153 (314)
T ss_pred hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh---
Confidence 456778889999999999999998 999999999999999999999999999999999999999999999988873
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC-CC
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GY 197 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~ 197 (299)
+..+++++.+-|+.. .+
T Consensus 154 --------------------------------------------------------------gi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 154 --------------------------------------------------------------GIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred --------------------------------------------------------------CCCcceEEEEeecccCCc
Confidence 567899999999884 23
Q ss_pred C-CCCCeeEEEecchhhhHH-HHHHHhccCCcEEEEEec
Q psy7837 198 P-DAAPYDVIYISQAIRDIP-WHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 198 ~-~~~~fD~v~~~~~~~~~~-~~~~~~L~~gG~lv~~~~ 234 (299)
. .+..+|.|+.+.+..|.. ..+...||.+|.-++++.
T Consensus 172 ~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred cccccccceEEEcCCChhhhhhhhHHHhhhcCceEEecc
Confidence 2 257899999998876633 566668888774444443
No 60
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.36 E-value=1.8e-12 Score=103.78 Aligned_cols=100 Identities=24% Similarity=0.368 Sum_probs=77.9
Q ss_pred Hhhhcc-cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837 123 INFYGH-LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201 (299)
Q Consensus 123 ~~~~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 201 (299)
+..+.. ..++.+|||+|||+|.++..+++.+.+++++|+++.+++. . +......+........+
T Consensus 13 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 13 LERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECHTHHCHSS
T ss_pred HHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhhhhhcccc
Confidence 333333 5778999999999999999999999999999999999887 1 22333333223233447
Q ss_pred CeeEEEecchhhhHH------HHHHHhccCCcEEEEEecCCC
Q psy7837 202 PYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 202 ~fD~v~~~~~~~~~~------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+||+|++..++++++ +++.++|||||.+++..+...
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999997764 589999999999999998753
No 61
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=6.7e-12 Score=107.57 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.++.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++... ....+++++++|+..... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----~~~~~v~~~~~d~~~~~~--~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----HSEIPVEILCNDIRHVEI--KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc----CCCCCeEEEECChhhCCC--CCCCE
Confidence 46789999999999999988874 678999999999999999998762 234578999999986543 34899
Q ss_pred EEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIRDI--------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~ 234 (299)
|++..+++++ .+++.++|+|||.+++...
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9988876553 3589999999999999864
No 62
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=7.7e-12 Score=110.44 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=78.2
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
...++++|||+|||+|+++..++..|. .|+|+|.|+.++..++..-+.. ....++.+..+++.+.... .+||+|
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~----~~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL----DNDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh----ccCCCeEEEECCHHHCCCC-CCcCEE
Confidence 346689999999999999999988886 5999999999987654322210 1235778888887664333 579999
Q ss_pred EecchhhhH------HHHHHHhccCCcEEEEEe
Q psy7837 207 YISQAIRDI------PWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 207 ~~~~~~~~~------~~~~~~~L~~gG~lv~~~ 233 (299)
++..++.++ .++++++|+|||.|++..
T Consensus 193 ~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 193 FSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 999988654 468999999999999874
No 63
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.36 E-value=2.9e-12 Score=116.56 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~ 208 (299)
.++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|++.+ ...+++++.+|+..... ...+||+|++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~-----~~~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQML-----GLDNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHc-----CCCcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 45679999999999999999999989999999999999999999883 45689999999865332 1245999999
Q ss_pred cchhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837 209 SQAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 209 ~~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
+++...+.+ +....++|++.+++++.+......+..+ .+++.+.+.++.++ |.+.-
T Consensus 307 DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmF-PqT~H 365 (374)
T TIGR02085 307 NPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMF-PHTSH 365 (374)
T ss_pred CCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccC-CCCCc
Confidence 998754333 2234578999999999887655555555 35888899999999 76654
No 64
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.36 E-value=2.2e-11 Score=106.78 Aligned_cols=101 Identities=26% Similarity=0.348 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++|++.+ +...++.++.+|+..... ..+||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~----~~~~~i~~~~~D~~~~~~-~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH----GLEDRVTLIQSDLFAALP-GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECchhhccC-CCCccEEEE
Confidence 4579999999999999999986 568999999999999999999874 233579999999875443 357999999
Q ss_pred cchh-------------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 209 SQAI-------------------------------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 209 ~~~~-------------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+++. ..+...+.+.|+|||++++..+..
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~ 254 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 8653 122346778999999999988753
No 65
>PTZ00146 fibrillarin; Provisional
Probab=99.36 E-value=1.4e-11 Score=106.64 Aligned_cols=116 Identities=23% Similarity=0.247 Sum_probs=85.9
Q ss_pred chHHHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837 52 SDHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV 130 (299)
Q Consensus 52 ~~~~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 130 (299)
.+.+.++.-+.. .+++|++|||+|||+|+++..+++.++++|.|+++|+++.+.+...+....
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---------------- 179 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---------------- 179 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----------------
Confidence 344455444443 379999999999999999999999999999999999998766544443322
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVIY 207 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~ 207 (299)
..|+.++.+|+.... ....++|+|+
T Consensus 180 ----------------------------------------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 180 ----------------------------------------------------RPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred ----------------------------------------------------cCCCEEEECCccChhhhhcccCCCCEEE
Confidence 247888899976421 1124799999
Q ss_pred ecchhhh----HHHHHHHhccCCcEEEEEecC
Q psy7837 208 ISQAIRD----IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 208 ~~~~~~~----~~~~~~~~L~~gG~lv~~~~~ 235 (299)
++....+ +..++.+.|||||.+++.+..
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika 239 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKA 239 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEEEec
Confidence 9886433 335788899999999996543
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.36 E-value=5.1e-12 Score=104.76 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDV 205 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~ 205 (299)
...++||||||+|.++..+++. ...++++|+++.+++.+++++.. ....|+.++++|+... ....+++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~-----~~l~ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK-----LGLKNLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----hCCCCEEEEccCHHHHHHhhCCCCceeE
Confidence 4679999999999999999887 46799999999999999999877 4556999999998742 233458999
Q ss_pred EEecchhh--------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|+++.+.. .+.+++.++|||||.+++.+....
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~ 136 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP 136 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 99986532 356789999999999999886654
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=1.9e-12 Score=95.69 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=68.6
Q ss_pred EEEEcCCCcHHHHHHHHcC-----CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 135 VLDIGSGSGYLSALFAYMG-----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~-----~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
|||+|||+|..+..+.+.. .+++++|+|+++++.++++... ... +++++++|+.......++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~-~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-----DGP-KVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-----TTT-TSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-----cCC-ceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999998773 7899999999999999999876 223 8999999998754455789999994
Q ss_pred ch-hhh--------HHHHHHHhccCCc
Q psy7837 210 QA-IRD--------IPWHIVDQLKLGG 227 (299)
Q Consensus 210 ~~-~~~--------~~~~~~~~L~~gG 227 (299)
.. +++ +.+++.++|+|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 43 543 3468899999998
No 68
>PRK08317 hypothetical protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=104.26 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=88.7
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR 195 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 195 (299)
+.+.+.....+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++... ...++.+..+|...
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceEEEeccccc
Confidence 3344445566788899999999999999999876 36899999999999999987332 45689999999876
Q ss_pred CCCCCCCeeEEEecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837 196 GYPDAAPYDVIYISQAIRD------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 196 ~~~~~~~fD~v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.....++||+|++..++++ +.+++.++|+|||.+++....
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4444578999999887754 457899999999999987653
No 69
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=1.2e-11 Score=103.62 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC-------cccCCCCeEEEEcCCCCCCCC-CC
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP-------AIALAENFEFVCADGRRGYPD-AA 201 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~-~~ 201 (299)
.++.+|||+|||.|..+..++++|.+|+++|+|+.+++.+.+....... +.....+++++++|+...... .+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3578999999999999999999999999999999999986443211000 000134789999999864432 35
Q ss_pred CeeEEEecchhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837 202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~ 234 (299)
.||.|+-...+.++ .+.+.++|+|||.+++.+.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 69999877766444 3578999999998666543
No 70
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.35 E-value=1.6e-11 Score=106.58 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=87.4
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG 143 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G 143 (299)
.+++|++|||+|||+|..+..+++.++..|+++++|+++.+++.+++++..
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~----------------------------- 118 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR----------------------------- 118 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH-----------------------------
Confidence 378999999999999999999999988778999999999999998888877
Q ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh----------
Q psy7837 144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR---------- 213 (299)
Q Consensus 144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~---------- 213 (299)
.+..++.++..|+.......+.||.|+++++..
T Consensus 119 -------------------------------------~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~ 161 (264)
T TIGR00446 119 -------------------------------------CGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPS 161 (264)
T ss_pred -------------------------------------cCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChh
Confidence 344578888888765333335699999987532
Q ss_pred ------------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837 214 ------------------DIPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 214 ------------------~~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
.+.+.+.++|||||+|+.++-+...
T Consensus 162 ~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 162 RKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 2445778899999999998765443
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=1.8e-11 Score=110.53 Aligned_cols=101 Identities=16% Similarity=0.325 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
+.+|||+|||+|.++..+++. +.+|+++|.|+.+++.+++|++.+.. ....+++++..|...... ..+||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~--~~~~~v~~~~~D~l~~~~-~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP--EALDRCEFMINNALSGVE-PFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc--ccCceEEEEEccccccCC-CCCEEEEEEC
Confidence 469999999999999999887 46899999999999999999987421 012478999998875443 3579999999
Q ss_pred chhh-----------hHHHHHHHhccCCcEEEEEecC
Q psy7837 210 QAIR-----------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 210 ~~~~-----------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
++++ .+...+.+.|+|||.+++....
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 8864 2345788999999999999643
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=99.34 E-value=1.4e-11 Score=101.36 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCC--eEEEEcCCCCCCCCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN--FEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
.++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++..+ ...+ +.++.+|....... .+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~d~~~~~~~-~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----NIRNNGVEVIRSDLFEPFRG-DKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----CCCCcceEEEeccccccccc-cCceEEE
Confidence 46789999999999999999999999999999999999999998763 3233 88999998765443 4799999
Q ss_pred ecchhh---------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
++.++. .+.+++.++|+|||.+++..+..
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 876532 24568889999999998887654
No 73
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=3.2e-11 Score=101.96 Aligned_cols=96 Identities=25% Similarity=0.293 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..++.+|||+|||+|.++..++..+.+++++|+++.++..+++++... ....++.+.++|+.... ++||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----DVAGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----CCCCceEEEECChhhCC---CCcCEEEE
Confidence 567899999999999999999999999999999999999999998762 22358999999987643 67999998
Q ss_pred cchhhhH--------HHHHHHhccCCcEEEE
Q psy7837 209 SQAIRDI--------PWHIVDQLKLGGRMLF 231 (299)
Q Consensus 209 ~~~~~~~--------~~~~~~~L~~gG~lv~ 231 (299)
..++.++ ..++.+++++++.+.+
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 8776443 2456667775544443
No 74
>PLN02476 O-methyltransferase
Probab=99.34 E-value=1.5e-11 Score=106.19 Aligned_cols=117 Identities=16% Similarity=0.290 Sum_probs=94.4
Q ss_pred chHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCC
Q psy7837 52 SDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVY 131 (299)
Q Consensus 52 ~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 131 (299)
.....++..+.. ..++.+|||+||++|+.+.+++..++++|+++++|.++...+.|++++.+.
T Consensus 104 ~~~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 104 PDQAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 344566666654 667899999999999999999999988899999999999999999999873
Q ss_pred CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCeeE
Q psy7837 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYDV 205 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~ 205 (299)
+...+++++.+|+...+. ..++||+
T Consensus 167 -------------------------------------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 167 -------------------------------------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred -------------------------------------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 345689999999865321 1257999
Q ss_pred EEecchhh---hHHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIR---DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~ 234 (299)
||+++.-. ...+.+.++|++||.+++..-
T Consensus 198 VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDADKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999754 344688899999999998643
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.34 E-value=1.9e-11 Score=105.38 Aligned_cols=94 Identities=29% Similarity=0.350 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.++.+|||+|||+|.++..+++.|.. |+++|+++.+++.+++|++.+ ....++.+..+| .+||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~----~~~~~~~~~~~~--------~~fD~Vva 185 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN----GVELNVYLPQGD--------LKADVIVA 185 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc----CCCceEEEccCC--------CCcCEEEE
Confidence 45899999999999999998888775 999999999999999999874 222344433332 26999998
Q ss_pred cchhh---hHHHHHHHhccCCcEEEEEecC
Q psy7837 209 SQAIR---DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~~~---~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
+.... .+.+++.++|+|||.++++...
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 76543 4557899999999999998543
No 76
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.33 E-value=3e-11 Score=100.33 Aligned_cols=105 Identities=24% Similarity=0.310 Sum_probs=82.9
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCee
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYD 204 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD 204 (299)
...++.+|||+|||+|.++..+++. +.+|+++|.++.+++.++++++. ....+++++.+|+...... ...+|
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~-----~~~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR-----FGVKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-----hCCCCeEEEECchHHHHhhCCCCCC
Confidence 4567899999999999999999865 47899999999999999999987 3446899999998642211 13367
Q ss_pred EEEecch--hhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 205 VIYISQA--IRDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 205 ~v~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.+++... +..+.+++.++|+|||.+++......
T Consensus 112 ~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 112 RVCIEGGRPIKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred EEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 7776543 35677899999999999999987643
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=1.2e-11 Score=100.00 Aligned_cols=94 Identities=21% Similarity=0.350 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI 212 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~ 212 (299)
.++||+|||.|.++..++.++.+++++|+++.+++.+++++.. ..+++++++|+...+++ ++||+|++..++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~P~-~~FDLIV~SEVl 116 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFWPE-GRFDLIVLSEVL 116 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT---S-S-EEEEEEES-G
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCCCC-CCeeEEEEehHh
Confidence 6899999999999999999998999999999999999999855 46999999999886654 789999998876
Q ss_pred hh---------HHHHHHHhccCCcEEEEEec
Q psy7837 213 RD---------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 213 ~~---------~~~~~~~~L~~gG~lv~~~~ 234 (299)
.- ..+.+...|+|||.|++...
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 42 33578889999999999754
No 78
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.32 E-value=3.2e-13 Score=99.49 Aligned_cols=89 Identities=24% Similarity=0.343 Sum_probs=58.2
Q ss_pred EEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeEEEecch
Q psy7837 136 LDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDVIYISQA 211 (299)
Q Consensus 136 LDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~~~ 211 (299)
||+|||+|.++..+... ..+++++|+|+.+++.+++++.. ....+......+...... ..++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE-----LGNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH-----CT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-----cCCcceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999999887 77899999999999999888877 344444455444443221 1258999999999
Q ss_pred hhhHH------HHHHHhccCCcEE
Q psy7837 212 IRDIP------WHIVDQLKLGGRM 229 (299)
Q Consensus 212 ~~~~~------~~~~~~L~~gG~l 229 (299)
++++. +.+.++|+|||+|
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 98763 4789999999986
No 79
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.32 E-value=4.9e-12 Score=105.09 Aligned_cols=116 Identities=27% Similarity=0.390 Sum_probs=92.3
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 132 (299)
...+++..|.. .....+||||||++||.+.++++.++++|+++++|.++...+.|++.+.+.
T Consensus 32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a----------------- 93 (205)
T PF01596_consen 32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA----------------- 93 (205)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------------
Confidence 34666766654 556689999999999999999999998999999999999999999999873
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC------CCCCeeEE
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP------DAAPYDVI 206 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~v 206 (299)
+...+++++.+|+..... ..++||+|
T Consensus 94 ------------------------------------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 94 ------------------------------------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp ------------------------------------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred ------------------------------------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 345689999999864211 12579999
Q ss_pred Eecchhhh---HHHHHHHhccCCcEEEEEec
Q psy7837 207 YISQAIRD---IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 207 ~~~~~~~~---~~~~~~~~L~~gG~lv~~~~ 234 (299)
|+++.-.. ..+.+.++|++||.+++..-
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence 99997654 34578899999999999753
No 80
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=3.2e-11 Score=112.06 Aligned_cols=106 Identities=16% Similarity=0.271 Sum_probs=86.6
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+++|++|||+|||+|..+..+++.++..|+++++|+++.+++.+++++..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------------------------ 299 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------------------------ 299 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH------------------------------
Confidence 78999999999999999999999988778999999999999988888876
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCeeEEEecchh--------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYDVIYISQAI-------- 212 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~~-------- 212 (299)
.+..++.++.+|+.... ...++||.|+++++.
T Consensus 300 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r 343 (434)
T PRK14901 300 ------------------------------------LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHR 343 (434)
T ss_pred ------------------------------------cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccccccc
Confidence 35567899999987543 223679999998652
Q ss_pred --------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 213 --------------------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 213 --------------------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
..+.+++.++|||||+|+.++-.-
T Consensus 344 ~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 344 HPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 133457889999999999876544
No 81
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=2e-11 Score=108.63 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
.++.+|||+|||+|.++..+++. +.+++++|.++++++.++++.. ..+++++.+|+.......++||+|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--------~~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--------LKECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--------ccCCeEEeccHHhCCCCCCceeEEE
Confidence 46789999999999999988775 4689999999999999998753 2468899999887555557899999
Q ss_pred ecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837 208 ISQAIRD------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 208 ~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 234 (299)
+..++++ +.+++.++|+|||++++...
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9887754 44689999999999988643
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=3.1e-11 Score=103.89 Aligned_cols=100 Identities=25% Similarity=0.329 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
..+.+|||+|||.|.+++.+++.. .+++.+|+|..+++.+++|+..| ...+..++..|....... +||.|+
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N-----~~~~~~v~~s~~~~~v~~--kfd~Ii 229 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN-----GVENTEVWASNLYEPVEG--KFDLII 229 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-----CCCccEEEEecccccccc--cccEEE
Confidence 345599999999999999999985 47999999999999999999984 555556777777765443 799999
Q ss_pred ecchhh-----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+|++++ .+.....+.|++||.|.+.....
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 999985 34568899999999999998743
No 83
>PRK06922 hypothetical protein; Provisional
Probab=99.31 E-value=2.7e-11 Score=114.49 Aligned_cols=103 Identities=18% Similarity=0.340 Sum_probs=82.8
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCC
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAA 201 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~ 201 (299)
+....++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++... ...++.++++|..... .+.+
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~------~g~~ie~I~gDa~dLp~~fede 486 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN------EGRSWNVIKGDAINLSSSFEKE 486 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------cCCCeEEEEcchHhCccccCCC
Confidence 344567899999999999999888865 67899999999999999988655 2347888999987543 3457
Q ss_pred CeeEEEecchhhhH-------------------HHHHHHhccCCcEEEEEec
Q psy7837 202 PYDVIYISQAIRDI-------------------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 202 ~fD~v~~~~~~~~~-------------------~~~~~~~L~~gG~lv~~~~ 234 (299)
+||+|+++.+++++ .+++.++|||||.+++...
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 89999998776543 3578899999999999764
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.31 E-value=3.7e-11 Score=109.48 Aligned_cols=102 Identities=25% Similarity=0.145 Sum_probs=82.7
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 201 (299)
+.....+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.++++.+. .++++...|.... .+
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~l---~~ 227 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRDL---NG 227 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhhc---CC
Confidence 334446678999999999999999988875 88999999999999999998643 2478888887653 36
Q ss_pred CeeEEEecchhhhH--------HHHHHHhccCCcEEEEEecC
Q psy7837 202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~~~~ 235 (299)
+||.|++...++++ .+++.++|||||.+++....
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 79999988776543 46789999999999997654
No 85
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=3.7e-11 Score=111.16 Aligned_cols=109 Identities=21% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+++|.+|||+|||+|..|..+++.++..|+++++|+++.+++.+++++.+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------------------------ 284 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------------------------ 284 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 78999999999999999999999988888999999999999998888877
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhh----------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIR---------- 213 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~---------- 213 (299)
.+..+++++++|+.... ...++||.|+++++..
T Consensus 285 ------------------------------------~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~ 328 (431)
T PRK14903 285 ------------------------------------LKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPE 328 (431)
T ss_pred ------------------------------------cCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChH
Confidence 34457889999987532 1236799999987651
Q ss_pred ------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837 214 ------------------DIPWHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 214 ------------------~~~~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
.+.+++.++|||||.+++++-+....
T Consensus 329 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 329 VLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 12357889999999999987665443
No 86
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=4.3e-11 Score=111.51 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=86.9
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
..+|++|||+|||+|..+..+++.++..++++++|+++.+++.+++++.+
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------------------------ 297 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------------------------ 297 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------------------------
Confidence 78899999999999999999999887778999999999999988888876
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh------------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI------------ 212 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~------------ 212 (299)
.+..+++++.+|+.... ..++||+|+++++.
T Consensus 298 ------------------------------------~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~ 340 (445)
T PRK14904 298 ------------------------------------LGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAEL 340 (445)
T ss_pred ------------------------------------hCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcch
Confidence 34457899999987644 34679999987542
Q ss_pred ----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 213 ----------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 213 ----------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
..+..++.++|+|||++++++-+..
T Consensus 341 ~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 341 RWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1244678899999999999986654
No 87
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.31 E-value=1.9e-11 Score=103.59 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=80.3
Q ss_pred CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
++|||+|||+|.++..+++. +.+++++|+|+++++.+++++... +...+++++..|...... .++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----GLQGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCCcceEEEecccccCCC-CCCCCEeehHH
Confidence 47999999999999998876 468999999999999999998763 345688999999865433 35799999988
Q ss_pred hhhh------HHHHHHHhccCCcEEEEEec
Q psy7837 211 AIRD------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 211 ~~~~------~~~~~~~~L~~gG~lv~~~~ 234 (299)
++++ +.+++.++|+|||.+++...
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 7754 34689999999999999765
No 88
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.30 E-value=4e-11 Score=99.67 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=93.4
Q ss_pred HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133 (299)
Q Consensus 54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (299)
...++..|.. ..+..+|||+|++.||.+.+++..+..+|+++++|+++++.+.|++++.+.
T Consensus 47 ~g~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------------------ 107 (219)
T COG4122 47 TGALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------------------ 107 (219)
T ss_pred HHHHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------------------
Confidence 3555655553 678899999999999999999999998999999999999999999999983
Q ss_pred eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEE-cCCCCCCC--CCCCeeEEEecc
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC-ADGRRGYP--DAAPYDVIYISQ 210 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~--~~~~fD~v~~~~ 210 (299)
+...++.++. +|..+... ..++||+||++.
T Consensus 108 -----------------------------------------------g~~~~i~~~~~gdal~~l~~~~~~~fDliFIDa 140 (219)
T COG4122 108 -----------------------------------------------GVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA 140 (219)
T ss_pred -----------------------------------------------CCcceEEEEecCcHHHHHHhccCCCccEEEEeC
Confidence 4455688888 47664332 247899999998
Q ss_pred hhh---hHHHHHHHhccCCcEEEEEec
Q psy7837 211 AIR---DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 211 ~~~---~~~~~~~~~L~~gG~lv~~~~ 234 (299)
.-. ...+.+.++|+|||.+++..-
T Consensus 141 dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 141 DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 754 455788999999999999753
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=6.3e-11 Score=104.83 Aligned_cols=99 Identities=26% Similarity=0.362 Sum_probs=80.7
Q ss_pred CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
.+|||+|||+|.++..++.. +.+|+++|+|+.+++.+++|++.+ +...+++++++|+....+ ..+||+|++++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~----~l~~~i~~~~~D~~~~l~-~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH----GLEDRVTLIESDLFAALP-GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCcEEEEECchhhhCC-CCCccEEEECC
Confidence 68999999999999999876 568999999999999999999874 233579999999865443 35799999986
Q ss_pred hh-------------------------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 211 AI-------------------------------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 211 ~~-------------------------------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+. ..+.+.+.++|+|||.+++..+..
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 43 123356788999999999987754
No 90
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.29 E-value=4.6e-11 Score=102.00 Aligned_cols=99 Identities=25% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
..+.+|||+|||+|.++..+++.+ .+++++|+++.++..+++++. .++.++.+|+.......++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchhhCCCCCCceeEEE
Confidence 345799999999999999998875 458999999999998887632 378899999887655557899999
Q ss_pred ecchhhhH------HHHHHHhccCCcEEEEEecCCC
Q psy7837 208 ISQAIRDI------PWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 208 ~~~~~~~~------~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
++.+++++ .+++.++|+|||.+++......
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99887643 4689999999999999875543
No 91
>KOG4300|consensus
Probab=99.29 E-value=2.6e-11 Score=97.78 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=87.4
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeE-EEEcCCCCCC-
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE-FVCADGRRGY- 197 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~- 197 (299)
+.+..+........|||+|||+|..-..+-. .+.+|+++|.+++|-+.+.+.+.. ....++. |++++..+..
T Consensus 66 s~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E-----~k~~~~~~fvva~ge~l~~ 140 (252)
T KOG4300|consen 66 SGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAE-----KKPLQVERFVVADGENLPQ 140 (252)
T ss_pred hhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhh-----ccCcceEEEEeechhcCcc
Confidence 3344444444456789999999998777653 588999999999999999999887 4556776 8999988754
Q ss_pred CCCCCeeEEEecchhh------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 198 PDAAPYDVIYISQAIR------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 198 ~~~~~fD~v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+++++|.|++..++. ....++.++|+|||++++.....
T Consensus 141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 4568999999988774 34579999999999999976544
No 92
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.28 E-value=1.3e-11 Score=114.81 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=105.3
Q ss_pred HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837 118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY 197 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 197 (299)
.+++.+.......++.+|||+|||+|.+++.+++.+..|+++|+++.+++.+++|++. ....+++++.+|+....
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~-----~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL-----NGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH-----hCCCceEEEeCCHHHHH
Confidence 3444444444566778999999999999999999888999999999999999999988 35679999999986422
Q ss_pred ----CCCCCeeEEEecchhh----hHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837 198 ----PDAAPYDVIYISQAIR----DIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269 (299)
Q Consensus 198 ----~~~~~fD~v~~~~~~~----~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (299)
....+||+|+++++-. .+.+.+. .+++++.+++++.+......+..+ .+.++..+.+.++.++ |.+.
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l---~~~gy~~~~~~~~DmF-P~T~ 428 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVSCNPATLARDLEFL---CKEGYGITWVQPVDMF-PHTA 428 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHH---HHCCeeEEEEEEeccC-CCCC
Confidence 1235699999998753 3334433 478999988988765433333333 3345888888888888 6653
No 93
>PLN03075 nicotianamine synthase; Provisional
Probab=99.28 E-value=9.9e-11 Score=101.68 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=82.4
Q ss_pred CCCCEEEEEccCCC-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 66 KYGDKVLEIGTGSG-YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 66 ~~g~~vldiG~G~G-~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
.++++|+|||||.| +.+..++....++++++++|+++.+++.|++.+...
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~----------------------------- 172 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD----------------------------- 172 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-----------------------------
Confidence 37899999999966 556667767778899999999999999999888541
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--------hHH
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR--------DIP 216 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--------~~~ 216 (299)
.....+++|..+|+.+.....+.||+|++. ++. .+.
T Consensus 173 -----------------------------------~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL 216 (296)
T PLN03075 173 -----------------------------------PDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVI 216 (296)
T ss_pred -----------------------------------cCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHH
Confidence 034568999999998754334679999999 432 345
Q ss_pred HHHHHhccCCcEEEEEec
Q psy7837 217 WHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 217 ~~~~~~L~~gG~lv~~~~ 234 (299)
+++.+.|+|||.+++-..
T Consensus 217 ~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 217 EHLGKHMAPGALLMLRSA 234 (296)
T ss_pred HHHHHhcCCCcEEEEecc
Confidence 789999999999999873
No 94
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.27 E-value=9.4e-11 Score=100.92 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEE
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIY 207 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~ 207 (299)
+.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|++.+ +.+++++|....... .++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~--------~~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA--------GGTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCEEEEeechhhcchhcCCCEeEEE
Confidence 458999999999999998865 568999999999999999998773 247889998754321 25799999
Q ss_pred ecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 208 ISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 208 ~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+|++.. .+.+.+.++|+|||++++......
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~ 220 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ 220 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch
Confidence 998642 222456789999999999987654
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.27 E-value=1.2e-10 Score=105.42 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=88.6
Q ss_pred ccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHH
Q psy7837 39 PHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118 (299)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~ 118 (299)
...+..+..+..|.. ..+++.+.+.+.++.+|||+|||+|.++..++.... ..+++++|+++.+++.+++++..
T Consensus 224 ~f~V~p~vLIPRpeT-E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~---- 297 (423)
T PRK14966 224 RFAVNPNVLIPRPET-EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAAD---- 297 (423)
T ss_pred EEEeCCCccCCCccH-HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH----
Confidence 344444444444443 566666665577788999999999999988876532 35677777777777766666654
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY- 197 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 197 (299)
.. .+++++++|.....
T Consensus 298 --------------------------------------------------------------~g-~rV~fi~gDl~e~~l 314 (423)
T PRK14966 298 --------------------------------------------------------------LG-ARVEFAHGSWFDTDM 314 (423)
T ss_pred --------------------------------------------------------------cC-CcEEEEEcchhcccc
Confidence 22 37899999986532
Q ss_pred CCCCCeeEEEecchhh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 198 PDAAPYDVIYISQAIR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 198 ~~~~~fD~v~~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+..++||+|++|++.. .+.+.+.+.|+|||.+++..+...
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q 385 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQ 385 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccH
Confidence 2235799999988641 122356679999999998886643
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=1.5e-10 Score=101.20 Aligned_cols=102 Identities=27% Similarity=0.335 Sum_probs=81.7
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
..++.+|||+|||+|.++..++... .+++++|+++.+++.++++++. ....++.++.+|...... .++||+|
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-----~~~~~i~~~~~d~~~~~~-~~~fD~I 179 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-----GLGARVEFLQGDWFEPLP-GGRFDLI 179 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-----CCCCcEEEEEccccCcCC-CCceeEE
Confidence 3567899999999999999998874 7899999999999999999873 345689999999866443 3689999
Q ss_pred Eecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 207 YISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 207 ~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+++++.. .+.+++.++|++||.+++..+..
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~ 241 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD 241 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence 9986531 12245669999999999977543
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=104.51 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=79.0
Q ss_pred CCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
..+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++++.+ .. ..+++.+|..... .++||+|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-----~l-~~~~~~~D~~~~~--~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-----GL-EGEVFASNVFSDI--KGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CC-CCEEEEccccccc--CCCccEEEEC
Confidence 4589999999999999999874 58999999999999999999884 22 3567778876532 3679999999
Q ss_pred chhhh-----------HHHHHHHhccCCcEEEEEecCC
Q psy7837 210 QAIRD-----------IPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 210 ~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
++++. +..++.+.|+|||.+++..+..
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 88753 3457889999999999987653
No 98
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.26 E-value=9.7e-11 Score=100.05 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=83.2
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++... ....++.++.+|........++||+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL----GLSGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc----ccccCeEEEecccccCCCCCCCccE
Confidence 4467899999999999999998775 78999999999999999987652 2345789999998865544578999
Q ss_pred EEecchhh------hHHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIR------DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~ 234 (299)
|++...++ .+.+.+.+.|++||.+++...
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 99877654 345688999999999988654
No 99
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=1.5e-10 Score=99.76 Aligned_cols=99 Identities=27% Similarity=0.284 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.+.+|||+|||+|.++..++.. +..++++|+++.+++.++++++. ....++.++.+|+.... ..++||+|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~-~~~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR-----LGLDNVTFLQSDWFEPL-PGGKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-----cCCCeEEEEECchhccC-cCCceeEEEE
Confidence 3569999999999999999886 56899999999999999999987 34557999999987643 3478999999
Q ss_pred cchhh--------------------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837 209 SQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
++++. .+.+++.+.|+|||.+++....
T Consensus 161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 76532 2335778899999999998754
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=5.9e-11 Score=99.42 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=73.7
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+++|.+|||+|||+|.++..+++..++.++|+++|+++. .
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~------------------------------ 88 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------D------------------------------ 88 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------c------------------------------
Confidence 588999999999999999999999888889999998771 1
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--------CCCCCeeEEEecchh----
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--------PDAAPYDVIYISQAI---- 212 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD~v~~~~~~---- 212 (299)
...++.++++|+.... ...++||+|+++...
T Consensus 89 -------------------------------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 89 -------------------------------------PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred -------------------------------------CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence 1235778888877531 234679999987632
Q ss_pred -------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 213 -------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 213 -------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
..+.+++.++|+|||.+++.+....
T Consensus 132 ~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 132 TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 2245789999999999999765543
No 101
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=3.4e-11 Score=104.44 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCcH----HHHHHHHc-------CCeEEEEeCChHHHHHHHHHHHh------c------------CCc-
Q psy7837 130 VYGSKVLDIGSGSGY----LSALFAYM-------GAKVYAIEHVKNLCKRAMKNIRR------G------------APA- 179 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~----~~~~la~~-------~~~v~~~D~~~~~~~~a~~~~~~------~------------~~~- 179 (299)
.++.+|||+|||+|. +++.++.. +.+|+|+|+|+.+++.|++.+-. . +..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456799999999995 44445443 35799999999999999985410 0 000
Q ss_pred ---ccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEecC
Q psy7837 180 ---IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 180 ---~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.....++.|.++|.....+..++||+|+|.+++.+ +.+++.+.|+|||.|++....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 00124789999999876555678999999988754 445889999999999986543
No 102
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=1.5e-10 Score=107.90 Aligned_cols=106 Identities=24% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+++|++|||+|||+|..+..+++.+++.++++++|+++.+++.+++++.+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------------------------ 297 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------------------------ 297 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence 78899999999999999999999887778999999999999888888876
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhh----------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQAIR---------- 213 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~---------- 213 (299)
.+..++.++++|+..... -.++||+|+++++..
T Consensus 298 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~ 341 (444)
T PRK14902 298 ------------------------------------LGLTNIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPD 341 (444)
T ss_pred ------------------------------------cCCCeEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcc
Confidence 344568999999875421 126799999987521
Q ss_pred ------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 214 ------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 214 ------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+.+.+.++|||||.|+.++-..
T Consensus 342 ~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 342 IKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 24467889999999999875443
No 103
>KOG1540|consensus
Probab=99.25 E-value=1.5e-10 Score=96.45 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=80.4
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
...|+++||++||+|-.+..+.+.+... .
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~---------------------~------------------------------ 126 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQ---------------------F------------------------------ 126 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccc---------------------c------------------------------
Confidence 4677899999999999999988877542 0
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh------hHHHH
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR------DIPWH 218 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~------~~~~~ 218 (299)
...+.+|+.+|+|++|+..++++.... ++.....+.++.+|+.+.+.++++||...+...+. ...++
T Consensus 127 -----~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~E 199 (296)
T KOG1540|consen 127 -----GDRESKVTVLDINPHMLAVGKQRAKKR--PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE 199 (296)
T ss_pred -----CCCCceEEEEeCCHHHHHHHHHHHhhc--CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHH
Confidence 012234555555555555555544321 01223459999999999888889999999888764 34469
Q ss_pred HHHhccCCcEEEEEecCC
Q psy7837 219 IVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 219 ~~~~L~~gG~lv~~~~~~ 236 (299)
++|+|||||++.+-..+.
T Consensus 200 AYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHhcCCCcEEEEEEccc
Confidence 999999999988765443
No 104
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.24 E-value=1.2e-10 Score=104.91 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDV 205 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 205 (299)
..+..+||||||+|.++..+|+. ...++|+|+++.++..+.+++.. ....|+.++.+|+... ..+.+++|.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~-----~gL~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL-----LNLKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEECCHHHhhhhCCCCceeE
Confidence 34679999999999999999988 46799999999999999999887 4667999999998642 234578999
Q ss_pred EEecchhh------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAIR------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~~------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|+++.+.. .+.+++.++|++||.+.+.+....
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 99987654 356789999999999999876543
No 105
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=2.6e-10 Score=94.37 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~ 207 (299)
.++.+|||+|||+|.+++.++.+ ..+|+++|.++.+++.+++|++.+ ...+++++.+|+..... ...+||+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~-----~~~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL-----KAGNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh-----CCCcEEEEEchHHHHHhhcCCCceEEE
Confidence 45789999999999999976555 467999999999999999999883 45689999999875332 224699999
Q ss_pred ecchh-hhHHH----HHHH--hccCCcEEEEEecCC
Q psy7837 208 ISQAI-RDIPW----HIVD--QLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~-~~~~~----~~~~--~L~~gG~lv~~~~~~ 236 (299)
+++++ ..+.+ .+.. +|++++++++.....
T Consensus 127 ~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 127 VDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 99994 23333 3333 368899999987654
No 106
>PRK05785 hypothetical protein; Provisional
Probab=99.24 E-value=7.2e-11 Score=100.11 Aligned_cols=83 Identities=22% Similarity=0.151 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
++.+|||+|||+|.++..+++. +.+|+++|+|++|++.++++ ..++++|+...+.++++||+|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------------~~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------------DDKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------------cceEEechhhCCCCCCCEEEEEec
Confidence 4789999999999999999988 68999999999999998763 124678888766667899999999
Q ss_pred chhhhH------HHHHHHhccCC
Q psy7837 210 QAIRDI------PWHIVDQLKLG 226 (299)
Q Consensus 210 ~~~~~~------~~~~~~~L~~g 226 (299)
.+++++ .+++.++|||.
T Consensus 118 ~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 118 FALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ChhhccCCHHHHHHHHHHHhcCc
Confidence 988654 36899999994
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=1.1e-10 Score=98.32 Aligned_cols=103 Identities=19% Similarity=0.140 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCC-------cccCCCCeEEEEcCCCCCCCC-CC
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP-------AIALAENFEFVCADGRRGYPD-AA 201 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~-------~~~~~~~v~~~~~d~~~~~~~-~~ 201 (299)
.++.+|||+|||.|..+..++++|.+|+++|+|+.+++.+.+....... ......++++.++|+...... ..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3478999999999999999999999999999999999987432111000 001235789999999865432 25
Q ss_pred CeeEEEecchhhhH--------HHHHHHhccCCcEEEEE
Q psy7837 202 PYDVIYISQAIRDI--------PWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 202 ~fD~v~~~~~~~~~--------~~~~~~~L~~gG~lv~~ 232 (299)
.||.|+-..++.++ .+.+.++|+|||.+++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 79999977766554 35789999999975543
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.23 E-value=2.4e-10 Score=100.38 Aligned_cols=100 Identities=24% Similarity=0.298 Sum_probs=80.7
Q ss_pred CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
.+|||+|||+|.+++.++.. +.+|+++|+|+.+++.+++|++.+ ....++.++.+|....... .+||+|++++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~----~~~~~v~~~~~d~~~~~~~-~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN----QLEHRVEFIQSNLFEPLAG-QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEECchhccCcC-CCccEEEECC
Confidence 68999999999999999886 468999999999999999999873 2334599999998764432 4799999986
Q ss_pred hhh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 211 AIR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 211 ~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+.. .+.+.+.+.|+|||.+++.++...
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q 248 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ 248 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 431 223467789999999999988654
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.23 E-value=1.7e-10 Score=106.92 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=48.7
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+...|. +.+|++|||+|||+|..+..+++.++ +++++++|+++.+++.+++++.+
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r 284 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKR 284 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 33444454 78999999999999999999999886 78999999999999999888876
No 110
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.22 E-value=9.5e-11 Score=99.96 Aligned_cols=115 Identities=18% Similarity=0.277 Sum_probs=92.5
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 132 (299)
....++..|.. .....+|||+|++.||.+.++++.++++|+++++|.++...+.|++.+.+.
T Consensus 66 ~~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a----------------- 127 (247)
T PLN02589 66 DEGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA----------------- 127 (247)
T ss_pred HHHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------------
Confidence 34566666654 556689999999999999999999988999999999999999999999873
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-------CCCeeE
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-------AAPYDV 205 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~fD~ 205 (299)
+...+++++.+|+.+.++. .++||+
T Consensus 128 ------------------------------------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 128 ------------------------------------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred ------------------------------------------------CCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 4567899999988753221 258999
Q ss_pred EEecchhhh---HHHHHHHhccCCcEEEEEe
Q psy7837 206 IYISQAIRD---IPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 206 v~~~~~~~~---~~~~~~~~L~~gG~lv~~~ 233 (299)
||+++.-.. ..+.+.++|++||.+++..
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999987543 3357789999999988864
No 111
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.22 E-value=1.8e-10 Score=99.18 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=84.3
Q ss_pred eEEEEeCCHHHHH-HHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHH
Q psy7837 94 KVYTIEHIPELLE-AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK 171 (299)
Q Consensus 94 ~v~~~d~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~ 171 (299)
.+++++|+.+-.. ...+++.. .+ ....|++|||||||+|+++..++..|++ |+|+|.+.......+.
T Consensus 88 ~l~gi~IDtEWrSd~KW~rl~p----------~l-~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 88 SLFGIHIDTEWRSDWKWDRLLP----------HL-PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred ccCCEeecccccccchHHHHHh----------hh-CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHH
Confidence 5778888776642 22233322 11 2357999999999999999999999986 9999999887666443
Q ss_pred HHHhcCCcccCCCC-eEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHHHHHhccCCcEEEEEec
Q psy7837 172 NIRRGAPAIALAEN-FEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 172 ~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv~~~~ 234 (299)
.-+- .+... +.+...-+..... .+.||+|++-+++.|. ..++...|++||.|++.+.
T Consensus 157 i~~~-----lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 157 IKHF-----LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred HHHH-----hCCCccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 2222 11222 2222223333333 5789999999998653 4689999999999998754
No 112
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=2.1e-10 Score=92.95 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=78.4
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.....++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++.. ..+++++.+|+.........||.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhcCCccccCCCE
Confidence 34556788999999999999999999988999999999999999988743 35899999999876554456999
Q ss_pred EEecchhhhHHH---HHHHh--ccCCcEEEEEe
Q psy7837 206 IYISQAIRDIPW---HIVDQ--LKLGGRMLFIK 233 (299)
Q Consensus 206 v~~~~~~~~~~~---~~~~~--L~~gG~lv~~~ 233 (299)
|+++.+++...+ .+.+. +.++|.+++..
T Consensus 81 vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 999988764333 33322 23667776654
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=9.3e-11 Score=110.47 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=80.0
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVI 206 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v 206 (299)
..++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++.. ....++.++++|+.. ...+.++||+|
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~-------~~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESIN-------GHYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHh-------ccCCceEEEEecccccccCCCCCCEEEE
Confidence 346779999999999999999999889999999999998876532 234689999999863 22344789999
Q ss_pred Eecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837 207 YISQAIRD--------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 207 ~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 234 (299)
+++.++++ +.+++.++|+|||++++...
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99988764 33578999999999998653
No 114
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=3e-10 Score=105.29 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=81.1
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
+.+|++|||+|||+|..+..+++..+. ++++++|+++.+++.+++++..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~------------------------------ 290 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQR------------------------------ 290 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHH------------------------------
Confidence 789999999999999999999987743 7899999999888888888766
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEecchhh---------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYISQAIR--------- 213 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~~~--------- 213 (299)
.+. ++.++++|+.... ...++||.|+++++..
T Consensus 291 ------------------------------------~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p 333 (427)
T PRK10901 291 ------------------------------------LGL-KATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHP 333 (427)
T ss_pred ------------------------------------cCC-CeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCc
Confidence 222 3678888887532 2346799999887532
Q ss_pred -------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 214 -------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 214 -------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+.+.+.++|||||++++++...
T Consensus 334 ~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 334 DIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 24457888999999999887543
No 115
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=106.49 Aligned_cols=101 Identities=23% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC----CCCCe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP----DAAPY 203 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~----~~~~f 203 (299)
.++++|||+|||+|.+++.++..++ +|+++|+|+.+++.+++|++.| +.. .+++++++|+..... ...+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N----gl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN----KLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4588999999999999998777765 7999999999999999999984 222 479999999875321 23579
Q ss_pred eEEEecchhh---------------hHHHHHHHhccCCcEEEEEec
Q psy7837 204 DVIYISQAIR---------------DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 204 D~v~~~~~~~---------------~~~~~~~~~L~~gG~lv~~~~ 234 (299)
|+|+++++.- .+.....++|++||.+++...
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999998741 122356889999999987543
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=9.3e-11 Score=94.67 Aligned_cols=99 Identities=20% Similarity=0.291 Sum_probs=82.4
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV 205 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~ 205 (299)
+.++.+|||+|||.|.+...+.. ++.+.+|+|+++..+..+.++ .+.++++|+...+ .++++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhhCCCCCccE
Confidence 57799999999999999998877 588999999999988777654 6779999998643 45689999
Q ss_pred EEecchhhhHH---HHHHHhccCCcEEEEEecCCCCc
Q psy7837 206 IYISQAIRDIP---WHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 206 v~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
|+++.+++++. .-+.++|+-|...++++++-...
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W 115 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHW 115 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHH
Confidence 99999998765 35677888999999999886544
No 117
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.21 E-value=2.3e-10 Score=95.40 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=64.2
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.+.++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|++++ .++.+.++|+.. +...++||+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-CCCCCCEEE
Confidence 3456789999999999999999876 678999999999999998763 246778888877 445578999
Q ss_pred EEecchhhhH
Q psy7837 206 IYISQAIRDI 215 (299)
Q Consensus 206 v~~~~~~~~~ 215 (299)
|+++.+++++
T Consensus 109 V~~~~vL~hl 118 (204)
T TIGR03587 109 VLTKGVLIHI 118 (204)
T ss_pred EEECChhhhC
Confidence 9999998765
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.20 E-value=2.2e-10 Score=97.75 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=82.6
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVI 206 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v 206 (299)
...++.+|||+|||+|.++..+++.+.+++++|+++.++..+++++... ..++.++..|..... ...++||+|
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc------CCceEEEecCHHHhhhhcCCCccEE
Confidence 4567889999999999999999999999999999999999999887652 226778888776533 233689999
Q ss_pred Eecchhhh------HHHHHHHhccCCcEEEEEecC
Q psy7837 207 YISQAIRD------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 207 ~~~~~~~~------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
++..++.+ +.+.+.+.|+|||.+++....
T Consensus 119 i~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 119 TCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99876653 446889999999999988654
No 119
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.20 E-value=3.3e-10 Score=96.03 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~ 208 (299)
..+.+|||+|||+|.++..+++.+..++++|.++.+++.+++++.. ....++.+...|+...... .++||+|++
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-----DPLLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-----cCCCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 3578999999999999999998888999999999999999998876 2333688888887654332 368999999
Q ss_pred cchhhh------HHHHHHHhccCCcEEEEEecCC
Q psy7837 209 SQAIRD------IPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 209 ~~~~~~------~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
...+++ +.+.+.+.|++||.+++.....
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 877654 4468899999999999876543
No 120
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=1.1e-10 Score=114.36 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCC-CCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALA-ENFEFVCADGRRGYP-DAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fD~v 206 (299)
.++++|||+|||+|.+++.+++.|+ .|+++|+|+.+++.+++|++.| +.. .+++++++|+..... ...+||+|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n----g~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN----GLSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCccceEEEEccHHHHHHHcCCCcCEE
Confidence 4588999999999999999999887 4999999999999999999885 222 479999999865321 13579999
Q ss_pred Eecchh-----------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 207 YISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 207 ~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+++++. ..+...+.++|+|||.+++.+....
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~ 660 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG 660 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999863 1234567889999999988776543
No 121
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.5e-10 Score=98.72 Aligned_cols=97 Identities=25% Similarity=0.288 Sum_probs=79.6
Q ss_pred eEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837 134 KVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 211 (299)
+|||+|||||..++.++..+. +|+++|+|+.+++.|++|++.+ +..++.++.+|...... ++||+|++|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-----~l~~~~~~~~dlf~~~~--~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-----GLVRVLVVQSDLFEPLR--GKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-----CCccEEEEeeecccccC--CceeEEEeCCC
Confidence 799999999999999998864 8999999999999999999984 33677777777665444 37999999987
Q ss_pred hh-------------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 212 IR-------------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 212 ~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.- .+..++.+.|++||.+++..+...
T Consensus 186 Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 186 YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 41 222467889999999999987544
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.20 E-value=3.1e-10 Score=107.02 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS 146 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~ 146 (299)
++.+|||+|||+|.++..++.... ..+++++|+++.+++.+++++...
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~------------------------------- 185 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKY------------------------------- 185 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 356899999999999998887653 356777777777777777766541
Q ss_pred HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh-------------
Q psy7837 147 ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR------------- 213 (299)
Q Consensus 147 ~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~------------- 213 (299)
....++.++.+|...... .++||+|+++++..
T Consensus 186 ----------------------------------~l~~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 186 ----------------------------------EVTDRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred ----------------------------------CCccceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhh
Confidence 233578899999765432 35799999987531
Q ss_pred -------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 214 -------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 214 -------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+.+.+.+.|+|||.+++.++..
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 12245678999999999977543
No 123
>KOG1271|consensus
Probab=99.18 E-value=2.5e-10 Score=90.31 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=81.5
Q ss_pred eEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 211 (299)
+|||+|||.|.+...+++.|.+ .+++|.|+.+++.|+..+++. .....++|.+.|+.++-...+.||+|.--+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~----~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD----GFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc----CCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 9999999999999999998754 999999999999999988884 3344499999999986555578998875554
Q ss_pred hhhH--------------HHHHHHhccCCcEEEEEecCCCC
Q psy7837 212 IRDI--------------PWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 212 ~~~~--------------~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
+..+ .+.+.++|+|||+++|..-+...
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 4321 24788999999999998776653
No 124
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.17 E-value=8.2e-11 Score=106.61 Aligned_cols=129 Identities=14% Similarity=0.061 Sum_probs=100.1
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---C----------
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---D---------- 199 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~---------- 199 (299)
.+|||++||+|.+++.+++....|+++|.++.+++.+++|++. ....+++++.+|+..... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~-----~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAA-----NGIDNVQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHH-----hCCCcEEEEECCHHHHHHHHhhcccccccccc
Confidence 5799999999999999998888899999999999999999988 355689999999864221 0
Q ss_pred ---CCCeeEEEecchhhhHHHHH-HHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccccc
Q psy7837 200 ---AAPYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271 (299)
Q Consensus 200 ---~~~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (299)
...||+|+++++-..+.+++ ..+.++++++++++.+......+..+. . ++..+.+.++.++ |.+.--
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-gY~l~~v~~~DmF-PqT~Hv 353 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-THKVERFALFDQF-PYTHHM 353 (362)
T ss_pred cccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-CcEEEEEEEcccC-CCCCcE
Confidence 12589999999976555544 444467999999998865444444443 2 4888999999998 776543
No 125
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.16 E-value=6e-10 Score=94.12 Aligned_cols=100 Identities=27% Similarity=0.390 Sum_probs=80.9
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++.. ...++.++.+|+.......++||+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-------~~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-------LPLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-------cCCCceEEecchhcCCCCCCcEEE
Confidence 3478999999999999999998774 379999999999999988753 234788999998865544578999
Q ss_pred EEecchhh------hHHHHHHHhccCCcEEEEEecC
Q psy7837 206 IYISQAIR------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 206 v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
|++...++ .+.+++.++|+|||++++....
T Consensus 110 i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 110 VTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99877654 3456889999999999986543
No 126
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.16 E-value=4.3e-10 Score=99.53 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
++.+|||+|||+|.++..+++.|.+|+++|+|+.|++.++++++..........++.|..+|.... .++||+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 578999999999999999999999999999999999999998865200001234678888887542 36799999988
Q ss_pred hhhhHH
Q psy7837 211 AIRDIP 216 (299)
Q Consensus 211 ~~~~~~ 216 (299)
++.+++
T Consensus 221 vL~H~p 226 (315)
T PLN02585 221 VLIHYP 226 (315)
T ss_pred EEEecC
Confidence 876654
No 127
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.16 E-value=9.3e-11 Score=105.84 Aligned_cols=128 Identities=14% Similarity=0.056 Sum_probs=99.5
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-------------
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD------------- 199 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------------- 199 (299)
.+|||++||+|.+++.+++....|+++|.++++++.+++|++. ....+++++.+|+......
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~-----~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 273 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAA-----NNIDNVQIIRMSAEEFTQAMNGVREFRRLKGI 273 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH-----cCCCcEEEEEcCHHHHHHHHhhcccccccccc
Confidence 4799999999999999998888999999999999999999988 4556899999998742211
Q ss_pred ---CCCeeEEEecchhhhHHHHH-HHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837 200 ---AAPYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 200 ---~~~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
...||+|+++++-..+.+.+ ..+.++++++++++.+......+..+. ++ ++...+.++.++ |.+.-
T Consensus 274 ~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y~l~~v~~~DmF-P~T~H 343 (353)
T TIGR02143 274 DLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-HRVERFALFDQF-PYTHH 343 (353)
T ss_pred ccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-cEEEEEEEcccC-CCCCc
Confidence 12389999999865544433 445568999999998876555555443 23 888888899888 77754
No 128
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-10 Score=107.31 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=112.1
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC
Q psy7837 116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR 195 (299)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 195 (299)
++++++.+.......++.++||+.||.|.+++.+|+...+|+|+|+++.+++.|++|++. ++..|++|+.+++..
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~-----n~i~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA-----NGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH-----cCCCcEEEEeCCHHH
Confidence 445666666666778889999999999999999999999999999999999999999999 577789999999885
Q ss_pred CCCC---CCCeeEEEecchhhhHHH---HHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceeccccccc
Q psy7837 196 GYPD---AAPYDVIYISQAIRDIPW---HIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269 (299)
Q Consensus 196 ~~~~---~~~fD~v~~~~~~~~~~~---~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (299)
.... ...+|.|+.+++-..+.+ +....++|..++++++++......+..+.. .++....+..+.++ |.+.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~---~gy~i~~v~~~DmF-P~T~ 428 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILAS---TGYEIERVQPFDMF-PHTH 428 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh---CCeEEEEEEEeccC-CCcc
Confidence 4332 247899999998765553 334456788999999988765554444444 44556666667666 5543
No 129
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.15 E-value=9.1e-10 Score=97.84 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=82.9
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA 200 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 200 (299)
+.....+.++.+|||+|||+|.++..+++. +.+++++|. +.+++.++++++.. +...+++++.+|+.....+
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----gl~~rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----GVADRMRGIAVDIYKESYP- 214 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC----CccceEEEEecCccCCCCC-
Confidence 333445677889999999999999999887 467999997 78999999998773 3456899999998753332
Q ss_pred CCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837 201 APYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 201 ~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 234 (299)
.+|+|++...++. +.+++.+.|+|||++++...
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 3699988776542 44688999999999999864
No 130
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.4e-09 Score=95.49 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=90.3
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAA 201 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~ 201 (299)
+-.++..++|..|||--||||.+.+.+...|+.++|+|++..|++-++.|++. .......+... |+...+...+
T Consensus 189 mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-----y~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-----YGIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-----hCcCceeEEEecccccCCCCCC
Confidence 44455678999999999999999999999999999999999999999999998 34556655555 8887666666
Q ss_pred CeeEEEecchh---------------hhHHHHHHHhccCCcEEEEEec
Q psy7837 202 PYDVIYISQAI---------------RDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 202 ~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
++|.|+++++. ....+.+.++|++||++++..+
T Consensus 264 ~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 79999999874 2344688999999999999987
No 131
>PRK04457 spermidine synthase; Provisional
Probab=99.14 E-value=4.7e-10 Score=97.16 Aligned_cols=103 Identities=19% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v 206 (299)
.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++... ....+++++.+|+..... ..++||+|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~----~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP----ENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC----CCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 45689999999999999988776 568999999999999999987652 234689999999865322 12579999
Q ss_pred Eecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+++..- ..+.+.+.+.|+|||++++.....
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 987421 345678999999999999975543
No 132
>KOG1541|consensus
Probab=99.13 E-value=9e-11 Score=95.60 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=94.9
Q ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHH
Q psy7837 95 VYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIR 174 (299)
Q Consensus 95 v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~ 174 (299)
.-.++|..+|.+++.+.+.. .-....-+||||||+|..+..+...|...+++|+|+.|++.|.+.
T Consensus 27 sri~~IQ~em~eRaLELLal-------------p~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-- 91 (270)
T KOG1541|consen 27 SRIVLIQAEMAERALELLAL-------------PGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-- 91 (270)
T ss_pred ceeeeehHHHHHHHHHHhhC-------------CCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--
Confidence 44567778888888877754 111356799999999999999999999999999999999999863
Q ss_pred hcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhhhHH-----------------HHHHHhccCCcEEEEEecCC
Q psy7837 175 RGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIRDIP-----------------WHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 175 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~-----------------~~~~~~L~~gG~lv~~~~~~ 236 (299)
. . .-.++.+|+-.+. +..+.||-+|+...+.|+- ..++..|++|++.|+...+.
T Consensus 92 e------~--egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 92 E------L--EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred h------h--hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 1 1 1357788877643 4568999999877664332 35889999999999999887
Q ss_pred CCcc
Q psy7837 237 DDIM 240 (299)
Q Consensus 237 ~~~~ 240 (299)
+..+
T Consensus 164 n~~q 167 (270)
T KOG1541|consen 164 NEAQ 167 (270)
T ss_pred chHH
Confidence 7665
No 133
>KOG2899|consensus
Probab=99.12 E-value=6.9e-11 Score=97.58 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=110.2
Q ss_pred HHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEE
Q psy7837 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVL 136 (299)
Q Consensus 57 ~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vL 136 (299)
-+..|.+.+-.+..+|||||.+|.+|..+++.+++ -.+.|+||++.+++.|++.++... ... ...++.-+.
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~-------~~~-~~~~~~~~~ 118 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPC-------DHE-TEVSGKFPA 118 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccc-------ccc-ccccCCCcc
Confidence 34455666778889999999999999999999986 569999999999999999987631 111 111122233
Q ss_pred EEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--
Q psy7837 137 DIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR-- 213 (299)
Q Consensus 137 DiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~-- 213 (299)
..+.-.|.++. +.-+ .....|...+.. ....|..+...|.. ......||+|+|-....
T Consensus 119 ~~~~~~~~is~---~~~a~~a~t~~~p~n~~--------------f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWI 179 (288)
T KOG2899|consen 119 SFGVQFGPISQ---RNEADRAFTTDFPDNVW--------------FQKENYVLESDDFL--DMIQPEFDIILCLSITKWI 179 (288)
T ss_pred ccccccccccc---cccccccccccCCcchh--------------cccccEEEecchhh--hhccccccEEEEEEeeeeE
Confidence 33333333322 1111 111112111100 11234444444433 22336799999866543
Q ss_pred ----------hHHHHHHHhccCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecceecccccccc
Q psy7837 214 ----------DIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSL 270 (299)
Q Consensus 214 ----------~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (299)
.+..++.++|.|||+|++.-.++.......+..+..........+.+-.|.+.+.+.
T Consensus 180 HLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~ 246 (288)
T KOG2899|consen 180 HLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQI 246 (288)
T ss_pred ecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhh
Confidence 345689999999999999877776554444443334455555556555555333333
No 134
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=1.4e-09 Score=79.44 Aligned_cols=94 Identities=28% Similarity=0.367 Sum_probs=76.8
Q ss_pred eEEEEcCCCcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEEecch
Q psy7837 134 KVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIYISQA 211 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~ 211 (299)
+++|+|||+|.++..+++ .+.+++++|.++..+..+++.... ....++.+...|...... ...+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-----LLADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-----ccccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999987 567899999999999998865444 355789999999886543 3467999999988
Q ss_pred hhh-------HHHHHHHhccCCcEEEEE
Q psy7837 212 IRD-------IPWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 212 ~~~-------~~~~~~~~L~~gG~lv~~ 232 (299)
+.. +.+.+.+.|++||.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 743 346788899999999887
No 135
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=7.8e-10 Score=88.52 Aligned_cols=76 Identities=29% Similarity=0.395 Sum_probs=67.4
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
....|++|+|+|||||.+++..+-+|+ +|+++|+++++++.+++|... ...++.|+.+|+.+.. .++|.+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~------l~g~v~f~~~dv~~~~---~~~dtv 112 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE------LLGDVEFVVADVSDFR---GKFDTV 112 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh------hCCceEEEEcchhhcC---CccceE
Confidence 445688999999999999999999996 599999999999999999887 5678999999998754 558999
Q ss_pred Eecchh
Q psy7837 207 YISQAI 212 (299)
Q Consensus 207 ~~~~~~ 212 (299)
++|+++
T Consensus 113 imNPPF 118 (198)
T COG2263 113 IMNPPF 118 (198)
T ss_pred EECCCC
Confidence 999987
No 136
>PRK00811 spermidine synthase; Provisional
Probab=99.11 E-value=6.6e-10 Score=97.39 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY 207 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~ 207 (299)
.+++||++|||+|..+..+++. + .+|+++|+++.+++.+++.+...........+++++.+|+..... ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 4 579999999999999999886421110125689999999875332 246899999
Q ss_pred ecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
++..- ..+.+.+.+.|+|||++++.....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 98532 234467899999999999876543
No 137
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.10 E-value=1.2e-09 Score=93.01 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=65.7
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..++.+|||+|||+|.++..+++.+..|+++|+++.+++.+++++... ....++.+..+|... ..++||+|++
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~----~~~~~i~~~~~d~~~---~~~~fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA----GLAGNITFEVGDLES---LLGRFDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----CCccCcEEEEcCchh---ccCCcCEEEE
Confidence 356789999999999999999999999999999999999999988762 222588999999432 2367999999
Q ss_pred cchhhh
Q psy7837 209 SQAIRD 214 (299)
Q Consensus 209 ~~~~~~ 214 (299)
..++++
T Consensus 134 ~~~l~~ 139 (230)
T PRK07580 134 LDVLIH 139 (230)
T ss_pred cchhhc
Confidence 888754
No 138
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.10 E-value=8e-10 Score=99.76 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=87.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC----CCCCeeE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP----DAAPYDV 205 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~ 205 (299)
.|++||++.|=||.++..++..|+ +|+++|.|...++.+++|++.|+ ....+..++++|+...+. ...+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG---LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC---CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 399999999999999999999999 79999999999999999999863 234678999999885332 2358999
Q ss_pred EEecchh---------------hhHHHHHHHhccCCcEEEEEecCCCC
Q psy7837 206 IYISQAI---------------RDIPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 206 v~~~~~~---------------~~~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
|+++++. ..+...+.++|+|||.++++......
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 9999973 23456889999999999998876543
No 139
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=8.9e-10 Score=93.99 Aligned_cols=94 Identities=22% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc----C--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM----G--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY 203 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~----~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 203 (299)
.++.+|||+|||+|.++..+++. | .+|+++|+++.+++.++++... .++.+...+........++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEecccccccCCCc
Confidence 56789999999999999888752 3 5899999999999999887533 34566666554433345789
Q ss_pred eEEEecchhhhHH--------HHHHHhccCCcEEEEEe
Q psy7837 204 DVIYISQAIRDIP--------WHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 204 D~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 233 (299)
|+|+++.+++++. +++.++++ |.+++..
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9999999887654 35666666 4444443
No 140
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=1.6e-09 Score=90.94 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh-------cCCcccCCCCeEEEEcCCCCCCC---CC
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-------GAPAIALAENFEFVCADGRRGYP---DA 200 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~---~~ 200 (299)
++.+||+.|||.|.-...|+++|.+|+|+|+|+..++.+.+.... +........++++.++|+..... ..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 468999999999999999999999999999999999998663210 00000123589999999987542 12
Q ss_pred CCeeEEEecchhhhHH--------HHHHHhccCCcEEEEEec
Q psy7837 201 APYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 201 ~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~ 234 (299)
+.||.|+-.+.+.+++ +.+.++|+|||.+++.+.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 6799999888876655 478899999999988765
No 141
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=1.7e-09 Score=89.24 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=35.3
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~ 104 (299)
.+++|++|||+|||+|.++..+++.....++++++|+++.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 46899999999999999999999887667789999988743
No 142
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.05 E-value=4e-09 Score=93.35 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
....+.+.+.+.++.+|||+|||+|..+..+.+.+....+++++|+++.|++.+++.+...
T Consensus 51 ~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~------------------- 111 (301)
T TIGR03438 51 ERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD------------------- 111 (301)
T ss_pred HHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-------------------
Confidence 3334444445678889999999999999999887643456888888888887777776541
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCC---CCeeEEEec
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDA---APYDVIYIS 209 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~---~~fD~v~~~ 209 (299)
....++.++++|+.+.. ... ....+++++
T Consensus 112 ----------------------------------------------~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~g 145 (301)
T TIGR03438 112 ----------------------------------------------YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPG 145 (301)
T ss_pred ----------------------------------------------CCCceEEEEEEcccchhhhhcccccCCeEEEEec
Confidence 12346778899987532 211 123344444
Q ss_pred chhh--------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 210 QAIR--------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 210 ~~~~--------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
..+. .+.+++.+.|+|||.+++.....
T Consensus 146 s~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 146 STIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 4432 34568899999999999876543
No 143
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.04 E-value=8.3e-09 Score=84.99 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=78.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---C-CCCCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---P-DAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~-~~~~fD 204 (299)
..+.+|||++||+|.+++.++++|+ .|+++|.++.+++.+++|++.+ ....+++++.+|+.... . ....||
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~----~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALL----KSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh----CCcccEEEEehhHHHHHHHhhccCCCce
Confidence 4688999999999999999999987 6999999999999999999884 23347899999985421 1 122489
Q ss_pred EEEecchhhh-----HHHHH--HHhccCCcEEEEEecC
Q psy7837 205 VIYISQAIRD-----IPWHI--VDQLKLGGRMLFIKGH 235 (299)
Q Consensus 205 ~v~~~~~~~~-----~~~~~--~~~L~~gG~lv~~~~~ 235 (299)
+|+.++++.. +.+.+ ..+|+++|.+++....
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999998742 22222 2368889988887654
No 144
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.02 E-value=3.3e-09 Score=87.60 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=87.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHH
Q psy7837 91 ISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKR 168 (299)
Q Consensus 91 ~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~ 168 (299)
+.|..+-+|....+.......-+ .+......++..|+|+.||.|.+++.+++ .+..|+++|++|..++.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er---------~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~ 140 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTER---------RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY 140 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHH---------HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH
T ss_pred eCCEEEEEccceEEEccccHHHH---------HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH
Confidence 36789999988777543211111 12222467899999999999999999998 57789999999999999
Q ss_pred HHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEE
Q psy7837 169 AMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRML 230 (299)
Q Consensus 169 a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv 230 (299)
+++|++.| ....++..+.+|...... ...||.|+++.+- ..+.+.+.+++++||++.
T Consensus 141 L~~Ni~lN----kv~~~i~~~~~D~~~~~~-~~~~drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 141 LKENIRLN----KVENRIEVINGDAREFLP-EGKFDRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHT----T-TTTEEEEES-GGG----TT-EEEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHc----CCCCeEEEEcCCHHHhcC-ccccCEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 99999996 556778999999987655 5789999998874 356788999999999875
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.00 E-value=4.3e-09 Score=91.72 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY 207 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~ 207 (299)
.+++||++|||+|.++..+.+.. .+++++|+++++++.+++.+...+.. ....+++++.+|+..... ..++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS-YDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc-ccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999999888774 57999999999999999987542100 123578888888764221 136799999
Q ss_pred ecchh----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAI----------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
++... ....+.+.+.|+|||.+++....+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 97752 234468899999999999985543
No 146
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.00 E-value=2.6e-09 Score=88.53 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v 206 (299)
.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++ +++++++|+.... ...++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 46789999999999999988765 56799999999999887542 4678888876522 334789999
Q ss_pred EecchhhhHH---HHHHHhccCCcEEEEEecCC
Q psy7837 207 YISQAIRDIP---WHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 207 ~~~~~~~~~~---~~~~~~L~~gG~lv~~~~~~ 236 (299)
+++.+++++. ..+.+++++++.+++.+++.
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~ 112 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGRHAIVSFPNF 112 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCCh
Confidence 9999987664 34555666777777776553
No 147
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.99 E-value=7.9e-10 Score=99.78 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=92.6
Q ss_pred HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC
Q psy7837 118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY 197 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 197 (299)
++++.+..+....++ .+||+.||.|.+++.+++...+|+|+|.++.+++.|++|++. +...|++|+.+++.+..
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~-----N~i~n~~f~~~~~~~~~ 257 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKL-----NGIDNVEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHH-----TT--SEEEEE--SHHCC
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHH-----cCCCcceEEEeeccchh
Confidence 444444445555555 899999999999999999999999999999999999999999 57789999988764321
Q ss_pred C----------------CCCCeeEEEecchhhhHHHHHHHhc-cCCcEEEEEecCCCCcceeeeEEeecCCceEEEEecc
Q psy7837 198 P----------------DAAPYDVIYISQAIRDIPWHIVDQL-KLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHP 260 (299)
Q Consensus 198 ~----------------~~~~fD~v~~~~~~~~~~~~~~~~L-~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (299)
. ....+|+|+++++-..+.+.+.+.+ +..=++++++.+......+..+. + +++...+.+
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~-~y~~~~v~~ 333 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---E-GYKLEKVQP 333 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---C-CEEEEEEEE
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---h-cCEEEEEEE
Confidence 0 1125899999998654443322222 34568888887765444444443 2 488888989
Q ss_pred eecccccccc
Q psy7837 261 HVYIHELKSL 270 (299)
Q Consensus 261 ~~~~~~~~~~ 270 (299)
+.++ |.+.-
T Consensus 334 ~DmF-P~T~H 342 (352)
T PF05958_consen 334 VDMF-PQTHH 342 (352)
T ss_dssp E-SS-TTSS-
T ss_pred eecC-CCCCc
Confidence 9888 76653
No 148
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.97 E-value=1e-08 Score=95.34 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=86.3
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG 143 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G 143 (299)
..++|++|||++||+|.-|..+++.++.+|.+++.|+++.-+...++++.+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r----------------------------- 160 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR----------------------------- 160 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH-----------------------------
Confidence 478999999999999999999999998889999999999998888888877
Q ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-CCCCCeeEEEecchhh---------
Q psy7837 144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-PDAAPYDVIYISQAIR--------- 213 (299)
Q Consensus 144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~--------- 213 (299)
.+..++.+...|..... .....||.|+++++..
T Consensus 161 -------------------------------------~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p 203 (470)
T PRK11933 161 -------------------------------------CGVSNVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDP 203 (470)
T ss_pred -------------------------------------cCCCeEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCH
Confidence 35667888888876421 1125699999988742
Q ss_pred -------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837 214 -------------------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 214 -------------------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.+.+.+.++|||||+|+.++-+
T Consensus 204 ~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 204 DALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2334678899999999998765
No 149
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.96 E-value=3.2e-09 Score=89.24 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=76.4
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh--cCCc-----ccCCCCeEEEEcCCCCCCCCC-
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR--GAPA-----IALAENFEFVCADGRRGYPDA- 200 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~--~~~~-----~~~~~~v~~~~~d~~~~~~~~- 200 (299)
..++.+||..|||.|.-...++.+|.+|+|+|+|+.+++.+.+.... .... .....++++.++|+.......
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 45678999999999999999999999999999999999998443211 0000 012347899999998744332
Q ss_pred CCeeEEEecchhhhHH--------HHHHHhccCCcEEEEE
Q psy7837 201 APYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFI 232 (299)
Q Consensus 201 ~~fD~v~~~~~~~~~~--------~~~~~~L~~gG~lv~~ 232 (299)
++||+|+=...+..++ +.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999888776555 4789999999994443
No 150
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.95 E-value=3.5e-09 Score=86.60 Aligned_cols=103 Identities=20% Similarity=0.306 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD 204 (299)
.++.+|||+.||||.++++..++|+ .|+.+|.++..+...++|++.. ....++.++..|....+ ....+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l----~~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL----GLEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH----T-GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh----CCCcceeeeccCHHHHHHhhcccCCCce
Confidence 6799999999999999999999987 5999999999999999999883 23346899999976322 1347899
Q ss_pred EEEecchhhh------HHHHHH--HhccCCcEEEEEecCC
Q psy7837 205 VIYISQAIRD------IPWHIV--DQLKLGGRMLFIKGHE 236 (299)
Q Consensus 205 ~v~~~~~~~~------~~~~~~--~~L~~gG~lv~~~~~~ 236 (299)
+|+++++... +.+.+. .+|+++|.+++.....
T Consensus 117 iIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9999998742 223444 6889999999988665
No 151
>PRK01581 speE spermidine synthase; Validated
Probab=98.94 E-value=1.4e-08 Score=90.38 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 204 (299)
...++||++|||+|.....+.+.. .+|+++|+++++++.|++. +...+.......+++++.+|+..... ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 446799999999999998888874 5799999999999999962 11100000235799999999886332 236799
Q ss_pred EEEecchh-----------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 205 VIYISQAI-----------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 205 ~v~~~~~~-----------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+|+++..- ..+.+.+.+.|+|||++++....+
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 99998532 124468899999999998876544
No 152
>PLN02366 spermidine synthase
Probab=98.93 E-value=2.7e-08 Score=87.82 Aligned_cols=105 Identities=18% Similarity=0.107 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDV 205 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~ 205 (299)
...++||+||||.|.....+++.. .+|+.+|+++.+++.+++.+...+.. ....+++++.+|+..... ..++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~-~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG-FDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc-cCCCceEEEEChHHHHHhhccCCCCCE
Confidence 447899999999999999998873 47999999999999999987542100 234689999999864322 2367999
Q ss_pred EEecchhh----------hHHHHHHHhccCCcEEEEEecC
Q psy7837 206 IYISQAIR----------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 206 v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
|+++..-. .+.+.+.+.|+|||+++....+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 99986431 3456889999999999886544
No 153
>KOG1499|consensus
Probab=98.93 E-value=6.4e-09 Score=90.94 Aligned_cols=108 Identities=26% Similarity=0.251 Sum_probs=83.3
Q ss_pred HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC
Q psy7837 118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG 196 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 196 (299)
++...+....++..++.|||+|||+|.+++..|+.|++ |+++|-|.-+ +.+++.+..| .....++++++.+.+.
T Consensus 47 aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N----~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 47 AYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDN----GLEDVITVIKGKVEDI 121 (346)
T ss_pred HHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhc----CccceEEEeecceEEE
Confidence 44556666777899999999999999999999999976 9999998776 8888888885 4556799999988864
Q ss_pred CCCCCCeeEEEecchh-----hhHHH----HHHHhccCCcEEE
Q psy7837 197 YPDAAPYDVIYISQAI-----RDIPW----HIVDQLKLGGRML 230 (299)
Q Consensus 197 ~~~~~~fD~v~~~~~~-----~~~~~----~~~~~L~~gG~lv 230 (299)
..+..+.|+|++--.= +.+.+ .--+.|+|||.++
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 3335789999874331 22222 3346899999765
No 154
>PHA03411 putative methyltransferase; Provisional
Probab=98.92 E-value=1.5e-08 Score=86.99 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
....+|||+|||+|.++..++.+ +.+|+++|+++.+++.+++++ .+++++++|+..... ..+||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----------~~v~~v~~D~~e~~~-~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----------PEAEWITSDVFEFES-NEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------cCCEEEECchhhhcc-cCCCcEEE
Confidence 34679999999999999988765 568999999999999998763 367899999886543 36799999
Q ss_pred ecchhhhH--------------------------HHHHHHhccCCcEEEEEecC
Q psy7837 208 ISQAIRDI--------------------------PWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 208 ~~~~~~~~--------------------------~~~~~~~L~~gG~lv~~~~~ 235 (299)
+++++.+. ......+|+|+|.+.+....
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 99886421 12345678888877766443
No 155
>KOG3010|consensus
Probab=98.92 E-value=2e-09 Score=89.15 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=75.1
Q ss_pred HhhhcccCCCC-eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837 123 INFYGHLVYGS-KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201 (299)
Q Consensus 123 ~~~~~~~~~~~-~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 201 (299)
...+....++. .++|+|||+|..+..++..-.+|+++|+|+.|++.+++..... ...........+.....-.++
T Consensus 24 ~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~----y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 24 FKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVT----YCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred HHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcc----cccCCccccccccccccCCCc
Confidence 33344445554 8999999999888889999888999999999999998765331 111222222223333333358
Q ss_pred CeeEEEecchhhhHH-----HHHHHhccCCcEEEEEe
Q psy7837 202 PYDVIYISQAIRDIP-----WHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 202 ~fD~v~~~~~~~~~~-----~~~~~~L~~gG~lv~~~ 233 (299)
+.|+|++.-++|++. +.+.++||+.|-++...
T Consensus 100 SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 100 SVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred ceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence 999999999988754 68999999887444443
No 156
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.92 E-value=2e-09 Score=93.52 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDV 205 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~ 205 (299)
..+++|||+.|=+|.+++..+..|+ +|+++|.|..+++.+++|++.|+ ....+++++..|+...+. ..++||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG---LDLDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT----CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCccceEEEecCHHHHHHHHhcCCCCCE
Confidence 4589999999999999999999987 59999999999999999999852 224689999999875321 2368999
Q ss_pred EEecchh------------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAI------------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|+++++. ..+...+.++|+|||.|+++.....
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 9999973 2455678899999999987766544
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=9.5e-09 Score=90.25 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=74.3
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP 202 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 202 (299)
+.......++.+|||||||+|.++..++..+.+|+++|+++.+++.+++++... ....+++++.+|+..... ..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~----~~~~~v~ii~~Dal~~~~--~~ 101 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS----PLASKLEVIEGDALKTEF--PY 101 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc----CCCCcEEEEECCHhhhcc--cc
Confidence 333445678899999999999999999999989999999999999999998762 225689999999876433 35
Q ss_pred eeEEEecchhhhHHHHHHHhc
Q psy7837 203 YDVIYISQAIRDIPWHIVDQL 223 (299)
Q Consensus 203 fD~v~~~~~~~~~~~~~~~~L 223 (299)
||.|+++.+.....+.+.++|
T Consensus 102 ~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEecCCcccCcHHHHHHH
Confidence 899999888754434344444
No 158
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.91 E-value=1.6e-08 Score=82.13 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=72.0
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCC
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDA 200 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 200 (299)
....++.+|||+|||+|..++.++.. ..+|+.+|.++ .++.++.|++.|+. ....++.+...|..... ...
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc--cccccccCcEEEecCccccccccc
Confidence 34577899999999999999999999 67899999999 99999999998521 13567888888875422 233
Q ss_pred CCeeEEEecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 201 APYDVIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 201 ~~fD~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+||+|+...++ ..+.+.+.++|+++|.+++.....
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 679999988775 345578899999999977776544
No 159
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.91 E-value=9.4e-09 Score=85.03 Aligned_cols=102 Identities=24% Similarity=0.295 Sum_probs=80.5
Q ss_pred CeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEE
Q psy7837 133 SKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIY 207 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~ 207 (299)
..+||||||.|.+...+|.. ...++|+|++...+..+.+++.. ....|+.++.+|+... ..+.+++|.|+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~-----~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK-----RGLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH-----HTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh-----hcccceEEEEccHHHHHhhcccCCchheEE
Confidence 38999999999999999987 56799999999999999998888 5789999999998852 23457899999
Q ss_pred ecchhh--------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837 208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
++.+-+ .+.+.+.+.|+|||.+.+.+......
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 988743 34468899999999999998765543
No 160
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=8.9e-09 Score=84.09 Aligned_cols=110 Identities=17% Similarity=0.159 Sum_probs=77.2
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC--Ce---------EEEEeCChHHHHHHHHHHHhcCCcccCCCCeE
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AK---------VYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~---------v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~ 187 (299)
+...+-.++...++..|+|.-||+|.+.++.+..+ .. ++|.|+++.+++.+++|++.. +....+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----g~~~~i~ 91 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----GVEDYID 91 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT----T-CGGEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc----ccCCceE
Confidence 33445566777889999999999999999887763 33 779999999999999999874 4456789
Q ss_pred EEEcCCCCCCCCCCCeeEEEecchhh--------------hHHHHHHHhccCCcEEEEEe
Q psy7837 188 FVCADGRRGYPDAAPYDVIYISQAIR--------------DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 188 ~~~~d~~~~~~~~~~fD~v~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~ 233 (299)
+.++|+.......+++|.|++++++- .+.+++.++|++ ..+++..
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 99999987664457899999999851 234577888888 4344433
No 161
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.2e-07 Score=76.61 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=85.0
Q ss_pred hcc-cCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCC
Q psy7837 126 YGH-LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDA 200 (299)
Q Consensus 126 ~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 200 (299)
+.+ ...|.++||+.+|||.++++.+++|+. ++.+|.+...+..+++|++.. ....+..++..|+... ....
T Consensus 37 l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l----~~~~~~~~~~~da~~~L~~~~~~ 112 (187)
T COG0742 37 LAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL----GLEGEARVLRNDALRALKQLGTR 112 (187)
T ss_pred ccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCccceEEEeecHHHHHHhcCCC
Confidence 444 478999999999999999999999875 999999999999999999872 3357889999998742 1222
Q ss_pred CCeeEEEecchhhh-HH--H------HHHHhccCCcEEEEEecCC
Q psy7837 201 APYDVIYISQAIRD-IP--W------HIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 201 ~~fD~v~~~~~~~~-~~--~------~~~~~L~~gG~lv~~~~~~ 236 (299)
++||+|++++++.. +. . .-..+|+|+|.+++.....
T Consensus 113 ~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 113 EPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 35999999999862 22 1 1246799999999987654
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=2.4e-08 Score=86.50 Aligned_cols=80 Identities=26% Similarity=0.292 Sum_probs=67.0
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.....++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++.. ..+++++++|+..... ..||.
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~-------~~~v~ii~~D~~~~~~--~~~d~ 94 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA-------AGNVEIIEGDALKVDL--PEFNK 94 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------CCCEEEEEeccccCCc--hhceE
Confidence 34556789999999999999999999988999999999999999988643 3589999999986433 34899
Q ss_pred EEecchhhh
Q psy7837 206 IYISQAIRD 214 (299)
Q Consensus 206 v~~~~~~~~ 214 (299)
|+++.+...
T Consensus 95 Vv~NlPy~i 103 (258)
T PRK14896 95 VVSNLPYQI 103 (258)
T ss_pred EEEcCCccc
Confidence 999988753
No 163
>KOG2904|consensus
Probab=98.89 E-value=6.2e-08 Score=81.73 Aligned_cols=102 Identities=21% Similarity=0.129 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CC-CCCCCe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GY-PDAAPY 203 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~f 203 (299)
.+..+||+|||+|..++.++.. ..+|+++|.|+.++..|.+|++++ ....++.+++.+... .. ...+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~----~l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL----KLSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH----hhcCceEEEecccccccccccccccCce
Confidence 3558999999999999988765 567999999999999999999985 566778888655442 22 233789
Q ss_pred eEEEecchhh--------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 204 DVIYISQAIR--------------------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 204 D~v~~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
|++++|++.- ++..-..++|+|||.+.+.....
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 9999998741 22235689999999999998743
No 164
>PHA03412 putative methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=85.32 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHc-----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM-----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~-----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
+.+|||+|||+|.+++.+++. ..+|+++|+++.+++.++++. .++.++.+|+..... .++||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~~~~~D~~~~~~-~~~FDlI 118 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEATWINADALTTEF-DTLFDMA 118 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCEEEEcchhcccc-cCCccEE
Confidence 679999999999999988764 457999999999999999763 247889999875433 3689999
Q ss_pred Eecchh
Q psy7837 207 YISQAI 212 (299)
Q Consensus 207 ~~~~~~ 212 (299)
++|+++
T Consensus 119 IsNPPY 124 (241)
T PHA03412 119 ISNPPF 124 (241)
T ss_pred EECCCC
Confidence 999986
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.88 E-value=1.3e-08 Score=85.82 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=73.0
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHH-HHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837 116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKR-AMKNIRRGAPAIALAENFEFVCADG 193 (299)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~-a~~~~~~~~~~~~~~~~v~~~~~d~ 193 (299)
+.++...+.......++.+|||+|||+|.++..+++.|+ +|+++|++++++.. .+++.+.. .....|++ ..+.
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~---~~~~~ni~--~~~~ 134 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVK---VLERTNIR--YVTP 134 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCee---EeecCCcc--cCCH
Confidence 344445555555556889999999999999999999975 69999999987765 33322100 00112222 1111
Q ss_pred CCCCCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 194 RRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 194 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.....+-..+|++|+... .+.+.+...|++ |.+++-+.+..
T Consensus 135 ~~~~~d~~~~DvsfiS~~--~~l~~i~~~l~~-~~~~~L~KPqF 175 (228)
T TIGR00478 135 ADIFPDFATFDVSFISLI--SILPELDLLLNP-NDLTLLFKPQF 175 (228)
T ss_pred hHcCCCceeeeEEEeehH--hHHHHHHHHhCc-CeEEEEcChHh
Confidence 122222245777665444 377899999999 88888776554
No 166
>PRK03612 spermidine synthase; Provisional
Probab=98.88 E-value=9.1e-09 Score=97.60 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 204 (299)
.++++|||+|||+|..+..+.+.. .+++++|+++++++.++++ +...+.......+++++.+|+..... ..++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 457899999999999999998874 5799999999999999984 22210000123689999999875322 236899
Q ss_pred EEEecchhh-----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 205 VIYISQAIR-----------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 205 ~v~~~~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+|+++.... .+.+.+.+.|+|||.+++...++
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 999986532 24468899999999999976544
No 167
>PLN02672 methionine S-methyltransferase
Probab=98.87 E-value=2.1e-08 Score=100.76 Aligned_cols=109 Identities=23% Similarity=0.183 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcc-----------cCCCCeEEEEcCCCCCC
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAI-----------ALAENFEFVCADGRRGY 197 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~-----------~~~~~v~~~~~d~~~~~ 197 (299)
++.+|||+|||+|.+++.+++. ..+|+++|+|+.+++.|++|++.++-+. ....+++++++|.....
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 3578999999999999999876 3689999999999999999998742100 11247999999988655
Q ss_pred CCC-CCeeEEEecchhh--------------------------------------------hHHHHHHHhccCCcEEEEE
Q psy7837 198 PDA-APYDVIYISQAIR--------------------------------------------DIPWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 198 ~~~-~~fD~v~~~~~~~--------------------------------------------~~~~~~~~~L~~gG~lv~~ 232 (299)
... .+||+|++|++.- .+..+..++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 322 3699999998731 0113556799999999999
Q ss_pred ecCCCCc
Q psy7837 233 KGHEDDI 239 (299)
Q Consensus 233 ~~~~~~~ 239 (299)
++.....
T Consensus 278 iG~~q~~ 284 (1082)
T PLN02672 278 MGGRPGQ 284 (1082)
T ss_pred ECccHHH
Confidence 8866443
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=1.7e-08 Score=88.04 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=68.6
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
...++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++. ..+++++++|+.....+.-.+|.|+
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~--------~~~v~~i~~D~~~~~~~~~~~~~vv 110 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA--------EDNLTIIEGDALKVDLSELQPLKVV 110 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc--------cCceEEEEChhhcCCHHHcCcceEE
Confidence 45678899999999999999999998899999999999999988752 2589999999887543321158899
Q ss_pred ecchhhhHHHHHHHhc
Q psy7837 208 ISQAIRDIPWHIVDQL 223 (299)
Q Consensus 208 ~~~~~~~~~~~~~~~L 223 (299)
+|.+.....+-+.++|
T Consensus 111 ~NlPY~iss~ii~~~l 126 (272)
T PRK00274 111 ANLPYNITTPLLFHLL 126 (272)
T ss_pred EeCCccchHHHHHHHH
Confidence 8888654444444444
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.86 E-value=6e-09 Score=85.81 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=86.2
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--CCCCCCeeE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--YPDAAPYDV 205 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~ 205 (299)
.+.|.+|||...|-|++++..+++|+ .|+.+|.+++.++.|.-|--.. . ....+++++.||+.+. -..+.+||+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr--~-l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR--E-LFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc--c-ccccccEEecccHHHHHhcCCccccce
Confidence 45699999999999999999999999 7999999999999998774321 0 2234689999998742 234578999
Q ss_pred EEecchh---------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAI---------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
|+-+++- ..+.++++++|++||+++-.++++.
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9998873 2455799999999999999998876
No 170
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=4.7e-08 Score=84.43 Aligned_cols=92 Identities=23% Similarity=0.162 Sum_probs=73.3
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee--
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD-- 204 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD-- 204 (299)
....++.+|||+|||+|.++..+++.+..++++|+++.+++.+++++.. ..+++++.+|+...... .+|
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~-------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL-------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc-------CCcEEEEECchhcCChh--HcCCc
Confidence 3456789999999999999999999998999999999999999887632 35899999998865433 366
Q ss_pred -EEEecchhhhHHHHHHHhc-cCCc
Q psy7837 205 -VIYISQAIRDIPWHIVDQL-KLGG 227 (299)
Q Consensus 205 -~v~~~~~~~~~~~~~~~~L-~~gG 227 (299)
.|+++.+++...+.+.++| .+++
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 8888888766656666666 4544
No 171
>KOG1663|consensus
Probab=98.86 E-value=2e-08 Score=82.84 Aligned_cols=115 Identities=18% Similarity=0.300 Sum_probs=93.0
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 132 (299)
....+++.+.. +..+.++||+|.=+||.+...|..+.++|+++++|+++.-.+.+.+..+..
T Consensus 60 d~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a----------------- 121 (237)
T KOG1663|consen 60 DKGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA----------------- 121 (237)
T ss_pred HHHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----------------
Confidence 34555555553 566789999999999999999999999999999999999999987766652
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC------CCCCCeeEE
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY------PDAAPYDVI 206 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~v 206 (299)
+....++++++++...+ .+.+.||++
T Consensus 122 ------------------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 122 ------------------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred ------------------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 56778999999876422 134789999
Q ss_pred Eecchhh---hHHHHHHHhccCCcEEEEEe
Q psy7837 207 YISQAIR---DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 207 ~~~~~~~---~~~~~~~~~L~~gG~lv~~~ 233 (299)
|++..-. ...+++.+++|+||.|++..
T Consensus 154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 9998643 45579999999999999975
No 172
>KOG2361|consensus
Probab=98.84 E-value=6.5e-09 Score=86.13 Aligned_cols=98 Identities=21% Similarity=0.221 Sum_probs=78.8
Q ss_pred eEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CCCCCCCeeE
Q psy7837 134 KVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GYPDAAPYDV 205 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~ 205 (299)
++||+|||.|.....+.+- +..++++|.|+.+++..+++... ...++...+.|... ...+.+++|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~------~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY------DESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc------chhhhcccceeccchhccCCCCcCccce
Confidence 8999999999999988765 36799999999999999998765 34667777777763 2345589999
Q ss_pred EEecchhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+++..++..+. +++.++|||||.|++-.....
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 99988875443 589999999999999876543
No 173
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=2.9e-08 Score=87.93 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=103.9
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHH
Q psy7837 92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAM 170 (299)
Q Consensus 92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~ 170 (299)
.|..+-+|++..|.......=+ .+......+|.+|+|..||-|++++.+|+.|.. |+++|+||.+++.++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER---------~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTER---------ARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK 228 (341)
T ss_pred CCEEEEEchHHeEECCCchHHH---------HHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH
Confidence 5778888877766432211111 111223466999999999999999999999876 999999999999999
Q ss_pred HHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 171 KNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+|++.| .....+..+++|.....+..+.+|.|+++.+. +...+...+.+++||.+.+....+.
T Consensus 229 eNi~LN----~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 229 ENIRLN----KVEGRVEPILGDAREVAPELGVADRIIMGLPKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred HHHHhc----CccceeeEEeccHHHhhhccccCCEEEeCCCCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 999995 34455999999998765554789999999875 5677889999999999998876554
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.80 E-value=2.2e-09 Score=88.15 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~ 207 (299)
.+-.++||+|||||..+..+..+..+.+++|+|.+|++.|.++ ...+. +.++|..... ....+||+|.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK--------g~YD~--L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK--------GLYDT--LYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc--------cchHH--HHHHHHHHHhhhccCCcccchh
Confidence 3457999999999999999999999999999999999999876 22221 2233333222 2347899999
Q ss_pred ecchhh------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 208 ISQAIR------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 208 ~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+..++. .+.......|+|||.+.+++..-.
T Consensus 194 AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~ 229 (287)
T COG4976 194 AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLP 229 (287)
T ss_pred hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccC
Confidence 888764 344578899999999999986544
No 175
>PRK04148 hypothetical protein; Provisional
Probab=98.79 E-value=2e-07 Score=71.55 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCCcH-HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEE
Q psy7837 130 VYGSKVLDIGSGSGY-LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIY 207 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~-~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~ 207 (299)
.++.+++|+|||+|. ++..+++.|.+|+++|+++..++.++++ .++++.+|......+ -..+|+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHHHhcCCEEE
Confidence 456899999999996 8889999999999999999998888765 467889998864433 25699999
Q ss_pred ecchhhhHHHHHHHhccC-CcEEEEEec
Q psy7837 208 ISQAIRDIPWHIVDQLKL-GGRMLFIKG 234 (299)
Q Consensus 208 ~~~~~~~~~~~~~~~L~~-gG~lv~~~~ 234 (299)
+..+...+...+.++-+. |.-+++...
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 998888777766655544 555555543
No 176
>KOG3191|consensus
Probab=98.79 E-value=8.2e-08 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
..-++|||||||..+..+++. +.-+.++|+|+.+++..++.++. ...++..++.|....... ++.|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~------n~~~~~~V~tdl~~~l~~-~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC------NRVHIDVVRTDLLSGLRN-ESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh------cCCccceeehhHHhhhcc-CCccEEEE
Confidence 678999999999999999887 34599999999999998888876 345688999998876655 88999999
Q ss_pred cchhh---------------------------hHHHHHHHhccCCcEEEEEecCCCCcc
Q psy7837 209 SQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGHEDDIM 240 (299)
Q Consensus 209 ~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~~~~~~ 240 (299)
+.+.. .+++.+-..|.|.|.+++.....+..+
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 88641 122345678889999999887666544
No 177
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.75 E-value=9.4e-08 Score=80.50 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=84.6
Q ss_pred CeEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC---CCCCCCCeeEEE
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR---GYPDAAPYDVIY 207 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~v~ 207 (299)
..+||||||.|.+...+|+... .++|+|+....+..+.+.+.. ....|+.+++.|+.. ...+.++.|.|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~-----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE-----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH-----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 5899999999999999999864 599999999999999888877 455599999999884 344556899999
Q ss_pred ecchhh--------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837 208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
++.+-+ ...+.+.+.|++||.|.+.+......
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 988743 34568999999999999998766543
No 178
>KOG3420|consensus
Probab=98.75 E-value=2.5e-08 Score=76.17 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=68.6
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
.-..|++++|+|||+|.++...+-.+.+ |+|+|+++++++.+++|++. ...++++.++|+....+..+.||.+
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE------fEvqidlLqcdildle~~~g~fDta 118 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE------FEVQIDLLQCDILDLELKGGIFDTA 118 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH------hhhhhheeeeeccchhccCCeEeeE
Confidence 3457999999999999999888777665 99999999999999999887 4567799999999877777889999
Q ss_pred Eecchh
Q psy7837 207 YISQAI 212 (299)
Q Consensus 207 ~~~~~~ 212 (299)
+++.++
T Consensus 119 viNppF 124 (185)
T KOG3420|consen 119 VINPPF 124 (185)
T ss_pred EecCCC
Confidence 999986
No 179
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.74 E-value=7e-08 Score=85.40 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCC---CC-CCCCCe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRR---GY-PDAAPY 203 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~-~~~~~f 203 (299)
++.++||||||+|.+...++.. +++++++|+++.+++.|++|++.+. ....++.+... |... .. ...+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np---~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP---GLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc---CCcCcEEEEEccchhhhhhcccccCCce
Confidence 4679999999999877776654 7899999999999999999999841 13456777643 3222 11 134689
Q ss_pred eEEEecchhhh
Q psy7837 204 DVIYISQAIRD 214 (299)
Q Consensus 204 D~v~~~~~~~~ 214 (299)
|+|+||+++..
T Consensus 191 DlivcNPPf~~ 201 (321)
T PRK11727 191 DATLCNPPFHA 201 (321)
T ss_pred EEEEeCCCCcC
Confidence 99999999853
No 180
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.8e-07 Score=82.44 Aligned_cols=110 Identities=24% Similarity=0.318 Sum_probs=86.0
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCC
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGS 142 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~ 142 (299)
..+||++|||++++.|.-|..+++.+..+| .|+++|+++.-+...++++.+
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R---------------------------- 204 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR---------------------------- 204 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH----------------------------
Confidence 489999999999999999999999987754 458888888888888888777
Q ss_pred cHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCCCCCeeEEEecchhh------
Q psy7837 143 GYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPDAAPYDVIYISQAIR------ 213 (299)
Q Consensus 143 G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~~~~~~~------ 213 (299)
.+..|+..+..|.... .....+||.|+++++..
T Consensus 205 --------------------------------------lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ir 246 (355)
T COG0144 205 --------------------------------------LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIR 246 (355)
T ss_pred --------------------------------------cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccc
Confidence 4667788888887642 22223699999998742
Q ss_pred ----------------------hHHHHHHHhccCCcEEEEEecCCCCc
Q psy7837 214 ----------------------DIPWHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 214 ----------------------~~~~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
.+.+...+.|||||.|+.++-+....
T Consensus 247 r~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 247 RDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 23357889999999999997654443
No 181
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.72 E-value=6.4e-08 Score=88.07 Aligned_cols=96 Identities=22% Similarity=0.164 Sum_probs=77.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
+.+|||++||+|.+++.++.. + ..|+++|+++.+++.+++|++.| ...++++..+|+.........||+|+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N-----~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN-----GLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 468999999999999999865 4 37999999999999999999884 4567789999987533213569999998
Q ss_pred chh--hhHHHHHHHhccCCcEEEEE
Q psy7837 210 QAI--RDIPWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 210 ~~~--~~~~~~~~~~L~~gG~lv~~ 232 (299)
+.- ..+.+...+.+++||.++++
T Consensus 133 P~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 PFGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 742 23445667778999999998
No 182
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.69 E-value=2.1e-07 Score=82.97 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCc-----ccCCCCeEEEEcCCCCC-----CCC
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPA-----IALAENFEFVCADGRRG-----YPD 199 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~-----~~~ 199 (299)
++.+|||+|||-|.-..-+...+. .++|+|++...++.|+++.+..... ....-...++.+|.... +..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 789999999999998888777764 5999999999999999998321000 01123567888887631 222
Q ss_pred -CCCeeEEEecchhhh----------HHHHHHHhccCCcEEEEEecCCC
Q psy7837 200 -AAPYDVIYISQAIRD----------IPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 200 -~~~fD~v~~~~~~~~----------~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
...||+|-|...+|. +...+...|+|||+++..++...
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 258999999988763 45689999999999999988654
No 183
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.68 E-value=3.3e-07 Score=84.99 Aligned_cols=95 Identities=25% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcC------CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMG------AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD 204 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~------~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 204 (299)
++..|+|+|||+|.+....++.+ .+|+++|-++.+....++.+..+ +...+|+++.+|+.....+ .+.|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n----~w~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN----GWGDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT----TTTTTEEEEES-TTTSCHS-S-EE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc----CCCCeEEEEeCcccCCCCC-Ccee
Confidence 46789999999999998776664 47999999999998887775553 4668999999999975444 5899
Q ss_pred EEEecch--------hhhHHHHHHHhccCCcEEE
Q psy7837 205 VIYISQA--------IRDIPWHIVDQLKLGGRML 230 (299)
Q Consensus 205 ~v~~~~~--------~~~~~~~~~~~L~~gG~lv 230 (299)
+|++-.. .....+...+.|||||+++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9987321 2334467788999998654
No 184
>KOG1500|consensus
Probab=98.67 E-value=1.6e-07 Score=81.36 Aligned_cols=105 Identities=29% Similarity=0.246 Sum_probs=82.0
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 201 (299)
+-....-..++.|||+|||+|.++...++.|++ |+++|.| +|.+.|++.++.| +..+++.++.|-+.+...+ +
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N----~~~~rItVI~GKiEdieLP-E 242 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASN----NLADRITVIPGKIEDIELP-E 242 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcC----CccceEEEccCccccccCc-h
Confidence 333444578999999999999999999999876 9999986 5788898888876 6778999999988864443 5
Q ss_pred CeeEEEecchh-----hhHHH---HHHHhccCCcEEEEEe
Q psy7837 202 PYDVIYISQAI-----RDIPW---HIVDQLKLGGRMLFIK 233 (299)
Q Consensus 202 ~fD~v~~~~~~-----~~~~~---~~~~~L~~gG~lv~~~ 233 (299)
+.|+++.-+.- +.+.+ ...+.|+|.|.++=.+
T Consensus 243 k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 243 KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 79999986642 22333 4668999999887544
No 185
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.67 E-value=6.3e-07 Score=76.84 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=75.0
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA 200 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 200 (299)
+.......+..+|+|||+|+|.++..+++. +.+++..|. |..++.+++ ..+++++.+|+....+.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----------~~rv~~~~gd~f~~~P~- 158 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----------ADRVEFVPGDFFDPLPV- 158 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----------TTTEEEEES-TTTCCSS-
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----------ccccccccccHHhhhcc-
Confidence 333444556679999999999999999877 678999998 777777766 25899999999854443
Q ss_pred CCeeEEEecchhhhH--------HHHHHHhccCC--cEEEEEec
Q psy7837 201 APYDVIYISQAIRDI--------PWHIVDQLKLG--GRMLFIKG 234 (299)
Q Consensus 201 ~~fD~v~~~~~~~~~--------~~~~~~~L~~g--G~lv~~~~ 234 (299)
+|++++..+++.. .+++.+.|+|| |+|+|...
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9999999998754 35789999999 99999754
No 186
>KOG0820|consensus
Probab=98.66 E-value=2.2e-07 Score=78.39 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=73.5
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA 200 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 200 (299)
+.|..-+.+++.+.|||+|.|||.+|..+...|..|+++|+++.|+....++.+.. ......+++++|......
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt----p~~~kLqV~~gD~lK~d~-- 121 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT----PKSGKLQVLHGDFLKTDL-- 121 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC----CccceeeEEecccccCCC--
Confidence 44666678899999999999999999999999999999999999999999998774 345789999999886443
Q ss_pred CCeeEEEecchh
Q psy7837 201 APYDVIYISQAI 212 (299)
Q Consensus 201 ~~fD~v~~~~~~ 212 (299)
..||.++.+.+.
T Consensus 122 P~fd~cVsNlPy 133 (315)
T KOG0820|consen 122 PRFDGCVSNLPY 133 (315)
T ss_pred cccceeeccCCc
Confidence 349999997764
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=3.3e-07 Score=78.23 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=77.4
Q ss_pred HHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD 199 (299)
Q Consensus 120 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 199 (299)
.+.|-..+...++..|||||+|.|.+|..+++.+.+|+++|+++.++...++.+. ...|++++++|+......
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-------~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-------PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc-------cccceEEEeCchhcCcch
Confidence 4445556677789999999999999999999999999999999999999998864 257999999999865443
Q ss_pred CC-CeeEEEecchhhhHHHHHHHhccC
Q psy7837 200 AA-PYDVIYISQAIRDIPWHIVDQLKL 225 (299)
Q Consensus 200 ~~-~fD~v~~~~~~~~~~~~~~~~L~~ 225 (299)
.- .++.|+.|-+..-..+-+.++|+.
T Consensus 92 ~l~~~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 92 SLAQPYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred hhcCCCEEEEcCCCcccHHHHHHHHhc
Confidence 21 589999988865444434444433
No 188
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.62 E-value=3.3e-07 Score=77.49 Aligned_cols=89 Identities=25% Similarity=0.334 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
...++||||+|.|..+..++..-.+|+++|.|+.|....+++ +.+++..|-. .....+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k------------g~~vl~~~~w--~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK------------GFTVLDIDDW--QQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC------------CCeEEehhhh--hccCCceEEEeehh
Confidence 467899999999999999999999999999999998877653 3333333221 12235799999999
Q ss_pred hhh------hHHHHHHHhccCCcEEEEEe
Q psy7837 211 AIR------DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 211 ~~~------~~~~~~~~~L~~gG~lv~~~ 233 (299)
++. .+.+.+++.|+|+|++++..
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 985 35579999999999999864
No 189
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.61 E-value=5.8e-08 Score=77.19 Aligned_cols=76 Identities=26% Similarity=0.297 Sum_probs=56.4
Q ss_pred CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC---CCCeeEEEec
Q psy7837 133 SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD---AAPYDVIYIS 209 (299)
Q Consensus 133 ~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~ 209 (299)
..|+|+.||.|..++.+|+....|+++|+++..++.++.|++.+ +...++.++++|....... ...+|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vY----Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVY----GVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHT----T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHc----CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 36999999999999999999999999999999999999999985 3467999999998853221 1228999998
Q ss_pred chh
Q psy7837 210 QAI 212 (299)
Q Consensus 210 ~~~ 212 (299)
+++
T Consensus 77 PPW 79 (163)
T PF09445_consen 77 PPW 79 (163)
T ss_dssp --B
T ss_pred CCC
Confidence 874
No 190
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.61 E-value=7.9e-07 Score=72.62 Aligned_cols=113 Identities=24% Similarity=0.271 Sum_probs=87.1
Q ss_pred HHHHHHhhhcccCCCC-eEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837 118 TYIKRINFYGHLVYGS-KVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 194 (299)
.+.+.+.....+.... +++|+|+|.|.-++.++-. ..+++.+|.+..-+...+..... .+..|++++++.+.
T Consensus 34 Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~-----L~L~nv~v~~~R~E 108 (184)
T PF02527_consen 34 HILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE-----LGLSNVEVINGRAE 108 (184)
T ss_dssp HHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----HT-SSEEEEES-HH
T ss_pred HHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH-----hCCCCEEEEEeeec
Confidence 4455555566655554 8999999999999888654 67899999999998888888777 57789999999988
Q ss_pred CCCCCCCCeeEEEecchh--hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 195 RGYPDAAPYDVIYISQAI--RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 195 ~~~~~~~~fD~v~~~~~~--~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
. .....+||+|++.++. ..+.+-+...|++||.+++.-+..
T Consensus 109 ~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 109 E-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp H-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred c-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 8 3344789999998864 456678889999999999987754
No 191
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.60 E-value=7.9e-07 Score=79.46 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=102.6
Q ss_pred ceEEEEeCCHHHHHH-HHHHHHH---hHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCC--------------
Q psy7837 93 GKVYTIEHIPELLEA-ARKRVKA---KAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-------------- 154 (299)
Q Consensus 93 g~v~~~d~~~~~~~~-a~~~l~~---~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-------------- 154 (299)
...+++|.+.+-+.. .-+.... .-+.+...|..++.-.++..++|.-||+|.+.++.|.++.
T Consensus 149 ~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~ 228 (381)
T COG0116 149 TATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEF 228 (381)
T ss_pred EEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhh
Confidence 345677766653321 1111111 1245666788888888899999999999999999887764
Q ss_pred ---------------------------eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 155 ---------------------------KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 155 ---------------------------~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
.++|+|+++.+++.|+.|++.. +..+.++|.++|+.....+.+.+|+|+
T Consensus 229 w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A----Gv~d~I~f~~~d~~~l~~~~~~~gvvI 304 (381)
T COG0116 229 WDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA----GVGDLIEFKQADATDLKEPLEEYGVVI 304 (381)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc----CCCceEEEEEcchhhCCCCCCcCCEEE
Confidence 2779999999999999999985 677899999999987554436799999
Q ss_pred ecchhh--------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 208 ISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 208 ~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+|++.- .+.+.+.+.++.-+..+++....
T Consensus 305 ~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 305 SNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred eCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 999851 22245667777777888776544
No 192
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.59 E-value=1.9e-07 Score=74.94 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=61.3
Q ss_pred EEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhH------HHHHHHhccCCcEEE
Q psy7837 157 YAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDI------PWHIVDQLKLGGRML 230 (299)
Q Consensus 157 ~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~------~~~~~~~L~~gG~lv 230 (299)
+|+|+|++|++.|+++.+..+. ....+++++++|+.+.+...++||+|++..+++++ .++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 4899999999999877653100 12357999999998876666799999999887653 468999999999999
Q ss_pred EEecCC
Q psy7837 231 FIKGHE 236 (299)
Q Consensus 231 ~~~~~~ 236 (299)
+.....
T Consensus 79 i~d~~~ 84 (160)
T PLN02232 79 ILDFNK 84 (160)
T ss_pred EEECCC
Confidence 876543
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.59 E-value=5.1e-07 Score=78.53 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=86.6
Q ss_pred hhhcccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC-
Q psy7837 124 NFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA- 200 (299)
Q Consensus 124 ~~~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~- 200 (299)
...++..+ ++||-||.|.|..+..+.+.. .+++.+|+++..++.+++-+...... ....+++++..|+.......
T Consensus 70 ~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 70 PLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-ADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-cCCCceEEEeccHHHHHHhCC
Confidence 33444555 699999999999999999996 57999999999999999988762111 11579999999988644322
Q ss_pred CCeeEEEecchhh----------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 201 APYDVIYISQAIR----------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 201 ~~fD~v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.+||+|+++..-. .+.+.+.+.|+++|+++.....+
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 3799999987532 45578999999999999995543
No 194
>PLN02823 spermine synthase
Probab=98.57 E-value=4.2e-07 Score=81.17 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC-CCCCeeEEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP-DAAPYDVIY 207 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~ 207 (299)
..++||.+|+|.|..+..+.+. ..+++.+|+++.+++.+++.+..+... ....+++++.+|+..... ..++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~-~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA-FCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc-ccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4579999999999999988876 356999999999999999987642111 235789999999886432 236799999
Q ss_pred ecchh------------hhHHH-HHHHhccCCcEEEEEecC
Q psy7837 208 ISQAI------------RDIPW-HIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 208 ~~~~~------------~~~~~-~~~~~L~~gG~lv~~~~~ 235 (299)
++..- ....+ .+.+.|+|||++++....
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 98421 12344 678899999999987654
No 195
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.57 E-value=8.1e-07 Score=72.97 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=76.9
Q ss_pred HHHHHHHhccCCCCCE-EEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCC
Q psy7837 55 CLVLELLSGHLKYGDK-VLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~-vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 133 (299)
..+++.|...+..... |||||||+|..+.++++.+.. -+-.-.|.++......+..+...
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~------------------ 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEA------------------ 72 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhc------------------
Confidence 4566666665665555 999999999999999998863 44556777777766666655541
Q ss_pred eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-CC-------CCCCeeE
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-YP-------DAAPYDV 205 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~-------~~~~fD~ 205 (299)
....-...+..|+... ++ ...+||.
T Consensus 73 -----------------------------------------------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 73 -----------------------------------------------GLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred -----------------------------------------------CCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 1111112233444432 11 2368999
Q ss_pred EEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIRD--------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 234 (299)
|++.++++- +...+.++|++||.|++.-+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 999998763 44678899999999999754
No 196
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.55 E-value=2.3e-06 Score=81.03 Aligned_cols=103 Identities=22% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVI 206 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v 206 (299)
.+..+||||||.|.++..+|... ..++|+|++...+..+.+.+.. ....|+.++..|+.. ...+.+++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~-----~~l~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE-----QNITNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH-----cCCCeEEEEcCCHHHHHHhcCcccccEE
Confidence 46789999999999999999885 5699999999988888887766 467899988888652 23345789999
Q ss_pred Eecchhh--------------hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837 207 YISQAIR--------------DIPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 207 ~~~~~~~--------------~~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
+++.+-+ ...+.+.+.|+|||.+.+.+.....
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 9988743 3446899999999999998876543
No 197
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.7e-07 Score=81.44 Aligned_cols=42 Identities=36% Similarity=0.482 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHH
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK 171 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~ 171 (299)
.++++|||+|||||.+++..++.|+. |+++|+++.+++.+++
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH
Confidence 36999999999999999999999986 9999999999999876
No 198
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.54 E-value=2.2e-07 Score=81.38 Aligned_cols=59 Identities=37% Similarity=0.487 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.+++.|....++|.+|||+|||||.++...++... .+|+++|+++..++.++++...
T Consensus 148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHH
Confidence 4777888888889999999999999999998887643 5899999999999999999876
No 199
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.53 E-value=1.9e-06 Score=71.31 Aligned_cols=115 Identities=25% Similarity=0.269 Sum_probs=81.5
Q ss_pred chHHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccC
Q psy7837 52 SDHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLV 130 (299)
Q Consensus 52 ~~~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 130 (299)
.+.+.++.-+. -.+++|.+||-+|+++|..-..++..++++|.||+++++++..+.-.....+
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---------------- 120 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---------------- 120 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------------
Confidence 44455554443 3479999999999999999999999999999999999999876544433332
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIY 207 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~ 207 (299)
..|+-.+..|+..+.. --+..|+|+
T Consensus 121 ----------------------------------------------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 121 ----------------------------------------------------RPNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp ----------------------------------------------------STTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred ----------------------------------------------------CCceeeeeccCCChHHhhcccccccEEE
Confidence 4689999999985321 125799999
Q ss_pred ecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837 208 ISQAIR----DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 208 ~~~~~~----~~~~~~~~~L~~gG~lv~~~~ 234 (299)
++-.-. -+..++...||+||.+++...
T Consensus 149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 149 QDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 986543 344678889999999998864
No 200
>PRK00536 speE spermidine synthase; Provisional
Probab=98.53 E-value=9.7e-07 Score=75.90 Aligned_cols=104 Identities=14% Similarity=0.004 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
...++||-+|.|.|....++.+...+|+.+|+++.+++.+++-+..... .....+++++.. ... ...++||+|+++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHE-VKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 3468999999999999999999977999999999999999996554211 134567777752 111 112679999999
Q ss_pred chh-hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 210 QAI-RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 210 ~~~-~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
... ....+.+.+.|+|||+++....++.
T Consensus 147 s~~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred CCCChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 544 4566789999999999999876554
No 201
>KOG2187|consensus
Probab=98.50 E-value=5.5e-07 Score=82.43 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=92.4
Q ss_pred hHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837 115 KAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194 (299)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 194 (299)
.++.+++.+...+.+..+..++|+.||||.+++.+++...+|+|+|+++..++.|+.|++. ++..|.+|+++-+.
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~-----NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQI-----NGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchh-----cCccceeeeecchh
Confidence 4678889999999999999999999999999999999999999999999999999999999 58899999999555
Q ss_pred CCCC---CC--CCee-EEEecchhhh----HHHHHHHhccCCcEEEEEecCCC
Q psy7837 195 RGYP---DA--APYD-VIYISQAIRD----IPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 195 ~~~~---~~--~~fD-~v~~~~~~~~----~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+... .. ++=+ +++++.+-.. +...+.+.-++--.+++++..+.
T Consensus 442 ~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 442 DLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 4222 11 2345 5666665432 23344444447778888887664
No 202
>KOG1975|consensus
Probab=98.50 E-value=6.2e-07 Score=77.46 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=82.6
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcC-CcccCCCCeEEEEcCCCC-----CC-C
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGA-PAIALAENFEFVCADGRR-----GY-P 198 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~-----~~-~ 198 (299)
....++..++|+|||-|.-.+-+-+.|.. ++++|+.+..++.|+++.+..- ......-.+.|+.+|... .. +
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34577899999999999999888888865 9999999999999999876520 000011247889998762 12 2
Q ss_pred CCCCeeEEEecchhh----------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 199 DAAPYDVIYISQAIR----------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 199 ~~~~fD~v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
...+||+|=|..++| .+..++.+.|+|||.++-.+|...
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 223499998887764 244688999999999999887654
No 203
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.49 E-value=4.4e-07 Score=74.95 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=64.4
Q ss_pred CCCeEEEEcCCCcH----HHHHHHH-----cC--CeEEEEeCChHHHHHHHHHH--------------HhcC-Cccc---
Q psy7837 131 YGSKVLDIGSGSGY----LSALFAY-----MG--AKVYAIEHVKNLCKRAMKNI--------------RRGA-PAIA--- 181 (299)
Q Consensus 131 ~~~~vLDiG~G~G~----~~~~la~-----~~--~~v~~~D~~~~~~~~a~~~~--------------~~~~-~~~~--- 181 (299)
+.-+|+..||++|. +++.+.. .+ .+++|+|+|+.+++.|++-. +++- ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999994 3333333 12 47999999999999998632 1100 0000
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--------hHHHHHHHhccCCcEEEEEecC
Q psy7837 182 -----LAENFEFVCADGRRGYPDAAPYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 182 -----~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
...++.|...|..+..+..+.||+|+|.+++. .+.+.+++.|+|||.|++....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 12578999999888444457899999999974 4557899999999999997654
No 204
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.47 E-value=1.5e-06 Score=75.90 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=89.0
Q ss_pred ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCH----HHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHHHh
Q psy7837 43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGY----LTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~----~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
....+...|.....+.+.+... .+.-+|+.+||++|. +++.+.+..+. +-+++|.|++...++.|++.....
T Consensus 92 neT~FFRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~ 170 (287)
T PRK10611 92 NLTAFFREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQ 170 (287)
T ss_pred CCCCccCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCH
Confidence 3344555555555555544322 223689999999994 34444443322 357999999999999999886441
Q ss_pred HHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC
Q psy7837 116 AETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192 (299)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 192 (299)
..+.. +.. ......+.+.+ ...+- +.+ .....+.|...|
T Consensus 171 -~~~r~-~p~-----------------~~~~ryF~~~~~~~~~~~~--v~~-----------------~lr~~V~F~~~N 212 (287)
T PRK10611 171 -EELKT-LSP-----------------QQLQRYFMRGTGPHEGLVR--VRQ-----------------ELANYVDFQQLN 212 (287)
T ss_pred -HHHhc-CCH-----------------HHHHHHcccccCCCCceEE--ECh-----------------HHHccCEEEccc
Confidence 00000 000 00000000000 00000 001 123578999999
Q ss_pred CCCC-CCCCCCeeEEEecchhhh--------HHHHHHHhccCCcEEEEEec
Q psy7837 193 GRRG-YPDAAPYDVIYISQAIRD--------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 193 ~~~~-~~~~~~fD~v~~~~~~~~--------~~~~~~~~L~~gG~lv~~~~ 234 (299)
.... ++..+.||+|+|.+++.. +.+.+.+.|+|||.|++...
T Consensus 213 L~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 213 LLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred CCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 8863 333478999999888743 44689999999999887654
No 205
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.45 E-value=5.5e-07 Score=67.38 Aligned_cols=47 Identities=32% Similarity=0.605 Sum_probs=41.7
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
||.+|||+|||+|.++..+++... ..+++++|+++.+++.++++...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~ 47 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAE 47 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999999999999443 46899999999999999999843
No 206
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=9.3e-07 Score=76.27 Aligned_cols=51 Identities=31% Similarity=0.230 Sum_probs=46.1
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHH
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~ 173 (299)
+....++.+|++|||||||.|.+++.+|+. +.+|+|+++|+++.+.+++++
T Consensus 64 ~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~ 115 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI 115 (283)
T ss_pred HHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH
Confidence 445668899999999999999999999987 899999999999999998873
No 207
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.44 E-value=8.3e-07 Score=80.45 Aligned_cols=97 Identities=19% Similarity=0.124 Sum_probs=79.4
Q ss_pred CCeEEEEcCCCcHHHHHHHHc--CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEE
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM--GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIY 207 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~--~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~ 207 (299)
+-+|||+.||+|..++.+++. |. .|+++|+++.+++.+++|++.| ...+++++++|+...... ...||+|+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N-----~~~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN-----SVENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCcEEEEchhHHHHHHHhCCCCCEEE
Confidence 358999999999999999987 54 6999999999999999999884 455788999998754322 25699999
Q ss_pred ecchhh--hHHHHHHHhccCCcEEEEEe
Q psy7837 208 ISQAIR--DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 208 ~~~~~~--~~~~~~~~~L~~gG~lv~~~ 233 (299)
+++.-. .+.+.+.+.+++||.|++..
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 988322 46678889999999999983
No 208
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.43 E-value=4.2e-07 Score=83.29 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=75.3
Q ss_pred hHHHHHHHHhhhccc--CCC--CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEE
Q psy7837 115 KAETYIKRINFYGHL--VYG--SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190 (299)
Q Consensus 115 ~~~~~~~~~~~~~~~--~~~--~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 190 (299)
++.+|++.|..+... ..+ ..+||+|||+|+++..+..++..+.++-.....-...+-.+++ +...-+. +.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~-~~ 170 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIG-VL 170 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhh-hh
Confidence 445555555555544 333 4799999999999999999998877776654433333333333 2211111 11
Q ss_pred cCCCCCCCCCCCeeEEEecchhhhHH-------HHHHHhccCCcEEEEEecCCC
Q psy7837 191 ADGRRGYPDAAPYDVIYISQAIRDIP-------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 191 ~d~~~~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+ ....+.+.+.||+|.|..++.... -++-|+|+|||.++++.++..
T Consensus 171 ~-s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 G-SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred c-cccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 1 123455568999999988764322 378999999999999988755
No 209
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.43 E-value=4.3e-07 Score=79.01 Aligned_cols=84 Identities=29% Similarity=0.346 Sum_probs=51.6
Q ss_pred cccCCCCCCcccccccccccccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837 23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102 (299)
Q Consensus 23 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~ 102 (299)
|..+.+.|.+..|.+....+...|. +....+++.+. +++|++|||||||.|.++..+++..| .+|+|+.+++
T Consensus 24 ~Ld~~m~YS~~~~~~~~~~Le~AQ~----~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~ 95 (273)
T PF02353_consen 24 FLDPTMKYSCAYFDEGDDTLEEAQE----RKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSE 95 (273)
T ss_dssp TS-TT---S----SSTT--HHHHHH----HHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-H
T ss_pred hcCCCCCCCCeecCCchhhHHHHHH----HHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCH
Confidence 4454566777777775555554441 22344444444 89999999999999999999999874 4899999999
Q ss_pred HHHHHHHHHHHH
Q psy7837 103 ELLEAARKRVKA 114 (299)
Q Consensus 103 ~~~~~a~~~l~~ 114 (299)
...+.+++.+.+
T Consensus 96 ~Q~~~a~~~~~~ 107 (273)
T PF02353_consen 96 EQAEYARERIRE 107 (273)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=3.3e-06 Score=83.15 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHHHHhhhccc-CCCCeEEEEcCCCcHHHHHHHHc-------------------------------------------
Q psy7837 117 ETYIKRINFYGHL-VYGSKVLDIGSGSGYLSALFAYM------------------------------------------- 152 (299)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~------------------------------------------- 152 (299)
+.+...+..++.. .++..++|.+||+|.+.++.+..
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 3555556566665 56889999999999999987652
Q ss_pred -CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEecchhh----------hHHHHH
Q psy7837 153 -GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYISQAIR----------DIPWHI 219 (299)
Q Consensus 153 -~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~~~----------~~~~~~ 219 (299)
...++|+|+++.+++.|++|+..+ +....+.+.++|+...... .++||+|++|+++- .+...+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~----g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRA----GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL 330 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHc----CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence 125899999999999999999984 3445789999998764322 25799999998862 121222
Q ss_pred ---HHhccCCcEEEEEecCCC
Q psy7837 220 ---VDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 220 ---~~~L~~gG~lv~~~~~~~ 237 (299)
.+...+|+.+++.++...
T Consensus 331 g~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 331 GRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHhCCCCeEEEEeCCHH
Confidence 333348999988877654
No 211
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.41 E-value=1e-06 Score=72.79 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCcHHHHHHH-HcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 131 YGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la-~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
...++||.|+|-|+.+..+. .....|-.+|.++..++.|++.+.. ......++.+....+..++.++||+|++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-----~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-----DNPRVGEFYCVGLQDFTPEEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-----GGCCEEEEEES-GGG----TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-----cCCCcceEEecCHhhccCCCCcEeEEEeh
Confidence 45799999999999998664 5566799999999999999987644 23345667777666655666799999998
Q ss_pred chhhhHH--------HHHHHhccCCcEEEEEecCCC
Q psy7837 210 QAIRDIP--------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 210 ~~~~~~~--------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
-++-++. .++...|+|+|.+++-.+...
T Consensus 130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~ 165 (218)
T PF05891_consen 130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSS 165 (218)
T ss_dssp S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCC
Confidence 8775443 588999999999999866543
No 212
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.41 E-value=1.7e-06 Score=74.56 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=82.5
Q ss_pred CCEEEEEccCCC----HHHHHHHHHhCC----CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEc
Q psy7837 68 GDKVLEIGTGSG----YLTTLFGAMVGI----SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIG 139 (299)
Q Consensus 68 g~~vldiG~G~G----~~~~~la~~~~~----~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG 139 (299)
.-+|+.+||++| .+++.+.+..+. .-+++|.|++...++.|+.......+..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~-------------------- 156 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELL-------------------- 156 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhh--------------------
Confidence 458899999999 455556666643 5689999999999999987764410000
Q ss_pred CCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCc-----ccCCCCeEEEEcCCCCCCCCCCCeeEEEecchh--
Q psy7837 140 SGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA-----IALAENFEFVCADGRRGYPDAAPYDVIYISQAI-- 212 (299)
Q Consensus 140 ~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~-- 212 (299)
.+++++..+ +-+.+.+.+ ......|.|...|.....+..+.||+|+|.+++
T Consensus 157 -------------------~~~~~~~~~---ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIY 214 (268)
T COG1352 157 -------------------RGLPPELLR---RYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIY 214 (268)
T ss_pred -------------------ccCCHHHHh---hhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEe
Confidence 001111110 000000000 013357899999988655344779999999987
Q ss_pred ------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 213 ------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 213 ------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
..+.+.++..|+|||.|++-....
T Consensus 215 Fd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 215 FDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred eCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 356678999999999999976543
No 213
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.40 E-value=3.4e-06 Score=72.42 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CC-CeeEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AA-PYDVI 206 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~fD~v 206 (299)
..++||-||.|.|..+..+.+.. .+++.+|+++..++.+++-+...... ....+++++.+|+...... .+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 58899999999999999999885 67999999999999999977642110 2346999999998743221 13 79999
Q ss_pred Eecchh----------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 207 YISQAI----------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 207 ~~~~~~----------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+++..- ....+.+.+.|+|||.+++......
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 987653 2455789999999999999875443
No 214
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.40 E-value=1.3e-06 Score=76.47 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
..+|+.|||+++++|.-|..+++.+...|.+++.|++..-+...++++.+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r------------------------------ 132 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR------------------------------ 132 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH------------------------------
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh------------------------------
Confidence 88999999999999999999999999889999999999888888888877
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEEEecchhh---------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVIYISQAIR--------- 213 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~~~--------- 213 (299)
.+..++.....|..... .....||.|+++++..
T Consensus 133 ------------------------------------~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p 176 (283)
T PF01189_consen 133 ------------------------------------LGVFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNP 176 (283)
T ss_dssp ------------------------------------TT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCT
T ss_pred ------------------------------------cCCceEEEEeeccccccccccccccchhhcCCCccchhhhhhcc
Confidence 46667777777766431 1223599999988631
Q ss_pred -------------------hHHHHHHHhc----cCCcEEEEEecC
Q psy7837 214 -------------------DIPWHIVDQL----KLGGRMLFIKGH 235 (299)
Q Consensus 214 -------------------~~~~~~~~~L----~~gG~lv~~~~~ 235 (299)
.+.+.+.+.+ +|||+++.++-+
T Consensus 177 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 177 DIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp THHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred chhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 2335788899 999999998754
No 215
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.40 E-value=1.2e-05 Score=69.43 Aligned_cols=59 Identities=34% Similarity=0.490 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
...+++.+...+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHH
Confidence 35567777666789999999999999999877654 43 4699999999999999998876
No 216
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.39 E-value=8.7e-07 Score=77.54 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=53.0
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
|=+...+++.|. +++|..++|++||.|..|..+++.+++.++|+|+|.++.+++.+++.+.
T Consensus 5 pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 5 PVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred cccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 345567777776 7899999999999999999999999878999999999999999987663
No 217
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.38 E-value=1.4e-06 Score=69.23 Aligned_cols=49 Identities=29% Similarity=0.483 Sum_probs=43.9
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+.+|||+|||+|.++..+++..++.++++++|+++.+++.++..+..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc
Confidence 4678999999999999999998777788999999999999999998876
No 218
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.37 E-value=2.7e-06 Score=69.66 Aligned_cols=94 Identities=18% Similarity=0.143 Sum_probs=59.9
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP 202 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 202 (299)
|..+....+...|.|+|||.+.++..+ ..+..|...|+.. .+-.++.+|+...+.+.++
T Consensus 64 I~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva--------------------~n~~Vtacdia~vPL~~~s 122 (219)
T PF05148_consen 64 IEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA--------------------PNPRVTACDIANVPLEDES 122 (219)
T ss_dssp HHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS---------------------SSTTEEES-TTS-S--TT-
T ss_pred HHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccC--------------------CCCCEEEecCccCcCCCCc
Confidence 344444555679999999999998554 3456799999743 3445788999887778899
Q ss_pred eeEEEecchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 203 YDVIYISQAI-----RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 203 fD~v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.|++++-..+ .....++.|+||+||.|.|.....+
T Consensus 123 vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR 162 (219)
T PF05148_consen 123 VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR 162 (219)
T ss_dssp EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc
Confidence 9999875554 4566899999999999999865543
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.36 E-value=2.1e-06 Score=69.25 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=83.7
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD 199 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 199 (299)
..+......-.+++|||+|+|+|..++..++.|+. |++.|+.+.....++.|++.| ..++.+...|... .
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an------gv~i~~~~~d~~g---~ 139 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN------GVSILFTHADLIG---S 139 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc------cceeEEeeccccC---C
Confidence 34666667788999999999999999999999876 999999999999999998874 3677888877655 2
Q ss_pred CCCeeEEEecchhh------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 200 AAPYDVIYISQAIR------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 200 ~~~fD~v~~~~~~~------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
...||+++....+. .+.+ +...|+..|..++...+.+
T Consensus 140 ~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 140 PPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred CcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 35699999887652 2223 7777888887777665554
No 220
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.35 E-value=2.7e-06 Score=70.61 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=51.1
Q ss_pred cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++.+.....+++.+. +.++++|||+|||+|.++..+++.. +.++++++|+++.+++.+++++..
T Consensus 23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 333444445566664 7889999999999999999998654 458999999999999999998865
No 221
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.34 E-value=2.6e-06 Score=70.14 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=51.7
Q ss_pred cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++.+...+.+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++..
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 334444455556665 6789999999999999999998874 458999999999999999988765
No 222
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.7e-06 Score=71.23 Aligned_cols=48 Identities=38% Similarity=0.612 Sum_probs=44.0
Q ss_pred hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837 125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~ 172 (299)
....+.++.+|||||||||+.+..+++...+|+++|..+.+.+.|++|
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~ 113 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRN 113 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHH
Confidence 345678899999999999999999999988999999999999999876
No 223
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.30 E-value=5.7e-06 Score=73.69 Aligned_cols=110 Identities=22% Similarity=0.159 Sum_probs=73.9
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHH---------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAY---------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG 193 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~---------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 193 (299)
+..+....++.+|+|..||+|.+...+.+ ....++|+|+++.++..++-++.-.+ ....+..+..+|.
T Consensus 38 ~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~---~~~~~~~i~~~d~ 114 (311)
T PF02384_consen 38 MVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG---IDNSNINIIQGDS 114 (311)
T ss_dssp HHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---HHCBGCEEEES-T
T ss_pred HHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---ccccccccccccc
Confidence 33344556778999999999999988766 35679999999999999988775421 1233456888887
Q ss_pred CCCCCC--CCCeeEEEecchhh---------------------------hHHHHHHHhccCCcEEEEEecC
Q psy7837 194 RRGYPD--AAPYDVIYISQAIR---------------------------DIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 194 ~~~~~~--~~~fD~v~~~~~~~---------------------------~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
...... ...||+|++++++. .+...+.+.|++||++.+..+.
T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 643222 36899999998752 1224678999999998887764
No 224
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.28 E-value=7.4e-07 Score=78.89 Aligned_cols=159 Identities=19% Similarity=0.131 Sum_probs=112.4
Q ss_pred cCCCCCEEEE----EccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH------Hh-----HHHH-------HH
Q psy7837 64 HLKYGDKVLE----IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK------AK-----AETY-------IK 121 (299)
Q Consensus 64 ~~~~g~~vld----iG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~------~~-----~~~~-------~~ 121 (299)
.++.||+|.- .+||.+..|..-.+.++++.++++++.+-.+.+...-.-. .. +-++ ++
T Consensus 78 ~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~ 157 (339)
T COG1064 78 GLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157 (339)
T ss_pred cCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEee
Confidence 3788999854 6999999999888889988889999877766554322100 00 0011 12
Q ss_pred HHhhhcccCCCCeEEEEcCC-CcHHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCC
Q psy7837 122 RINFYGHLVYGSKVLDIGSG-SGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYP 198 (299)
Q Consensus 122 ~~~~~~~~~~~~~vLDiG~G-~G~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~ 198 (299)
.+. .....||++|+-+|+| .|..+.++++ +|++|+++|.+++-.+.|++.-.. .++.. |......
T Consensus 158 alk-~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~ 225 (339)
T COG1064 158 ALK-KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEA 225 (339)
T ss_pred ehh-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHH
Confidence 222 2577899999999998 5567777887 699999999999999999875211 12222 2111111
Q ss_pred CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837 199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
-.+.||+|+...+ ....+...+.|++||++++.-.+
T Consensus 226 ~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 226 VKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1123999999888 88889999999999999998665
No 225
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.26 E-value=3e-06 Score=73.94 Aligned_cols=64 Identities=25% Similarity=0.256 Sum_probs=53.4
Q ss_pred ccc-ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837 44 HNA-FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 44 ~~~-~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l 112 (299)
.|| ...++.+...+++.+. +.++++|||+|||+|.++..+++... +++++|+++.+++.+++++
T Consensus 20 ~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 20 LGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred cCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhh
Confidence 455 4456677778888775 78999999999999999999998853 7999999999999988765
No 226
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=8.9e-06 Score=66.87 Aligned_cols=39 Identities=23% Similarity=0.487 Sum_probs=35.6
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~ 102 (299)
-+++|..|+|+|+.+|.|++++++.+++.+.|+++|+.+
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 468999999999999999999999999988899999754
No 227
>KOG1122|consensus
Probab=98.23 E-value=1.3e-05 Score=71.94 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=84.8
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
.+||++|||.++.+|.-|.++|..+..+|.+++.|.+..-+.....++.+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r------------------------------ 288 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR------------------------------ 288 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH------------------------------
Confidence 68999999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC---CCCCCeeEEEecchhhh-------
Q psy7837 145 LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY---PDAAPYDVIYISQAIRD------- 214 (299)
Q Consensus 145 ~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~~~~------- 214 (299)
.+..+..+...|....+ .. ++||.|+.+++...
T Consensus 289 ------------------------------------lGv~ntiv~n~D~~ef~~~~~~-~~fDRVLLDAPCSGtgvi~K~ 331 (460)
T KOG1122|consen 289 ------------------------------------LGVTNTIVSNYDGREFPEKEFP-GSFDRVLLDAPCSGTGVISKD 331 (460)
T ss_pred ------------------------------------hCCCceEEEccCcccccccccC-cccceeeecCCCCCCcccccc
Confidence 35667777777776432 22 37999999887431
Q ss_pred ---------------------HHHHHHHhccCCcEEEEEecCCC
Q psy7837 215 ---------------------IPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 215 ---------------------~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+......++++||+||.++-+..
T Consensus 332 ~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 332 QSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 22356789999999999875543
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=1.1e-05 Score=67.23 Aligned_cols=96 Identities=26% Similarity=0.268 Sum_probs=77.7
Q ss_pred CCeEEEEcCCCcHHHHHHHH--cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCC-eeEEEe
Q psy7837 132 GSKVLDIGSGSGYLSALFAY--MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP-YDVIYI 208 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~--~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~ 208 (299)
+.+++|||+|.|.-++.++- ...+|+-+|....-+...+..... .+..|++++++.+...... .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~~~~~-~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEEFGQE-KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhhcccc-cccCcEEEe
Confidence 68999999999999998773 366699999998888888877777 6788999999998875433 23 999999
Q ss_pred cchh--hhHHHHHHHhccCCcEEEEEe
Q psy7837 209 SQAI--RDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 209 ~~~~--~~~~~~~~~~L~~gG~lv~~~ 233 (299)
.++. ..+.+-+..++++||.+++.-
T Consensus 142 RAva~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 142 RAVASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ehccchHHHHHHHHHhcccCCcchhhh
Confidence 8764 556678889999999876543
No 229
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.23 E-value=4.8e-06 Score=69.58 Aligned_cols=45 Identities=42% Similarity=0.605 Sum_probs=39.7
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
...++.+|||+|||+|+.+..+++. +.+|+++|+++++++.++++
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~ 116 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQN 116 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 4567899999999999999988875 36899999999999999876
No 230
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.22 E-value=9.4e-06 Score=63.83 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC---eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC-----CCCC
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-----PDAA 201 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~ 201 (299)
..|.-|||+|.|+|.++..+.++|. .++++|.|+.......+.. ..+.++.||+.... ....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----------p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----------PGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----------CCccccccchhhHHHHHhhcCCC
Confidence 4588999999999999999998864 4999999999998888764 34558888876421 2335
Q ss_pred CeeEEEecchhh--------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 202 PYDVIYISQAIR--------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 202 ~fD~v~~~~~~~--------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.||.|++.-++. .+.+.+...|..||.++.....+.
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 699999988764 344788899999999998776643
No 231
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.20 E-value=9.3e-06 Score=71.49 Aligned_cols=43 Identities=37% Similarity=0.451 Sum_probs=39.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHH
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~ 172 (299)
.++.+|||+|||+|.++..+++.|. +|+++|+++.+++.+++|
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN 201 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence 4579999999999999999988875 699999999999999887
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=98.20 E-value=6e-06 Score=69.87 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred ccCCCC--eEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhc-CCcccC---CCCeEEEEcCCCCCCCC-C
Q psy7837 128 HLVYGS--KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRG-APAIAL---AENFEFVCADGRRGYPD-A 200 (299)
Q Consensus 128 ~~~~~~--~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~-~~~~~~---~~~v~~~~~d~~~~~~~-~ 200 (299)
.+.++. +|||+-+|+|..++.++.+|++|+++|.++.+....+.++++. ...... ..+++++.+|....+.. .
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 445566 9999999999999999999999999999999999999988872 100001 25789999998753321 2
Q ss_pred CCeeEEEecchhhh
Q psy7837 201 APYDVIYISQAIRD 214 (299)
Q Consensus 201 ~~fD~v~~~~~~~~ 214 (299)
.+||+|++++++.+
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 46999999999854
No 233
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.20 E-value=2.4e-05 Score=74.72 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=47.2
Q ss_pred cccccCCcchHHHHHHHHhccCC-----CCCEEEEEccCCCHHHHHHHHHhCC-------CceEEEEeCCHHHHHHHHHH
Q psy7837 44 HNAFMESPSDHCLVLELLSGHLK-----YGDKVLEIGTGSGYLTTLFGAMVGI-------SGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 44 ~~~~~~~p~~~~~~~~~l~~~~~-----~g~~vldiG~G~G~~~~~la~~~~~-------~g~v~~~d~~~~~~~~a~~~ 111 (299)
.|+....+.+...|++.+..... ...+|||.+||+|.+...+++.+.. .-.++++|+++..+..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 47777888888888888754322 4468999999999998888776531 12455555555555555544
Q ss_pred HH
Q psy7837 112 VK 113 (299)
Q Consensus 112 l~ 113 (299)
+.
T Consensus 83 l~ 84 (524)
T TIGR02987 83 LG 84 (524)
T ss_pred Hh
Confidence 43
No 234
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.19 E-value=5.6e-06 Score=70.11 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=40.9
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~ 172 (299)
...+|.+|||+|||||-++..+++.. .+|+++|+|+.|++.++++
T Consensus 48 ~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k 94 (238)
T COG2226 48 GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK 94 (238)
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH
Confidence 34489999999999999999999885 7899999999999999886
No 235
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.19 E-value=4.9e-06 Score=70.05 Aligned_cols=45 Identities=40% Similarity=0.617 Sum_probs=39.7
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCC---eEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~---~v~~~D~~~~~~~~a~~~ 172 (299)
.+.++.+|||+|||+|+++..+++... .|+++|+++.+++.++++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~ 121 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERR 121 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 457789999999999999999988743 499999999999999875
No 236
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.18 E-value=6.3e-06 Score=67.69 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=44.0
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.++.+|||+|||+|..+..++... +.++++++|.++.+++.++++...
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~ 91 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE 91 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH
Confidence 35668999999999999999998754 457999999999999999998876
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=9.2e-06 Score=65.40 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=36.5
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~ 103 (299)
.+++|++|+|+-.|.||+|..++..++++|.|+++--.+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 4899999999999999999999999999999999876544
No 238
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.16 E-value=5.9e-05 Score=64.87 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=85.7
Q ss_pred HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-C---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcC
Q psy7837 118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-G---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCAD 192 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d 192 (299)
.+...+..+..-...-+||||.||.|...+..... . .+|...|.++..++..++.++. .+..++ +|.++|
T Consensus 122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-----~gL~~i~~f~~~d 196 (311)
T PF12147_consen 122 LIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-----RGLEDIARFEQGD 196 (311)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-----cCCccceEEEecC
Confidence 33444555555556789999999999988866544 2 4699999999999999999988 455555 999999
Q ss_pred CCCC--CC-CCCCeeEEEecchhhhHH---------HHHHHhccCCcEEEEEecCCC
Q psy7837 193 GRRG--YP-DAAPYDVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 193 ~~~~--~~-~~~~fD~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+.+. +. -....+++++.+.++-++ ..+...+.|||.|+....++.
T Consensus 197 Afd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 197 AFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred CCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 8852 11 123478999888765333 457889999999999886654
No 239
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.15 E-value=7.5e-06 Score=68.78 Aligned_cols=46 Identities=43% Similarity=0.629 Sum_probs=40.3
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
..+.++.+|||+|||+|+++..+++. +.+|+++|+++++++.++++
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 34577999999999999999988876 35899999999999999875
No 240
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.15 E-value=6e-06 Score=66.08 Aligned_cols=93 Identities=24% Similarity=0.246 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch
Q psy7837 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 211 (299)
...+.|+|+|+|.++...+....+|+++|.+|...+.+.+|+.. .+..|++++.+|+...-+ ...|+|+|-..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v-----~g~~n~evv~gDA~~y~f--e~ADvvicEml 105 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHV-----PGDVNWEVVVGDARDYDF--ENADVVICEML 105 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCC-----CCCcceEEEecccccccc--cccceeHHHHh
Confidence 47899999999999999999988899999999999999999877 678999999999987544 34799988553
Q ss_pred hh--------hHHHHHHHhccCCcEEEE
Q psy7837 212 IR--------DIPWHIVDQLKLGGRMLF 231 (299)
Q Consensus 212 ~~--------~~~~~~~~~L~~gG~lv~ 231 (299)
-. .+...+.+.|+.++.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 22 223467778888887764
No 241
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.14 E-value=8.1e-06 Score=71.81 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=56.6
Q ss_pred ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.||+. .++.+...+++.+. +.++++|||||||+|.+|..+++.. .+++++|+++.+++.+++.+..
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHh
Confidence 46655 57888888888776 8899999999999999999998864 4699999999999999988764
No 242
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.13 E-value=7.9e-06 Score=70.66 Aligned_cols=53 Identities=23% Similarity=0.397 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh
Confidence 45555554 5788999999999999999999876 45789999999999998865
No 243
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.11 E-value=1.2e-05 Score=60.97 Aligned_cols=45 Identities=33% Similarity=0.465 Sum_probs=39.4
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~ 172 (299)
...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 4556789999999999999999886 46899999999999998865
No 244
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.11 E-value=9.7e-06 Score=67.65 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=41.9
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l 112 (299)
.+.++.+|||+|||+|..+..+++..+ ...++|+|+++.+++.+++.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC
Confidence 467888999999999999999988753 468999999999999998754
No 245
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.10 E-value=8.3e-06 Score=66.74 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=41.3
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+|.+|||+|||+|.++..++.. .+.++++++|.++.+++.++++..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~ 88 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAE 88 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4899999999999999999854 4568899999999999999888765
No 246
>KOG3045|consensus
Probab=98.09 E-value=1.9e-05 Score=66.48 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=68.4
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
+........|.|+|||.+.++. +.-..|++.|+ ...|-.++.+|+...+.++++.|+
T Consensus 175 ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL--------------------~a~~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 175 IKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDL--------------------VAVNERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHhCcCceEEEecccchhhhhh---ccccceeeeee--------------------ecCCCceeeccccCCcCccCcccE
Confidence 3334556799999999988766 44556999986 345777889999988888899999
Q ss_pred EEecchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 206 IYISQAI-----RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 206 v~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+++-..+ ..+..++.++|++||.++|..-...
T Consensus 232 aV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 232 AVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred EEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 8764443 4566899999999999999865543
No 247
>PRK05785 hypothetical protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=68.20 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
..+++.+.....++.+|||+|||+|.++..+++.. .++++++|+++.|++.+++.
T Consensus 39 ~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 39 AELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc
Confidence 44555555444568899999999999999998876 36899999999999988753
No 248
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.07 E-value=1.4e-05 Score=67.13 Aligned_cols=47 Identities=36% Similarity=0.597 Sum_probs=41.3
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHH
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~ 172 (299)
.....++.+|||+|||+|+++..+++.+.+++++|.++++++.++++
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~ 119 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRR 119 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHH
Confidence 34557789999999999999998888877899999999999988865
No 249
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.07 E-value=4.3e-05 Score=66.33 Aligned_cols=84 Identities=23% Similarity=0.161 Sum_probs=65.7
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA-- 200 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-- 200 (299)
|.......++..|+|+|+|.|.+|..+...+.+++++|.++.+++..++.+. ...+++++.+|+.......
T Consensus 22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~-------~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 22 IVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA-------SNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT-------TCSSEEEEES-TTTSCGGGHC
T ss_pred HHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh-------hcccceeeecchhccccHHhh
Confidence 3333455589999999999999999999999999999999999999998754 2468999999998643321
Q ss_pred -CCeeEEEecchhh
Q psy7837 201 -APYDVIYISQAIR 213 (299)
Q Consensus 201 -~~fD~v~~~~~~~ 213 (299)
.....|+.+.+..
T Consensus 95 ~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 95 KNQPLLVVGNLPYN 108 (262)
T ss_dssp SSSEEEEEEEETGT
T ss_pred cCCceEEEEEeccc
Confidence 3456778777763
No 250
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.07 E-value=1.2e-05 Score=67.24 Aligned_cols=46 Identities=43% Similarity=0.702 Sum_probs=38.1
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~ 172 (299)
..+.++.+|||||||+|+++..++.. + ..|+++|.++.+.+.|+++
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRN 116 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHH
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHH
Confidence 34788999999999999999999987 3 3699999999999999876
No 251
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.07 E-value=7.8e-06 Score=69.59 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=35.1
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
.....++.+|||+|||+|.++..+++. ..+|+++|+|++|++.++++
T Consensus 42 ~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 42 LLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp HHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred ccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 345677899999999999999999876 35799999999999999986
No 252
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.06 E-value=2e-05 Score=67.50 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=44.2
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVG-ISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~-~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.++.+|||+|||+|..+..+++.+. +..+++++|+++.+++.+++++..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~ 101 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA 101 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 46888999999999999999998764 468999999999999999988765
No 253
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.06 E-value=1.7e-05 Score=64.89 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHHHHHhhhcccC--CCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC
Q psy7837 118 TYIKRINFYGHLV--YGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192 (299)
Q Consensus 118 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 192 (299)
|+.+......-+. ++.+|||+||++|.++..+..++ ..|+++|+.+. ....++.++++|
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------------~~~~~~~~i~~d 71 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------------DPLQNVSFIQGD 71 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------------GS-TTEEBTTGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----------------ccccceeeeecc
Confidence 3343333343233 45899999999999999999997 67999999765 122456666666
Q ss_pred CCCC--------CC--CCCCeeEEEecchhh-----------h------HHHHHHHhccCCcEEEEEecCC
Q psy7837 193 GRRG--------YP--DAAPYDVIYISQAIR-----------D------IPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 193 ~~~~--------~~--~~~~fD~v~~~~~~~-----------~------~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
.... .. ...++|+|+++.... . ...-+...|++||.+++.....
T Consensus 72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 72 ITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp GEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 5421 11 125899999999321 1 1124567899999999877553
No 254
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.05 E-value=1.1e-05 Score=69.57 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHH----cCCeEEEEeCChHHHHHHHHH
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAY----MGAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~----~~~~v~~~D~~~~~~~~a~~~ 172 (299)
.++.+|||+|||+|..+..+++ .+.+++++|+|+.|++.++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~ 101 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRH 101 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 4678999999999999988876 267899999999999999987
No 255
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.05 E-value=1.4e-05 Score=69.16 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=45.8
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l 112 (299)
..+++.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++.+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC
Confidence 44555544 6788999999999999999999876 3579999999999999988765
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.04 E-value=3.5e-05 Score=67.94 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH--HHhcCCcccCCCCeEEEEcCCCCCCC-CCCCee
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN--IRRGAPAIALAENFEFVCADGRRGYP-DAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 204 (299)
..-.+||-+|.|.|....++.+.- .+++-+|.+|.|++.++++ ++.-+.......+++++..|+.+... ..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 445799999999999999999883 4699999999999999943 33322112345789999999886432 235799
Q ss_pred EEEecchhhh-----------HHHHHHHhccCCcEEEEEecCCCC
Q psy7837 205 VIYISQAIRD-----------IPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 205 ~v~~~~~~~~-----------~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
.||.+..-+. +..-+.+.|+++|.+++....+-.
T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 9999765322 224678899999999999876653
No 257
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.04 E-value=1.4e-05 Score=69.25 Aligned_cols=65 Identities=32% Similarity=0.322 Sum_probs=55.0
Q ss_pred ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.||+. .++.....+++.+. +.++++|||+|||+|.+|..+++.. .+++++|+++.+++.+++.+.
T Consensus 7 ~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 7 LGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc
Confidence 45644 67888888888775 7889999999999999999999873 479999999999999887764
No 258
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.04 E-value=1.5e-05 Score=64.39 Aligned_cols=54 Identities=33% Similarity=0.437 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..+++.+. +.++++|||+|||+|.++..+++. .++++++|+++.+++.+++++.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhc
Confidence 45556555 778899999999999999999987 2579999999999999987764
No 259
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.04 E-value=1.8e-05 Score=68.73 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=40.7
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~ 173 (299)
..+.++.+|||+|||+|.++..+++. + .+|+++|+|++|++.|+++.
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 35567899999999999999988875 3 58999999999999998764
No 260
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.03 E-value=6.9e-05 Score=66.30 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=64.7
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEE
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIY 207 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~ 207 (299)
.+.+|.++||+||++|.++..+.++|.+|+++|..+ +-... ....++....+|.....+..+.+|+++
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L-----------~~~~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSL-----------MDTGQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhh-----------hCCCCEEEEeccCcccCCCCCCCCEEE
Confidence 357899999999999999999999999999999543 21111 234689999999876554357899999
Q ss_pred ecchhh--hHHHHHHHhccCC
Q psy7837 208 ISQAIR--DIPWHIVDQLKLG 226 (299)
Q Consensus 208 ~~~~~~--~~~~~~~~~L~~g 226 (299)
++.+.. .+.+-+.++|..|
T Consensus 276 cDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 276 CDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EecccCHHHHHHHHHHHHhcC
Confidence 998753 3444555555544
No 261
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.02 E-value=1.9e-05 Score=65.44 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=44.7
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+. ..++.+|||+|||+|..+.++++.. .+|+++|+++.+++.+++....
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~ 74 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR 74 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH
Confidence 45555554 4556799999999999999999853 4799999999999998877654
No 262
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.02 E-value=5.4e-05 Score=62.98 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=43.3
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|.....+++.+. +.+++.++|+|||.|......+...+ -.+.+|+|+.+...+.+......
T Consensus 28 ~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~ 88 (205)
T PF08123_consen 28 PEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEE 88 (205)
T ss_dssp HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHH
Confidence 344567777765 89999999999999999888776654 24699999999999888876655
No 263
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.01 E-value=6.5e-05 Score=62.51 Aligned_cols=96 Identities=25% Similarity=0.308 Sum_probs=66.6
Q ss_pred EEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecch-
Q psy7837 135 VLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQA- 211 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~- 211 (299)
|+||||--|+++..+.+.|. .++++|+++..++.|+++++.+ +...++++..+|......+....|.|++.++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~----~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY----GLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT----T-TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 68999999999999999986 5999999999999999999985 4578899999998876555344777766554
Q ss_pred ---hhhHHHHHHHhccCCcEEEEEec
Q psy7837 212 ---IRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 212 ---~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
...+.++....++..-.|++.-.
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 23444455555555556666544
No 264
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.01 E-value=2.3e-05 Score=66.09 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=45.5
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+.....++.+|||+|||+|.++..++.. ..+++++|+++.+++.+++.+..
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence 3444454422457899999999999999999875 34799999999999999988865
No 265
>KOG2940|consensus
Probab=98.00 E-value=1.4e-05 Score=65.96 Aligned_cols=101 Identities=15% Similarity=0.051 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
+....++||||+.|.....+...+. +++-+|.|-.|++.++..- .....+...++|-......++++|+|+.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-------dp~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-------DPSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-------CCceEEEEEecchhcccccccchhhhhh
Confidence 3467899999999999999988875 5999999999999887641 1233566778887776677799999999
Q ss_pred cchhhhHHH------HHHHhccCCcEEEEEecCCC
Q psy7837 209 SQAIRDIPW------HIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~~~~~~~------~~~~~L~~gG~lv~~~~~~~ 237 (299)
...++|+.+ .++..|||+|.++.+.....
T Consensus 144 SlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 144 SLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred hhhhhhhccCchHHHHHHHhcCCCccchhHHhccc
Confidence 999988763 78899999999998766543
No 266
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.00 E-value=2.8e-05 Score=62.79 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=40.4
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~ 172 (299)
.+.++.+++|||||||+.+..++.. ..+|+++|.++++++..++|
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N 77 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN 77 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence 5678999999999999999999954 67899999999999988876
No 267
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=4e-05 Score=61.76 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=50.3
Q ss_pred cccCCcchHHHHHHHH-hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 46 AFMESPSDHCLVLELL-SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 46 ~~~~~p~~~~~~~~~l-~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|....+.+.+.++... ......|..|+|+|||+|.++...+.... .+|+++|++++.++.++++..+
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh
Confidence 4444445555555443 33456788999999999999887765543 5899999999999999999876
No 268
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.00 E-value=2.4e-05 Score=66.46 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=39.8
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
..+.++.+|||+|||+|.++..+++. +.+|+++|+++++++.++++
T Consensus 41 l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~ 89 (231)
T TIGR02752 41 MNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK 89 (231)
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 35567899999999999999999875 35899999999999988865
No 269
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.99 E-value=2.2e-05 Score=67.86 Aligned_cols=65 Identities=34% Similarity=0.297 Sum_probs=54.1
Q ss_pred cccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 44 HNAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 44 ~~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.||+ +..+.+...+++.+. +.++++|||+|||+|.++..+++... .++++|+++.+++.+++.+.
T Consensus 7 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 7 LGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhC
Confidence 4553 357778888888775 77899999999999999999998864 49999999999998887653
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=6.7e-05 Score=62.68 Aligned_cols=119 Identities=23% Similarity=0.217 Sum_probs=84.9
Q ss_pred HHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHH-HHHHHHhcCCcccCCCCe
Q psy7837 109 RKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKR-AMKNIRRGAPAIALAENF 186 (299)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~-a~~~~~~~~~~~~~~~~v 186 (299)
.....+++.++...+....-..++..|||+|+.||.|+..+.+.|+. |+++|..-+.+.- .|. ..++
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----------d~rV 125 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----------DPRV 125 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----------CCcE
Confidence 33455666777778888887889999999999999999999999876 9999997654432 221 2232
Q ss_pred -EEEEcCCCCCCCC--CCCeeEEEecchhh---hHHHHHHHhccCCcEEEEEecCCCC
Q psy7837 187 -EFVCADGRRGYPD--AAPYDVIYISQAIR---DIPWHIVDQLKLGGRMLFIKGHEDD 238 (299)
Q Consensus 187 -~~~~~d~~~~~~~--~~~fD~v~~~~~~~---~~~~~~~~~L~~gG~lv~~~~~~~~ 238 (299)
.+...|+....++ .+..|+++++..+. .+...+..++++++.+++-+.+...
T Consensus 126 ~~~E~tN~r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 126 IVLERTNVRYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred EEEecCChhhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhh
Confidence 3333444432111 13578999988764 4567899999999999998877643
No 271
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.98 E-value=2.3e-05 Score=65.01 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++....
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 34455554 5677899999999999999999852 3799999999999999987765
No 272
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.95 E-value=1.8e-05 Score=58.14 Aligned_cols=44 Identities=34% Similarity=0.615 Sum_probs=35.5
Q ss_pred EEEEccCCCHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 71 VLEIGTGSGYLTTLFGAMV--GISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 71 vldiG~G~G~~~~~la~~~--~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|||+|||+|..+..+.+.+ +++.+++++|+++.+++.+++....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~ 46 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE 46 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh
Confidence 7999999999999999987 4347999999999999999988865
No 273
>KOG4589|consensus
Probab=97.95 E-value=2.5e-05 Score=62.61 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=35.6
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCC
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 101 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~ 101 (299)
.++|+++|||+||.+|.|++..-+..++.|.+.|+|+.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 46899999999999999999999999999999999973
No 274
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.94 E-value=3.9e-05 Score=63.73 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=40.5
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
..+.++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++
T Consensus 36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 35678999999999999999998764 35799999999999999887
No 275
>PLN02244 tocopherol O-methyltransferase
Probab=97.94 E-value=3.3e-05 Score=69.64 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+++++|||+|||+|.++..+++..+ .+++++|+++.+++.+++....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~ 163 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA 163 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh
Confidence 6789999999999999999998763 5899999999999999887765
No 276
>PRK08317 hypothetical protein; Provisional
Probab=97.93 E-value=3.9e-05 Score=65.21 Aligned_cols=55 Identities=33% Similarity=0.559 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
..+++.+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++.
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 34445544 78899999999999999999999887778999999999999998887
No 277
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.92 E-value=4.9e-05 Score=65.13 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=78.0
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCe
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (299)
..+.+.+...-..|.++||+|||+-..-...+.... ..++..|..+.-.+..++.++.. .
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~------------------~ 103 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKE------------------G 103 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-------------------T
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCC------------------C
Confidence 344455555556788999999999655433333322 36999999998888877777651 0
Q ss_pred EEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC------CCCeeEEEe
Q psy7837 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD------AAPYDVIYI 208 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~v~~ 208 (299)
..| +-.+...++.+-. --+...+..+..|+.+ -.++.+|+.+..+- ..+||+|++
T Consensus 104 a~D----Ws~~~~~v~~lEg---~~~~~~e~e~~lR~~V------------k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s 164 (256)
T PF01234_consen 104 AFD----WSPFWKYVCELEG---KREKWEEKEEKLRRAV------------KQVVPCDVTQPNPLDPPVVLPPKFDCVIS 164 (256)
T ss_dssp S------THHHHHHHHHHTT---SSSGHHHHHHHHHHHE------------EEEEE--TTSSSTTTTS-SS-SSEEEEEE
T ss_pred CCC----ccHHHHHHHhccC---CcchhhhHHHHHHHhh------------ceEEEeeccCCCCCCccccCccchhhhhh
Confidence 000 1122222222211 0000122233333332 23677888753321 124999999
Q ss_pred cchhhh----------HHHHHHHhccCCcEEEEEecC
Q psy7837 209 SQAIRD----------IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~~~~----------~~~~~~~~L~~gG~lv~~~~~ 235 (299)
..+++. ..+++.++|||||.|++...-
T Consensus 165 ~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 165 SFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp ESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 888753 335899999999999997653
No 278
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00017 Score=58.72 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=85.8
Q ss_pred cchHHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhccc
Q psy7837 51 PSDHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL 129 (299)
Q Consensus 51 p~~~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 129 (299)
..+.+.++.-|. -.+++|++||=+|+.+|......+..++ +|.+|+++++++....-.....+
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--------------- 122 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--------------- 122 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---------------
Confidence 345566666654 3478999999999999999999999998 89999999999877654444433
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v 206 (299)
..|+-.+.+|+..+.. --+..|+|
T Consensus 123 -----------------------------------------------------R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 123 -----------------------------------------------------RPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred -----------------------------------------------------CCCceeeecccCCcHHhhhhcccccEE
Confidence 3588888899875321 11458999
Q ss_pred Eecchhh----hHHHHHHHhccCCcEEEEEec
Q psy7837 207 YISQAIR----DIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 207 ~~~~~~~----~~~~~~~~~L~~gG~lv~~~~ 234 (299)
+.+-.-. -+..++...|++||.+++...
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 9887643 244678889999997777653
No 279
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.90 E-value=3.4e-06 Score=62.62 Aligned_cols=95 Identities=31% Similarity=0.478 Sum_probs=38.5
Q ss_pred EEEccCCCHHHHHHHHHhCCCc--eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHH
Q psy7837 72 LEIGTGSGYLTTLFGAMVGISG--KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALF 149 (299)
Q Consensus 72 ldiG~G~G~~~~~la~~~~~~g--~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l 149 (299)
||+|+..|+.+.++++.+.+.+ +++++|..+. .+..++.+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~---------------------------------- 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA---------------------------------- 45 (106)
T ss_dssp --------------------------EEEESS-------------G----------------------------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc----------------------------------
Confidence 6899999999999998887654 7888888886 22222222210
Q ss_pred HHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC--CCCCeeEEEecchh--h---hHHHHHHHh
Q psy7837 150 AYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP--DAAPYDVIYISQAI--R---DIPWHIVDQ 222 (299)
Q Consensus 150 a~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~~~~--~---~~~~~~~~~ 222 (299)
....+++++.++...... ...+||++++++.- . .-.+.+.+.
T Consensus 46 -------------------------------~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~ 94 (106)
T PF13578_consen 46 -------------------------------GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPR 94 (106)
T ss_dssp -------------------------------GG-BTEEEEES-THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGG
T ss_pred -------------------------------CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 344579999998764221 13689999999862 2 233578889
Q ss_pred ccCCcEEEEE
Q psy7837 223 LKLGGRMLFI 232 (299)
Q Consensus 223 L~~gG~lv~~ 232 (299)
|+|||.+++-
T Consensus 95 l~~ggviv~d 104 (106)
T PF13578_consen 95 LAPGGVIVFD 104 (106)
T ss_dssp EEEEEEEEEE
T ss_pred cCCCeEEEEe
Confidence 9999999874
No 280
>KOG2730|consensus
Probab=97.90 E-value=1.1e-05 Score=66.13 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC----CCCCCeeEE
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY----PDAAPYDVI 206 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v 206 (299)
....|+|..||.|..+..++..+..|+++|+++.-+..|++|++.+ +...+++|++||+.+.. .....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiY----GI~~rItFI~GD~ld~~~~lq~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVY----GVPDRITFICGDFLDLASKLKADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceee----cCCceeEEEechHHHHHHHHhhhhheeeee
Confidence 3678999999999999999999999999999999999999999986 56779999999987422 222457888
Q ss_pred Eecchh
Q psy7837 207 YISQAI 212 (299)
Q Consensus 207 ~~~~~~ 212 (299)
+..++.
T Consensus 170 f~sppw 175 (263)
T KOG2730|consen 170 FLSPPW 175 (263)
T ss_pred ecCCCC
Confidence 887764
No 281
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.89 E-value=2.2e-05 Score=64.39 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=44.4
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+..+|.|+|||+|..|..|++.++ ...++|+|.|+.|++.|+..+..
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~ 76 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPD 76 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCC
Confidence 57788999999999999999999985 58999999999999999888765
No 282
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.88 E-value=7.2e-05 Score=65.69 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=54.2
Q ss_pred cccccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 40 HNIGHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 40 ~~~~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+..+..+..|.....+...+...+ .++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus 92 f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 92 FYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred EEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 34445555555555444444443222 3467999999999999999998753 46899999999999999999876
No 283
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.88 E-value=6.5e-05 Score=60.81 Aligned_cols=57 Identities=30% Similarity=0.497 Sum_probs=48.1
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+... ++.+|||+|||+|..+..+++.. +..+++++|+++..++.+++++..
T Consensus 21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4566666633 78899999999999999999865 456799999999999999999887
No 284
>KOG1541|consensus
Probab=97.87 E-value=3e-05 Score=63.83 Aligned_cols=71 Identities=30% Similarity=0.399 Sum_probs=52.8
Q ss_pred CCcchHHHHHHHHhccCCC--CCEEEEEccCCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhh
Q psy7837 49 ESPSDHCLVLELLSGHLKY--GDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINF 125 (299)
Q Consensus 49 ~~p~~~~~~~~~l~~~~~~--g~~vldiG~G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~ 125 (299)
++-.+.++.++.|. +.+ ..-+||||||+|-.+..+.+ +| ..+|+|+++.|++.|.+..-++
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~----~Gh~wiGvDiSpsML~~a~~~e~eg---------- 95 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSD----SGHQWIGVDISPSMLEQAVERELEG---------- 95 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheecc----CCceEEeecCCHHHHHHHHHhhhhc----------
Confidence 34556677888876 554 56789999999999888875 34 4679999999999998743331
Q ss_pred hcccCCCCeEEEEcCC
Q psy7837 126 YGHLVYGSKVLDIGSG 141 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G 141 (299)
+-..-|.|.|
T Consensus 96 ------dlil~DMG~G 105 (270)
T KOG1541|consen 96 ------DLILCDMGEG 105 (270)
T ss_pred ------CeeeeecCCC
Confidence 4456677777
No 285
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.86 E-value=5.1e-05 Score=69.44 Aligned_cols=54 Identities=31% Similarity=0.362 Sum_probs=45.1
Q ss_pred HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.+++.+. +++|.+|||+|||+|.++..+++..+ .+|+++|+++.+++.++++..
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc
Confidence 3444444 78999999999999999999988754 489999999999999988764
No 286
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.86 E-value=4e-05 Score=63.87 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH
Confidence 367899999999999999998875 457899999999999999988765
No 287
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.85 E-value=0.00026 Score=66.18 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=48.2
Q ss_pred cchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+...+.+++.+.+. +.++++|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 279 ~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 33344444444332 4688999999999999999999875 4799999999999999998865
No 288
>PRK04266 fibrillarin; Provisional
Probab=97.85 E-value=6.6e-05 Score=63.60 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=39.6
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMK 171 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~ 171 (299)
..+.++.+|||+|||+|.++..+++.. ..|+++|+++.|++.+.+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~ 114 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLE 114 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 467789999999999999999999873 589999999999987754
No 289
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.85 E-value=0.00014 Score=63.85 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=52.7
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|=+...+++.|. +++|..++|..+|.|..|..+++.++. |+|+++|.++..++.+++.+..
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhh
Confidence 345566777776 789999999999999999999998865 9999999999999999988765
No 290
>PRK14967 putative methyltransferase; Provisional
Probab=97.84 E-value=0.00011 Score=62.22 Aligned_cols=48 Identities=31% Similarity=0.423 Sum_probs=42.0
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++++++|||+|||+|.++..+++. + .++++++|+++.+++.+++++..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~ 81 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALL 81 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHH
Confidence 678999999999999999998875 3 35899999999999999988765
No 291
>PRK06202 hypothetical protein; Provisional
Probab=97.84 E-value=5e-05 Score=64.66 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=40.7
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.++.+|||+|||+|.++..+++.. ++..+++++|+++.+++.+++...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~ 109 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR 109 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence 577899999999999999988764 334589999999999999987654
No 292
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.83 E-value=6.9e-05 Score=66.43 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~ 107 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAA 107 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHH
Confidence 45789999999999999998877 57899999999999999876
No 293
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.82 E-value=0.00062 Score=58.79 Aligned_cols=105 Identities=22% Similarity=0.158 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh----cCCc--------------------------
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR----GAPA-------------------------- 179 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~----~~~~-------------------------- 179 (299)
....+||-.|||.|+++..++.+|..+.+.|.|--|+-..+-.+.. ++..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4467999999999999999999999999999999987655543321 0000
Q ss_pred -----ccCCCCeEEEEcCCCCCCCCC---CCeeEEEecchh---hh---HHHHHHHhccCCcEEEEEecC
Q psy7837 180 -----IALAENFEFVCADGRRGYPDA---APYDVIYISQAI---RD---IPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 180 -----~~~~~~v~~~~~d~~~~~~~~---~~fD~v~~~~~~---~~---~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.....+.....||........ +.||+|+...-+ +. ..+.+.++||||| +.|..++
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 011235666777777544443 689998765433 22 3368999999999 5666654
No 294
>KOG1596|consensus
Probab=97.82 E-value=9.4e-05 Score=61.63 Aligned_cols=105 Identities=27% Similarity=0.294 Sum_probs=77.1
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCc
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG 143 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G 143 (299)
+++||.+||=+|+++|+.-...+..++++|-||+++.+..--. +.+.-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGR---dL~nm----------------------------- 200 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGR---DLINM----------------------------- 200 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchH---HHHHH-----------------------------
Confidence 5799999999999999999999999999999999998764221 11111
Q ss_pred HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEEecchhhhHH----
Q psy7837 144 YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIYISQAIRDIP---- 216 (299)
Q Consensus 144 ~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~---- 216 (299)
| .-..|+-.+.-|+..+.. .-+..|+||++..-....
T Consensus 201 -------------------------A-----------kkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDvaqpdq~Riva 244 (317)
T KOG1596|consen 201 -------------------------A-----------KKRTNIIPIIEDARHPAKYRMLVGMVDVIFADVAQPDQARIVA 244 (317)
T ss_pred -------------------------h-----------hccCCceeeeccCCCchheeeeeeeEEEEeccCCCchhhhhhh
Confidence 1 124578888888875321 114689999887654332
Q ss_pred HHHHHhccCCcEEEEEecCC
Q psy7837 217 WHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 217 ~~~~~~L~~gG~lv~~~~~~ 236 (299)
-+....||+||.+++++...
T Consensus 245 LNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 245 LNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred hhhhhhhccCCeEEEEEecc
Confidence 36778899999999987543
No 295
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.82 E-value=7.6e-05 Score=64.55 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.++++...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~ 88 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEA 88 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh
Confidence 456899999999999999999863 4799999999999999988765
No 296
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.82 E-value=5e-05 Score=57.15 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=41.3
Q ss_pred CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|.+|||+|||+|.+...+++.. ..+++++|+++..++.++.++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHH
Confidence 6799999999999999999886 57899999999999999998876
No 297
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.81 E-value=0.0003 Score=55.07 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=66.4
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHH------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCC
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAY------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 201 (299)
...+...|+|+|||.|+++..++. .+.+|+++|.++..++.+++..+.... ....+..+..++...... ..
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS--DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc--hhhccchhhccchhhhcc-cC
Confidence 346788999999999999999988 478899999999999999888876310 022566677666543222 24
Q ss_pred CeeEEEecchhhhHHHHH-HHhccCCcEEEEEec
Q psy7837 202 PYDVIYISQAIRDIPWHI-VDQLKLGGRMLFIKG 234 (299)
Q Consensus 202 ~fD~v~~~~~~~~~~~~~-~~~L~~gG~lv~~~~ 234 (299)
..++++.--..-.+.+.+ ...++++-..++..+
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp 132 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALRLFIRPNARFLVLVP 132 (141)
T ss_pred CCeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence 456666544333333222 222235544444433
No 298
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=7e-05 Score=65.53 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=51.8
Q ss_pred ccccccccCCcchHHHHHHHHhccCCCCC-EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 41 NIGHNAFMESPSDHCLVLELLSGHLKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 41 ~~~~~~~~~~p~~~~~~~~~l~~~~~~g~-~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+..+..+..|.. ..+++.+...+...+ +|||+|||||..+..++.... ...|+++|+++..++.|+++...
T Consensus 84 ~v~~~vliPr~dT-e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 84 KVDEGVLIPRPDT-ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAER 156 (280)
T ss_pred eeCCCceecCCch-HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHH
Confidence 3334444555554 344444322233333 799999999999999998875 36899999999999999999987
No 299
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.78 E-value=7.8e-05 Score=64.75 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..+++.+. +.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++..
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcC
Confidence 44444443 7899999999999999999888754 3589999999999999987654
No 300
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.78 E-value=8.1e-05 Score=66.30 Aligned_cols=45 Identities=33% Similarity=0.593 Sum_probs=39.3
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~ 172 (299)
.+.++.+|||+|||+|+++..+++.. ..|+++|+++.+++.++++
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~ 124 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence 45678999999999999999998863 3699999999999998875
No 301
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.76 E-value=0.00017 Score=63.08 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCc-HHHHHHHH-cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CC-CCCCCee
Q psy7837 132 GSKVLDIGSGSG-YLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GY-PDAAPYD 204 (299)
Q Consensus 132 ~~~vLDiG~G~G-~~~~~la~-~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~-~~~~~fD 204 (299)
..++||||||.. .+.+..++ .+++++|+|+++..++.|+++++.|. ....+|+++...-.. .. .....||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~---~L~~~I~l~~~~~~~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNP---NLESRIELRKQKNPDNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT----T-TTTEEEEE--ST-SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcc---ccccceEEEEcCCccccchhhhcccceee
Confidence 568999999955 44554444 49999999999999999999999852 255678887664332 11 1235799
Q ss_pred EEEecchhhhHHHH
Q psy7837 205 VIYISQAIRDIPWH 218 (299)
Q Consensus 205 ~v~~~~~~~~~~~~ 218 (299)
+..|++++..-.++
T Consensus 180 ftmCNPPFy~s~~e 193 (299)
T PF05971_consen 180 FTMCNPPFYSSQEE 193 (299)
T ss_dssp EEEE-----SS---
T ss_pred EEecCCccccChhh
Confidence 99999998765543
No 302
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.75 E-value=0.0001 Score=60.13 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=41.2
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..++.+|||+|||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~ 63 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKL 63 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHH
Confidence 45678999999999999999988642 799999999999999998865
No 303
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.74 E-value=8.1e-05 Score=60.49 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=38.9
Q ss_pred hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 62 ~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
.+.+.||.+|||+|||.|.+-..|.+. ++...+|+|+++..+..+.+
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~ 54 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA 54 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH
Confidence 344889999999999999999888875 35689999999998766544
No 304
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.74 E-value=0.00013 Score=61.90 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=45.0
Q ss_pred HHHHHHHhc-cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~-~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+.. ...++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++....
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~ 107 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPE 107 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHh
Confidence 344455442 24578899999999999999998753 3599999999999999988765
No 305
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.73 E-value=0.00012 Score=65.12 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=45.0
Q ss_pred HHHHHHHhcc-CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~-~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+... -.++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++...
T Consensus 131 ~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 131 EKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKE 188 (315)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHh
Confidence 4455555421 136789999999999999999975 24799999999999999988765
No 306
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00011 Score=62.92 Aligned_cols=65 Identities=28% Similarity=0.279 Sum_probs=54.2
Q ss_pred ccccc-CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 44 HNAFM-ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 44 ~~~~~-~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.||+. .++.....+++... +.+++.|||||+|.|.+|..|++... +|+++|+++.+++..++.+.
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcc
Confidence 35543 46667778887776 78899999999999999999999875 49999999999998888765
No 307
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.71 E-value=0.00014 Score=63.58 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=43.8
Q ss_pred HHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCC--ceEEEEeCCHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGIS--GKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 55 ~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~--g~v~~~d~~~~~~~~a~~~l 112 (299)
..+.+.+...+ ....+|||+|||+|+++..+++.+... ..++|+|+++.+++.+.+..
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 44444444333 355789999999999999999877543 37999999999999887653
No 308
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.71 E-value=7.4e-05 Score=68.24 Aligned_cols=42 Identities=31% Similarity=0.318 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHH
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~ 172 (299)
++.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.+++|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN 294 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999998864 67899999999999999876
No 309
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.71 E-value=9.7e-05 Score=63.66 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=38.1
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC
Confidence 35789999999999999988764 3589999999999999887643
No 310
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.70 E-value=0.00018 Score=63.81 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=52.8
Q ss_pred cccccccccCCcchHHHHHHHHhccCC--CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 40 HNIGHNAFMESPSDHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 40 ~~~~~~~~~~~p~~~~~~~~~l~~~~~--~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+..+..+..|.....+...+...+. +..+|||+|||+|.++..++... +..+++++|+++.+++.+++++..
T Consensus 104 f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 104 FYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred EEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 334444555555554444444432222 23689999999999999998865 346899999999999999999876
No 311
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.70 E-value=0.00014 Score=66.04 Aligned_cols=57 Identities=16% Similarity=0.294 Sum_probs=46.6
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+++.+. ...+.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 55556554 2334699999999999999999875 457999999999999999998865
No 312
>KOG0820|consensus
Probab=97.70 E-value=0.0001 Score=62.55 Aligned_cols=69 Identities=30% Similarity=0.352 Sum_probs=57.3
Q ss_pred ccccccccC-CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 41 NIGHNAFME-SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 41 ~~~~~~~~~-~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+...||.+. .|.+...+++... +++++.|||+|.|+|.+|..+.+... .|+++|+++.|+....++...
T Consensus 33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~g 102 (315)
T KOG0820|consen 33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQG 102 (315)
T ss_pred ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcC
Confidence 445677664 5666677776665 99999999999999999999998765 599999999999998888876
No 313
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.70 E-value=6.4e-05 Score=63.00 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=41.2
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+|.+|||+|||.|.++..+|+.- ..|+|+|+++..++.|+....+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhh
Confidence 489999999999999999999865 4699999999999999977766
No 314
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.70 E-value=0.00016 Score=63.57 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=40.8
Q ss_pred CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+|||+|||+|..+..++.... ..+++++|+++..++.+++++..
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~ 160 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEK 160 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 36999999999999999998763 46899999999999999998875
No 315
>PRK14968 putative methyltransferase; Provisional
Probab=97.69 E-value=0.00021 Score=58.47 Aligned_cols=55 Identities=35% Similarity=0.421 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHH
Confidence 34445554 478899999999999999999887 36899999999999999888764
No 316
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.68 E-value=0.00016 Score=64.93 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=49.6
Q ss_pred CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..|.+...++.... +++|++|||.|||+|.+...++.. ..+++++|+++.+++.++.++..
T Consensus 166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~ 226 (329)
T TIGR01177 166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH 226 (329)
T ss_pred CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence 45666666666554 889999999999999998776654 35799999999999999998876
No 317
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.67 E-value=0.00035 Score=60.99 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=52.8
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD 204 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 204 (299)
......+|||+|||.|..+..+... -.+++++|.|+.+++.++..++... ....... ..+......+..+.|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~~-~~~~~~~~~~~~~~D 104 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAEW-RRVLYRDFLPFPPDD 104 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccchh-hhhhhcccccCCCCc
Confidence 3456789999999999877665543 3469999999999999998876621 1111111 111111111112349
Q ss_pred EEEecchhhhHH
Q psy7837 205 VIYISQAIRDIP 216 (299)
Q Consensus 205 ~v~~~~~~~~~~ 216 (299)
+|++..++..++
T Consensus 105 Lvi~s~~L~EL~ 116 (274)
T PF09243_consen 105 LVIASYVLNELP 116 (274)
T ss_pred EEEEehhhhcCC
Confidence 999999875444
No 318
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.67 E-value=0.00019 Score=61.09 Aligned_cols=58 Identities=26% Similarity=0.513 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+. ..++.+|||+|||+|.++..++...+...+++++|+++.+++.+++++..
T Consensus 41 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 98 (239)
T PRK00216 41 RKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD 98 (239)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc
Confidence 44555554 56789999999999999999999886568999999999999999887654
No 319
>KOG2198|consensus
Probab=97.67 E-value=0.0006 Score=60.60 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHH
Q psy7837 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l 112 (299)
...++.-|.-.++||++|||+++.+|.-|..+.+.+.. .|.+++=|.+..-...-+..+
T Consensus 142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~ 203 (375)
T KOG2198|consen 142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL 203 (375)
T ss_pred hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHH
Confidence 34444334335899999999999999999998887764 368999998877666555555
No 320
>PHA03412 putative methyltransferase; Provisional
Probab=97.67 E-value=7.1e-05 Score=63.11 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=51.7
Q ss_pred ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHHHHH
Q psy7837 43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG--ISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~--~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..|++...+.+.+.+... ...+.+|||+|||+|.++..+++.+. +...++++|+++.+++.+++++.
T Consensus 29 ~~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 29 ELGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred cCCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 357777777776655322 23478999999999999999988653 24689999999999999997753
No 321
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.66 E-value=0.00016 Score=56.51 Aligned_cols=56 Identities=27% Similarity=0.311 Sum_probs=47.2
Q ss_pred eEEEEcCCCcHHHHHHHHcCC--eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837 134 KVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 194 (299)
+++|+|||.|.++..+++.+. +++++|.++.+.+.++++++.+ ...++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n-----~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN-----NLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc-----CCCcEEEEEeeee
Confidence 489999999999999998864 5999999999999999999873 4456777776654
No 322
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.65 E-value=0.00014 Score=64.01 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=42.5
Q ss_pred HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+++.+. .++ +.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++...
T Consensus 111 ~~~~~~~-~~~-~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~ 164 (287)
T PRK12335 111 EVLEAVQ-TVK-PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK 164 (287)
T ss_pred HHHHHhh-ccC-CCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH
Confidence 3444443 234 4599999999999999998852 5799999999999999887765
No 323
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.64 E-value=0.00011 Score=65.41 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=38.8
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.+|.+|||||||+|.++..+++. ..+|+++|.++.+++.++....
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~ 174 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHAD 174 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH
Confidence 46789999999999999999864 3579999999999999987654
No 324
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.63 E-value=0.00015 Score=59.99 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=38.2
Q ss_pred HhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 61 l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
+...+.++++|||+|||+|.++..+++..+ ..++++|+++.+++.++.
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA 54 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence 333466889999999999999998876543 357999999999887753
No 325
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00025 Score=60.28 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++.+-+.++..... +....+|||+|||+|.++..++++..+ .++.++|+++++.+.|++++..
T Consensus 28 ~~~~DaiLL~~~~~-~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 28 RYGTDAILLAAFAP-VPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred ccccHHHHHHhhcc-cccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHh
Confidence 34444666666654 444889999999999999999998654 7999999999999999999976
No 326
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.62 E-value=0.00063 Score=57.26 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCCc-HHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCC--CCeeEE
Q psy7837 130 VYGSKVLDIGSGSG-YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDA--APYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G-~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~fD~v 206 (299)
..|++||-+|=..- +++..+.....+|+.+|+++.+++..++.++. .+.. ++.+..|....+++. ++||++
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~-----~gl~-i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEE-----EGLP-IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH-----HT---EEEE---TTS---TTTSS-BSEE
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH-----cCCc-eEEEEecccccCCHHHhcCCCEE
Confidence 56899999995543 33334445577899999999999999999887 3444 999999999877764 899999
Q ss_pred Eecchh-----hhHHHHHHHhccCCc-EEEEEecCCC
Q psy7837 207 YISQAI-----RDIPWHIVDQLKLGG-RMLFIKGHED 237 (299)
Q Consensus 207 ~~~~~~-----~~~~~~~~~~L~~gG-~lv~~~~~~~ 237 (299)
+.+++. .-+..+....||..| ..++......
T Consensus 117 ~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 117 FTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 999975 334467777887755 6666665544
No 327
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=0.0018 Score=56.25 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=53.9
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+...+++.|. ++++...+|..-|.|..+..+.+.++..|+++++|.++..++.+++.+..
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~ 70 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE 70 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence 4566677776 78999999999999999999999999889999999999999999998876
No 328
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.61 E-value=0.00014 Score=63.55 Aligned_cols=46 Identities=35% Similarity=0.507 Sum_probs=39.0
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~ 172 (299)
..+.++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~ 121 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN 121 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence 45678999999999999988877664 3 4699999999999999875
No 329
>KOG2904|consensus
Probab=97.61 E-value=0.00036 Score=59.45 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=64.8
Q ss_pred CcccccccccccccccccCCcch---HHHHHHHHh-ccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHH
Q psy7837 31 PVLTLLDIPHNIGHNAFMESPSD---HCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLE 106 (299)
Q Consensus 31 ~~~~y~~~~~~~~~~~~~~~p~~---~~~~~~~l~-~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~ 106 (299)
.+..+.|..+....|..+..|.. +..+++.+. +....+..+||+|||+|..+..++..++ +++++++|.++..+.
T Consensus 108 g~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~ 186 (328)
T KOG2904|consen 108 GSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIK 186 (328)
T ss_pred ccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHH
Confidence 44456666666777888888876 344444442 2234566899999999999999999998 799999999999999
Q ss_pred HHHHHHHH
Q psy7837 107 AARKRVKA 114 (299)
Q Consensus 107 ~a~~~l~~ 114 (299)
.|.++..+
T Consensus 187 La~eN~qr 194 (328)
T KOG2904|consen 187 LAKENAQR 194 (328)
T ss_pred HHHHHHHH
Confidence 99998877
No 330
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.61 E-value=0.00032 Score=60.48 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=45.4
Q ss_pred HHHHHHHhccCC---CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLK---YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~---~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+...+. ++.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~ 132 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLAD 132 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 445544433222 345899999999999999987753 35799999999999999999875
No 331
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.61 E-value=0.00015 Score=61.79 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=42.6
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
+..+....++++|||+|||+|+.++.+++. +.+++++|+++.+++.|++++
T Consensus 60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~ 113 (234)
T PLN02781 60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFI 113 (234)
T ss_pred HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 444555677899999999999998888764 468999999999999999873
No 332
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.59 E-value=0.00021 Score=63.40 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~ 109 (299)
..+|.+|||+|||+|+++..++.... ..++|+|.++.++..+.
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFE 161 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHH
Confidence 57789999999999999888876532 47999999999987543
No 333
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00044 Score=57.19 Aligned_cols=106 Identities=25% Similarity=0.322 Sum_probs=78.0
Q ss_pred Hhhhccc-CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC
Q psy7837 123 INFYGHL-VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD 199 (299)
Q Consensus 123 ~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 199 (299)
+...+.+ ..+.+++|+||--++++..+.+.+ ..+++.|+++..++.|.+++..+ ....+++...+|.......
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~----~l~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN----NLSERIDVRLGDGLAVLEL 82 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc----CCcceEEEeccCCccccCc
Confidence 3344443 446679999999999999999885 46999999999999999999886 6778999999999766555
Q ss_pred CCCeeEEEecch----hhhHHHHHHHhccCCcEEEEE
Q psy7837 200 AAPYDVIYISQA----IRDIPWHIVDQLKLGGRMLFI 232 (299)
Q Consensus 200 ~~~fD~v~~~~~----~~~~~~~~~~~L~~gG~lv~~ 232 (299)
...+|.+++.++ ...+.++-...|+.==++++.
T Consensus 83 ~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 83 EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence 557898876554 234445555555433345444
No 334
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.58 E-value=0.00018 Score=59.47 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
...++||+|||+|.++..+++.. ++..++++|++..+++.+++.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~ 62 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK 62 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH
Confidence 45689999999999999999875 467999999999999999888765
No 335
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.58 E-value=0.00033 Score=55.60 Aligned_cols=50 Identities=32% Similarity=0.536 Sum_probs=41.3
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~ 107 (299)
...++.+.+...++.+|||+|||.|.++..+++. +. +++++|+++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GF--EVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TS--EEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CC--EEEEEECCHHHHhh
Confidence 4556666655788999999999999999999665 33 89999999999987
No 336
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.57 E-value=0.0014 Score=50.98 Aligned_cols=97 Identities=27% Similarity=0.346 Sum_probs=66.4
Q ss_pred EEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCC-CCeeEEEe
Q psy7837 135 VLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDA-APYDVIYI 208 (299)
Q Consensus 135 vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~v~~ 208 (299)
++|+|||+|... .+... +..++++|.++.++...+...... ....+.+...|... ..... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-----GLGLVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-----CCCceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999976 33333 347999999999998854443110 00116778888765 23332 37999944
Q ss_pred cchh-----hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 209 SQAI-----RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 209 ~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
.... .....++.+.|+++|.+++......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4443 4566789999999999999877654
No 337
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.57 E-value=0.00013 Score=52.20 Aligned_cols=41 Identities=37% Similarity=0.527 Sum_probs=35.3
Q ss_pred EEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 72 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 72 ldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
||+|||+|..+..+++. +...++++|+++.+++.+++....
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~ 41 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN 41 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc
Confidence 79999999999999998 457899999999999999988765
No 338
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.56 E-value=0.0002 Score=60.36 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=64.4
Q ss_pred eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCC--CeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837 94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG--SKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK 171 (299)
Q Consensus 94 ~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~ 171 (299)
.-+.+|+.+.....-++......+.+.+ -..+.++ .+|||.-+|-|.-++.++..|++|+++|.|+.+....+.
T Consensus 40 ~p~~vDF~~g~~~~R~~~~~g~~~~l~k----A~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~d 115 (234)
T PF04445_consen 40 GPLFVDFHPGAAAYRRKHGGGKGDPLAK----AVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKD 115 (234)
T ss_dssp -EE---SSSHHHHHHHHHSSGGGSHHHH----HTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHH
T ss_pred CCEEEEcCCcHHHHHHhhcCCCccHHHH----HhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHH
Confidence 3677788877665555433221223332 3344444 399999999999999999999999999999988766665
Q ss_pred HHHhcCCcc----cCCCCeEEEEcCCCCCCC-CCCCeeEEEecchhhh
Q psy7837 172 NIRRGAPAI----ALAENFEFVCADGRRGYP-DAAPYDVIYISQAIRD 214 (299)
Q Consensus 172 ~~~~~~~~~----~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~ 214 (299)
-+++...+. ....+++++++|..+.+. +..+||+|++++.+.+
T Consensus 116 GL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 116 GLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 443321110 112589999999886443 3478999999998754
No 339
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.55 E-value=0.00027 Score=63.26 Aligned_cols=52 Identities=27% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
..+...+. ...|.+|||+|||+|+++..++.... ..|+|+|.++.++...+.
T Consensus 112 ~~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a 163 (322)
T PRK15068 112 DRVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEA 163 (322)
T ss_pred HHHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHH
Confidence 34444443 35689999999999999999887632 369999999998865443
No 340
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.55 E-value=0.00034 Score=62.98 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=46.0
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+++.+.. ....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++..
T Consensus 186 ~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 186 QLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred HHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 455555542 334589999999999999999875 346899999999999999998876
No 341
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.55 E-value=0.00023 Score=63.51 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=47.2
Q ss_pred cchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.....+++.+.+.+ .++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 155 ~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 155 PAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 334455554443322 357899999999999999999843 4799999999999999998876
No 342
>KOG2899|consensus
Probab=97.54 E-value=0.00014 Score=60.86 Aligned_cols=47 Identities=32% Similarity=0.437 Sum_probs=41.9
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHh
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~ 175 (299)
...+..+|||||.+|.+++.+++. +++ +.|+|+++..+..|+++++.
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 356789999999999999999987 554 99999999999999999865
No 343
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.53 E-value=0.00049 Score=59.09 Aligned_cols=58 Identities=29% Similarity=0.369 Sum_probs=45.2
Q ss_pred HHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 56 ~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+++.+.+.+ ..+.+|||+|||+|.++..+++... ..+++++|+++.+++.+++++..
T Consensus 75 ~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 75 ELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred HHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 3444443333 3345899999999999999998753 46899999999999999988865
No 344
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.53 E-value=0.00019 Score=60.20 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=35.9
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~ 109 (299)
.++.+|||+|||.|..+.+|++..- .|+|+|+++..++.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFF 73 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHH
Confidence 5788999999999999999997533 6999999999999753
No 345
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.53 E-value=0.00034 Score=57.40 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=41.4
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+++.+. ..++.++||+|||.|..+.+||+..- .|+++|+++..++.+.+...+
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~ 74 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEE 74 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhh
Confidence 34455443 44567999999999999999998744 599999999999988776654
No 346
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.53 E-value=0.00052 Score=61.54 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=40.2
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l 112 (299)
.++.+|||+|||+|.++..+++..+ ..+++++|.++.+++.++++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhh
Confidence 5788999999999999999988764 368999999999999888764
No 347
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00033 Score=60.94 Aligned_cols=58 Identities=31% Similarity=0.442 Sum_probs=49.7
Q ss_pred HHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 54 ~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.+++.|. ...+.+|||+|||.|.++..+++..+ ..+++-+|++...++.+++++..
T Consensus 147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence 356667766 44455999999999999999999876 68999999999999999999986
No 348
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.51 E-value=0.00049 Score=60.04 Aligned_cols=48 Identities=33% Similarity=0.465 Sum_probs=42.7
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 4577899999999999999999877 35789999999999999998876
No 349
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.51 E-value=0.0007 Score=56.14 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=43.3
Q ss_pred HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.++..+.. ..++.+|||+|||+|.++..+.... ..+++++|+++..++.+++++..
T Consensus 43 ~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 43 TLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred HHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHH
Confidence 34555542 3568899999999999998543332 25899999999999999998876
No 350
>PRK04457 spermidine synthase; Provisional
Probab=97.50 E-value=0.00094 Score=57.94 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..++.+|||+|||+|.++.++++.. +..+++++|+++.+++.+++.+.
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcC
Confidence 3456799999999999999999876 46789999999999999998764
No 351
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.49 E-value=0.0023 Score=56.92 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHHH
Q psy7837 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 58 ~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
...+.+.+.++..++|+|||+|.-+..|.+.+.+ .-+.+++|++..+++.+.+.+.
T Consensus 67 ~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 67 SSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred HHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 3344455678889999999999988877765532 2345556666555555555554
No 352
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.49 E-value=0.00099 Score=57.73 Aligned_cols=98 Identities=26% Similarity=0.340 Sum_probs=62.6
Q ss_pred CCeEEEEcCCCcHHHH-HHHHc---CCeEEEEeCChHHHHHHHHHHH-hcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 132 GSKVLDIGSGSGYLSA-LFAYM---GAKVYAIEHVKNLCKRAMKNIR-RGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~-~la~~---~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
..+|+=||||.=.+|. .+++. +..|+++|+++.+.+.+++.+. .. +...++.|+.+|......+-..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----GLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------HH-SSEEEEES-GGGG-GG----SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----cccCCeEEEecchhccccccccCCEE
Confidence 3599999999776665 44543 4679999999999999999877 21 35678999999987544333679999
Q ss_pred Eecchhh-------hHHHHHHHhccCCcEEEEEe
Q psy7837 207 YISQAIR-------DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 207 ~~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 233 (299)
+..+... .+.+++.+.++||..+++-.
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9887653 57789999999999888863
No 353
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.48 E-value=0.00046 Score=57.96 Aligned_cols=56 Identities=29% Similarity=0.456 Sum_probs=45.7
Q ss_pred HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.+++.+. ..++.+|||+|||+|.++..+++..+..++++++|+++.+++.++++..
T Consensus 30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 3344443 4578999999999999999999888655799999999999998887664
No 354
>KOG2671|consensus
Probab=97.47 E-value=0.00024 Score=62.25 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=82.2
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHH-------HHHHHHHhcCCcccCCCCeEEEEcCCCCC-C
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCK-------RAMKNIRRGAPAIALAENFEFVCADGRRG-Y 197 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~-------~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~ 197 (299)
.+...+|+-|.|--.|||.+....+..|+-|+|.|++=.++. ..+.|+++++ ....-+.+..+|.... +
T Consensus 203 ~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg---~~~~fldvl~~D~sn~~~ 279 (421)
T KOG2671|consen 203 QAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG---SSSQFLDVLTADFSNPPL 279 (421)
T ss_pred hhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC---CcchhhheeeecccCcch
Confidence 345688999999999999999999999999999999988776 3566777752 1234467778887753 3
Q ss_pred CCCCCeeEEEecchhh---------------------------------------hHHHHHHHhccCCcEEEEEecCC
Q psy7837 198 PDAAPYDVIYISQAIR---------------------------------------DIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 198 ~~~~~fD~v~~~~~~~---------------------------------------~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
-....||.|+|+++.- .+..-..++|..||++++-.+..
T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 3346899999998731 12234678999999999977754
No 355
>KOG1270|consensus
Probab=97.46 E-value=0.00015 Score=61.37 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=37.4
Q ss_pred CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
|.+|||+|||+|-++.-|++.-. .|.|+|.++.+++.|+.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 58899999999999999998753 699999999999999987
No 356
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.46 E-value=0.00051 Score=58.75 Aligned_cols=55 Identities=33% Similarity=0.417 Sum_probs=43.8
Q ss_pred HHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 119 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
-...|.....+.||.+|+|.|+|+|.++..+++. ...|+..|..++..+.|++|+
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~ 85 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNF 85 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHH
Confidence 3456777888999999999999999999999986 358999999999999999984
No 357
>PRK06922 hypothetical protein; Provisional
Probab=97.46 E-value=0.00047 Score=66.20 Aligned_cols=49 Identities=16% Similarity=0.458 Sum_probs=42.5
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.++.+|||+|||+|.++..+++.. +.+.++++|+++.+++.++++...
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~ 464 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN 464 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh
Confidence 4578999999999999999888875 468999999999999999877643
No 358
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.43 E-value=0.00014 Score=60.34 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=46.6
Q ss_pred cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
.+-|.+.+.++..+. ..+=.++||+|||+|-.+..+-.... ++.|+|+|+.|++.|.+.
T Consensus 108 Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 108 YSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEK 166 (287)
T ss_pred CccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhc
Confidence 345666666666655 44567999999999999999988775 599999999999988654
No 359
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.43 E-value=0.0004 Score=60.37 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=37.3
Q ss_pred CCCCEEEEEccCCCH----HHHHHHHHhCC----CceEEEEeCCHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGY----LTTLFGAMVGI----SGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 66 ~~g~~vldiG~G~G~----~~~~la~~~~~----~g~v~~~d~~~~~~~~a~~~l 112 (299)
.++.+|||+|||+|. ++..+++.... +.+++|+|+++.+++.|++.+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 355799999999996 45566665432 468999999999999999865
No 360
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.42 E-value=0.00048 Score=64.27 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=48.1
Q ss_pred cchHHHHHHHHhcc--CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~--~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.....+++.+... +.++++|||+|||+|.++..+++.. .+++++|+++.+++.+++++..
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~ 336 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL 336 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH
Confidence 33444455544432 4678899999999999999999864 3799999999999999998865
No 361
>KOG1331|consensus
Probab=97.41 E-value=0.00015 Score=62.21 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=75.6
Q ss_pred hhcccCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCCCCCCCCCe
Q psy7837 125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRRGYPDAAPY 203 (299)
Q Consensus 125 ~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~f 203 (299)
|+.....+..++|+|||.|-.+..- ..+-++++|++...+..+++. +. ....+|+...+....+|
T Consensus 39 fl~~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~ 104 (293)
T KOG1331|consen 39 FLDSQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESF 104 (293)
T ss_pred HHhccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCcc
Confidence 3444456889999999998765433 345699999999888777543 22 56778888777777899
Q ss_pred eEEEecchhhhHH---------HHHHHhccCCcEEEEEecCC
Q psy7837 204 DVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 204 D~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~ 236 (299)
|.++...+++|+. +++.+.|+|||...+.+...
T Consensus 105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999988765 58899999999988876654
No 362
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.41 E-value=0.00058 Score=53.43 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=43.8
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
..+...|+|+|||.||++..++..+ .++-+++++|.++.+.+.+.+.....
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~ 76 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKL 76 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHh
Confidence 3678899999999999999999954 34569999999999999988887764
No 363
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.40 E-value=1.3e-05 Score=58.50 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=35.8
Q ss_pred EEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 72 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 72 ldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
||+|||+|.++..+.+.. +..+++++|+++.+++.+++++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~ 42 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAE 42 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHH
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh
Confidence 799999999999999887 568999999999999888888876
No 364
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.39 E-value=0.00069 Score=61.55 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=42.5
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+..+||||||+|.++..+|+.. ++..++|+|+++.+++.+.+.+..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~ 168 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL 168 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH
Confidence 456789999999999999999987 568999999999999999888765
No 365
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.37 E-value=0.00052 Score=57.17 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=43.1
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
+..+......++||||||++|+.++.+++. +.+++.+|.++...+.|++++
T Consensus 37 L~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~ 90 (205)
T PF01596_consen 37 LQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENF 90 (205)
T ss_dssp HHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHH
Confidence 445555677899999999999999999975 679999999999999998873
No 366
>KOG3420|consensus
Probab=97.36 E-value=0.00036 Score=53.70 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=56.9
Q ss_pred ccccccccCCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 41 NIGHNAFMESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 41 ~~~~~~~~~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+...|...+|++.+.|+..+.... -.|..++|+|||+|.++..++.. ....+.|+|++++.++..+++..+
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeE 93 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEE 93 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHH
Confidence 3445677778999888888876534 46889999999999998554433 346899999999999999998877
No 367
>KOG1269|consensus
Probab=97.36 E-value=0.0003 Score=63.55 Aligned_cols=104 Identities=25% Similarity=0.264 Sum_probs=82.3
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
....++..++|+|||-|......+.. ++.+++++.++.....+....... .......++.+|....+.+++.||.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~----~l~~k~~~~~~~~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA----YLDNKCNFVVADFGKMPFEDNTFDG 181 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH----HhhhhcceehhhhhcCCCCccccCc
Confidence 34567779999999999999999988 478999999998887776655432 2344555688888888888899999
Q ss_pred EEecchhhh------HHHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIRD------IPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~~------~~~~~~~~L~~gG~lv~~~~ 234 (299)
+.+..+..+ +.+++.++++|||..+....
T Consensus 182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 988776644 44799999999999998643
No 368
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.36 E-value=0.00069 Score=57.50 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=43.9
Q ss_pred HHHHHHHhccC-CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 55 ~~~~~~l~~~~-~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
..+++.+.... ..+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++..+.
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC
Confidence 44445444321 345789999999999999998875 45779999999999988877653
No 369
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.34 E-value=0.00046 Score=56.74 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=72.2
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY-- 197 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 197 (299)
......+.++.+|||+|||+|.++..+++. ..+++++|+++.+ . ..++.++++|..+..
T Consensus 24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHH
Confidence 344556688999999999999999988765 2469999999854 1 135778888876531
Q ss_pred ------CCCCCeeEEEecchh-----------------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 198 ------PDAAPYDVIYISQAI-----------------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 198 ------~~~~~fD~v~~~~~~-----------------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
...++||+|+++... ..+.+.+.+.|+|||++++.....
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 234679999986531 234567899999999999976443
No 370
>PLN02672 methionine S-methyltransferase
Probab=97.34 E-value=0.00062 Score=69.29 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=55.9
Q ss_pred ccccccccccccCCcchHHHHHHHHhccC---CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 37 DIPHNIGHNAFMESPSDHCLVLELLSGHL---KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 37 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~---~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
...+.+..+..+..|.. ..+++.|.... .++.+|||+|||+|..+..+++... ..+++++|+++.+++.|++++.
T Consensus 86 ~l~~~V~p~VLIPRpeT-E~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 86 KLTMMEIPSIFIPEDWS-FTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred CCceeeCCCcccCchhH-HHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 34455556666666665 34455553211 1356899999999999999998864 4689999999999999999986
Q ss_pred H
Q psy7837 114 A 114 (299)
Q Consensus 114 ~ 114 (299)
.
T Consensus 164 ~ 164 (1082)
T PLN02672 164 L 164 (1082)
T ss_pred H
Confidence 5
No 371
>KOG3191|consensus
Probab=97.33 E-value=0.00041 Score=55.54 Aligned_cols=47 Identities=30% Similarity=0.490 Sum_probs=42.5
Q ss_pred CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 68 g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
-.-++|||||||..+.+|++..++.....+.|+++...+..++....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~ 90 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC 90 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh
Confidence 55689999999999999999999989999999999999988777665
No 372
>KOG3201|consensus
Probab=97.30 E-value=0.0002 Score=56.09 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCC-CcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC--CCCCCCCCee
Q psy7837 130 VYGSKVLDIGSG-SGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR--RGYPDAAPYD 204 (299)
Q Consensus 130 ~~~~~vLDiG~G-~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD 204 (299)
..|.+|||+|.| +|..++.+|.. ...|..+|-++..++..++....|-. .....+.+...+.. +...+...||
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~--s~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA--SSLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc--cccceehhhHHHHhhhHHHHhhCccc
Confidence 347899999999 77777777766 45699999999999999887655311 12233323333322 2223446899
Q ss_pred EEEecchh------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 205 VIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 205 ~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+|++..++ ..+.+.+..+|+|.|.-++..|-..
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 99998775 3466789999999999777666544
No 373
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00083 Score=56.86 Aligned_cols=53 Identities=34% Similarity=0.413 Sum_probs=46.5
Q ss_pred HHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc-C--CeEEEEeCChHHHHHHHHHH
Q psy7837 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYM-G--AKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 121 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~-~--~~v~~~D~~~~~~~~a~~~~ 173 (299)
..|.....+.+|.+|+|.|+|||.++..+++. | .+|+..|+.+...+.|++|+
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl 139 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHH
Confidence 34566678899999999999999999999975 3 57999999999999999984
No 374
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.29 E-value=0.00074 Score=57.03 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=39.4
Q ss_pred CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+|||+|||+|.++..+++..+ ..+++++|+++.+++.+++++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~ 45 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRA 45 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence 3799999999999999988763 46899999999999999988765
No 375
>KOG3178|consensus
Probab=97.28 E-value=0.0037 Score=55.39 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecc
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 210 (299)
.-...+|+|.|.|..+..+...-..+-+++.+...+..++..+. ..++.+.+|..+..|. -|+|++--
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P~---~daI~mkW 244 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTPK---GDAIWMKW 244 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc---------CCcceecccccccCCC---cCeEEEEe
Confidence 34789999999999999998866669999999888777766532 3588899999877444 46998877
Q ss_pred hhhhH--------HHHHHHhccCCcEEEEEec
Q psy7837 211 AIRDI--------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 211 ~~~~~--------~~~~~~~L~~gG~lv~~~~ 234 (299)
+++++ .++++..|+|+|.+++...
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77544 4688999999999999876
No 376
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.24 E-value=0.0012 Score=58.68 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=41.7
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++++.+|||+|||+|.++..+++.. ++.+++++|. +.+++.+++++..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~ 194 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAE 194 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHh
Confidence 6788999999999999999999887 4578999997 7888888888765
No 377
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.24 E-value=0.00089 Score=62.36 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=40.9
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHH
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~ 172 (299)
.....++.+|||+|||+|..+..+++.. ..|+++|.++.+++.++++
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n 287 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVREN 287 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 3355789999999999999999998874 5899999999999999875
No 378
>KOG2352|consensus
Probab=97.22 E-value=0.0027 Score=58.51 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=80.0
Q ss_pred ccCCCC-eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 128 HLVYGS-KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 128 ~~~~~~-~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
.+.+.. +++.+|||.-.+...+..-|.. ++.+|.|+..++.....-.. ......+...|......+.++||+
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~------~~~~~~~~~~d~~~l~fedESFdi 117 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK------ERPEMQMVEMDMDQLVFEDESFDI 117 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc------CCcceEEEEecchhccCCCcceeE
Confidence 344555 9999999999999999998875 99999999998887665322 345678889999988888899999
Q ss_pred EEecchhhhH----------------HHHHHHhccCCcEEEEEec
Q psy7837 206 IYISQAIRDI----------------PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 206 v~~~~~~~~~----------------~~~~~~~L~~gG~lv~~~~ 234 (299)
|+.-+.++++ ..+++++|++||+.+....
T Consensus 118 VIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 118 VIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9987665322 2478999999999777655
No 379
>PRK04148 hypothetical protein; Provisional
Probab=97.22 E-value=0.0013 Score=50.51 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=53.2
Q ss_pred CCCCEEEEEccCCCH-HHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 66 KYGDKVLEIGTGSGY-LTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 66 ~~g~~vldiG~G~G~-~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
..+.+++|||||+|. ++..|++. | ..|+++|+++..++.+++.... ..+-|+..-+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~~~~------------------~v~dDlf~p~-- 71 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKLGLN------------------AFVDDLFNPN-- 71 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHhCCe------------------EEECcCCCCC--
Confidence 356899999999996 77777754 3 3799999999988877655322 2233333221
Q ss_pred HHHHHHHcCCe-EEEEeCChHHHHHHHHHHHh
Q psy7837 145 LSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 145 ~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~ 175 (299)
..+. .++. ++++-.-+++.....+.+..
T Consensus 72 --~~~y-~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 72 --LEIY-KNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred --HHHH-hcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 1112 2444 78887766666655555444
No 380
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.22 E-value=0.0013 Score=59.71 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=48.1
Q ss_pred cchHHHHHHHHhccCC-CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHLK-YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~-~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.....+++.+.+.+. .+.+|||++||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 180 ~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHH
Confidence 4445566666555443 235799999999999999998763 799999999999999998866
No 381
>PHA03411 putative methyltransferase; Provisional
Probab=97.22 E-value=0.0013 Score=56.76 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=46.6
Q ss_pred cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Q psy7837 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l 112 (299)
.|++...+.+....+ + ..+.+.+|||+|||+|.++..++...+ ..+++++|+++.+++.+++++
T Consensus 45 ~G~FfTP~~i~~~f~--~--~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--I--DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred ceeEcCCHHHHHHHH--h--ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC
Confidence 466655555543321 1 245567999999999999988877643 258999999999999888754
No 382
>PTZ00146 fibrillarin; Provisional
Probab=97.22 E-value=0.0008 Score=58.71 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=36.6
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAM 170 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~ 170 (299)
.+.++.+|||+|||+|+++..++... ..|+++|+++.+.+...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl 174 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence 46789999999999999999999873 57999999988766543
No 383
>PLN02476 O-methyltransferase
Probab=97.20 E-value=0.0011 Score=57.62 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=44.7
Q ss_pred HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
.+..+....+.++|||+||++|+.++.++.. +..++++|.+++..+.|++++
T Consensus 109 lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~ 163 (278)
T PLN02476 109 LLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYY 163 (278)
T ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 4556667778999999999999999999874 457999999999999999873
No 384
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0011 Score=55.44 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=44.8
Q ss_pred HHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
.+..+....+.++|||||++.|+.++.++.. ..+++.+|+++++.+.|++|+
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~ 104 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL 104 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 4555666678999999999999999999865 468999999999999999983
No 385
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.19 E-value=0.0011 Score=60.51 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 50 SPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 50 ~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+...+.+++.+...+ .++.+|||++||+|.++..++... .+++++|+++..++.++++...
T Consensus 214 n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~ 277 (374)
T TIGR02085 214 NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM 277 (374)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH
Confidence 4444555555544332 467899999999999999998543 4799999999999999999876
No 386
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.18 E-value=0.00081 Score=56.91 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~ 107 (299)
..|..|||+|||+|.+|..+++. | ..+++++|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence 47889999999999999999986 2 3689999999977654
No 387
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.18 E-value=0.0013 Score=55.51 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=36.3
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~ 109 (299)
+.++.+|||+|||.|..+.+|++.. -.|+|+|+++..++.+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHH
Confidence 4677899999999999999999753 36999999999999764
No 388
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.18 E-value=0.00082 Score=56.28 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeC
Q psy7837 118 TYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEH 161 (299)
Q Consensus 118 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~ 161 (299)
++.+.......+.++.+|||+|||+|.++..+++.. ..|+++|+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi 84 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDI 84 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEec
Confidence 333334444446788999999999999999988763 47999985
No 389
>KOG1709|consensus
Probab=97.17 E-value=0.0069 Score=49.96 Aligned_cols=101 Identities=23% Similarity=0.276 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeEE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v 206 (299)
.+|.+||.+|-|-|...-.+.+... +-+-||.+|..++..+...-. ...|+.+..+-..+.. .+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~------ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR------EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc------cccceEEEecchHhhhccccccCccee
Confidence 6799999999999999988888764 588899999999988886433 2357777766554322 234679999
Q ss_pred Eecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 207 YISQAI------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 207 ~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+-+.-. .++.+.+.++|||+|.+-......
T Consensus 174 ~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 174 YYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred EeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 987652 345578999999999988876543
No 390
>KOG1661|consensus
Probab=97.15 E-value=0.0008 Score=55.15 Aligned_cols=48 Identities=50% Similarity=0.814 Sum_probs=42.1
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc----CCeEEEEeCChHHHHHHHHHHHh
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM----GAKVYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~----~~~v~~~D~~~~~~~~a~~~~~~ 175 (299)
++.||.+.||+|+|||+++.+++++ |..++|+|.-+++++..++|+..
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHh
Confidence 3567999999999999999999977 33459999999999999999876
No 391
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.14 E-value=0.0012 Score=57.35 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=48.5
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHH
Q psy7837 92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKR 168 (299)
Q Consensus 92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~ 168 (299)
.|.++-.|.+..+...+ ....++.+|||+|||+|..+..++.. ...|+++|+++.+++.
T Consensus 50 ~G~~~~qd~~s~~~~~~------------------l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~ 111 (264)
T TIGR00446 50 SGLYYIQEASSMIPPLA------------------LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKV 111 (264)
T ss_pred CCeEEEECHHHHHHHHH------------------hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 46677777655544321 23457899999999999999988775 3579999999999999
Q ss_pred HHHH
Q psy7837 169 AMKN 172 (299)
Q Consensus 169 a~~~ 172 (299)
++++
T Consensus 112 ~~~n 115 (264)
T TIGR00446 112 LIAN 115 (264)
T ss_pred HHHH
Confidence 9876
No 392
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.13 E-value=0.0011 Score=57.66 Aligned_cols=64 Identities=30% Similarity=0.396 Sum_probs=54.2
Q ss_pred ccc-cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 45 NAF-MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 45 ~~~-~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
||+ +.++.+...+++.+. +.+++.|+|+|+|.|.+|..|.+.. .+++++|+++.+.+..++.+.
T Consensus 9 gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT
T ss_pred CcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh
Confidence 443 357788888888887 7799999999999999999999887 479999999999888877654
No 393
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.11 E-value=0.0013 Score=61.55 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=40.2
Q ss_pred hcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
.....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 294 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 335567899999999999999888764 45899999999999999876
No 394
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.11 E-value=0.0015 Score=60.85 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=80.7
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCCC--CCC
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGYP--DAA 201 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~--~~~ 201 (299)
....++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++++. +.. .+.+..+|...... ..+
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-----g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-----GLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCeEEEEecccccccccccccc
Confidence 34567899999999999999998876 368999999999999999999883 332 33446666554322 346
Q ss_pred CeeEEEecchhh----------------------------hHHHHHHHhccCCcEEEEEecCCC
Q psy7837 202 PYDVIYISQAIR----------------------------DIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 202 ~fD~v~~~~~~~----------------------------~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
+||.|+++++.. .+.+++.++|||||+|++++-+..
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 799999876421 244578899999999999876553
No 395
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.11 E-value=0.0027 Score=51.83 Aligned_cols=66 Identities=26% Similarity=0.233 Sum_probs=48.1
Q ss_pred ccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCc--------eEEEEeCCHHHHHHHHHHHHH
Q psy7837 47 FMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG--------KVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 47 ~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g--------~v~~~d~~~~~~~~a~~~l~~ 114 (299)
....|.+.+.++.... +++|+.|||--||+|.+....+.....-- .++|+|+++.+++.++.++..
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 3456777777776555 89999999999999999887766554322 388999999999999999987
No 396
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.10 E-value=0.01 Score=51.12 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=63.4
Q ss_pred hhhcccCCCCeEEEEcCC--CcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC--
Q psy7837 124 NFYGHLVYGSKVLDIGSG--SGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG-- 196 (299)
Q Consensus 124 ~~~~~~~~~~~vLDiG~G--~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-- 196 (299)
++++.-..=...|||||| +-....++++. .++|+-+|.+|..+..++..+..+ ......++.+|+.+.
T Consensus 61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRDPEA 135 (267)
T ss_dssp HHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-HHH
T ss_pred HHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCCHHH
Confidence 333333344689999999 44455666654 789999999999999999988662 223489999998841
Q ss_pred ---------CCCCCCeeEEEecchhhhHH---------HHHHHhccCCcEEEEEecCCC
Q psy7837 197 ---------YPDAAPYDVIYISQAIRDIP---------WHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 197 ---------~~~~~~fD~v~~~~~~~~~~---------~~~~~~L~~gG~lv~~~~~~~ 237 (299)
...-..-=.+++..++++++ ..+.+.|.||..|+++.....
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 11111122455666665544 578999999999999987654
No 397
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.09 E-value=0.0016 Score=60.70 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=39.8
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
...++.+|||+|||+|..+..++.. +.+|+++|+++.+++.++++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n 281 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH 281 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence 4567899999999999999988875 56899999999999999876
No 398
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.08 E-value=0.0033 Score=51.79 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 56 ~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.++..+.. ...|.+|||++||+|.++..++.... .+++++|.++..++.+++++..
T Consensus 39 a~f~~l~~-~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~ 94 (189)
T TIGR00095 39 LFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLAL 94 (189)
T ss_pred HHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHH
Confidence 34444432 34689999999999999999888753 3799999999999999999876
No 399
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.08 E-value=0.0019 Score=58.78 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHhccCCC-CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 50 SPSDHCLVLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 50 ~p~~~~~~~~~l~~~~~~-g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+...+.+++.+.+.+.+ +.+|||++||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHH
Confidence 344456677666654543 35799999999999999998753 799999999999999998866
No 400
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.06 E-value=0.0017 Score=60.87 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=39.5
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
...++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++|
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n 294 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 4567899999999999999998875 46899999999999998875
No 401
>PLN03075 nicotianamine synthase; Provisional
Probab=96.99 E-value=0.003 Score=55.35 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCCcHHHH-HHH-Hc--CCeEEEEeCChHHHHHHHHH
Q psy7837 131 YGSKVLDIGSGSGYLSA-LFA-YM--GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~-~la-~~--~~~v~~~D~~~~~~~~a~~~ 172 (299)
++++|+|||||.|.++. .++ .. +.+++++|+++.+++.|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~ 168 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRL 168 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 78999999999775543 343 33 56799999999999999876
No 402
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.98 E-value=0.0037 Score=48.67 Aligned_cols=44 Identities=25% Similarity=0.435 Sum_probs=38.8
Q ss_pred EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.++|+|||.|+++..+++.. +.++++++|.++.+.+..++++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHH
Confidence 37999999999999998764 456999999999999999988875
No 403
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.95 E-value=0.0028 Score=55.30 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=41.4
Q ss_pred CcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Q psy7837 50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107 (299)
Q Consensus 50 ~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~ 107 (299)
+-..+..+...+. -..|.+|||||||.||.+..++..-. ..|+|+|.+....-.
T Consensus 100 Sd~KW~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 100 SDWKWDRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQ 153 (315)
T ss_pred ccchHHHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHH
Confidence 3445666666664 35789999999999999988877643 479999999887654
No 404
>KOG1227|consensus
Probab=96.94 E-value=0.00071 Score=58.34 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=82.6
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHH-HHHHcCCe-EEEEeCChHHHHHH
Q psy7837 92 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSA-LFAYMGAK-VYAIEHVKNLCKRA 169 (299)
Q Consensus 92 ~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~-~la~~~~~-v~~~D~~~~~~~~a 169 (299)
+|..+.+|.-..|.++....-+ .+...-...+..|+|+.+|-||+++ .+...|+. |+++|.+|..++..
T Consensus 164 NGI~~~~d~t~~MFS~GN~~EK---------~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaL 234 (351)
T KOG1227|consen 164 NGITQIWDPTKTMFSRGNIKEK---------KRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEAL 234 (351)
T ss_pred cCeEEEechhhhhhhcCcHHHH---------HHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHH
Confidence 5778888877777654332111 1222223456899999999999999 66777765 99999999999999
Q ss_pred HHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhh--hHHHHHHHhccCCc
Q psy7837 170 MKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIR--DIPWHIVDQLKLGG 227 (299)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~--~~~~~~~~~L~~gG 227 (299)
+++++.| ....+...+.+|-...-+ ....|.|....... .--..+..+|+|.|
T Consensus 235 rR~~~~N----~V~~r~~i~~gd~R~~~~-~~~AdrVnLGLlPSse~~W~~A~k~Lk~eg 289 (351)
T KOG1227|consen 235 RRNAEAN----NVMDRCRITEGDNRNPKP-RLRADRVNLGLLPSSEQGWPTAIKALKPEG 289 (351)
T ss_pred HHHHHhc----chHHHHHhhhccccccCc-cccchheeeccccccccchHHHHHHhhhcC
Confidence 9999885 345566666666554333 36788888754331 11234666777744
No 405
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.93 E-value=0.0025 Score=59.54 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=40.1
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHH
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~ 172 (299)
....++.+|||+|||+|..+..+++. ...|+++|+++.+++.++++
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n 296 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHH
Confidence 34567899999999999999998876 35799999999999999876
No 406
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.92 E-value=0.0027 Score=56.47 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=40.5
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.++||||||+|.....++.... ..+++++|+++..++.|++++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHh
Confidence 467999999999988888876543 46899999999999999999987
No 407
>PHA01634 hypothetical protein
Probab=96.90 E-value=0.0062 Score=45.93 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHh
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~ 175 (299)
..+++|+|||++.|..++.++-+|++ |+++|.++...+..+++++.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 45899999999999999999999986 99999999999999998876
No 408
>KOG1501|consensus
Probab=96.87 E-value=0.0023 Score=58.03 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=49.7
Q ss_pred eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 194 (299)
.|||||+|||.++...++.|++ |+++|....|.+.|++....+ +..+++.++.--..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kn----g~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKN----GMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcC----CCccceeeeccccc
Confidence 6999999999999999999876 999999999999999999886 67788888765433
No 409
>KOG1499|consensus
Probab=96.85 E-value=0.0023 Score=56.60 Aligned_cols=48 Identities=35% Similarity=0.480 Sum_probs=40.4
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++-.+..|||+|||+|.++++.++... .+|+++|.+... +.+++.+..
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~ 104 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKD 104 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHh
Confidence 356889999999999999999998774 499999998776 777777654
No 410
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.83 E-value=0.0045 Score=52.58 Aligned_cols=47 Identities=28% Similarity=0.431 Sum_probs=40.3
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~ 92 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE 92 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH
Confidence 4578899999999999999888753 4699999999999998887754
No 411
>KOG3987|consensus
Probab=96.80 E-value=0.0003 Score=57.43 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEec
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 209 (299)
..+.++||+|+|.|-.+..++..-..|++.|.|..|....+++ +..++.. ......+-+||+|.|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk------------~ynVl~~--~ew~~t~~k~dli~cl 176 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK------------NYNVLTE--IEWLQTDVKLDLILCL 176 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc------------CCceeee--hhhhhcCceeehHHHH
Confidence 3457999999999999999998888899999999999888764 2222211 1111122459999998
Q ss_pred chhh------hHHHHHHHhccC-CcEEEEEe
Q psy7837 210 QAIR------DIPWHIVDQLKL-GGRMLFIK 233 (299)
Q Consensus 210 ~~~~------~~~~~~~~~L~~-gG~lv~~~ 233 (299)
+.+. .+.+.++.+|+| .|+.++..
T Consensus 177 NlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 177 NLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 8775 355788999999 88777653
No 412
>PLN02366 spermidine synthase
Probab=96.79 E-value=0.027 Score=50.00 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=57.1
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGY 144 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~ 144 (299)
.....+||++|||.|.....+++. ....++..+|+++.+++.+++.+... .....+.+ +.+=+|.|.
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-----------~~~~~dpR-v~vi~~Da~ 155 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-----------AVGFDDPR-VNLHIGDGV 155 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-----------ccccCCCc-eEEEEChHH
Confidence 356789999999999999988865 23468999999999999999987651 00111222 244456654
Q ss_pred HHHHHH-HcCCeEEEEeCCh
Q psy7837 145 LSALFA-YMGAKVYAIEHVK 163 (299)
Q Consensus 145 ~~~~la-~~~~~v~~~D~~~ 163 (299)
.-+.-. ....+++.+|.+.
T Consensus 156 ~~l~~~~~~~yDvIi~D~~d 175 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSD 175 (308)
T ss_pred HHHhhccCCCCCEEEEcCCC
Confidence 433211 2235677888754
No 413
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.77 E-value=0.0044 Score=51.35 Aligned_cols=124 Identities=15% Similarity=0.034 Sum_probs=79.3
Q ss_pred CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC-CeEE
Q psy7837 79 GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG-AKVY 157 (299)
Q Consensus 79 G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~v~ 157 (299)
|--+...|...|. ..--|-|.+..++++.++..... ......-++|||||=+...... ..+ .+|+
T Consensus 11 Gl~~YQ~AS~~Gq-~~~RGGdSSK~lv~wL~~~~~~~-----------~~~~~~lrlLEVGals~~N~~s--~~~~fdvt 76 (219)
T PF11968_consen 11 GLEAYQRASKQGQ-SKDRGGDSSKWLVEWLKELGVRP-----------KNGRPKLRLLEVGALSTDNACS--TSGWFDVT 76 (219)
T ss_pred CHHHHHHHHHhcC-CCCCCCchhHHHHHHhhhhcccc-----------ccccccceEEeecccCCCCccc--ccCceeeE
Confidence 5556666766664 33345566666666555544331 1112236999999986654443 233 3499
Q ss_pred EEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCC---CCCCeeEEEecchhhh---------HHHHHHHhccC
Q psy7837 158 AIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYP---DAAPYDVIYISQAIRD---------IPWHIVDQLKL 225 (299)
Q Consensus 158 ~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~---------~~~~~~~~L~~ 225 (299)
.||+++ ..-.+.+.|+...+. +.+.||+|.+..++.- +..++.+.|++
T Consensus 77 ~IDLns--------------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~ 136 (219)
T PF11968_consen 77 RIDLNS--------------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKP 136 (219)
T ss_pred EeecCC--------------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 999865 234456777775332 3478999999888753 44688999999
Q ss_pred CcE-----EEEEecCC
Q psy7837 226 GGR-----MLFIKGHE 236 (299)
Q Consensus 226 gG~-----lv~~~~~~ 236 (299)
+|. |++..|.+
T Consensus 137 ~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 137 PGLSLFPSLFLVLPLP 152 (219)
T ss_pred CCccCcceEEEEeCch
Confidence 999 88877643
No 414
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.77 E-value=0.0045 Score=54.44 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=60.5
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---CCC-CC
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---YPD-AA 201 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~ 201 (299)
..++..++|.+||.|..+..+++.. .+|+|+|.++.+++.+++++.. ..++.++++|.... ... ..
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHHHHHHHHHcCCC
Confidence 3578899999999999999998873 6899999999999999987632 35899999988742 111 12
Q ss_pred CeeEEEecch
Q psy7837 202 PYDVIYISQA 211 (299)
Q Consensus 202 ~fD~v~~~~~ 211 (299)
++|.|+++..
T Consensus 90 ~vDgIl~DLG 99 (296)
T PRK00050 90 KVDGILLDLG 99 (296)
T ss_pred ccCEEEECCC
Confidence 6999988764
No 415
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.77 E-value=0.031 Score=46.22 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=43.8
Q ss_pred hHHHHHHHHhccCC--CCCEEEEEccCCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHH
Q psy7837 53 DHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGIS-GKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 53 ~~~~~~~~l~~~~~--~g~~vldiG~G~G~~~~~la~~~~~~-g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+..-++++....+. ..-++.|-+||+||+-..+.-.-+.. ..+++.|+++..++.|++++.-
T Consensus 35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 34444454443332 23367899999999999988766654 6799999999999999999864
No 416
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.77 E-value=0.0034 Score=52.90 Aligned_cols=45 Identities=29% Similarity=0.495 Sum_probs=38.7
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.+|||+|||+|.++..+++.. .+++++|.++.+++.+++++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~ 89 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK 89 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 47899999999999999888753 3599999999999999887765
No 417
>KOG1540|consensus
Probab=96.75 E-value=0.0039 Score=52.79 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=20.8
Q ss_pred ccCCCCeEEEEcCCCcHHHHHHHHc
Q psy7837 128 HLVYGSKVLDIGSGSGYLSALFAYM 152 (299)
Q Consensus 128 ~~~~~~~vLDiG~G~G~~~~~la~~ 152 (299)
....+.++||++||||-++.-+.+.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~ 121 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRH 121 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHh
Confidence 3456789999999999999888765
No 418
>PRK00811 spermidine synthase; Provisional
Probab=96.73 E-value=0.0059 Score=53.62 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=40.7
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
....+||++|||.|..+..+.+..+ ..++..+|+++.+++.+++.+..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~ 122 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPE 122 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHH
Confidence 4668999999999999998876422 35899999999999999998765
No 419
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.73 E-value=0.005 Score=56.59 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+.+|.+|||+|||+|.++..++. +...+++++|+++.+++.+++++..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~ 265 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVEL 265 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHH
Confidence 45689999999999999876553 2345899999999999999999876
No 420
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.72 E-value=0.011 Score=50.11 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=66.2
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
..+..+|+|||||.-.+++.+... +..++++|++..+++.....+.. ...+..+...|.....+. ...|+.
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~------l~~~~~~~v~Dl~~~~~~-~~~Dla 175 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV------LGVPHDARVRDLLSDPPK-EPADLA 175 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH------TT-CEEEEEE-TTTSHTT-SEESEE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh------hCCCcceeEeeeeccCCC-CCcchh
Confidence 345789999999999998877655 57899999999999999988766 346778888888865443 568999
Q ss_pred EecchhhhHHH-------HHHHhccCCcEEEEEecC
Q psy7837 207 YISQAIRDIPW-------HIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 207 ~~~~~~~~~~~-------~~~~~L~~gG~lv~~~~~ 235 (299)
++.=.++-+.+ ++.+.++ .=.++++++.
T Consensus 176 LllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 176 LLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPT 210 (251)
T ss_dssp EEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES
T ss_pred hHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccc
Confidence 98776655443 2333332 2355666654
No 421
>KOG0024|consensus
Probab=96.72 E-value=0.053 Score=47.72 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=73.9
Q ss_pred hccCCCCCEEEEEccCC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcC
Q psy7837 62 SGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGS 140 (299)
Q Consensus 62 ~~~~~~g~~vldiG~G~-G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~ 140 (299)
...+++|.+||-+|+|+ |-.+...++.+|. .+|+.+|..+.-++.|++ +.
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~G--------------------------- 214 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FG--------------------------- 214 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hC---------------------------
Confidence 34589999999999998 8888888888874 678888888887777776 21
Q ss_pred CCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEecchhhhHHHHHH
Q psy7837 141 GSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIV 220 (299)
Q Consensus 141 G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~ 220 (299)
++++--.......+..++..+. ......+|+.|--..++...+...
T Consensus 215 -------------a~~~~~~~~~~~~~~~~~~v~~---------------------~~g~~~~d~~~dCsG~~~~~~aai 260 (354)
T KOG0024|consen 215 -------------ATVTDPSSHKSSPQELAELVEK---------------------ALGKKQPDVTFDCSGAEVTIRAAI 260 (354)
T ss_pred -------------CeEEeeccccccHHHHHHHHHh---------------------hccccCCCeEEEccCchHHHHHHH
Confidence 2222111111122222222222 111133888888777888888889
Q ss_pred HhccCCcEEEEEecCC
Q psy7837 221 DQLKLGGRMLFIKGHE 236 (299)
Q Consensus 221 ~~L~~gG~lv~~~~~~ 236 (299)
..++.||.+++.....
T Consensus 261 ~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 261 KATRSGGTVVLVGMGA 276 (354)
T ss_pred HHhccCCEEEEeccCC
Confidence 9999999977765443
No 422
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.69 E-value=0.0091 Score=46.25 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=53.4
Q ss_pred eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC--CCCCCCCeeEEEecchh---------------hhHHH
Q psy7837 155 KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR--GYPDAAPYDVIYISQAI---------------RDIPW 217 (299)
Q Consensus 155 ~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~~---------------~~~~~ 217 (299)
+|+++|+.+++++..+++++.. ....+++++..+=.. ...+.+++|+++.|... -...+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~----~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA----GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT----T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc----CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 5899999999999999999884 344579988876442 12222579999988753 12336
Q ss_pred HHHHhccCCcEEEEEecCC
Q psy7837 218 HIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 218 ~~~~~L~~gG~lv~~~~~~ 236 (299)
.+.++|++||++++.+.+.
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 8899999999999987653
No 423
>PRK11524 putative methyltransferase; Provisional
Probab=96.68 E-value=0.0071 Score=53.14 Aligned_cols=46 Identities=26% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~ 175 (299)
.+|..|||..+|||+.+.+..++|.+.+|+|++++.++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999764
No 424
>KOG4058|consensus
Probab=96.67 E-value=0.021 Score=44.28 Aligned_cols=100 Identities=20% Similarity=0.158 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcCC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEEEe
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 208 (299)
.+..+.+|+|+|.|...+..++.|. ..+++|+++-++...+-..-+. +......|..-|....... .|..+++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~----g~~k~trf~RkdlwK~dl~--dy~~vvi 144 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRA----GCAKSTRFRRKDLWKVDLR--DYRNVVI 144 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHH----hcccchhhhhhhhhhcccc--ccceEEE
Confidence 5667999999999999999999995 5999999999999888776553 4567778887777654332 2444443
Q ss_pred cch---hhhHHHHHHHhccCCcEEEEEecC
Q psy7837 209 SQA---IRDIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 209 ~~~---~~~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
... +..+.+.+..-+..+..++..-.+
T Consensus 145 Fgaes~m~dLe~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 145 FGAESVMPDLEDKLRTELPANTRVVACRFP 174 (199)
T ss_pred eehHHHHhhhHHHHHhhCcCCCeEEEEecC
Confidence 333 334456777777777777765433
No 425
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.017 Score=53.67 Aligned_cols=63 Identities=29% Similarity=0.317 Sum_probs=51.4
Q ss_pred CCcchHHHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 49 ESPSDHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 49 ~~p~~~~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+...+.|++...+.+ .++++|||+=||.|.++..+|+... +|+|+|+++..++.|+++.+.
T Consensus 273 ~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~ 337 (432)
T COG2265 273 VNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAA 337 (432)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHH
Confidence 34555566666655544 5788999999999999999997664 599999999999999999876
No 426
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.61 E-value=0.0057 Score=53.91 Aligned_cols=61 Identities=30% Similarity=0.315 Sum_probs=46.4
Q ss_pred cchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
|=+...+++.|. .+++..++|..-|.|..+..+.+..++ ++++++|.++..++.+++.+..
T Consensus 6 PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~ 66 (310)
T PF01795_consen 6 PVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK 66 (310)
T ss_dssp -TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC
T ss_pred cccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh
Confidence 445678888887 889999999999999999999998877 9999999999999988877754
No 427
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.56 E-value=0.036 Score=52.55 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=45.1
Q ss_pred ccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC---CceEEEEeCCHHHHHHHHHHH
Q psy7837 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRV 112 (299)
Q Consensus 45 ~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~---~g~v~~~d~~~~~~~~a~~~l 112 (299)
|+......+...+.+.+. ..+..+|.|..||+|.+-....+.++. +...+|.|+++.....++-++
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~ 234 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNL 234 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHH
Confidence 666666666666666666 478889999999999887777766653 244566666555555555444
No 428
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.55 E-value=0.048 Score=47.51 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=39.6
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+.+||++|||+|..+..+.+.. ...++..+|+++.+++.+++.+..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~ 118 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS 118 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence 445699999999999988777653 245899999999999999987765
No 429
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.54 E-value=0.0064 Score=52.12 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=42.4
Q ss_pred HhhhcccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHH
Q psy7837 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNI 173 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~ 173 (299)
+..+......++|||||+++|+-++.+++. +.+++++|.++...+.|++++
T Consensus 71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~ 124 (247)
T PLN02589 71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI 124 (247)
T ss_pred HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 344445567889999999999999999864 568999999999999988873
No 430
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.51 E-value=0.01 Score=47.06 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 49 ESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 49 ~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
+++.+.++|..... ...|-.|||+|.|+|-+|..+.+..-++..++++|++++++..-.+...
T Consensus 32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p 94 (194)
T COG3963 32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP 94 (194)
T ss_pred CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence 45556666666665 7888999999999999999888877778899999999999987766544
No 431
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.50 E-value=0.0035 Score=51.26 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=37.3
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.-.++||+|||.|.+|..|+... .++.++|+++..++.|++++..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC
Confidence 34689999999999999999875 3799999999999999999876
No 432
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.49 E-value=0.0089 Score=49.55 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=46.8
Q ss_pred ccccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 43 ~~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.....+-+|++..-- .++...+++|+.|+|+-||.|+++..+++. ++..+|+++|+++..++..++++..
T Consensus 78 D~~kvyfs~rl~~Er-~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~l 147 (200)
T PF02475_consen 78 DLSKVYFSPRLSTER-RRIANLVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRL 147 (200)
T ss_dssp ETTTS---GGGHHHH-HHHHTC--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHH
T ss_pred ccceEEEccccHHHH-HHHHhcCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHH
Confidence 344556666653222 244445889999999999999999999874 3456899999999999999998876
No 433
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.49 E-value=0.015 Score=52.33 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=62.5
Q ss_pred ccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCCCCCCCCCe
Q psy7837 128 HLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRRGYPDAAPY 203 (299)
Q Consensus 128 ~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~f 203 (299)
...++.+||-.||| .|.++..+++. |+ +|+++|.+++.++.+++. +...+ .....+........+.+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l---------Ga~~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM---------GADKLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc---------CCcEEecCCcccHHHHhccCCCC
Confidence 34578899999886 45555666655 77 599999999888877653 11111 10011111111112358
Q ss_pred eEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837 204 DVIYISQAIRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 204 D~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
|+|+-...-....+...+.|++||++++.-.
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEEcc
Confidence 9998766655566788899999999988643
No 434
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.43 E-value=0.0073 Score=43.11 Aligned_cols=39 Identities=36% Similarity=0.607 Sum_probs=33.9
Q ss_pred EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
+++|+|||.|..+..+++ ....+++++|.++...+.+++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHH
Confidence 489999999999998887 345799999999999988875
No 435
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.40 E-value=0.012 Score=49.48 Aligned_cols=43 Identities=30% Similarity=0.314 Sum_probs=36.3
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHH
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMK 171 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~ 171 (299)
..+|..|||..||+|+.+.+..++|.+.+++|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3568999999999999999999999999999999999998864
No 436
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.34 E-value=0.015 Score=48.41 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=57.8
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCc----ccCCCCeEEEEcCCCCCCCC-
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPA----IALAENFEFVCADGRRGYPD- 199 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~----~~~~~~v~~~~~d~~~~~~~- 199 (299)
..+.++...+|+|||.|.....++.. +++ .+|||+.+...+.++...+....- .....++++..+|+......
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 35678999999999999998877644 665 999999999887776544321000 01245778888887642110
Q ss_pred --CCCeeEEEecchh--hhHH---HHHHHhccCCcEEEE
Q psy7837 200 --AAPYDVIYISQAI--RDIP---WHIVDQLKLGGRMLF 231 (299)
Q Consensus 200 --~~~fD~v~~~~~~--~~~~---~~~~~~L~~gG~lv~ 231 (299)
-..-|+|++++.. +.+. .+....||+|-+++.
T Consensus 118 ~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 0236999998764 1222 355567788777654
No 437
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.029 Score=49.75 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=74.1
Q ss_pred HHHHHHHhHHHHHHHHhhhcc---cCCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCccc
Q psy7837 108 ARKRVKAKAETYIKRINFYGH---LVYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIA 181 (299)
Q Consensus 108 a~~~l~~~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~ 181 (299)
....+.....++++.+..+.. -...+++||+|.|.|....++... . .+++-++.|+.+-+......+. .
T Consensus 87 ias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n-----v 161 (484)
T COG5459 87 IASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN-----V 161 (484)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh-----c
Confidence 333444444455555555443 345578999999999877666543 2 3477788887765554443332 2
Q ss_pred CCCCeEEEEcCCCC---CCCCCCCeeEEEecchh---------hhHHHHHHHhccCCcEEEEEecCCC
Q psy7837 182 LAENFEFVCADGRR---GYPDAAPYDVIYISQAI---------RDIPWHIVDQLKLGGRMLFIKGHED 237 (299)
Q Consensus 182 ~~~~v~~~~~d~~~---~~~~~~~fD~v~~~~~~---------~~~~~~~~~~L~~gG~lv~~~~~~~ 237 (299)
..........|+.. .++....|+++++..-+ ....+.+..+++|||.||+......
T Consensus 162 ~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 162 STEKTDWRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ccccCCCCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 22233333444432 22333567777665433 1245788999999999999886543
No 438
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.30 E-value=0.0079 Score=54.51 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=47.2
Q ss_pred CcchHHHHHHHHhccCCC-CCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 50 SPSDHCLVLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 50 ~p~~~~~~~~~l~~~~~~-g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+.....+++.+.+.+.+ +..|||+-||.|.++..+|.... +|+|+|+++..++.|++++..
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHH
Confidence 444556666666554432 23899999999999999998764 699999999999999999876
No 439
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.27 E-value=0.015 Score=50.89 Aligned_cols=69 Identities=17% Similarity=0.111 Sum_probs=54.1
Q ss_pred eEEEEcCCCcHHHHHHHHcCCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC--CCCeeEEEecc
Q psy7837 134 KVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD--AAPYDVIYISQ 210 (299)
Q Consensus 134 ~vLDiG~G~G~~~~~la~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~ 210 (299)
+|+|+.||.|.++..+.+.|.+ +.++|+++..++..+.|... .++.+|+...... ...+|+++.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----------CCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999999999999887 88999999999999888533 1456666643321 25699999988
Q ss_pred hhh
Q psy7837 211 AIR 213 (299)
Q Consensus 211 ~~~ 213 (299)
+..
T Consensus 71 PCq 73 (275)
T cd00315 71 PCQ 73 (275)
T ss_pred CCh
Confidence 753
No 440
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.23 E-value=0.012 Score=52.24 Aligned_cols=68 Identities=26% Similarity=0.265 Sum_probs=48.1
Q ss_pred cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHh------CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV------GISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~------~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
.|+......+...|.+.+. ..++++|+|.+||+|.+-..+.+.+ .....++|+|+++..+..++-++.
T Consensus 25 ~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp CGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred cceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 4566666666677777774 7889999999999999988777654 245689999999999988876653
No 441
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.22 E-value=0.02 Score=46.37 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=37.8
Q ss_pred cCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 64 ~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
....+.+|||+|||+|..+..++... ...+|+..|.++ .++..+.++..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence 46788999999999999999998884 346899999999 88888888775
No 442
>KOG3010|consensus
Probab=96.18 E-value=0.01 Score=49.82 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=38.0
Q ss_pred CCCCC-EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 65 LKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 65 ~~~g~-~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..++. ..+|+|||+|..+..+++... .|+++|.++.|++.+++....
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc
Confidence 44555 678999999988888888765 599999999999988776544
No 443
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.18 E-value=0.14 Score=45.29 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=81.2
Q ss_pred hccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcC
Q psy7837 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY-TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGS 140 (299)
Q Consensus 62 ~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~-~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~ 140 (299)
.+.+++|..|+ +|++.-+....+.+. .-.++ ..+.+...+..+ .......+...+........+.+|+-+|+
T Consensus 88 l~~l~~~~~v~-~G~~~~~~~~~~~~~---gi~~~~~~~~~~~~~~ns---~~~aegav~~a~~~~~~~l~g~kvlViG~ 160 (296)
T PRK08306 88 LELTPEHCTIF-SGIANPYLKELAKET---NRKLVELFERDDVAILNS---IPTAEGAIMMAIEHTPITIHGSNVLVLGF 160 (296)
T ss_pred HHhcCCCCEEE-EecCCHHHHHHHHHC---CCeEEEEeccchhhhhcc---HhHHHHHHHHHHHhCCCCCCCCEEEEECC
Confidence 33477786555 799988877554422 12233 222211111111 11111122222322223346899999999
Q ss_pred CC-cHHHH-HHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCCCCCCCCeeEEEecchhhhHHH
Q psy7837 141 GS-GYLSA-LFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRGYPDAAPYDVIYISQAIRDIPW 217 (299)
Q Consensus 141 G~-G~~~~-~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~v~~~~~~~~~~~ 217 (299)
|. |.... .+...|++|+.+|.++...+.++.. + ..++.. +.... -..+|+|+...+...+.+
T Consensus 161 G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~---------G---~~~~~~~~l~~~---l~~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 161 GRTGMTLARTLKALGANVTVGARKSAHLARITEM---------G---LSPFHLSELAEE---VGKIDIIFNTIPALVLTK 225 (296)
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc---------C---CeeecHHHHHHH---hCCCCEEEECCChhhhhH
Confidence 83 33333 2345599999999997765554321 1 122211 11111 145899998766555667
Q ss_pred HHHHhccCCcEEEEEecCC
Q psy7837 218 HIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 218 ~~~~~L~~gG~lv~~~~~~ 236 (299)
+..+.+++|+.++-....+
T Consensus 226 ~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKP 244 (296)
T ss_pred HHHHcCCCCcEEEEEccCC
Confidence 7888899988766444433
No 444
>KOG1271|consensus
Probab=96.15 E-value=0.016 Score=46.73 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=47.4
Q ss_pred cchHHHHHHHHhccC------CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 51 PSDHCLVLELLSGHL------KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 51 p~~~~~~~~~l~~~~------~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.....+++++|.+.. +..++|||+|||.|.+-..|++.- -++.++|+|.++..++.|.....+
T Consensus 45 ~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~ 113 (227)
T KOG1271|consen 45 EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAER 113 (227)
T ss_pred CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHh
Confidence 334467777776533 245599999999999988888753 356799999999999987765544
No 445
>KOG3115|consensus
Probab=96.13 E-value=0.03 Score=45.90 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCCe--EEEEeCChHHHHHHHHHHHhc--CCcccCCCCeEEEEcCCCCCCC---CCCCe
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYMGAK--VYAIEHVKNLCKRAMKNIRRG--APAIALAENFEFVCADGRRGYP---DAAPY 203 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~~~~--v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~~~~---~~~~f 203 (299)
....+.|||||=|.+...++....+ +.|.|+-....+..+++++.. .++.+...|+.+...+.....+ ..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4568999999999999999988554 999999888888887777541 1111335677777777664322 22222
Q ss_pred eEEEecchh--------------hhHHHHHHHhccCCcEEEEEec
Q psy7837 204 DVIYISQAI--------------RDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 204 D~v~~~~~~--------------~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
+-.+.-.+- ..+..+..-+|++||.++..+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 222222211 2344577779999999998754
No 446
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.10 E-value=0.059 Score=51.07 Aligned_cols=97 Identities=25% Similarity=0.281 Sum_probs=64.6
Q ss_pred cCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEE--EEcCCC---------C
Q psy7837 129 LVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF--VCADGR---------R 195 (299)
Q Consensus 129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~--~~~d~~---------~ 195 (299)
..++.+|+-+||| .|..++..++. |++|+++|.+++.++.+++. +...+.+ ...+.. .
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl---------GA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM---------GAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc---------CCeEEEeccccccccccchhhhcch
Confidence 4678999999999 66677666654 99999999999999988763 1111111 000000 0
Q ss_pred C--------CCC-CCCeeEEEecchhh-----hH-HHHHHHhccCCcEEEEEec
Q psy7837 196 G--------YPD-AAPYDVIYISQAIR-----DI-PWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 196 ~--------~~~-~~~fD~v~~~~~~~-----~~-~~~~~~~L~~gG~lv~~~~ 234 (299)
. +.+ ...+|+|+...... .+ .++..+.+|+||.++....
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 000 13599999877652 24 5899999999999887654
No 447
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.10 E-value=0.019 Score=47.95 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCcHHH--HHHHHcCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-CCCC----CCCCe
Q psy7837 131 YGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-RGYP----DAAPY 203 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~--~~la~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~----~~~~f 203 (299)
++-++||||.|.--.= +-....|.+.+|.|+++..++.|+.++..|. .....+++....-. ..+. ..+.|
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~---~l~~~I~lr~qk~~~~if~giig~nE~y 154 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP---GLERAIRLRRQKDSDAIFNGIIGKNERY 154 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc---chhhheeEEeccCcccccccccccccee
Confidence 4568999998854322 2223459999999999999999999998742 22334555443222 2111 23679
Q ss_pred eEEEecchhhhHHHH
Q psy7837 204 DVIYISQAIRDIPWH 218 (299)
Q Consensus 204 D~v~~~~~~~~~~~~ 218 (299)
|++.|+++++.-.++
T Consensus 155 d~tlCNPPFh~s~~d 169 (292)
T COG3129 155 DATLCNPPFHDSAAD 169 (292)
T ss_pred eeEecCCCcchhHHH
Confidence 999999999866543
No 448
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.011 Score=52.71 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=51.8
Q ss_pred cCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 48 ~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
...|.+.+.++.... +++|+.|||-=||||.+...+.-.. .+++|.|++..|++-++.|+...
T Consensus 180 s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y 242 (347)
T COG1041 180 SMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYY 242 (347)
T ss_pred CcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhh
Confidence 346777666666555 9999999999999999877766543 47999999999999999999874
No 449
>PRK03612 spermidine synthase; Provisional
Probab=96.07 E-value=0.053 Score=51.85 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
.++..+|||+|||+|..+..+.+. +...+++.+|+++.+++.++++
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence 356789999999999999888764 2236999999999999999983
No 450
>PRK13699 putative methylase; Provisional
Probab=96.06 E-value=0.018 Score=48.86 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=43.6
Q ss_pred cCCCCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHHHHHHh
Q psy7837 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 129 ~~~~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~~~~~~ 175 (299)
..+|..|||..||+|+.+.+..+.|.+++|+|+++...+.+.++++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999888865
No 451
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.03 E-value=0.051 Score=45.02 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc------CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-------
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM------GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG------- 196 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~------- 196 (299)
.+...|+|+|.-.|.-+..+|++ ..+|+++|++-........ +.. ....++++++||..+.
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~h----p~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESH----PMSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG--------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhc----cccCceEEEECCCCCHHHHHHHH
Confidence 34789999999999888877654 3679999996443322111 110 2347999999998742
Q ss_pred -CCCCCCeeEEEecchh--hhHH---HHHHHhccCCcEEEEEec
Q psy7837 197 -YPDAAPYDVIYISQAI--RDIP---WHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 197 -~~~~~~fD~v~~~~~~--~~~~---~~~~~~L~~gG~lv~~~~ 234 (299)
........+|+.+..- .++. +....++++|+++++...
T Consensus 105 ~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 1112344577766651 2333 457889999999998654
No 452
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.00 E-value=0.042 Score=49.72 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=60.0
Q ss_pred cCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeC---ChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837 129 LVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEH---VKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY 203 (299)
Q Consensus 129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~---~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 203 (299)
..++.+||-+|+| .|.++..+++. |++|++++. ++...+.+++. +...+.....+... ......+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~---------Ga~~v~~~~~~~~~-~~~~~~~ 239 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL---------GATYVNSSKTPVAE-VKLVGEF 239 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc---------CCEEecCCccchhh-hhhcCCC
Confidence 4578999999987 45666666655 789999987 56666655532 11111111111111 1112469
Q ss_pred eEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837 204 DVIYISQAIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 204 D~v~~~~~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
|+|+-............+.|+++|++++.-
T Consensus 240 d~vid~~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEATGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEECcCCHHHHHHHHHHccCCcEEEEEe
Confidence 999877665556778899999999988754
No 453
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.98 E-value=0.014 Score=47.53 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHhc--cCCCC--CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHH
Q psy7837 56 LVLELLSG--HLKYG--DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103 (299)
Q Consensus 56 ~~~~~l~~--~~~~g--~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~ 103 (299)
++.+.+.. .+.++ .+|||+||++|.|+.++.+..++.++++|+|..+.
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 44444433 13454 89999999999999999999877789999999876
No 454
>PRK01581 speE spermidine synthase; Validated
Probab=95.93 E-value=0.026 Score=50.88 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~ 110 (299)
.....+||++|||.|.....+.+. .+..+++.+|+++.+++.|++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHh
Confidence 455679999999999987777764 234689999999999999996
No 455
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=95.89 E-value=0.017 Score=48.61 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=37.1
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
..++.+||..|||.|+...+|++.. -.|+|+|+++..++.+.+.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e 78 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEE 78 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHH
Confidence 7788899999999999999999863 3799999999999887543
No 456
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.81 E-value=0.02 Score=45.72 Aligned_cols=44 Identities=30% Similarity=0.341 Sum_probs=37.1
Q ss_pred CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837 69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
+.|+|+.||.|..+..+|+... +|+++|+++..++.++.+..-+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vY 44 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVY 44 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHc
Confidence 3689999999999999999854 6999999999999999998763
No 457
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.073 Score=47.64 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHHHHHHHHc---
Q psy7837 77 GSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM--- 152 (299)
Q Consensus 77 G~G~~~~~la~~~~~~g-~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~--- 152 (299)
+.||.+. +...|..| .+++.+++..+-+..-..+.+. +........-.++|+|+|+|.++.-+.+.
T Consensus 32 ~~GYYs~--~~~~G~~GDFiTApels~lFGella~~~~~~--------wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~ 101 (370)
T COG1565 32 EHGYYSS--AVKIGRKGDFITAPELSQLFGELLAEQFLQL--------WQELGRPAPLKLVEIGAGRGTLASDILRTLRR 101 (370)
T ss_pred CCccccc--chhccccCCeeechhHHHHHHHHHHHHHHHH--------HHHhcCCCCceEEEeCCCcChHHHHHHHHHHH
Confidence 4577766 44555544 6777887776655443333321 11112233568999999999999876542
Q ss_pred -------CCeEEEEeCChHHHHHHHHHHHh
Q psy7837 153 -------GAKVYAIEHVKNLCKRAMKNIRR 175 (299)
Q Consensus 153 -------~~~v~~~D~~~~~~~~a~~~~~~ 175 (299)
..++.-+|+|++..+.=+++++.
T Consensus 102 L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 102 LYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 46799999999999888888766
No 458
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.76 E-value=0.038 Score=50.42 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCC-CeEEEEcCCCCCC-CCCCCeeEE
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAE-NFEFVCADGRRGY-PDAAPYDVI 206 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~v 206 (299)
+-++||.=+|+|.=++-++.- + ..|+.-|+|+++++.+++|++.| +... .+++.+.|+.... .....||+|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N----~~~~~~~~v~~~DAn~ll~~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN----GLEDERIEVSNMDANVLLYSRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC----T-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc----cccCceEEEehhhHHHHhhhccccCCEE
Confidence 458999999999999887765 3 46999999999999999999985 3333 5888898987543 234779999
Q ss_pred Eecch--hhhHHHHHHHhccCCcEEEEEe
Q psy7837 207 YISQA--IRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 207 ~~~~~--~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
=+++- .....+.+.+.++.||.|.+..
T Consensus 126 DlDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 126 DLDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EE--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 88763 3356688889999999999964
No 459
>KOG2793|consensus
Probab=95.75 E-value=0.09 Score=44.90 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCccc-CCCCeEEEEcCCCCCC---CCCCC-ee
Q psy7837 131 YGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIA-LAENFEFVCADGRRGY---PDAAP-YD 204 (299)
Q Consensus 131 ~~~~vLDiG~G~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~v~~~~~d~~~~~---~~~~~-fD 204 (299)
...+|||+|+|+|..++.++.. +..|...|....... .+.+...++..+. ....+.+...+..... ..... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4567999999999888888874 778888887544322 2222211110001 1224444444333211 11122 89
Q ss_pred EEEecchh------hhHHHHHHHhccCCcEEEEEecCC
Q psy7837 205 VIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 205 ~v~~~~~~------~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
+|++..++ +.+...+..+|..+|.+++...-.
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 88887764 456678888888999666665543
No 460
>KOG4589|consensus
Probab=95.73 E-value=0.03 Score=45.31 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=66.5
Q ss_pred cccCCCCeEEEEcCCCcHHHHHHHHc---CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCCCC------
Q psy7837 127 GHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGRRG------ 196 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G~G~~~~~la~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~------ 196 (299)
.-+.|+.+|||+||..|.++....++ ...|.++|+-+- .....+.++.+ |+.++
T Consensus 65 ~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred cccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------------cCCCCcccccccccCCHHHHHHH
Confidence 34678999999999999999988776 456999998542 12345566666 55532
Q ss_pred --CCCCCCeeEEEecchhh--------h---------HHHHHHHhccCCcEEEEEecCCCCc
Q psy7837 197 --YPDAAPYDVIYISQAIR--------D---------IPWHIVDQLKLGGRMLFIKGHEDDI 239 (299)
Q Consensus 197 --~~~~~~fD~v~~~~~~~--------~---------~~~~~~~~L~~gG~lv~~~~~~~~~ 239 (299)
..+..+.|+|++++.-. + +.--....++|+|.+++-.......
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 12346789999887531 1 1123456788999999988765433
No 461
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.68 E-value=0.12 Score=46.84 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=68.4
Q ss_pred cCCCCeEEEEcCC-CcHHHHHHHHc-C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEc-CCC-C--CCCCCC
Q psy7837 129 LVYGSKVLDIGSG-SGYLSALFAYM-G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA-DGR-R--GYPDAA 201 (299)
Q Consensus 129 ~~~~~~vLDiG~G-~G~~~~~la~~-~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~-~--~~~~~~ 201 (299)
..++.+|+-+||| -|.++..+++. | .+|+.+|.++.-++.|++... ...+..... +.. . ......
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g--------~~~~~~~~~~~~~~~~~~~t~g~ 237 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG--------ADVVVNPSEDDAGAEILELTGGR 237 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC--------CeEeecCccccHHHHHHHHhCCC
Confidence 3455599999999 67777777766 5 469999999999999988421 111111111 111 0 111123
Q ss_pred CeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837 202 PYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 202 ~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
.+|+++-..........+.+.+++||.+++.--.
T Consensus 238 g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence 6999998888777788999999999999987544
No 462
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.68 E-value=0.052 Score=49.71 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++.+|||++||+|..+..++...+ ..+|+++|+++..++.+++++..
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~ 103 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL 103 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence 457999999999999999988765 34799999999999999999865
No 463
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.65 E-value=0.039 Score=45.62 Aligned_cols=44 Identities=20% Similarity=0.211 Sum_probs=37.4
Q ss_pred EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 70 ~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
-+||||||.|.+...+|.... +-.++|+|+....+..+.+.+..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~ 63 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEK 63 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHh
Confidence 779999999999999999874 67899999999999988888776
No 464
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.64 E-value=0.11 Score=46.60 Aligned_cols=93 Identities=19% Similarity=0.131 Sum_probs=61.3
Q ss_pred cccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCee
Q psy7837 127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYD 204 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 204 (299)
..+.++.+||-.|+| .|..+..+++. |++|++++.++...+.+++. +.+.+ + |.... ....+|
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~---------Ga~~v--i--~~~~~--~~~~~d 225 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL---------GAASA--G--GAYDT--PPEPLD 225 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh---------CCcee--c--ccccc--Ccccce
Confidence 567889999999975 44444555554 88899999998887777663 22111 1 11111 113588
Q ss_pred EEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837 205 VIYISQAIRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 205 ~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
+++.............+.|+++|++++.-.
T Consensus 226 ~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 226 AAILFAPAGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEEECCCcHHHHHHHHHhhCCCcEEEEEec
Confidence 776555445567788899999999987643
No 465
>KOG2187|consensus
Probab=95.62 E-value=0.011 Score=55.00 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 55 ~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.-+-+++. +.++..++|+.||+|.++..+++.+. +|+|+++++..++-|+.+...
T Consensus 373 s~i~e~~~--l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 373 STIGEWAG--LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred HHHHHHhC--CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchh
Confidence 33334444 67788889999999999999999876 499999999999999988765
No 466
>KOG1500|consensus
Probab=95.62 E-value=0.027 Score=49.58 Aligned_cols=46 Identities=35% Similarity=0.452 Sum_probs=37.7
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
-.|..|||+|||+|.++.+.+....+ +|++++.+ .|.+.|++.+..
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~ 221 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVAS 221 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhc
Confidence 35778999999999999988877654 89999975 577888887765
No 467
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.54 E-value=0.21 Score=44.46 Aligned_cols=98 Identities=23% Similarity=0.187 Sum_probs=65.1
Q ss_pred hhhcccCCCCeEEEEcCC-CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----
Q psy7837 124 NFYGHLVYGSKVLDIGSG-SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----- 196 (299)
Q Consensus 124 ~~~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 196 (299)
.....+.++.+||..|+| .|..+..+++. |.+|++++.++...+.+++. +.. .+..+-...
T Consensus 158 ~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~---------g~~---~~~~~~~~~~~~~~ 225 (338)
T cd08254 158 VRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL---------GAD---EVLNSLDDSPKDKK 225 (338)
T ss_pred HhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---------CCC---EEEcCCCcCHHHHH
Confidence 344567788899998876 46676666664 88899999999888777542 111 111111100
Q ss_pred -CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837 197 -YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 197 -~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
......+|+++-........++..+.|+++|.++...
T Consensus 226 ~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 226 AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEEC
Confidence 1223569998865545567778899999999998764
No 468
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.41 E-value=0.034 Score=46.96 Aligned_cols=44 Identities=16% Similarity=-0.018 Sum_probs=37.5
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~ 111 (299)
+.++.+||..|||.|....+|++..- .|+|+|+++..++.+.+.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHH
Confidence 34678999999999999999998643 599999999999987653
No 469
>KOG1562|consensus
Probab=95.41 E-value=0.052 Score=47.07 Aligned_cols=103 Identities=18% Similarity=0.130 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHcC--CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCC--CCCCCeeE
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGY--PDAAPYDV 205 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~ 205 (299)
...++||-||-|.|.+....+++. .++.-+|++.+.++..++-++.-.-+ ....++.+..||..... ...++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceEEEeccHHHHHHHhccCCceE
Confidence 457899999999999999888773 35999999999998888766542111 34578999999987432 23488999
Q ss_pred EEecchhh----------hHHHHHHHhccCCcEEEEEe
Q psy7837 206 IYISQAIR----------DIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 206 v~~~~~~~----------~~~~~~~~~L~~gG~lv~~~ 233 (299)
|+.+..-. .....+.+.||+||+++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99876422 22347889999999998865
No 470
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.22 E-value=0.076 Score=43.43 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=44.8
Q ss_pred hHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 53 ~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
+-+.++..|.....+|.+|||+-||||.++........ .+++.+|.+.......++++..
T Consensus 28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence 44666777764326799999999999999986555443 3799999999999999999987
No 471
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.11 E-value=0.11 Score=47.16 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=62.4
Q ss_pred hcccCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCC-eEEEEcCCCC---CCC
Q psy7837 126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAEN-FEFVCADGRR---GYP 198 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~---~~~ 198 (299)
...+.++.+||-.|+| .|..+..+++. |.+ |+++|.++...+.+++. +.+. +.....+... ...
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALT 241 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHh
Confidence 4567889999999875 34555556654 775 99999999888877542 1111 1111111100 011
Q ss_pred CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837 199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
....+|+|+-...-....+...+.++++|++++.-.
T Consensus 242 ~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 242 GGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 223589998655444556777889999999987643
No 472
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.98 E-value=0.15 Score=46.00 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=58.4
Q ss_pred ccCCCCeEEEEcCC-CcHHHHHHHH--cC-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCe
Q psy7837 128 HLVYGSKVLDIGSG-SGYLSALFAY--MG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPY 203 (299)
Q Consensus 128 ~~~~~~~vLDiG~G-~G~~~~~la~--~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 203 (299)
...++.+||-+||| .|.++..+++ .| .+|+++|.++.-++.+++ +. .. ....+ ..+...+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~-------~~----~~~~~----~~~~~g~ 223 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD-------ET----YLIDD----IPEDLAV 223 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC-------ce----eehhh----hhhccCC
Confidence 35679999999987 4555555555 33 579999999887777754 11 10 10011 1111248
Q ss_pred eEEEecch---hhhHHHHHHHhccCCcEEEEEe
Q psy7837 204 DVIYISQA---IRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 204 D~v~~~~~---~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
|+|+-... .....+...+.|+++|++++.-
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 99985544 3456677889999999998764
No 473
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.83 E-value=0.088 Score=39.98 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=59.4
Q ss_pred CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC------CCCCCCCeeEEEecchhhh
Q psy7837 142 SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR------GYPDAAPYDVIYISQAIRD 214 (299)
Q Consensus 142 ~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~fD~v~~~~~~~~ 214 (299)
.|..+..+++. |++|+++|.++..++.+++. +.. .++..+-.. .......+|+|+-......
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---------Ga~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---------GAD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---------ccc--ccccccccccccccccccccccceEEEEecCcHH
Confidence 46777777765 88999999999998888764 211 112221110 1122247999998777778
Q ss_pred HHHHHHHhccCCcEEEEEecCC
Q psy7837 215 IPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 215 ~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
..+....+|+++|++++.-...
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8889999999999999987665
No 474
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=94.82 E-value=0.11 Score=46.67 Aligned_cols=45 Identities=29% Similarity=0.224 Sum_probs=32.7
Q ss_pred CCCEEEEEccCCCHHHH-HHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~-~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
++.+|||+|||-|.... +.... -++++|+|++..-++.|+++...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK---IKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHH
Confidence 89999999999776544 44432 36899999999999999998844
No 475
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.81 E-value=0.24 Score=42.32 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=64.3
Q ss_pred hhhcccCCCCeEEEEcCCC-cHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC-----
Q psy7837 124 NFYGHLVYGSKVLDIGSGS-GYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG----- 196 (299)
Q Consensus 124 ~~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 196 (299)
.....+.++.+||..|+|+ |.....+++. |.+|++++.++...+.+++. +... ++.......
T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~---------g~~~--~~~~~~~~~~~~~~ 195 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL---------GADH--VIDYKEEDLEEELR 195 (271)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh---------CCce--eccCCcCCHHHHHH
Confidence 3344557899999999986 5555555554 88999999998777666442 1111 111100000
Q ss_pred CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecC
Q psy7837 197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~ 235 (299)
......+|+++.............+.|+++|.++.....
T Consensus 196 ~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 196 LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence 112356999987655435667788899999999876544
No 476
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.81 E-value=0.12 Score=45.22 Aligned_cols=61 Identities=25% Similarity=0.272 Sum_probs=46.2
Q ss_pred HHHHHHHhccC--CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Q psy7837 55 CLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 55 ~~~~~~l~~~~--~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
..++..+...+ ....+|||+|||+|...-.+.+.++.-..++.+|.++.+.+.++..+...
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 45555554332 23468999999999887777777775578999999999999988877653
No 477
>KOG2798|consensus
Probab=94.80 E-value=0.14 Score=44.79 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHcCCeEEEEeCChHHHHHHH
Q psy7837 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAM 170 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~~~~v~~~D~~~~~~~~a~ 170 (299)
.-+||-.|||.|.++..++..|..+-|=|.|--|+-.-.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence 458999999999999999999988888888877754433
No 478
>PRK10742 putative methyltransferase; Provisional
Probab=94.68 E-value=0.13 Score=43.94 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHhccCCCCC--EEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 56 LVLELLSGHLKYGD--KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 56 ~~~~~l~~~~~~g~--~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
.+++.+. +++|. +|||+.+|+|..+..++...+ .|+.+|.++.+....++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHH
Confidence 4444444 78888 999999999999999998743 599999999999999988887
No 479
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.65 E-value=0.13 Score=46.63 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=51.7
Q ss_pred cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCC-------------------------------C
Q psy7837 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI-------------------------------S 92 (299)
Q Consensus 44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~-------------------------------~ 92 (299)
.+..-..+.+.+.++.+. ..+++..++|--||||.+.+..|..... .
T Consensus 170 ~g~ApLketLAaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 170 DGPAPLKETLAAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred CCCCCchHHHHHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 334444455556665443 4889999999999999999887765531 0
Q ss_pred c-------eEEEEeCCHHHHHHHHHHHHHh
Q psy7837 93 G-------KVYTIEHIPELLEAARKRVKAK 115 (299)
Q Consensus 93 g-------~v~~~d~~~~~~~~a~~~l~~~ 115 (299)
. +++++|+++++++.|+.+....
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A 277 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAA 277 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhc
Confidence 1 4789999999999999999873
No 480
>KOG2915|consensus
Probab=94.64 E-value=0.12 Score=44.43 Aligned_cols=51 Identities=29% Similarity=0.353 Sum_probs=42.2
Q ss_pred HHhhhcccCCCCeEEEEcCCCcHHHHHHHHcC---CeEEEEeCChHHHHHHHHH
Q psy7837 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKN 172 (299)
Q Consensus 122 ~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~---~~v~~~D~~~~~~~~a~~~ 172 (299)
.|..+....||.+|+|-|+|+|+++..+++.- ..++..|+.+...+.+++.
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~ee 149 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEE 149 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHH
Confidence 35556678999999999999999999999984 5699999988776666654
No 481
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.58 E-value=0.19 Score=46.06 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=65.2
Q ss_pred hhcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC-CCC---CC
Q psy7837 125 FYGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD-GRR---GY 197 (299)
Q Consensus 125 ~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~ 197 (299)
....+.++.+||..|||. |..+..+++. |. ++++++.++...+.+++.. ....+.....+ ... ..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~--------~~~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL--------GAETINFEEVDDVVEALREL 249 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC--------CcEEEcCCcchHHHHHHHHH
Confidence 345678899999999886 7777777765 65 5999999999888877641 11111111111 110 11
Q ss_pred CCCCCeeEEEecchh---------------------hhHHHHHHHhccCCcEEEEEec
Q psy7837 198 PDAAPYDVIYISQAI---------------------RDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 198 ~~~~~fD~v~~~~~~---------------------~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
.....+|+++-...- ....+++.+.|+++|+++....
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 122468988764321 2345678899999999988743
No 482
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.57 E-value=0.045 Score=48.80 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.2
Q ss_pred CCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCH
Q psy7837 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102 (299)
Q Consensus 65 ~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~ 102 (299)
+.+|.++||+||++|.||.++.+.. .+|+++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh
Confidence 5789999999999999999999873 3799999543
No 483
>PHA01634 hypothetical protein
Probab=94.56 E-value=0.15 Score=38.60 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=41.1
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
-.+.+|+|||++.|..+++++-...+ +|++++.++.+.+..+++++.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhh
Confidence 46789999999999999999877654 899999999999999887765
No 484
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.54 E-value=0.2 Score=44.46 Aligned_cols=86 Identities=21% Similarity=0.186 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeEE
Q psy7837 130 VYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI 206 (299)
Q Consensus 130 ~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 206 (299)
.++.+||-+||| .|.++..+++. |++ |+.+|.++..++.+... . + .|.... ....+|+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--------~------~--i~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--------E------V--LDPEKD--PRRDYRAI 204 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--------c------c--cChhhc--cCCCCCEE
Confidence 357789999887 56666666654 776 77788887666554321 0 0 111110 12468999
Q ss_pred EecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837 207 YISQAIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 207 ~~~~~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
+-...-....+...+.|+++|++++.-
T Consensus 205 id~~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence 876666666788899999999999764
No 485
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.53 E-value=0.18 Score=45.86 Aligned_cols=99 Identities=16% Similarity=0.042 Sum_probs=62.2
Q ss_pred hcccCCCCeEEEEcCC-CcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCC---CCC
Q psy7837 126 YGHLVYGSKVLDIGSG-SGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRR---GYP 198 (299)
Q Consensus 126 ~~~~~~~~~vLDiG~G-~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~---~~~ 198 (299)
...+.++.+||-.|+| .|.++..+++. |+ .|+++|.++..++.+++. +...+ .....|... ...
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL---------GATATVNAGDPNAVEQVRELT 256 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc---------CCceEeCCCchhHHHHHHHHh
Confidence 4567889999999876 34555555554 77 599999999888877652 11111 100111110 011
Q ss_pred CCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837 199 DAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 199 ~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
. +.+|+++-........+...+.|+++|++++.-.
T Consensus 257 ~-~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 257 G-GGVDYAFEMAGSVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred C-CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEcc
Confidence 1 2589998655445566778889999999987643
No 486
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.18 Score=45.26 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCC-CCCeeEEEe
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVIYI 208 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~ 208 (299)
..+|+|.=+|+|.=++-++.- +. .|+.-|+||.+++.+++|++.| ...+...+..|+...... ...||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N-----~~~~~~v~n~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN-----SGEDAEVINKDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc-----CcccceeecchHHHHHHhcCCCccEEec
Confidence 789999999999999877755 44 7999999999999999999984 455666666776643322 367999977
Q ss_pred cch--hhhHHHHHHHhccCCcEEEEEec
Q psy7837 209 SQA--IRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 209 ~~~--~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
++- ..-..+...+.++.+|.+.+...
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 653 23455788888899999999753
No 487
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.50 E-value=0.089 Score=47.13 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=52.3
Q ss_pred cccccCCcchHHHHHHHHhccCCCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 44 ~~~~~~~p~~~~~~~~~l~~~~~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
....+-+|++..-=. ++....++|++|+|.=||.|+++..++....+. |+++|+++..++..++++..
T Consensus 166 ~~Kv~Fsprl~~ER~-Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~L 233 (341)
T COG2520 166 VAKVYFSPRLSTERA-RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIRL 233 (341)
T ss_pred hHHeEECCCchHHHH-HHHhhhcCCCEEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHHh
Confidence 345666777642211 222336789999999999999999999877653 99999999999999999876
No 488
>KOG0822|consensus
Probab=94.46 E-value=0.21 Score=46.75 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=67.4
Q ss_pred CCeEEEEcCCCcHHHHHHHH------cCCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCCCCCCCCeeE
Q psy7837 132 GSKVLDIGSGSGYLSALFAY------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDV 205 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 205 (299)
-.+++-+|+|.|.+.....+ +-.+++++|-+|+++...+..--. ....+++++..|+....++....|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~-----~W~~~Vtii~~DMR~w~ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE-----CWDNRVTIISSDMRKWNAPREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh-----hhcCeeEEEeccccccCCchhhccc
Confidence 45788999999988765432 245699999999998777653222 3678999999999975544467898
Q ss_pred EEecc--------hhhhHHHHHHHhccCCcEEE
Q psy7837 206 IYISQ--------AIRDIPWHIVDQLKLGGRML 230 (299)
Q Consensus 206 v~~~~--------~~~~~~~~~~~~L~~gG~lv 230 (299)
+++-. .-....+-+.+.|||+|+.+
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 87521 12345567888999997654
No 489
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.41 E-value=0.7 Score=38.44 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=67.9
Q ss_pred CCCCeEEEEcCCCc--HHHHHH--HHc--CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC-CCCCCCCC
Q psy7837 130 VYGSKVLDIGSGSG--YLSALF--AYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR-RGYPDAAP 202 (299)
Q Consensus 130 ~~~~~vLDiG~G~G--~~~~~l--a~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~ 202 (299)
...+.++++.|+.| ..++.| |.+ |.+++++-.+++.+...++.+... ...+.++|+.++.. .....-..
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~----~~~~~vEfvvg~~~e~~~~~~~~ 115 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA----GLSDVVEFVVGEAPEEVMPGLKG 115 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc----cccccceEEecCCHHHHHhhccC
Confidence 44578899866643 233333 332 899999999999888888887652 23455799999854 23333356
Q ss_pred eeEEEecchhhhHHHHHHHhcc--CCcEEEEEecC
Q psy7837 203 YDVIYISQAIRDIPWHIVDQLK--LGGRMLFIKGH 235 (299)
Q Consensus 203 fD~v~~~~~~~~~~~~~~~~L~--~gG~lv~~~~~ 235 (299)
.|+++++.-......++.+.++ +.|-+++..+.
T Consensus 116 iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na 150 (218)
T PF07279_consen 116 IDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNA 150 (218)
T ss_pred CCEEEEeCCchhHHHHHHHHhccCCCceEEEEecc
Confidence 9999999988777755555554 45766665443
No 490
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.34 E-value=0.26 Score=41.75 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=39.9
Q ss_pred CEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHH
Q psy7837 69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114 (299)
Q Consensus 69 ~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~ 114 (299)
..+||||||.|.+...+|..-. +--.+|+|+....+..+.+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~ 94 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKE 94 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHH
Confidence 4789999999999999999875 46799999999999988888877
No 491
>KOG1253|consensus
Probab=94.21 E-value=0.052 Score=50.27 Aligned_cols=100 Identities=20% Similarity=0.148 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc--C-CeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCC----CCCCCCC
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM--G-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR----GYPDAAP 202 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~--~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~ 202 (299)
.++-+|||.=|++|.-++.++.. | .+|++-|.+++.+...++|.+.| .....++....|+.. .......
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N----~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN----GVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc----CchhhcccccchHHHHHHhccccccc
Confidence 45678999999999999988876 4 45999999999999999999885 345667777888763 1222367
Q ss_pred eeEEEecc--hhhhHHHHHHHhccCCcEEEEEe
Q psy7837 203 YDVIYISQ--AIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 203 fD~v~~~~--~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
||+|=+++ ....+.+.+.+.++.||.|++..
T Consensus 184 FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 184 FDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cceEecCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 99998875 34567789999999999999964
No 492
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.11 E-value=0.14 Score=42.46 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCcHHHHHHHHc---C-CeEEEEeCChHHHHHHHHHHHh-------------------cCC--------
Q psy7837 130 VYGSKVLDIGSGSGYLSALFAYM---G-AKVYAIEHVKNLCKRAMKNIRR-------------------GAP-------- 178 (299)
Q Consensus 130 ~~~~~vLDiG~G~G~~~~~la~~---~-~~v~~~D~~~~~~~~a~~~~~~-------------------~~~-------- 178 (299)
..+-++.|..||+|++.-.+.-. . ..|++.|+++.+++.|++|+.- .++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44569999999999988766433 2 3599999999999999998721 000
Q ss_pred ----------cccCCCCeEEEEcCCCCCC-----CCCCCeeEEEecchh---------------hhHHHHHHHhccCCcE
Q psy7837 179 ----------AIALAENFEFVCADGRRGY-----PDAAPYDVIYISQAI---------------RDIPWHIVDQLKLGGR 228 (299)
Q Consensus 179 ----------~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~~---------------~~~~~~~~~~L~~gG~ 228 (299)
..+..........|+.++. ......|+|+.+-+. ..+.+.+..+|-++++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 0002234567777777521 122336999987653 3455788999966666
Q ss_pred EEEEec
Q psy7837 229 MLFIKG 234 (299)
Q Consensus 229 lv~~~~ 234 (299)
++++..
T Consensus 210 V~v~~k 215 (246)
T PF11599_consen 210 VAVSDK 215 (246)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 666433
No 493
>PLN02823 spermine synthase
Probab=94.10 E-value=0.43 Score=42.94 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=55.0
Q ss_pred CCCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhHHHHHHHHhhhcccCCCCeEEEEcCCCcHH
Q psy7837 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYL 145 (299)
Q Consensus 66 ~~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~ 145 (299)
....+||.+|+|.|..+..+.+..+ ..++..+|+++.+++.+++.+... .....+.+ +.+=.|.|..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~-----------~~~~~dpr-v~v~~~Da~~ 168 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVN-----------REAFCDKR-LELIINDARA 168 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccc-----------cccccCCc-eEEEEChhHH
Confidence 3457999999999999987776432 358999999999999999887531 00111222 2455566654
Q ss_pred HHHHHHcCCeEEEEeCC
Q psy7837 146 SALFAYMGAKVYAIEHV 162 (299)
Q Consensus 146 ~~~la~~~~~v~~~D~~ 162 (299)
-+.-.....+++.+|..
T Consensus 169 ~L~~~~~~yDvIi~D~~ 185 (336)
T PLN02823 169 ELEKRDEKFDVIIGDLA 185 (336)
T ss_pred HHhhCCCCccEEEecCC
Confidence 33222224568888853
No 494
>KOG1099|consensus
Probab=93.99 E-value=0.14 Score=42.86 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCcHHHHHHHHc--------CC---eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC----
Q psy7837 132 GSKVLDIGSGSGYLSALFAYM--------GA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG---- 196 (299)
Q Consensus 132 ~~~vLDiG~G~G~~~~~la~~--------~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~---- 196 (299)
-.+++|+.+..|+++..+++. +. .++++|+.+- .....+.-+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----------------aPI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----------------APIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----------------CccCceEEeecccCCHhHHH
Confidence 468999999999999998764 22 2999998652 2346777889998852
Q ss_pred ----CCCCCCeeEEEecchh-----hhHHH------------HHHHhccCCcEEEEEecC
Q psy7837 197 ----YPDAAPYDVIYISQAI-----RDIPW------------HIVDQLKLGGRMLFIKGH 235 (299)
Q Consensus 197 ----~~~~~~fD~v~~~~~~-----~~~~~------------~~~~~L~~gG~lv~~~~~ 235 (299)
.+...+.|+|++++.. |.+.+ -...+|++||.+|.-+.-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 2334689999999863 33332 345689999999986543
No 495
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=93.80 E-value=0.25 Score=44.19 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=60.2
Q ss_pred cccCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCe-EEEEcCCCC--CCCCC
Q psy7837 127 GHLVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENF-EFVCADGRR--GYPDA 200 (299)
Q Consensus 127 ~~~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~--~~~~~ 200 (299)
..+.++.+||-+|+| .|..+..+++. |++ |++++.+++..+.+++. +...+ .....+... .....
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~ 229 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL---------GADFVINSGQDDVQEIRELTSG 229 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---------CCCEEEcCCcchHHHHHHHhCC
Confidence 456779999999875 33444445543 888 99999998877776543 11111 000011000 01122
Q ss_pred CCeeEEEecchhhhHHHHHHHhccCCcEEEEEec
Q psy7837 201 APYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKG 234 (299)
Q Consensus 201 ~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~ 234 (299)
..+|+++-...-........+.|+++|++++.-.
T Consensus 230 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 230 AGADVAIECSGNTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcC
Confidence 4699998655555555677889999999987543
No 496
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.75 E-value=0.14 Score=43.85 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCCEEEEEccCCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Q psy7837 67 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109 (299)
Q Consensus 67 ~g~~vldiG~G~G~~~~~la~~~~~~g~v~~~d~~~~~~~~a~ 109 (299)
...++||+|+|.|..|..++..+.. |++.|.+..|..+-+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~ 133 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLS 133 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHH
Confidence 4568999999999999999988865 999999999965433
No 497
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.72 E-value=0.48 Score=42.30 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=60.6
Q ss_pred HhhhcccCCCCeEEEEcCCC-cHHHHHHHHc-CC-eEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcC---CCCC
Q psy7837 123 INFYGHLVYGSKVLDIGSGS-GYLSALFAYM-GA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD---GRRG 196 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G~-G~~~~~la~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d---~~~~ 196 (299)
+...... ++.+||..|+|. |..+..+++. |. .+++++.++...+.+++. +.. .++..+ ....
T Consensus 158 l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~---------g~~--~vi~~~~~~~~~~ 225 (339)
T cd08232 158 VNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM---------GAD--ETVNLARDPLAAY 225 (339)
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc---------CCC--EEEcCCchhhhhh
Confidence 3334445 789999988764 5565556554 87 699999888877755442 111 111111 1111
Q ss_pred CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837 197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
......+|+++-........+...+.|+++|+++...
T Consensus 226 ~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 226 AADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred hccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 1122459999875544445677889999999988754
No 498
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.69 E-value=0.23 Score=43.38 Aligned_cols=95 Identities=21% Similarity=0.179 Sum_probs=59.3
Q ss_pred cCCCCeEEEEcCC-CcHHHHHHHHc-CCe-EEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCC---CCCCCCCC
Q psy7837 129 LVYGSKVLDIGSG-SGYLSALFAYM-GAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR---RGYPDAAP 202 (299)
Q Consensus 129 ~~~~~~vLDiG~G-~G~~~~~la~~-~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~ 202 (299)
..++.+||-.|+| .|..+..+++. |.+ |+.+|.++...+.+++. +...+ +-..+.. ........
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~---------Ga~~~-i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF---------GATAL-AEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc---------CCcEe-cCchhhHHHHHHHhCCCC
Confidence 3578999999875 44444555544 776 99999998877776653 11110 0000100 00112245
Q ss_pred eeEEEecchhhhHHHHHHHhccCCcEEEEEe
Q psy7837 203 YDVIYISQAIRDIPWHIVDQLKLGGRMLFIK 233 (299)
Q Consensus 203 fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~ 233 (299)
+|+++-...-....+...+.|+++|++++.-
T Consensus 188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 8999876555566778899999999998765
No 499
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.67 E-value=0.41 Score=42.96 Aligned_cols=105 Identities=19% Similarity=0.118 Sum_probs=66.9
Q ss_pred HhhhcccCCCCeEEEEcCC--CcHHHHHHHHc-CCeEEEEeCChHHHHHHHHHHHhcCCcccCCCCeEEEEcCCCCC---
Q psy7837 123 INFYGHLVYGSKVLDIGSG--SGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG--- 196 (299)
Q Consensus 123 ~~~~~~~~~~~~vLDiG~G--~G~~~~~la~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~--- 196 (299)
+.....+.++.+||-.|+. .|.++.++++. |..++++-.+++-.+.+++. +...-+.+...|....
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l--------GAd~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL--------GADHVINYREEDFVEQVRE 205 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc--------CCCEEEcCCcccHHHHHHH
Confidence 4446678889999999955 55677778776 66777777777666655543 2222233333333221
Q ss_pred CCCCCCeeEEEecchhhhHHHHHHHhccCCcEEEEEecCC
Q psy7837 197 YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236 (299)
Q Consensus 197 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~ 236 (299)
......+|+|+-... .....+....|+++|+++..-...
T Consensus 206 ~t~g~gvDvv~D~vG-~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 206 LTGGKGVDVVLDTVG-GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred HcCCCCceEEEECCC-HHHHHHHHHHhccCCEEEEEecCC
Confidence 122246999985444 445556888999999999976654
No 500
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=93.64 E-value=0.24 Score=46.35 Aligned_cols=46 Identities=33% Similarity=0.470 Sum_probs=33.5
Q ss_pred CCEEEEEccCCCHHHHHHHHHh---CCCceEEEEeCCHHHHHHHHHHHH
Q psy7837 68 GDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVK 113 (299)
Q Consensus 68 g~~vldiG~G~G~~~~~la~~~---~~~g~v~~~d~~~~~~~~a~~~l~ 113 (299)
+..|+|||||+|-+....++.. +...+|+++|.++......++.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 4579999999999987765543 345699999999987766655543
Done!