RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7837
(299 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 112 bits (281), Expect = 6e-30
Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 129 LVYGSKVLDIGSGSGYLSALFAYM-GAK--VYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
L G +VL+IGSGSGYL+A FA M G V +IEH+ L + A +N+ + EN
Sbjct: 71 LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGL-----EN 125
Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELL 245
V DGR+G+P+ APYD I++ A +IP ++DQLK GGR++ G + + L+
Sbjct: 126 VIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNGNQV-LQQF 184
Query: 246 DKFVNGSVKTTVIHPHVYI 264
DK +GSV + ++
Sbjct: 185 DKRNDGSVVIKDLEGVRFV 203
Score = 85.9 bits (213), Expect = 4e-20
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
DIP +IG+ + +P H ++LELL LK G +VLEIG+GSGYLT F MVG G V
Sbjct: 45 DIPLSIGYGQTISAPHMHAMMLELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVV 102
Query: 97 TIEHIPELLEAARKRVKA 114
+IEHIPEL+E AR+ ++
Sbjct: 103 SIEHIPELVEIARRNLEK 120
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 111 bits (281), Expect = 7e-30
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VL+IG+GSGY +A+ A + +V +IE ++ L ++A +N+ EN
Sbjct: 73 GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-----LGYENVTVRHG 127
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
DG +G+P+ APYD I ++ A ++P ++DQLK GGR++ G
Sbjct: 128 DGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSG 172
Score = 76.1 bits (188), Expect = 2e-16
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D IG + +P +L+LL LK GD+VLEIGTGSGY + +V G+V
Sbjct: 44 DRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVV 98
Query: 97 TIEHIPELLEAARKRVK 113
+IE I EL E AR+ ++
Sbjct: 99 SIERIEELAEQARRNLE 115
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 87.6 bits (218), Expect = 1e-20
Identities = 36/111 (32%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VL+IG+GSGY +A+ A++ +V+++E +K L A + +++ N
Sbjct: 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ-----LGLHNVSVRHG 133
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF-IKGHEDDIMT 241
DG +G+P AP+D I ++ A +IP +++QLK GG ++ + G E ++T
Sbjct: 134 DGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEEQQLLT 184
Score = 75.2 bits (186), Expect = 3e-16
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
+ IG + P + ELL LK GD+VLEIGTGSGY + + + +V+
Sbjct: 50 NRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAV---LAHLVRRVF 104
Query: 97 TIEHIPELLEAARKRVKA 114
++E I L A++R+K
Sbjct: 105 SVERIKTLQWEAKRRLKQ 122
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 83.7 bits (207), Expect = 3e-19
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 8/108 (7%)
Query: 126 YGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
L G KVL+IG+GSGY +A+ A + V +IE + L ++A + +R+ + L
Sbjct: 72 LLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK----LGL 127
Query: 183 AENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
+N + DG +G+ APYD IY++ A IP ++DQLK GG ++
Sbjct: 128 -DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILV 174
Score = 78.3 bits (193), Expect = 3e-17
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P IG+ + +P ++ ELL LK G KVLEIGTGSGY + +VG G V
Sbjct: 49 DTPLEIGYGQTISAPHMVAMMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVV 106
Query: 97 TIEHIPELLEAARKRVK 113
+IE IPEL E A +R++
Sbjct: 107 SIERIPELAEKAERRLR 123
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 82.2 bits (203), Expect = 6e-18
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 8/106 (7%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK---VYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
L G +VL+IG G+GY +A+ + + + V ++E+ + +C+ A +N+RR E
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-----IE 131
Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
N FVC DG G P+ APYDVI+++ + ++P QLK GGR++
Sbjct: 132 NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVI 177
Score = 41.8 bits (98), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
L G +VLEIG G+GY + +VG G V ++E+ ++ E A++ V+
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR 126
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 79.7 bits (197), Expect = 8e-18
Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 8/102 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G KVL+IG+GSGY +A+ A + KV IE + L ++A K +++ +N E
Sbjct: 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK-----LGYDNVEV 131
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
+ DG GY + APYD IY++ A DIP +++QLK GG M+
Sbjct: 132 IVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMV 173
Score = 71.2 bits (175), Expect = 1e-14
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P IG+ + + ++ ELL LK G KVLEIGTGSGY + +VG SGKV
Sbjct: 48 DTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVV 105
Query: 97 TIEHIPELLEAARKRVKA 114
TIE IPEL E A+K +K
Sbjct: 106 TIERIPELAEKAKKTLKK 123
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 63.5 bits (155), Expect = 7e-13
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G++VLDIG G+G L+ A + GA+V ++ + + A +N + L FV
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLA-----LGPRITFV 56
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPWH---IVDQLKLGGRMLF 231
D +D ++I D+ + LK GGR++
Sbjct: 57 QGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
Score = 38.8 bits (91), Expect = 3e-04
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 121
G +VL+IG G+G L A + +V ++ PE+LE AR+ K I
Sbjct: 2 GARVLDIGCGTGSLAIEL-ARLFPGARVTGVDLSPEMLELARENAKLALGPRIT 54
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 65.6 bits (160), Expect = 8e-13
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 132 GSKVLDIGSGSGYLSALFAY---MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G K+L++G+GSGY +A+ A KVY +E VK L A +NI R + E +
Sbjct: 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER-LGYWGVVEVYH- 130
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
DG+RG AP+D I ++ A IP +V QLK GG ++
Sbjct: 131 --GDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLV 170
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 64.3 bits (157), Expect = 1e-11
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G +VL+IGSG GY +AL A + +V ++ +++ RA R A A
Sbjct: 83 GMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRA-----RACLAAAGYPQVTV 136
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
V AD G P+ APYD I ++ DIP +DQL GGR++
Sbjct: 137 VLADAEAGVPELAPYDRIIVTVGAWDIPPAWLDQLAPGGRLV 178
Score = 43.1 bits (102), Expect = 1e-04
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
G +VLEIG+G GY L +VG SG+V T++ ++ + AR + A
Sbjct: 83 GMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRARACLAA 128
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 62.0 bits (151), Expect = 6e-11
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAE---NF 186
G +VL+IG+G+GY +AL +G V ++E L RA A ALA
Sbjct: 108 GHRVLEIGTGTGYSAALLCHRLGDDNVTSVEVDPGLAARA---------ASALAAAGYAP 158
Query: 187 EFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML 230
V DG G+P APYD I + A+R +P + Q + GG +L
Sbjct: 159 TVVTGDGLLGHPPRAPYDRIIATCAVRRVPPAWLRQTRPGGVIL 202
Score = 44.7 bits (106), Expect = 3e-05
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
L++ GH +VLEIGTG+GY L +G V ++E P L A + A
Sbjct: 102 ALDVEDGH-----RVLEIGTGTGYSAALLCHRLG-DDNVTSVEVDPGLAARAASALAA 153
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 50.1 bits (120), Expect = 4e-08
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 134 KVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192
+VLD+G G+G L+ A GA+V ++ + A K LA+N E + D
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-----LADNVEVLKGD 55
Query: 193 GRRGYPDA-APYDVIYIS---QAIRDIPWHIVDQ----LKLGGRMLFI 232
P+A +DVI + + +++ LK GG ++
Sbjct: 56 AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
Score = 32.4 bits (74), Expect = 0.062
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 121
+VL++G G+G L + G +V ++ P LE ARK A ++
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVE 50
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 50.8 bits (122), Expect = 2e-07
Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 50 SPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 109
P D ++ L + G +VLE GTGSG LT VG G V T E + + AR
Sbjct: 79 YPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136
Query: 110 KRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCK 167
+ + R+ K+ D+ G A+F + +EHV + K
Sbjct: 137 ENLSEFG--LGDRVTL--------KLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALK 186
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 45.1 bits (107), Expect = 3e-06
Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 23/119 (19%)
Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G +VLD G+GSG A G A+V +E A RR LA V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA----RRRLALAGLAPRVRVV 56
Query: 190 CADGRRGYPDAAP--YDVIYI----------SQAIRDIPWHIVDQ----LKLGGRMLFI 232
D R + +D++ + RD+ + LK GG ++ I
Sbjct: 57 VGDARE-LLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVI 114
Score = 36.3 bits (84), Expect = 0.004
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
GD+VL+ G GSG A G +V +E PE AR+R+
Sbjct: 1 GDRVLDPGAGSGAFLLAA-ARAGPDARVVGVELDPEAAALARRRLALAG 48
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 46.1 bits (110), Expect = 4e-06
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G ++ DIG+G+G ++ +A G +V AIE ++ + A++ I R A + +N E V
Sbjct: 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIE--RD--EEALELIERNAARFGV-DNLEVV 89
Query: 190 CADGRRGYPDAAPYDVIYI--SQAIRDIPWHIVDQLKLGGRML 230
D PD D I+I I +I ++LK GGR++
Sbjct: 90 EGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV 132
Score = 36.5 bits (85), Expect = 0.008
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
L L L + GD++ +IG G+G +T + A+ G SG+V IE E LE +
Sbjct: 24 ALTLSKLR--PRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALELIER 76
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 45.5 bits (108), Expect = 4e-06
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G KVLD+G G+GYL+ + A GA+V I+ + ++A +N ++ EN EF
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK-----LGYENVEF 58
Query: 189 VCAD----GRRGYPDAAPYDVIYISQAIRDIPWH------IVDQLKLGGRMLFIKGHEDD 238
+ D + D +DV+ ++ + +P I+ LK GG ++
Sbjct: 59 IQGDIEELPQLQLED-NSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLS 117
Query: 239 IMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKR 275
+ L D + V+ + +L ++ +
Sbjct: 118 ELPALLED---LERLYAGVLEGAIGKKKLLTILREAG 151
Score = 44.0 bits (104), Expect = 1e-05
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 124
LK G KVL++G G+GYLT + +G +V I+ E +E A++ K + +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL---GYENVE 57
Query: 125 FY 126
F
Sbjct: 58 FI 59
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 43.8 bits (104), Expect = 5e-06
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 28/108 (25%)
Query: 136 LDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194
LD+G G+G L+ A GA+V ++ + A K +FV D
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAE 49
Query: 195 R-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
+PD + +DV+ S + H+ D LK GG+++
Sbjct: 50 DLPFPDES-FDVVVSSLVL----HHLPDPERALREIARVLKPGGKLVI 92
Score = 30.3 bits (69), Expect = 0.25
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 72 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVY 131
L++G G+G L G +V ++ PE+L ARKR K V
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKRAPRK-------------FVV 45
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
G D+ + + + H+ + +RA++ I R
Sbjct: 46 GD-AEDLPFPDESFDVVVS-----SLVLHHLPDP-ERALREIAR 82
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 45.9 bits (109), Expect = 6e-06
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
L L L+ GD +L+IG G+G +T +VG +GKVY ++ + + R+
Sbjct: 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA 85
Score = 39.4 bits (92), Expect = 8e-04
Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 96 YTIEHIP-ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS---ALFAY 151
Y I IP E E + K E ++ L G +LDIG G+G ++ +L
Sbjct: 5 YVIPGIPDEEFERDEEIPMTKEEIRALALS-KLRLRKGDMILDIGCGTGSVTVEASLLVG 63
Query: 152 MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAP-YDVIYISQ 210
KVYA++ ++A+ RR A + N + + +D I+I
Sbjct: 64 ETGKVYAVDKD----EKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119
Query: 211 AIRDIPWHI---VDQLKLGGRMLFIKGHEDDIMTLELLDK 247
+ I + +K GGR++ D + LE ++
Sbjct: 120 GSEKLKEIISASWEIIKKGGRIVI------DAILLETVNN 153
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 44.1 bits (105), Expect = 2e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VL++G+GSG ++ + A G KV ++ + A N + E + +
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR---NNGVEVIRS 80
Query: 192 DGRRGYPDAAPYDVI 206
D + +DVI
Sbjct: 81 DLFEPF-RGDKFDVI 94
Score = 33.3 bits (77), Expect = 0.088
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 68 GDKVLEIGTGSGYLTTLFGAM 88
GD+VLE+GTGSG + +
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKN 44
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 43.0 bits (102), Expect = 7e-05
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
ELL ++ GD+VL++G G G VG G+V I+ +L A++R
Sbjct: 11 TFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG 66
Score = 38.8 bits (91), Expect = 0.002
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G +VLD+G G G + A +G +V I+ + + A R A L N EF
Sbjct: 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA---KERAA---GLGPNVEF 73
Query: 189 VCADGRR-GYPDAAPYDVIYISQA---IRDIP---WHIVDQLKLGGR 228
V D +PD + +D + + + D I L+ GGR
Sbjct: 74 VRGDADGLPFPDGS-FDAVRSDRVLQHLEDPARALAEIARVLRPGGR 119
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 42.3 bits (100), Expect = 1e-04
Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 16/151 (10%)
Query: 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHL 129
++LEIGT GY + G++ TIE E E AR+ + +A RI L
Sbjct: 62 RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAG-VDDRI----EL 115
Query: 130 VYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+ G LD+ S S ++ A +RA+ +R G + +A+N F
Sbjct: 116 LLGGDALDVLSRLLDGSFDLVFIDA---DKADYPEYLERALPLLRPG--GLIVADNVLF- 169
Query: 190 CADGRRGYPDAAPYDVIY--ISQAIRDIPWH 218
GR P + +
Sbjct: 170 --GGRVADPSIRDARTQVRGVRDFNDYLLED 198
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 41.1 bits (97), Expect = 3e-04
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
+K GDKVL++ G+G + L VG +G+V ++ +LE AR+++K K ++ +
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106
Score = 37.6 bits (88), Expect = 0.004
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G KVLD+ G+G ++ L A +V ++ +++ + A + +++ +N EFV
Sbjct: 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----QNVEFV 106
Query: 190 CADGRR-GYPDAAPYDVIYISQAIRDIP 216
D +PD + +D + IS +R++
Sbjct: 107 VGDAENLPFPDNS-FDAVTISFGLRNVT 133
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 38.5 bits (90), Expect = 5e-04
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 135 VLDIGSGSGYLSALFAYMG-AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG 193
+LD+G G+G + A G + V ++ K + A + +R P + FV AD
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKV------RFVVADA 54
Query: 194 RRGYPDAAPYDVIYIS 209
R + +D++ +
Sbjct: 55 RDLPFEEGSFDLVICA 70
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 40.5 bits (96), Expect = 5e-04
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 101 IP-----ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS-ALFAYM-G 153
IP EL+EAA +R+K +VLD+G+GSG ++ AL
Sbjct: 68 IPRPETEELVEAALERLKKGPL----------------RVLDLGTGSGAIALALAKERPD 111
Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI-----YI 208
A+V A++ A KN R +N EF+ +D P +D+I YI
Sbjct: 112 ARVTAVDISPEALAVARKNAAR-----LGLDNVEFLQSDWFEPLPG-GKFDLIVSNPPYI 165
Query: 209 SQA 211
+A
Sbjct: 166 PEA 168
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 39.6 bits (93), Expect = 6e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
G VLD+G+G+G L+ A +GA V A++ + A++ R A L + EFV
Sbjct: 46 GKTVLDLGAGTGILAIGAALLGASRVLAVD----IDPEALEIARANAE--ELLGDVEFVV 99
Query: 191 ADGRR 195
AD
Sbjct: 100 ADVSD 104
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
+K G KVL +G SG + +VG G VY +E P EL+ A+KR
Sbjct: 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKR 121
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 39.8 bits (93), Expect = 7e-04
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VLD G G+G LS A GA V A++ + + + A R A +A N EF
Sbjct: 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMA----RNRAQGRDVAGNVEFEVN 111
Query: 192 D-----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQL--KLGGRMLFIKGHEDDI-MTLE 243
D G + DV+ I D+ + L R++F + L+
Sbjct: 112 DLLSLCGE--FDIVVCMDVL-IHYPASDMA-KALGHLASLTKERVIFTFAPKTAWLAFLK 167
Query: 244 LLDKFVNGSVKTTVIHPH 261
++ + GS + T + H
Sbjct: 168 MIGELFPGSSRATSAYLH 185
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 40.0 bits (94), Expect = 8e-04
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 30/119 (25%)
Query: 103 ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIE 160
L+EAA + + ++LD+G+GSG ++ A G A+V A++
Sbjct: 98 LLVEAALALLLQLDK----------------RILDLGTGSGAIAIALAKEGPDAEVIAVD 141
Query: 161 HVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI-----YISQAIRD 214
+ A+ R A V +D +D+I YI +
Sbjct: 142 ----ISPDALALARENA-ERNGLVRVLVVQSDLFEPLRG--KFDLIVSNPPYIPAEDPE 193
Score = 34.6 bits (80), Expect = 0.047
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
LV L+ L+ ++L++GTGSG + + A G +V ++ P+ L AR+
Sbjct: 98 LLVEAALALLLQLDKRILDLGTGSGAI-AIALAKEGPDAEVIAVDISPDALALARE 152
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 39.9 bits (94), Expect = 9e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
LK G+ VL++G+G G+ L VG +GKV ++ PE+L AR
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120
Score = 29.5 bits (67), Expect = 1.9
Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 38/119 (31%)
Query: 132 GSKVLDIGSGSG---YLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
G VLD+GSG G +L+A +G KV ++ + +A N R+ N
Sbjct: 78 GETVLDLGSGGGFDCFLAA--RRVGPTGKVIGVDMTPEMLAKARANARKAG-----YTNV 130
Query: 187 EFVCADGRRGYPDAAP-----YDVIYIS-----------QAIRDIPWHIVDQLKLGGRM 229
EF R G +A P DVI IS + ++ V LK GGR
Sbjct: 131 EF-----RLGEIEALPVADNSVDVI-ISNCVINLSPDKERVFKEA--FRV--LKPGGRF 179
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 37.7 bits (88), Expect = 0.001
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEF 188
G + DIG+G+G ++ A +VYAIE +N+RR G I + E
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSNIVIVEGDAP 79
Query: 189 VCADGRRGYPDAAPYDVIYIS------QAIRDIPWHIVDQLKLGGRML 230
+ PDA +++ Q I + +L+ GGR++
Sbjct: 80 EAPEDLLPDPDA-----VFVGGSGGLLQEILEAVE---RRLRPGGRIV 119
Score = 32.3 bits (74), Expect = 0.089
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
L L L L+ GD + +IG G+G +T +V +G+VY IE PE L+ + ++
Sbjct: 9 ALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRR 65
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 38.7 bits (91), Expect = 0.002
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
+ RI Y G VL+IG G G L+ A KVYAIE L +
Sbjct: 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRD------- 69
Query: 179 AIALAENFEFVCADGRR 195
A N E + D +
Sbjct: 70 DEIAAGNVEIIEGDALK 86
Score = 36.0 bits (84), Expect = 0.014
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
GD VLEIG G G LT + + KVY IE P L E R
Sbjct: 30 GDPVLEIGPGKGALTD---ELAKRAKKVYAIELDPRLAEFLRDD 70
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 37.9 bits (89), Expect = 0.003
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 107 AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166
A +R++ +++ + G ++LD G G G LS A GAKV A + +
Sbjct: 43 AGHQRMRDTVLSWLPADG----DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMV 98
Query: 167 KRAMKNIRRGAPAIALAENFEFVCAD 192
+ A R AP LA N F D
Sbjct: 99 EEA----RERAPEAGLAGNITFEVGD 120
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 38.2 bits (89), Expect = 0.004
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 29/114 (25%)
Query: 132 GSKVLDIGSGSG----YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
G KVLD+G G G Y++ F V I+ N+ A++ AI + E
Sbjct: 267 GQKVLDVGCGIGGGDFYMAENF---DVHVVGIDLSVNMISFALER------AIGRKCSVE 317
Query: 188 FVCAD-GRRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRML 230
F AD ++ YPD + +DVIY RD HI D+ LK GG++L
Sbjct: 318 FEVADCTKKTYPDNS-FDVIY----SRDTILHIQDKPALFRSFFKWLKPGGKVL 366
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 37.8 bits (89), Expect = 0.004
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
++ GDKVL++ G+G L VG +G+V ++ +L R++++
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL 99
Score = 32.0 bits (74), Expect = 0.28
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNL--CKRAMKNIRRGAPAIALAENFEFV 189
G KVLD+ G+G L+ A V V L + + R + L+ N EFV
Sbjct: 52 GDKVLDLACGTGDLAIALA---KAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV 108
Query: 190 CADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ--------LKLGGRML 230
D +PD + +D + I+ +R++P I D+ LK GGR++
Sbjct: 109 QGDAEALPFPDNS-FDAVTIAFGLRNVP-DI-DKALREMYRVLKPGGRLV 155
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 37.7 bits (88), Expect = 0.004
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 23/110 (20%)
Query: 133 SKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
+ VLDIG G+GYL+ + A+ A + + +A + EN +F+C
Sbjct: 36 ASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS---------ENVQFIC 86
Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQLKLGGRMLF 231
D + + + +D+I + A++ W + LK GG + F
Sbjct: 87 GDAEKLPLEDSSFDLIVSNLALQ---WCDDLSQALSELARVLKPGGLLAF 133
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 36.2 bits (84), Expect = 0.013
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAI 159
YI+ + + G +VLD+G G G LS A +GA V I
Sbjct: 45 LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGI 87
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 36.1 bits (84), Expect = 0.014
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 134 KVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
++LD+G+G+G L L A AK+ +E + + A +N+ L E + + A
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA----LNPLEERIQVIEA 102
Query: 192 DGRRGYP--DAAPYDVI 206
D + A +D+I
Sbjct: 103 DIKEFLKALVFASFDLI 119
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 35.2 bits (81), Expect = 0.016
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 25/106 (23%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VLDIG G+G L L G V ++ + A F
Sbjct: 23 GGRVLDIGCGTGILLRLLRERGFDVTGVD-------------------PSPAAVLIFSLF 63
Query: 192 DGRRGYPDAAPYDVIYISQA---IRDIP--W-HIVDQLKLGGRMLF 231
D A YD+I + + D P + + LK GG +L
Sbjct: 64 DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLI 109
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGA 87
L L LK G +VL+IG G+G L L
Sbjct: 13 LARLLPRLKPGGRVLDIGCGTGILLRLLRE 42
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 35.9 bits (83), Expect = 0.017
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
LK G V E GTGSG L+ V +G +YT E + + AR+ +
Sbjct: 100 LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFR 148
Score = 28.6 bits (64), Expect = 3.9
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 93 GKVYTIEHIPELLEAA-RKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA 150
G VY ++ PEL A R + I I L GS V + G+GSG LS A
Sbjct: 63 GFVYVLQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIA 121
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 35.2 bits (82), Expect = 0.018
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
GD VLEIG G G LT ++ + +V IE P L R++ A
Sbjct: 14 GDTVLEIGPGKGALTE---ELLERAKRVTAIEIDPRLAPRLREKFAA 57
Score = 28.6 bits (65), Expect = 2.5
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G VL+IG G G L+ +V AIE L R + A A+N +
Sbjct: 14 GDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLRE-------KFAAADNLTVIHG 66
Query: 192 DGRR-GYPDAAPYDVI-----YISQAI 212
D + P PY V+ IS I
Sbjct: 67 DALKFDLPKLQPYKVVGNLPYNISTPI 93
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 35.6 bits (82), Expect = 0.020
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
L LE L V+++G GSG L ++ +G + KV I+ P +E+ARK
Sbjct: 148 LCLEWLEDLDLKDKNVIDVGCGSGIL-SIAALKLGAA-KVVGIDIDPLAVESARK 200
Score = 28.3 bits (63), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA-KVYAIE 160
V+D+G GSG LS +GA KV I+
Sbjct: 160 DKNVIDVGCGSGILSIAALKLGAAKVVGID 189
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 35.6 bits (82), Expect = 0.020
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
K GD+VL++ GSG L L VG GKV ++ E L A R + KA++ K I
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI 129
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 34.5 bits (80), Expect = 0.033
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 134 KVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
KVLD+G G G L A A +V ++ + RA+++ R A L EN E +
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVD----INARALESARANLAANGL-ENGEVFWS 88
Query: 192 DGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQ----LKLGGRMLFI 232
D +D+I IS D+ + LK GG + +
Sbjct: 89 DLYSAVEP-GKFDLI-ISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIV 139
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 34.8 bits (81), Expect = 0.037
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 134 KVLDIGSGSGYLS-ALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+VLD+G+GSG ++ AL A+V A++ A +N + G L EF+
Sbjct: 111 RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-----LGARVEFLQG 165
Query: 192 DGRRGYPDAAPYDVI-----YISQA 211
D P +D+I YI +A
Sbjct: 166 DWFEPLPG-GRFDLIVSNPPYIPEA 189
Score = 27.8 bits (63), Expect = 7.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 55 CLVLELLSGHLKYGD-KVLEIGTGSG 79
LV L L +VL++GTGSG
Sbjct: 95 ELVEWALEALLLKEPLRVLDLGTGSG 120
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 34.4 bits (80), Expect = 0.039
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAI 159
G +VLD+G G G LS A +GA V I
Sbjct: 49 GKRVLDVGCGGGILSESMARLGADVTGI 76
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 34.4 bits (79), Expect = 0.042
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE----HIPELLEAARKRVKAK 115
LK G V+++ G GY T +F VG GKVY E R A+
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR 100
Score = 28.3 bits (63), Expect = 4.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAK--VYA 158
A R KA+ + + F G L G+ V+D+ G GY + +F+ +G K VYA
Sbjct: 26 AADMARDKARHPGEV--LAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYA 78
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 34.3 bits (79), Expect = 0.055
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
L G +VLD+ +GSG L+ A GA V A++ + +RA+++ R A LA
Sbjct: 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVD----ISRRAVRSARLNA---LLAG-- 83
Query: 187 EFVCADGRRGYPDAA----PYDVI-----YISQAIRDIPW 217
V D RRG A P+DV+ Y+ P
Sbjct: 84 --VDVDVRRGDWARAVEFRPFDVVVSNPPYVPAPPDAPPS 121
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 33.5 bits (77), Expect = 0.058
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 135 VLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIR 174
V+D+G+ G S FA +V A E + + + +N++
Sbjct: 2 VIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVK 43
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 34.0 bits (79), Expect = 0.068
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAI 159
G VLD+G GSG L+ A +GAK V A+
Sbjct: 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAV 148
Score = 32.4 bits (75), Expect = 0.22
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYL 81
L LE L + G VL++G GSG L
Sbjct: 108 LCLEALEKLVLPGKTVLDVGCGSGIL 133
>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 409
Score = 34.2 bits (78), Expect = 0.068
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 87 AMVGI-----SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134
AMV I G VY+ EH+ ++ E AR K + YGH+V+GSK
Sbjct: 173 AMVIINPGNPCGSVYSYEHLNKIAETAR-----KLGILVIADEVYGHIVFGSK 220
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 33.8 bits (78), Expect = 0.070
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
GD VLEIG G G LT ++ + KV IE L E RK +
Sbjct: 30 GDVVLEIGPGLGALTE---PLLKRAKKVTAIEIDRRLAERLRKLLS 72
Score = 31.9 bits (73), Expect = 0.37
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G VL+IG G G L+ KV AIE + L +R K + L EN E +
Sbjct: 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDRRLAERLRKLLS-------LYENLEIIEG 82
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHI 219
D + + P + +S ++P++I
Sbjct: 83 DALKVDLNEFPKQLKVVS----NLPYNI 106
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 33.4 bits (77), Expect = 0.084
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRA 169
G +VLD+G G G LS A +GA V I+ + + A
Sbjct: 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVA 83
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This family
consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation of
homoserine to yield an acyl-L-homoserine. This reaction
is catalyzed by the products of the metXW genes and is
equivalent to the first step in enterobacteria,
gram-positive bacteria and fungi, except that in these
microorganisms the reaction is catalyzed by a single
polypeptide (the product of the metA gene in Escherichia
coli and the met5 gene product in Neurospora crassa). In
Pseudomonas putida, as in gram-positive bacteria and
certain fungi, the second and third steps are a direct
sulfhydrylation that converts the O-acyl-L-homoserine
into homocysteine and further methylation to yield
methionine. The latter reaction can be mediated by
either of the two methionine synthetases present in the
cells.
Length = 193
Score = 33.2 bits (76), Expect = 0.10
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
GS+VLD+G G G L +Y ++ K + R ++ G +A+ +
Sbjct: 14 GSRVLDLGCGDGSL----------LYLLQEEKQVDGRGIELDAAGVAE-CVAKGLSVIQG 62
Query: 192 DGRRG---YPDAAPYDVIYISQAIRDI--PWHIVDQ-LKLGGR 228
D +G +PD + +D + +SQ ++ P ++D+ L++G R
Sbjct: 63 DADKGLEHFPDKS-FDYVILSQTLQATRNPREVLDELLRIGRR 104
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 33.2 bits (76), Expect = 0.13
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE--HIP--ELLEAARKR 111
+K G KVL +G SG + +VG G VY +E H +L A+KR
Sbjct: 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR 180
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 33.0 bits (76), Expect = 0.14
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
+L+ D VLEIG G G LTT + + +V IE P L + ++++
Sbjct: 26 NLQESDTVLEIGPGKGALTT---ELAKRAKQVVAIEIDPRLAKRLQEKL 71
Score = 29.5 bits (67), Expect = 1.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKR 168
VL+IG G G L+ A +V AIE L KR
Sbjct: 32 TVLEIGPGKGALTTELAKRAKQVVAIEIDPRLAKR 66
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 33.0 bits (76), Expect = 0.16
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYL 81
L LE L +K G+ VL++G GSG L
Sbjct: 149 LCLEALESLVKPGETVLDVGCGSGIL 174
Score = 32.2 bits (74), Expect = 0.24
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFE-FV 189
G VLD+G GSG L+ +GAK V ++ + A +N + E ++
Sbjct: 161 GETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELN----GVEAQLEVYL 216
Query: 190 CADGRRGYPDAAPYDVIY---ISQAIRDIPWHIVDQLKLGGRMLF---IKGHEDDI 239
D G DV+ ++ + ++ I +K GG ++ ++ DD+
Sbjct: 217 PGDLPEG-----KADVVVANILADPLIELAPDIYALVKPGGYLILSGILEEQADDV 267
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 32.9 bits (72), Expect = 0.18
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSAL--FAYMGAKVYAIEHVKNLCKRAMKNIRRGA 177
+ + L G VLDIG G+G L+ L GA V ++ + A
Sbjct: 37 LLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-- 94
Query: 178 PAIALAENFEFVCADGRRG---YPDAAPYDVIYISQAIRDIPW-----HIVDQLKLGGRM 229
A +FV AD G + D+A +D++ + +P ++ LK GGR+
Sbjct: 95 ---AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRL 151
Query: 230 LFIKGHEDDIMTLEL 244
+ D ++ L
Sbjct: 152 VLSDLLRDGLLEGRL 166
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLT 82
+ + + + L++ L L G VL+IG G+G L
Sbjct: 4 LSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRL- 62
Query: 83 TLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
L + G V ++ PE+L AR R + + +
Sbjct: 63 ALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFV 103
>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase.
RNA cap guanine-N2 methyltransferases such as
Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2
catalyze methylation of the exocyclic N2 amine of
7-methylguanosine.
Length = 165
Score = 31.5 bits (72), Expect = 0.27
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+LD+ G+G + FA + V I+ A N +++ F+
Sbjct: 1 ARIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAE----VYGVSDRIWFILG 56
Query: 192 D----GRRGYPDAAPYDVIYISQAIRDIPW 217
D + PYD +++S PW
Sbjct: 57 DWFELLAKLKFGKIPYDCVFLS-----PPW 81
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 32.0 bits (72), Expect = 0.34
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHV-KNL 165
G K +DIG G G LS A MGA V ++ V KN+
Sbjct: 132 GLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNV 166
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 31.4 bits (72), Expect = 0.35
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G++VLD+ +GSG L AL A+V +E K+ ++A+K ++ A+ L +
Sbjct: 44 GARVLDLFAGSGALGLEALSRGA-ARVVFVE--KD--RKAVKILKENLKALGLEGEARVL 98
Query: 190 CADGRRGYP---DAAPYDVIYI 208
D R P+D++++
Sbjct: 99 RNDALRALKQLGTREPFDLVFL 120
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 31.9 bits (73), Expect = 0.36
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYL 81
L LE L LK G VL++G GSG L
Sbjct: 151 LCLEALEKLLKKGKTVLDVGCGSGIL 176
Score = 30.7 bits (70), Expect = 0.88
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAI 159
G VLD+G GSG L+ A +GAK V +
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGV 191
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 31.0 bits (71), Expect = 0.54
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
GD VLEIG G G LT ++ + +V IE L E ++R
Sbjct: 31 GDNVLEIGPGLGALTE---PLLERAARVTAIEIDRRLAEVLKERFA 73
Score = 28.3 bits (64), Expect = 3.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIE 160
G VL+IG G G L+ A+V AIE
Sbjct: 31 GDNVLEIGPGLGALTEPLLERAARVTAIE 59
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 31.3 bits (71), Expect = 0.66
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 87 AMVGIS-----GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134
AMV I+ G VY+ EH+ ++ E AR K + Y HL +GSK
Sbjct: 193 AMVIINPNNPCGSVYSYEHLAKIAETAR-----KLGILVIADEVYDHLTFGSK 240
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 30.5 bits (69), Expect = 0.75
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 19/126 (15%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G+K LD+ G+G + + G+ KV ++ +N+ K K + N EF
Sbjct: 48 GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG-----KYNIEF 102
Query: 189 VCADGRR-GYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHEDDIMT 241
+ + + D + +D++ IS +R+ P LK GGR++ + E
Sbjct: 103 LQGNAEELPFEDDS-FDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCL---EFSKPE 158
Query: 242 LELLDK 247
LL +
Sbjct: 159 NPLLSQ 164
Score = 30.5 bits (69), Expect = 0.77
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
K G+K L++ G+G T G SGKV ++ +L+ K+ K
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAK 93
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 30.7 bits (70), Expect = 0.79
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
L G +LDIG G G L+ A G V + + A K I A L +N
Sbjct: 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIA----ARGLEDNV 124
Query: 187 EFVCADGRRGYPDAA-PYDVI 206
E D Y D P+D I
Sbjct: 125 EVRLQD----YRDFEEPFDRI 141
Score = 29.1 bits (66), Expect = 2.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARK 110
L+LE L LK G +L+IG G G Y +G V G+ T+ E L A K
Sbjct: 63 LILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGV-----TLS--EEQLAYAEK 113
Query: 111 RVKA 114
R+ A
Sbjct: 114 RIAA 117
>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 30.8 bits (70), Expect = 0.83
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 132 GSKVLDI----GSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENF 186
G +VLD+ G + +L+ L GA V A++ KR +N++R G N
Sbjct: 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG------VRNV 210
Query: 187 EFVCADGRR---GYPDAAPYDVI 206
V D RR P +D I
Sbjct: 211 IVVNKDARRLAELLPGGEKFDRI 233
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 30.4 bits (69), Expect = 0.92
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 69 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
D VLEIG G+G LT ++ ++ KV IE P ++ +KR +
Sbjct: 38 DTVLEIGPGTGNLTEK---LLQLAKKVIAIEIDPRMVAELKKRFQN 80
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 224 KLGGRMLFIKGHEDDIMTLE----LLDKFVNGSVKTTVIHPHVYI 264
+ R+LFI ED LE LL + ++ T ++ HVYI
Sbjct: 164 EKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYI 208
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 29.9 bits (67), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIR 174
D+G+GSG LS + A+ +V AIE + A +N+
Sbjct: 36 FADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLH 75
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 29.9 bits (68), Expect = 1.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
G KVL++ G+G L GKV ++ E+LE A+K+ +
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPL 88
Score = 29.2 bits (66), Expect = 2.4
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 131 YGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
G KVLD+ G+G L+ A + V + ++ ++ + N EF+
Sbjct: 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGV-DFSSEMLEVAKKKSELPL---NIEFIQ 94
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIP 216
AD + D + +D + I+ +R++
Sbjct: 95 ADAEALPFEDNS-FDAVTIAFGLRNVT 120
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 29.6 bits (67), Expect = 1.6
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
+K G KVL +G SG + +VG G++Y +E P ELL+ A KR
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR 123
>gnl|CDD|180387 PRK06078, PRK06078, pyrimidine-nucleoside phosphorylase; Reviewed.
Length = 434
Score = 29.7 bits (67), Expect = 1.9
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 27/128 (21%)
Query: 11 LLDIPHNIGHNAFMESPSDYPVL--TLLDIPHNIGHNAF-----MESPSDHCL--VLELL 61
+LD+ G AFM++ D L ++ I +N+G N M P + LE+L
Sbjct: 197 VLDV--KTGAGAFMKTVEDAEELAHAMVRIGNNVGRNTMAVISDMSQPLGRAIGNALEVL 254
Query: 62 SGHLKYGDKVLEIGTGSG------YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA- 114
+ ++ G G + TL MV ++GK T+E E L KA
Sbjct: 255 --------EAIDTLQGKGPKDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKAL 306
Query: 115 -KAETYIK 121
K + ++
Sbjct: 307 EKFKEFLS 314
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 29.2 bits (65), Expect = 2.1
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 133 SKVLDIGSGSG----YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
SKVLDIGSG G Y++ + GA V+ ++ + + + +R E +
Sbjct: 54 SKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMV--NIAKLRNSDKNKIEFEANDI 108
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPW 217
+ D +P+ +D+IY AI + +
Sbjct: 109 LKKD----FPENT-FDMIYSRDAILHLSY 132
>gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function
prediction only].
Length = 207
Score = 29.0 bits (65), Expect = 2.7
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 88 MVGISGKVYTIEHIPELLEAARKRVKAK-AETYIKRINFY 126
++GI+G + + +L EA + + AE I R+
Sbjct: 3 ILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEK 42
>gnl|CDD|150280 pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R).
SpoIIR is designated stage II sporulation protein R. A
comparative genome analysis of all sequenced genomes of
Firmicutes shows that the proteins are strictly
conserved among the sub-set of endospore-forming
species. SpoIIR is a signalling protein that links the
activation of sigma E to the transcriptional activity of
sigma F during sporulation.
Length = 132
Score = 27.9 bits (63), Expect = 3.3
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI-EHIPELLEAARKRVKAKAETY---- 119
LK D+VLE YLT I I E++PE+ E A K +K + Y
Sbjct: 24 LKVRDEVLE------YLTPKLEDSKSIEEARRVIKENLPEIEEIAEKVIKEEGYDYPVKV 77
Query: 120 -IKRINF----YGHLVYGS------KVLDIGSGSG 143
+ + +F YG++ + ++ IG G G
Sbjct: 78 ELGKFSFPTKLYGNITLPAGEYEALRIT-IGEGEG 111
>gnl|CDD|220208 pfam09369, DUF1998, Domain of unknown function (DUF1998). This
family of proteins are functionally uncharacterized.
They are mainly found in helicase proteins so could be
RNA binding. This family includes a probable zinc
binding motif at its C-terminus.
Length = 82
Score = 27.2 bits (61), Expect = 3.5
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 89 VGISGKVYTIEHIPELLEAARKRVKA 114
G G+++ E + ELLE A + ++
Sbjct: 48 AGYLGRLF--ERLEELLERALELLED 71
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 27.3 bits (61), Expect = 4.1
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 136 LDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADG 193
LDIG G+G L G + ++ + A + + A+ +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDV----L 56
Query: 194 RRGYPDAAPYDVIYIS---QAIRDIPW---HIVDQLKLGGR 228
D +DV+ S + D ++ LK GG
Sbjct: 57 DAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97
>gnl|CDD|225789 COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate
transport and metabolism].
Length = 808
Score = 28.9 bits (65), Expect = 4.3
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 21/79 (26%)
Query: 212 IRDIPWHIVDQLKLGGRMLFIKG---HEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELK 268
R + L + G+ +FI+G HEDD +L + + +LK
Sbjct: 283 FRTVEIK-DGLLLINGKPVFIRGVNRHEDDP----ILGRVTDED---------AMERDLK 328
Query: 269 SLEDQK----RMFHYYNTP 283
+++ R HY N+
Sbjct: 329 LMKEANMNSVRTSHYPNSE 347
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 28.3 bits (63), Expect = 4.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYA 158
G V D G G+G L+ A GA V A
Sbjct: 145 GVTVCDAGCGTGSLAIPLALEGAIVSA 171
>gnl|CDD|188022 TIGR00095, TIGR00095, RNA methyltransferase, RsmD family. This
model represents a family of uncharacterized bacterial
proteins. Members are present in nearly every complete
bacterial genome, always in a single copy. PSI-BLAST
analysis shows homology to several families of
SAM-dependent methyltransferases, including ribosomal
RNA adenine dimethylases [Protein synthesis, tRNA and
rRNA base modification].
Length = 190
Score = 28.1 bits (63), Expect = 4.7
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G+ LD+ +GSG L AL A +E + + + +N+ + + V
Sbjct: 51 GAHFLDLFAGSGALGLEALSRG-AASAVFVEQDRKVAQTLKENLS----TLKKSGEQATV 105
Query: 190 CADGRRGYPDAA----PYDVIYISQAIRDIPWH 218
D R A P+D+IY+ D P++
Sbjct: 106 LNDAVRALLFLAKKQTPFDIIYL-----DPPFN 133
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 27.5 bits (62), Expect = 5.0
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 135 VLDIGSGSGYLSALFAY------MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
V+D G+G GYL + Y G +V I+ L ++A ++ + + F
Sbjct: 29 VVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQK----LGFNKRMSF 84
Query: 189 VCAD 192
+
Sbjct: 85 LEGT 88
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 27.7 bits (62), Expect = 5.2
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 28/118 (23%)
Query: 129 LVYGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEH--------VKNLCKRAMKNIR--RG 176
L ++D+G+G+G +S A + +V AIE +N + NI G
Sbjct: 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG 88
Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGR--MLFI 232
I L + + G G A I W + L GGR + FI
Sbjct: 89 EAPIELPGKADAIFIGGSGGNLTAI-------------IDWSL-AHLHPGGRLVLTFI 132
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit
alpha; Provisional.
Length = 339
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 155 KVYAIEHVKNLCKRAMKNIR-RGAPAIALAENFEFVCADGRRGYPD 199
KV + +++LC+ A+K++R RGAPA+ A + A D
Sbjct: 26 KVIECKTLESLCE-AIKSLRVRGAPALGAAGGYGIALAARLSKAKD 70
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 28.4 bits (63), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 93 GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSK 134
G VY+ +H+ ++ E A K + + YGHL +GS
Sbjct: 183 GNVYSYQHLKKIAETAE-----KLKILVIADEVYGHLAFGSN 219
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 27.9 bits (63), Expect = 6.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 132 GSKVLDIGSGSGY 144
G VLD+G G+GY
Sbjct: 123 GRTVLDVGCGNGY 135
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 28.0 bits (63), Expect = 6.2
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
G +VLD+ G G A KV+ +E + A +N
Sbjct: 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA 337
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 27.7 bits (62), Expect = 6.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 132 GSKVLDIGSGSGYLSALFA 150
GS+VLD+G G G L AL
Sbjct: 14 GSRVLDLGCGDGELLALLR 32
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 28.1 bits (63), Expect = 6.7
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 93 GKVYTIEHIPELLEAARKRVKAKAETYIKRI--NFYGHLVYGSK 134
G V++ +H+ ++ E A K I I YGH+V+G
Sbjct: 183 GSVFSRDHLQKIAEVAEKL-------GIPIIADEIYGHMVFGDA 219
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 134 KVLDIGSGSGYLSALFAYMGAKV 156
KVLD+G G+G LSA+ A K+
Sbjct: 199 KVLDVGCGAGVLSAVLARHSPKI 221
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 27.5 bits (61), Expect = 7.5
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
++ G L++ G+ + VG G V ++ +L R++VK ++ +
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 27.4 bits (61), Expect = 7.9
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 129 LVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
V G +VLD+G+GSG ++ A GA V A + L + N +I
Sbjct: 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH 133
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 27.8 bits (62), Expect = 8.7
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 195 RGYPDAAPYDVIYISQAIRDIP---WH-IVDQLKLGG--RMLF----IKGHEDDIMTLEL 244
R P AAP + + R W +VDQLKL G R L +K +D + L +
Sbjct: 381 RAVPTAAPAAPAAATPSDRQSFNGNWRALVDQLKLSGLARELAQNCELKSFSEDRIELRV 440
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 25.9 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 50 SPSDHCLVLELL--SGHLKYGDKVLEIGTGSGYLTTLFGAMV 89
S + L L+ G LK GD VL +G G+G +GA V
Sbjct: 49 SAASIPLALDEAVEEGKLKPGDLVLLVGFGAGL---TWGAAV 87
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 27.5 bits (61), Expect = 9.0
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCAD 192
V+D G G + A V IE V ++A +N A N EF+
Sbjct: 295 LVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLAGT 348
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 27.6 bits (62), Expect = 9.2
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 19/68 (27%)
Query: 222 QLKLGGRMLF--IKGHEDDIMTLELLDKFVN-----------GSVKTTVIHPHVYIHELK 268
Q+ G + +KG LE KF+N G V++ V HP H
Sbjct: 280 QMSGYGGVFSFELKG------GLEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQL 333
Query: 269 SLEDQKRM 276
E++
Sbjct: 334 PPEERAAA 341
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 27.8 bits (62), Expect = 9.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI 98
S + L EL+S + YG I G + FG M G++G Y++
Sbjct: 902 ELLESANKLANELVSKAITYG-----INQGLNHANESFGLMNGVTGIGYSL 947
>gnl|CDD|227226 COG4889, COG4889, Predicted helicase [General function prediction
only].
Length = 1518
Score = 27.9 bits (62), Expect = 9.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 156 VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR------GYPDAAPYDVI 206
+YAI H K ++ ++ + AP IAL+E+F+ + G+ Y +D I
Sbjct: 1357 IYAIFHHKGYLEKYKNDLAKEAPRIALSEDFKELSMLGKELADLHLNYESGEMWDSI 1413
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,026,814
Number of extensions: 1593337
Number of successful extensions: 1853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1811
Number of HSP's successfully gapped: 167
Length of query: 299
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 203
Effective length of database: 6,679,618
Effective search space: 1355962454
Effective search space used: 1355962454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)