RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7837
(299 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 138 bits (351), Expect = 4e-40
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
L G+K LD+GSGSG L+A FA M KV I+H+K L ++ N+R+ P + +
Sbjct: 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG 133
Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
+ V DGR GY + APYD I++ A +P ++DQLK GGR++ G LE
Sbjct: 134 RVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQ 193
Query: 245 LDKFVNGSVKTTVIHP 260
DK +GS+K +
Sbjct: 194 YDKLQDGSIKMKPLMG 209
Score = 104 bits (261), Expect = 5e-27
Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P +IG A + +P H LELL L G K L++G+GSG LT F MVG +GKV
Sbjct: 47 DSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVI 106
Query: 97 TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132
I+HI EL++ + V+ T + LV G
Sbjct: 107 GIDHIKELVDDSVNNVRKDDPTLLSSGRV--QLVVG 140
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 135 bits (341), Expect = 1e-38
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM--------GAKVYAIEHVKNLCKRAMKNIRRGAPA 179
HL G+++LD+GSGSGYL+A F ++ IEH L +R+ N+ +
Sbjct: 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140
Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDI 239
+ + V DGR+GYP APY+ I++ A D P +++QL GGR++ G +
Sbjct: 141 MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVGPDGGS 200
Query: 240 MTLELLDKFVNGSVKTTVIHP 260
++ DK NG V+ T +
Sbjct: 201 QYMQQYDKDANGKVEMTRLMG 221
Score = 97.7 bits (244), Expect = 2e-24
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG--- 93
D P IG + +P H LE L HLK G ++L++G+GSGYLT F + G
Sbjct: 54 DAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDA 113
Query: 94 --KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG 132
++ IEH EL+ ++ + + + +V G
Sbjct: 114 DTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL--LIVEG 152
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 129 bits (326), Expect = 2e-36
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G KVL+IG+G GY +AL A + KV ++E + + A K + N + +
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY-------YNNIKLILG 123
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNG 251
DG GY + PYD + + + +QLK GG M+ G + L + K N
Sbjct: 124 DGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG-VGRVQKLYKVIKKGNS 182
Query: 252 SVKTTV 257
+
Sbjct: 183 PSLENL 188
Score = 87.7 bits (218), Expect = 9e-21
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 42 IGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 101
I + + +L+ L L G KVLEIGTG GY T L +V KV ++E
Sbjct: 47 ILPGINTTALNLGIFMLDEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEIN 101
Query: 102 PELLEAARKRVKA 114
++ A K +
Sbjct: 102 EKMYNYASKLLSY 114
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 125 bits (317), Expect = 4e-35
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
+L G +L++G+GSG+ +AL + + VY IE + L + A +N+ R A +N
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLER-----AGVKNV 142
Query: 187 EFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLD 246
+ DG +G+P APYDVI ++ IP +++QLK+GG+++ G L +
Sbjct: 143 HVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVR 202
Query: 247 KFVNGSVKTTV 257
K +G
Sbjct: 203 KTKDGIKIKNH 213
Score = 92.3 bits (230), Expect = 2e-22
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P I + +P ++LE+ +LK G +LE+GTGSG+ L +V VY
Sbjct: 63 DEPLPIPAGQTVSAPHMVAIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVY 118
Query: 97 TIEHIPELLEAARKRVKA 114
TIE IPEL+E A++ ++
Sbjct: 119 TIERIPELVEFAKRNLER 136
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 123 bits (311), Expect = 2e-34
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
S+VL+IG+GSGY +A+ A++ V ++E +K L +A + ++ N
Sbjct: 78 QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKN-----LDLHNVSTRHG 132
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
DG +G+ AP+D I ++ A +IP ++ QL GG ++ G E +
Sbjct: 133 DGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEHQYLKR 183
Score = 86.9 bits (216), Expect = 1e-20
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
+I IG + P + ELL L +VLEIGTGSGY T + +V V
Sbjct: 49 NIALPIGQGQTISQPYMVARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLV---QHVC 103
Query: 97 TIEHIPELLEAARKRVKA 114
++E I L AR+R+K
Sbjct: 104 SVERIKGLQWQARRRLKN 121
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 123 bits (310), Expect = 3e-34
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G KVL+IG+G GY +A+ A + V +IE + L ++A + +R+ +N
Sbjct: 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK-----LGYDNVIV 132
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
+ DG GY APYD IY + A IP ++ QLK GG++L G + L L +K
Sbjct: 133 IVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVG--RYLQRLVLAEKR 190
Query: 249 VNGSVKTTV 257
+ +
Sbjct: 191 GDEIIIKDC 199
Score = 95.7 bits (239), Expect = 7e-24
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P IG+ + + ++ ELL LK G KVLEIGTG GY + +VG G V
Sbjct: 49 DTPLEIGYGQTISAIHMVGMMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV 106
Query: 97 TIEHIPELLEAARKRVKA 114
+IE IPEL E A + ++
Sbjct: 107 SIERIPELAEKAERTLRK 124
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 122 bits (309), Expect = 5e-34
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYM-------GAKVYAIEHVKNLCKRAMKNIRRGAPAI 180
L GS+ +D+GSGSGYL+ A + V +E VK+L +++NI+R P +
Sbjct: 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL 136
Query: 181 ALAENFEFVCAD----GRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHE 236
+NF+ + + + +D I++ + ++P +VD L G+++ E
Sbjct: 137 LKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE-E 195
Query: 237 DDIMTLELLDKFVNGSVKTTVIHP 260
D L + K NG + +
Sbjct: 196 DYTQVLYEITK-KNGKIIKDRLFD 218
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 121 bits (305), Expect = 2e-32
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G +VL+IG G+GY +A+ + + V ++E+ + +C+ A +N+ R EN F
Sbjct: 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVER-----LGIENVIF 130
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
VC DG G P+ +PYDVI+++ + ++P QLK GGR++ + L K
Sbjct: 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK 190
Query: 249 VNGSVKTTVIHP 260
+ +
Sbjct: 191 KDPYLVGNYKLE 202
Score = 87.9 bits (218), Expect = 3e-20
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 36 LDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 95
L + + PS L +E + L G +VLEIG G+GY + +VG G V
Sbjct: 46 LVSYDDGEEYSTSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLV 103
Query: 96 YTIEHIPELLEAARKRVKA 114
++E+ ++ E A++ V+
Sbjct: 104 VSVEYSRKICEIAKRNVER 122
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 67.4 bits (165), Expect = 1e-13
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+D+G G+G ++ A +VYAI+ N++R L +N +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR----HGLGDNVTLMEG 89
Query: 192 DGRRGYPDAAPYDVIYI---SQAIRDIPWHIVDQLKLGGRM 229
D D+ + +++I I D+LK GGR+
Sbjct: 90 DAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRI 130
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 68.3 bits (166), Expect = 3e-13
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 13/142 (9%)
Query: 34 TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
L D + + P D ++L ++ + GD VLE G+GSG ++ VG G
Sbjct: 74 ALEDYVVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQG 131
Query: 94 KVYTIEHIPELLEAARKRVKA--------KAETYIKRINFYGHLVYGSKVLDIGSGSGYL 145
+V + E + + A+K K E + ++F + G+ S
Sbjct: 132 RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE---DIKSLTF 188
Query: 146 SALFAYMGAKVYAIEHVKNLCK 167
A+ M + K
Sbjct: 189 DAVALDMLNPHVTLPVFYPHLK 210
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 66.2 bits (161), Expect = 9e-13
Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 10/136 (7%)
Query: 33 LTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS 92
+L+D N+ + P D + +L +K GD++++ G GSG + + VG S
Sbjct: 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSS 137
Query: 93 GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
GKV+ E E + A + + + + + G + ALF +
Sbjct: 138 GKVFAYEKREEFAKLAES--------NLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV 189
Query: 153 GAKVYAIEHVKNLCKR 168
I+ K
Sbjct: 190 PDPWNYIDKCWEALKG 205
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 62.7 bits (152), Expect = 8e-12
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
++VL+ G G G +A F A+ A + L K A R AP +
Sbjct: 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLA----RANAPHA------DVYEW 98
Query: 192 DGRRG--YPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHED 237
+G+ AP+ +I + + + + L++ +
Sbjct: 99 NGKGELPAGLGAPFGLIVSRRGPTSVILRLPELAAPDAHFLYVGPRLN 146
Score = 42.3 bits (99), Expect = 6e-05
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
+ P LS L +VLE G G G FG + + PEL
Sbjct: 26 ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPEL 82
Query: 105 LEAARKRV 112
L+ AR
Sbjct: 83 LKLARANA 90
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 63.3 bits (153), Expect = 1e-11
Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 127 GHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
G G + + IG G L+ + G +V +E ++ + + K I +
Sbjct: 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-----LGVD 172
Query: 185 NFEFVCADGRRGYPDAAPYDVIYISQAIRD---IPWHIVDQLKLGGRMLFIKGHE-DDIM 240
+ D D +DV+ ++ + +I + R+++ I+
Sbjct: 173 GVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRAIL 230
Query: 241 TLELLDKFVNGSVKTTVIHPH 261
+ D + G + V+ P
Sbjct: 231 YAPVSDDDITGFRRAGVVLPS 251
Score = 49.4 bits (117), Expect = 4e-07
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
D P + + L E G + G++ + IG G LT + + V +V
Sbjct: 92 DSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVN 150
Query: 97 TIEHIPELLEAARKRVKA 114
+E P++ E +RK ++
Sbjct: 151 VVEIEPDIAELSRKVIEG 168
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 62.3 bits (151), Expect = 2e-11
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 24/176 (13%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
L++G G+G ++ G + A++ + + R+ + + V A
Sbjct: 40 EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVF----RQKIA--GVDRKVQVVQA 93
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFIKGHEDDIM 240
D R PD + + + + D LK GG +L +
Sbjct: 94 DARAIPLPDES-VHGVIVVHLW----HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASP 148
Query: 241 TLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLTPR 296
L +++ + P K L++ + P ++ R
Sbjct: 149 EWTLQERWR--AFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTREVARWREER 202
Score = 37.2 bits (86), Expect = 0.003
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
LE+G G+G + A + ++ +LE R+++
Sbjct: 40 EPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAG 83
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 61.4 bits (149), Expect = 3e-11
Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 33/209 (15%)
Query: 94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
+ + +R + E Y+K+ ++VLD+G G GY + + G
Sbjct: 25 EFWNQNSQEMWDSGSRSTIIPFFEQYVKK---------EAEVLDVGCGDGYGTYKLSRTG 75
Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAI 212
K ++ + + ++ + + F+ D + + ++ I ++
Sbjct: 76 YKAVGVDISEVMIQKGKER--------GEGPDLSFIKGDLSSLPFENEQ-FEAIMAINSL 126
Query: 213 RDIP--------WHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYI 264
V LK G + V + P +
Sbjct: 127 EWTEEPLRALNEIKRV--LKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFE 184
Query: 265 HELK----SLEDQKRMFHYYNTPPPQMDL 289
+K + D ++ L
Sbjct: 185 QLVKEQGFKVVDGIGVYKRGVNEKMLGQL 213
Score = 44.1 bits (104), Expect = 2e-05
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
++ M ++ ++K +VL++G G GY T K ++
Sbjct: 30 NSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEV 86
Query: 104 LLEAARKRVKAKAETYIK 121
+++ ++R + ++IK
Sbjct: 87 MIQKGKERGEGPDLSFIK 104
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 60.8 bits (147), Expect = 6e-11
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 34 TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
++D + + P D L++ + GD ++E G GSG LT +VG G
Sbjct: 62 RIVDYLDKMKRGPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEG 119
Query: 94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
+V + E + + A + +K + R+ +Y G + + +
Sbjct: 120 RVVSYEIREDFAKLAWENIKWA--GFDDRVTIKLKDIY------EGIEEENVDHVILDLP 171
Query: 154 AKVYAIEHVKNLCKR 168
+EH K
Sbjct: 172 QPERVVEHAAKALKP 186
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 60.2 bits (146), Expect = 1e-10
Identities = 30/176 (17%), Positives = 51/176 (28%), Gaps = 21/176 (11%)
Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKN 164
+ R+ E + G L +K LD+G+G G + G + +
Sbjct: 57 DEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV 116
Query: 165 LCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ- 222
KR LA+N D + YD I+ A H D+
Sbjct: 117 QNKRN----EEYNNQAGLADNITVKYGSFLEIPCEDNS-YDFIWSQDAFL----HSPDKL 167
Query: 223 ---------LKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269
LK G M ++D + + ++ + +Y K
Sbjct: 168 KVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 223
Score = 30.6 bits (69), Expect = 0.49
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 54 HCLVLEL-LSGHLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEA 107
L EL ++G L+ K L++G G G +L FG + + I P +
Sbjct: 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCL-----NIA--PVQNKR 120
Query: 108 ARKRVKA 114
+
Sbjct: 121 NEEYNNQ 127
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 59.7 bits (144), Expect = 1e-10
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 15/154 (9%)
Query: 14 IPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLE 73
+ ++G + P TL + ++ +A P D ++ LL G +VLE
Sbjct: 51 VRTHLGEELSVHRP------TLEEYLLHMKRSATPTYPKDASAMVTLLDLA--PGMRVLE 102
Query: 74 IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS 133
GTGSG LT VG G V + E P L A + V+A + +
Sbjct: 103 AGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVEN-------VRFHLG 155
Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCK 167
K+ + + + +E K
Sbjct: 156 KLEEAELEEAAYDGVALDLMEPWKVLEKAALALK 189
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 59.6 bits (144), Expect = 1e-10
Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 40/219 (18%)
Query: 63 GHLKYGDKVLEIGTGSGYLTTL---------FGA-----MVGIS--GKVYTIEH----IP 102
K G+ VL +L L ++G K+ E +
Sbjct: 2 NSFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKINGFEVYRPTLE 61
Query: 103 ELLEAARKRVKAKAETY-IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEH 161
E++ +R I +L +VL+ G+GSG L A+ + + +V+ E
Sbjct: 62 EIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEA 121
Query: 162 VKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYIS-QAIRDIPWHIV 220
V+ K A KN+++ L +N +F D + + ++ + +
Sbjct: 122 VEEFYKTAQKNLKK----FNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVH 177
Query: 221 DQLKLGGRMLF--------------IKGHEDDIMTLELL 245
L G + F I+ + ++ +E+L
Sbjct: 178 KSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVVEIL 216
Score = 53.8 bits (129), Expect = 1e-08
Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 37 DIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 96
I + P D + L +L +VLE GTGSG L + + G+V+
Sbjct: 63 IILLGFERKTQIIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEVA---GEVW 117
Query: 97 TIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKV 156
T E + E + A+K +K F +D +F V
Sbjct: 118 TFEAVEEFYKTAQKNLK----------KFNLGKNVKFFNVDFKDA-EVPEGIFHAAFVDV 166
Query: 157 YAIEHVKNLCKRAMKNIRR 175
H +++
Sbjct: 167 REPWHYLEKVHKSLMEGAP 185
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +LD+G G+G L+ A GA+V ++ + ++A R+ P + F A
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKA----RQNYPHL------HFDVA 107
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLF 231
D R + P D ++ + + + I LK GGR +
Sbjct: 108 DARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152
Score = 35.1 bits (81), Expect = 0.018
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
++F+ + +L+LL+ + G+ +L++G G+G LT +V ++
Sbjct: 38 KHSFVWQYGED--LLQLLN--PQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAAT 90
Query: 104 LLEAARKR 111
++E AR+
Sbjct: 91 MIEKARQN 98
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 57.7 bits (140), Expect = 2e-10
Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 28/151 (18%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
++D G G+G+ K+Y I+ K + I L++ E
Sbjct: 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDS---VITLSDPKEI--- 71
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFI--KGHEDDI---- 239
PD + D I + + D+ + LK GR++ I + I
Sbjct: 72 ------PDNS-VDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPL 124
Query: 240 ---MTLELLDKFVNGSVKTTVIHPHVYIHEL 267
M + + + V +P Y L
Sbjct: 125 SIRMDEKDYMGWFSNFVVEKRFNPTPYHFGL 155
Score = 44.6 bits (106), Expect = 6e-06
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 48 MESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107
+E P + L + +++ G G+G+ K+Y I+ L+
Sbjct: 3 LERPEE---YLPNI--FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKE 54
Query: 108 ARKRVK 113
+++
Sbjct: 55 VKEKFD 60
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 57.2 bits (138), Expect = 6e-10
Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 37/177 (20%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
VL+ G G+G L+ G VY IE + + A + L + F
Sbjct: 46 FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEK---------LPKEFSITEG 96
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ------------LKLGGRMLFIKGHEDDI 239
D + D I + A H+ D L GG+++F D
Sbjct: 97 DFLS-FEVPTSIDTIVSTYAF----HHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ 151
Query: 240 MTLELLDKFVNGSVKTTV---IHPHVY--IHELKSL------EDQKRMFHYYNTPPP 285
+ + + + Y I ++++ +++
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVME 208
Score = 38.3 bits (89), Expect = 0.001
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 117
VLE G G+G LT VY IE E+ A++++ +
Sbjct: 46 FGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFS 92
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 57.4 bits (138), Expect = 7e-10
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 33 LTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS 92
+ + I N + S D ++ L+ G +LE+G GSG +++ +
Sbjct: 78 FSPMYFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGK 135
Query: 93 GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
G + +E + L+ A + G++ + A+ A +
Sbjct: 136 GTLTVVERDEDNLKKAMDNL--------SEFYDIGNVRTSRSDIADFISDQMYDAVIADI 187
Query: 153 GAKVYAIEHVKNLCK 167
++ + ++ K
Sbjct: 188 PDPWNHVQKIASMMK 202
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 57.2 bits (138), Expect = 8e-10
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRR 175
E K ++F L +K+ DIG G+G + A Y+ ++ I+ + +
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIF----NE 87
Query: 176 GAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------LKL 225
A A+ + + + + D+I+ AI ++I + LK
Sbjct: 88 NAVKANCADRVKGITGSMDNLPFQNEE-LDLIWSEGAI----YNIGFERGMNEWSKYLKK 142
Query: 226 GGRMLF 231
GG +
Sbjct: 143 GGFIAV 148
Score = 35.6 bits (82), Expect = 0.013
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 61 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI 120
L K+ +IG G+G T V G++ I+ P+ +E + A
Sbjct: 40 FINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNEN--AVKANCA 95
Query: 121 KRINF 125
R+
Sbjct: 96 DRVKG 100
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 57.2 bits (138), Expect = 9e-10
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 27/117 (23%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
GS + DIG+G+G S A G VYA+E M+ P E+
Sbjct: 35 GSVIADIGAGTGGYSVALANQGLFVYAVEPS-----IVMRQQAVVHP------QVEWFTG 83
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFIKGHED 237
PD + D + AI H ++ G +L
Sbjct: 84 YAENLALPDKS-VDGVISILAI----HHFSHLEKSFQEMQRIIRDGTIVLLTFDIRL 135
Score = 33.3 bits (76), Expect = 0.066
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR----- 111
++ LL+ L G + +IG G+G + VY +E + + A
Sbjct: 26 IINLLN--LPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEW 80
Query: 112 VKAKAE 117
AE
Sbjct: 81 FTGYAE 86
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 57.5 bits (138), Expect = 1e-09
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 27/140 (19%)
Query: 99 EHIPELLE--AARKRVKAKAETYIKRINFY--------------------GHLVYGSKVL 136
E+ + R++ K + + Y + G+KV+
Sbjct: 39 EYRAAVATQIELWPRLRNKLPQWAGISSLYIPSRLSLEQSSGAVTSSYKSRFIREGTKVV 98
Query: 137 DIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRG 196
D+ G G ++ IE A NI + ++ + D +
Sbjct: 99 DLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPL---LLNEGKDVNILTGDFKEY 155
Query: 197 YP--DAAPYDVIYISQAIRD 214
P D IY+ A R
Sbjct: 156 LPLIKTFHPDYIYVDPARRS 175
Score = 30.5 bits (68), Expect = 0.74
Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 19/150 (12%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYG 127
G KV+++ G G F A++ + + IE E AAR + K +N
Sbjct: 94 GTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHNIPL-LLNEGKDVNIL- 148
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
G YL + + +Y ++ + + L
Sbjct: 149 ----------TGDFKEYLPLIKTFHPDYIYVDPARRSGADK--RVYAIADCEPDLIPLAT 196
Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPW 217
+ +P +I + ++ +
Sbjct: 197 ELLPFCSSILAKLSP--MIDLWDTLQSLLH 224
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 56.1 bits (135), Expect = 2e-09
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
++ KVLD+ G G S L G +V ++ +++ ++A + + + E
Sbjct: 35 YMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNV------E 88
Query: 188 FVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ--------LKLGGRMLF 231
F+ D R+ + D +D + +I ++Q LK G+ +
Sbjct: 89 FIVGDARKLSFEDKT-FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140
Score = 37.2 bits (86), Expect = 0.003
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
+ LL ++K KVL++ G G + L +V ++ +++ AR+ K++
Sbjct: 27 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSR 83
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 55.6 bits (134), Expect = 2e-09
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
G + DIG GSG +S + G + IE + + KNI L+
Sbjct: 52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT----YGLSPRMR 107
Query: 188 FVCADGRRGYPDAAPYDVIYI-SQAIRDIPWHIVDQLKLGGRM 229
V D + ++I + + + + L G R+
Sbjct: 108 AVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRI 150
Score = 33.7 bits (77), Expect = 0.040
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
L L L + G+ + +IG GSG ++ + G+ TIE + +E +K
Sbjct: 45 ALTLAAL--APRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQK 95
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 55.6 bits (134), Expect = 3e-09
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 21/112 (18%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+VLDIG+G+G+ + F+ + ++ K + + A + EN F
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-----VENVRFQQG 76
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
+PD + +D+I A H D LK GR L +
Sbjct: 77 TAESLPFPDDS-FDIITCRYAAH----HFSDVRKAVREVARVLKQDGRFLLV 123
Score = 39.8 bits (93), Expect = 6e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
+VL+IG G+G+ F V + ++ E++E A + K
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK 66
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 54.9 bits (132), Expect = 3e-09
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 37/174 (21%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
VL++ SG+GY + + + +V A++ + A R G + EF
Sbjct: 47 RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAG---RHGLDNV------EFRQQ 97
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ------------LKLGGRMLFIKGHEDDI 239
D + +D ++ + + H+ D + GG + F+ + +
Sbjct: 98 DLFD-WTPDRQWDAVFFAHWL----AHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE- 151
Query: 240 MTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGL 293
+ P V + R+ + +P + L
Sbjct: 152 ----------RRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTAL 195
Score = 35.3 bits (81), Expect = 0.012
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
LE L VLE+ +G+GY T + +V ++ E++ A +
Sbjct: 37 ALERLRAGNI-RGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNV 92
Query: 117 ET 118
E
Sbjct: 93 EF 94
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 53.8 bits (129), Expect = 7e-09
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
+ + +K GD V++ G+G T ++VG +G+V+ + + + K++
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT 68
Score = 43.0 bits (101), Expect = 3e-05
Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 25/139 (17%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G V+D G+G +A A + +V+ + K + + L +
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTD----LNLIDRVTL 78
Query: 189 VCADGRRGYP------DAAPYDVIYISQAIRDIPWH----------IVDQLKLGGRMLFI 232
+ + A +++ Y+ I ++ L GG + +
Sbjct: 79 IKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138
Query: 233 --KGHEDDIMTLELLDKFV 249
G + E + +F+
Sbjct: 139 IYYGGDTGFEEKEKVLEFL 157
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 53.9 bits (130), Expect = 8e-09
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
LK G VL++GTG+G+ MVG GKVY I+ E++ A ++V
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
Score = 51.6 bits (124), Expect = 5e-08
Identities = 28/150 (18%), Positives = 57/150 (38%), Gaps = 21/150 (14%)
Query: 93 GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM 152
+ I +L + +R + E +K L G VLD+G+G+G+ + M
Sbjct: 4 AHKFDPSKIKKLDDPSRLEL-FDPEKVLKEFG----LKEGMTVLDVGTGAGFYLPYLSKM 58
Query: 153 ---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYI 208
KVYAI+ + + A + + + +N E + ++ + PD D I++
Sbjct: 59 VGEKGKVYAIDVQEEMVNYAWEKVNKLG-----LKNVEVLKSEENKIPLPDNT-VDFIFM 112
Query: 209 SQAIRDIP------WHIVDQLKLGGRMLFI 232
+ ++ + K + I
Sbjct: 113 AFTFHELSEPLKFLEELKRVAKPFAYLAII 142
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 54.1 bits (130), Expect = 1e-08
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 20/126 (15%)
Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRR 175
E +K ++F +L S + DIG G+G + + A ++ +V ++ + R
Sbjct: 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIF----NR 87
Query: 176 GAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------LKL 225
A L + + + D+I+ AI ++I + LK
Sbjct: 88 NARQSGLQNRVTGIVGSMDDLPFRNEE-LDLIWSEGAI----YNIGFERGLNEWRKYLKK 142
Query: 226 GGRMLF 231
GG +
Sbjct: 143 GGYLAV 148
Score = 39.5 bits (92), Expect = 7e-04
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 24 MESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLS--GHLKYGDKVLEIGTGSGYL 81
M + + L++ + N + P + L+ LS +L + +IG G+G
Sbjct: 1 MSNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60
Query: 82 TTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
T + V G+V ++ + ++ + +
Sbjct: 61 TMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQS 92
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 53.7 bits (129), Expect = 1e-08
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+VLD+G G G+L A G + ++ + L A R +
Sbjct: 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAA----RAAGA--GEVHLASYAQL 106
Query: 192 DGRRGYPDAAPYDVIYISQAI--RDIP-----WHIVDQLKLGGRMLFIKGH 235
+ P YD+I + A+ +DI + L GG ++ H
Sbjct: 107 AEAK-VPVGKDYDLICANFALLHQDIIELLSAMRTL--LVPGGALVIQTLH 154
Score = 33.6 bits (77), Expect = 0.043
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 15/58 (25%)
Query: 68 GDKVLEIGTGSGYLTTLF---GAMV-GI--SGKVYTIEHIPELLEAARKRVKAKAETY 119
++VL++G G G+L G G+ L++AAR +
Sbjct: 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGD---------RTLVDAARAAGAGEVHLA 101
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 53.9 bits (129), Expect = 2e-08
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 28/135 (20%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAI---ALAEN 185
G+ VLD+G G+G L + + KV ++ + N + A K + A N
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143
Query: 186 FEFVCAD-------GRRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGR 228
F+ G PD++ D++ + ++ L+ GG
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSS-VDIVISNCVCN----LSTNKLALFKEIHRVLRDGGE 198
Query: 229 MLFIKGHEDDIMTLE 243
+ F + D ++
Sbjct: 199 LYFSDVYADRRLSEA 213
Score = 49.3 bits (117), Expect = 7e-07
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKR 122
G VL++G G+G L +VG GKV ++ + LE ARK V+ AE +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 53.2 bits (127), Expect = 2e-08
Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 7/135 (5%)
Query: 34 TLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 93
L+D ++ + P D ++ + G +VLE G GSG LT VG +G
Sbjct: 68 LLVDYVMSMPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAG 125
Query: 94 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG 153
+V + E + E AR+ V + LV + D G + M
Sbjct: 126 QVISYEQRADHAEHARRNV----SGCYGQPPDNWRLVVS-DLADSELPDGSVDRAVLDML 180
Query: 154 AKVYAIEHVKNLCKR 168
A ++ V L
Sbjct: 181 APWEVLDAVSRLLVA 195
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 53.0 bits (127), Expect = 3e-08
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVK 163
E R+ +AET K ++ G+KVL+ G G G + + A A++ +I+
Sbjct: 12 EREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISP 71
Query: 164 NLCKRAMKNIRRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIP------ 216
++A +N + +N +F+ A+ + D++ +D I++ + +
Sbjct: 72 ESLEKARENTEK-----NGIKNVKFLQANIFSLPFEDSS-FDHIFVCFVLEHLQSPEEAL 125
Query: 217 --WHIVDQLKLGGRMLFI 232
V LK GG + I
Sbjct: 126 KSLKKV--LKPGGTITVI 141
Score = 46.1 bits (109), Expect = 5e-06
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
G KVLE G G G T + A ++ +I+ PE LE AR+ +
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVIL-AKNNPDAEITSIDISPESLEKARENTEKN 84
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 52.1 bits (125), Expect = 3e-08
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
+DIGSG G LS A + A++ K++ + A+KNI L + + V
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA----NLNDRIQIVQ 99
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHEDDIMT 241
D D D+I ++ + + LK GG+ G + +
Sbjct: 100 GDVHNIPIEDNY-ADLIVSRGSVFFWEDVATAFREIYRI--LKSGGKTYIGGGFGNKELR 156
Query: 242 LELLDKFVN 250
+ + +
Sbjct: 157 DSISAEMIR 165
Score = 40.2 bits (94), Expect = 3e-04
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 125
++IG+G G L+ + ++ + E A K RI
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALK--NIADANLNDRIQI 97
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 52.2 bits (125), Expect = 3e-08
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
KR+ + V G+++LD+GS YL MG A E V + A+KN+
Sbjct: 10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE-- 67
Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLK 224
L + A+G + +A D I I + I++
Sbjct: 68 --HGLTSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDI 112
Score = 41.4 bits (97), Expect = 1e-04
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
L+ ++ ++ G ++L++G+ YL +F +G E + ++A K V
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 51.7 bits (124), Expect = 4e-08
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+LD+GSG+G + A +G ++ +E L + A R+ P++ F
Sbjct: 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELA----RQTHPSV------TFHHG 91
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIPWH--------IVDQLKLGGRMLF 231
+ + ++ + + ++ GG +L
Sbjct: 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
Score = 29.4 bits (66), Expect = 1.1
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
D L+ +G +L++G+G+G T ++ ++ +E
Sbjct: 21 GTVISAEDPDRVLIEPWATGV---DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATR 74
Query: 104 LLEAARKRV 112
L+E AR+
Sbjct: 75 LVELARQTH 83
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 52.3 bits (125), Expect = 5e-08
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 26/140 (18%)
Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPA 179
+N + ++D G G GYL + + G+K I+ + L A + R
Sbjct: 14 VNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---- 69
Query: 180 IALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGR 228
L + EF+ D D YD+ + H+ +K GG+
Sbjct: 70 --LPYDSEFLEGDATEIELNDK--YDIAICHAFL----LHMTTPETMLQKMIHSVKKGGK 121
Query: 229 MLFIKGHEDDIMTLELLDKF 248
++ + H M LLD
Sbjct: 122 IICFEPHWISNMASYLLDGE 141
Score = 51.9 bits (124), Expect = 6e-08
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 53 DHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
D+ L + +++ G G GYL + ++ K I+ LL AR+
Sbjct: 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELF 67
Query: 113 KA 114
+
Sbjct: 68 RL 69
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 52.1 bits (125), Expect = 6e-08
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 24/153 (15%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
G +VLD+G G G + A +V I + +A A A LA F
Sbjct: 62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQA----NARATAAGLANRVTFSY 117
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF---IKGHE 236
AD + D A +D ++ +++ H+ D+ L+ GG + +
Sbjct: 118 ADAMDLPFED-ASFDAVWALESLH----HMPDRGRALREMARVLRPGGTVAIADFVLLAP 172
Query: 237 DDIMTLELLDKFVNGSVKTTVIHPHVYIHELKS 269
+ E +D F G ++ Y +++
Sbjct: 173 VEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQ 205
Score = 29.7 bits (67), Expect = 0.92
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 65 LKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 114
++ GD+VL++G G G L T V GI +I + A R A
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGI-----SIS--RPQVNQANARATA 106
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 51.7 bits (124), Expect = 6e-08
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 21/112 (18%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+VLD+ +G G+++ FA KV A + +++ K A I + E+V
Sbjct: 38 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQG 92
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
D + + D + ++ A H + LK GG++L +
Sbjct: 93 DAEQMPFTDER-FHIVTCRIAAH----HFPNPASFVSEAYRVLKKGGQLLLV 139
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
LK ++VL++ TG G++ F V KV + ++L+ AR ++ +++
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG---HQQV 87
Query: 124 NF 125
+
Sbjct: 88 EY 89
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 50.7 bits (122), Expect = 6e-08
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEFVC 190
V+D+G GSG ++ A VYAI+++ + +N+ + N + +
Sbjct: 36 DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIK------NCQIIK 89
Query: 191 ADGRRGYPDAAPYDVIYI--SQAIRDIPWHIVDQLKLGGRM 229
+ +I ++ I I + K +
Sbjct: 90 GRAEDVLDKLEF-NKAFIGGTKNIEKIIEIL--DKKKINHI 127
Score = 31.4 bits (72), Expect = 0.18
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
+ + L +L D V+++G GSG + T+ A VY I+++ +E ++
Sbjct: 26 VSIGKL--NLNKDDVVVDVGCGSGGM-TVEIAKRC--KFVYAIDYLDGAIEVTKQ 75
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 51.1 bits (122), Expect = 6e-08
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 132 GSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+ DIG+GS +S A +++A+E N+++ +A N V
Sbjct: 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK-----FVARNVTLV 95
Query: 190 CADGRRGYPDAAPYDVIYIS---QAIRDIPWHIVDQLKLGGRM 229
A G D D ++I + +I + +LK G +
Sbjct: 96 EAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVI 138
Score = 35.3 bits (81), Expect = 0.014
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
+ L L L+ + +IG GS + ++ + + +G+++ +E P+ L R +K
Sbjct: 31 VTLSKL--RLQDDLVMWDIGAGSASV-SIEASNLMPNGRIFALERNPQYLGFIRDNLKK 86
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 50.9 bits (122), Expect = 8e-08
Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 15/113 (13%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
++LDIG GSG +S A G V I+ + A R EF
Sbjct: 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIP-----------WHIVDQLKLGGRMLFI 232
+ + D++ +D + + +P V LK G + +
Sbjct: 91 NASSLSFHDSS-FDFAVMQAFLTSVPDPKERSRIIKEVFRV--LKPGAYLYLV 140
Score = 33.6 bits (77), Expect = 0.046
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
+ ++ +L+ D++L+IG GSG ++ + V I+ E + A +
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAAR 73
Query: 114 AK--AETYIKRINF 125
+ + + F
Sbjct: 74 SPGLNQKTGGKAEF 87
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 50.5 bits (121), Expect = 1e-07
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+LD+G+G+G LSA Y A ++ + + + A R +++
Sbjct: 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-------KVKYI 97
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPW--------HIVDQLKLGGRMLF 231
AD + Y YD++ + +I + LK G +
Sbjct: 98 EADYSK-YDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFIN 146
Score = 34.4 bits (79), Expect = 0.032
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
V ++ +L++G G+G L+ ++ ++LE A+ R +
Sbjct: 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGN- 91
Query: 117 ETYIKRINF 125
++ +
Sbjct: 92 ----LKVKY 96
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 50.3 bits (120), Expect = 1e-07
Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 41/194 (21%)
Query: 116 AETYIKR-INFYGHLVYGSKVLDIGSGSGYLS-ALFAYMGAKVYAIEHVKNLCKRAMKNI 173
+ + R + + VLD G+G ++F G K Y IE K+A
Sbjct: 7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS 66
Query: 174 RRGAPAIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ---------- 222
R + D R+ + D + +Y I +H+
Sbjct: 67 RENNFKL------NISKGDIRKLPFKDES-MSFVYSYGTI----FHMRKNDVKEAIDEIK 115
Query: 223 --LKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
LK GG D +++ G + E LE +++ H Y
Sbjct: 116 RVLKPGGLACINFLTTKD-------ERYNKGE--------KIGEGEFLQLERGEKVIHSY 160
Query: 281 NTPPPQMDLFDGLT 294
+ F +
Sbjct: 161 VSLEEADKYFKDMK 174
Score = 31.8 bits (72), Expect = 0.16
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
VL+ G G G K Y IE L+ A +
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN 69
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 50.3 bits (120), Expect = 2e-07
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 11/134 (8%)
Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
KR+ + ++ DIGS YL + A E V + A K +R
Sbjct: 10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS-- 67
Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS----QAIRDIPWHIVDQLKLGGRMLFIK 233
L E + +G D I I+ IR I +L +++
Sbjct: 68 --SGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQP 125
Query: 234 GHEDDIMTLELLDK 247
+
Sbjct: 126 NIAAWQLREWSEQN 139
Score = 40.3 bits (94), Expect = 3e-04
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
LE ++ ++ +++ +IG+ YL F + E + ++A+K+V++
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 49.0 bits (117), Expect = 2e-07
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+ DIG GSG ++ + E + +R + N + V
Sbjct: 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-----VSDRIAV 80
Query: 190 CADGRRGYPDAAPY-DVIYI--SQAIRDIPWHIVDQLKLGGRM 229
R + D DVI+I + +L +GGR+
Sbjct: 81 QQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRL 123
Score = 35.1 bits (81), Expect = 0.013
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
K + + +IG GSG + + E E E
Sbjct: 23 PKPHETLWDIGGGSGSIAIEW-LRSTPQTTAVCFEISEERRERILS 67
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 49.9 bits (119), Expect = 2e-07
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 121 KRINFYGHLV-YGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGA 177
KR+ V G+ +LD+GS YL G A E V+ + A+KN+
Sbjct: 4 KRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA-- 61
Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS 209
L E + A+G + + VI I+
Sbjct: 62 --HGLKEKIQVRLANGLAAFEETDQVSVITIA 91
Score = 43.3 bits (102), Expect = 3e-05
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
LEL++ + G +L++G+ YL + G E + ++A K V+A
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 49.5 bits (118), Expect = 2e-07
Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 31/149 (20%)
Query: 102 PELLEAARKRVKA----KAETYIKRIN-------FYGHLVYGSKVLDIGSGSGYLSALFA 150
P++ +A A Y +R F G L G+K+L++G G+GY +
Sbjct: 3 PDMTQAFDDDTLRFYRGNATAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAML 62
Query: 151 YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQ 210
G V A + L A R + YD ++
Sbjct: 63 AAGFDVDATDGSPELAAEA----SRRLGR-------PVRTMLFHQ-LDAIDAYDAVWAHA 110
Query: 211 AIRDIPWH--------IVDQLKLGGRMLF 231
+ +P I LK GG
Sbjct: 111 CLLHVPRDELADVLKLIWRALKPGGLFYA 139
Score = 34.8 bits (80), Expect = 0.021
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPEL 104
A+ E + + L L G K+LE+G G+GY A G V + PEL
Sbjct: 23 AYAERQPRSATLTKFLG-ELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPEL 77
Query: 105 LEAARKRVKAKAET 118
A +R+ T
Sbjct: 78 AAEASRRLGRPVRT 91
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 49.1 bits (117), Expect = 5e-07
Identities = 23/173 (13%), Positives = 55/173 (31%), Gaps = 22/173 (12%)
Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
+++ I +VLD+ G+G + A G +V ++ + + + A + +
Sbjct: 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL 88
Query: 179 AIALAENFEFVCADGRRGYPDAAPYDVIYI---------SQAIRDIPWHIVDQLKLGGRM 229
I EF+ D +D + + + +R + + + LK GG
Sbjct: 89 KI------EFLQGDVLE-IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF 141
Query: 230 LFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNT 282
+ D + + I + + +E + +
Sbjct: 142 IT------DFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRL 188
Score = 29.4 bits (66), Expect = 1.2
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 57 VLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
V E+ + +VL++ G+G T A G +V ++ E+L AR++ K +
Sbjct: 30 VEEIFKEDAKREVRRVLDLACGTGIPTLEL-AERGY--EVVGLDLHEEMLRVARRKAKER 86
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 48.2 bits (115), Expect = 5e-07
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 27/113 (23%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G+K+LD G G G + + G V + L A ++ P +V
Sbjct: 47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYA----KQDFPEA------RWVVG 96
Query: 192 DGRRGYPDAAPYDVIYIS-------------QAIRDIPWHIVDQLKLGGRMLF 231
D +D+I + A+ +I L GR +
Sbjct: 97 DLSVDQISETDFDLIVSAGNVMGFLAEDGREPALA----NIHRALGADGRAVI 145
Score = 34.8 bits (80), Expect = 0.015
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLF---GA-MVGI--SGKVYT 97
+ +D L+ G K+L+ G G G + G ++G
Sbjct: 23 WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLD----- 77
Query: 98 IEHIPELLEAARKRV 112
P L++ A++
Sbjct: 78 ----PILIDYAKQDF 88
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 48.5 bits (115), Expect = 7e-07
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+ L G G G+ A V ++ + + A+ + AE F FV
Sbjct: 67 LGRALVPGCGGGHDVVAMASPERFVVGLD----ISESALAKANETYGSSPKAEYFSFVKE 122
Query: 192 DGRRGYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFI 232
D P +D+I+ I + + LK G ++ +
Sbjct: 123 DVFTWRPT-ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITL 170
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 47.9 bits (114), Expect = 8e-07
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 28/111 (25%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +L++G+G+GY + +E + + RR AP +V A
Sbjct: 37 GESLLEVGAGTGYWLRRLP--YPQKVGVEPSEAMLAVG----RRRAPEA------TWVRA 84
Query: 192 DGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
G +P + +DV+ + + + D L+ GG ++
Sbjct: 85 WGEALPFPGES-FDVVLLFTTLE----FVEDVERVLLEARRVLRPGGALVV 130
Score = 39.4 bits (92), Expect = 6e-04
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 112
L G L G+ +LE+G G+GY + +E +L R+R
Sbjct: 27 ERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRRA 76
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 48.3 bits (115), Expect = 8e-07
Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 29/165 (17%)
Query: 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA 181
+ + +L++GS G ++ + +E + A ++ G I
Sbjct: 33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYI- 91
Query: 182 LAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQ-----------LKLGGRML 230
FE R YD I ++ + HI D L GGR+
Sbjct: 92 -HSRFEDAQLPRR--------YDNIVLTHVL----EHIDDPVALLKRINDDWLAEGGRLF 138
Query: 231 F----IKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271
I + + + H H + L +LE
Sbjct: 139 LVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLE 183
Score = 32.1 bits (73), Expect = 0.16
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
++ + + +LE+G+ G T+ + + +E E + A+ R+K
Sbjct: 32 FMVRAFTPFFR-PGNLLELGSFKGDFTS---RLQEHFNDITCVEASEEAISHAQGRLKDG 87
Query: 116 AETYIKRIN 124
R
Sbjct: 88 ITYIHSRFE 96
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 47.9 bits (114), Expect = 9e-07
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 21/114 (18%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
G +++D+G G G+ GA V ++ + + RA R P +
Sbjct: 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARA----RAAGP----DTGITYER 95
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGH 235
AD + P + +D+ Y S A+ + H L GG +F H
Sbjct: 96 ADLDKLHLPQDS-FDLAYSSLALHYVEDVARLFRTVHQA--LSPGGHFVFSTEH 146
Score = 32.9 bits (75), Expect = 0.10
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 43 GHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102
G + E P+ + +L + G +++++G G G+ V ++
Sbjct: 25 GLDGAAEWPA----LRAML-PEVG-GLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSE 76
Query: 103 ELLEAARKRVKAKAETYI 120
++L AR TY
Sbjct: 77 KMLARARAAGPDTGITYE 94
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 48.2 bits (114), Expect = 1e-06
Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G V + G Y G ++ I++ A R A ALA
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGA----TRLAAGHALAGQITL 174
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQLKLGGRMLF 231
D + YD++ + P LK GG ++
Sbjct: 175 HRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVT 225
Score = 44.7 bits (105), Expect = 2e-05
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Query: 20 HNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSG 79
H P + L + + A + + H L HL+ G V + G
Sbjct: 72 HRLVTHQPGSGALAPLERVFYERL-PAVLATRERHGHFRRALQRHLRPGCVVASVPCGWM 130
Query: 80 YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
++ I++ PE L+ A +
Sbjct: 131 SELLALDYSACPGVQLVGIDYDPEALDGATRLAAG 165
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 47.4 bits (112), Expect = 1e-06
Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 10/179 (5%)
Query: 98 IEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVY 157
++ + + RK + E K + G Y V+D +G G + + A +G +V
Sbjct: 57 VDFVGGAMAHRRKFGGGRGEAVAKAVGIKGD--YLPDVVDATAGLGRDAFVLASVGCRVR 114
Query: 158 AIEHVKNLCKRAMKNIRRGA----PAIALAENFEFVCADGRRGYPDAAP-YDVIYISQAI 212
+E + + RG L E + + A D P V+Y+
Sbjct: 115 MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMF 174
Query: 213 RDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271
L +F D+ LL+ + K V+ Y L ++
Sbjct: 175 PHKQKSA---LVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVKRPDYAPPLANVA 230
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 47.5 bits (113), Expect = 2e-06
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 22/112 (19%)
Query: 132 GSKVLDIGSGSGYLSALFAYM-GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
SKVLDIGSG G GA + I+ N+ A + ++ F
Sbjct: 56 NSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANER-------VSGNNKIIFEA 108
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLF 231
D +P+ +D+IY AI + + ++ LK G +L
Sbjct: 109 NDILTKEFPENN-FDLIYSRDAILAL--SLENKNKLFQKCYKWLKPTGTLLI 157
Score = 32.1 bits (73), Expect = 0.17
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 65 LKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETY 119
L KVL+IG+G G Y+ +GA GI I ++ A +RV +
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGI-----DIC--SNIVNMANERVSGNNKII 105
Query: 120 IKRINF 125
+ +
Sbjct: 106 FEANDI 111
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 47.2 bits (112), Expect = 2e-06
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
D+G G G + L Y + I+ M + + A N F
Sbjct: 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGID-----SDDDM--LEK---AADRLPNTNFG 83
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHEDD 238
AD + A D++Y + + +P ++DQL+ GG +
Sbjct: 84 KADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQ 137
Score = 34.1 bits (78), Expect = 0.043
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
++G G G T L G + I+ ++LE A R
Sbjct: 34 VLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR 76
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 46.7 bits (111), Expect = 2e-06
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+VLDIG SG L A G +V IE ++A + + + +
Sbjct: 33 WKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPY--- 89
Query: 192 DGRRGYPDAAPYDVIYISQAI---RDIPWHIVDQ----LKLGGRMLF 231
+ +D + + D PW ++++ +K G +L
Sbjct: 90 -------EEEQFDCVIFGDVLEHLFD-PWAVIEKVKPYIKQNGVILA 128
Score = 30.9 bits (70), Expect = 0.39
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
LL K +VL+IG SG L A+ +V IE PE E A+++
Sbjct: 24 NLLKHIKKEWKEVLDIGCSSGALGA---AIKENGTRVSGIEAFPEAAEQAKEK 73
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 46.4 bits (110), Expect = 3e-06
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 25/113 (22%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
S L+IG +G + A ++ I+ + I R + +
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKRLTVID-------VMPRAIGRACQRTKRWSHISWAAT 104
Query: 192 DGRRGYPDAAPYDVI-------------YISQAIRDIPWHIVDQLKLGGRMLF 231
D + +D+I + AI ++V L GG ++F
Sbjct: 105 DILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAID----NMVKMLAPGGHLVF 152
Score = 29.8 bits (67), Expect = 0.89
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
LEIG +G T + ++ I+ +P + A +R K +
Sbjct: 52 VSNGLEIGCAAGAFTE---KLAPHCKRLTVIDVMPRAIGRACQRTKRWS 97
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 46.5 bits (110), Expect = 3e-06
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 135 VLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR 194
V+D G G + FA G +V AI+ A N A +A+ EF+C D
Sbjct: 82 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNN----AEVYGIADKIEFICGDFL 137
Query: 195 RGYPDAAPYDVIYISQAIRDIPWH 218
DV+++ PW
Sbjct: 138 L-LASFLKADVVFL-----SPPWG 155
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 45.9 bits (109), Expect = 4e-06
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNI-RRGAPAIALAENF 186
+V K LD+G G+G S A G V A + + +
Sbjct: 29 KVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNL------ 82
Query: 187 EFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQLKLGGRMLFI 232
D YD I + + I + ++ K GG L +
Sbjct: 83 HTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 135
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 45.6 bits (108), Expect = 4e-06
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 12/110 (10%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
+ + K+L + G G + A +G +V A++ + ++ A +
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLASLGYEVTAVD----QSSVGLAKAKQLAQEKGV--KIT 79
Query: 188 FVCADGRRGYPDAAPYDVIYISQAIRDIPWH------IVDQLKLGGRMLF 231
V ++ A ++ I + LK GG +
Sbjct: 80 TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFIL 129
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 45.1 bits (107), Expect = 9e-06
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 33/177 (18%)
Query: 119 YIKRINFY-GHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGA 177
Y + + + + G ++ DIG G+G + L A +V ++ + + + A +
Sbjct: 20 YPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSEEMLEIAQEKAMETN 78
Query: 178 PAIALAENFEFVCADGRRGYPDAAPYDVIYIS--------------QAIRDIPWHIVDQL 223
+ +F D R P D I I Q L
Sbjct: 79 RHV------DFWVQDMRE-LELPEPVDAITILCDSLNYLQTEADVKQTFDSAARL----L 127
Query: 224 KLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYY 280
GG++LF D+ + ++ NG T YI E+ + H
Sbjct: 128 TDGGKLLF------DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLF---GAMVGI--SGKVYTIEHIPELLEAARKRV 112
+ + ++ G ++ +IG G+G T L + G+ S E+LE A+++
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLLADHYEVTGVDLS---------EEMLEIAQEKA 74
Query: 113 KAK 115
Sbjct: 75 MET 77
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 45.3 bits (107), Expect = 9e-06
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
VLD+G G G+ A GAK V I+ + + A + + +P + +
Sbjct: 45 QKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKR--KTTSPVV------CYEQ 96
Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGH 235
+ Y+V+ S A+ I + LK G +F H
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147
Score = 33.7 bits (77), Expect = 0.047
Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 23/158 (14%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYG 127
VL++G G G+ KV I+ +L A+++ + Y +
Sbjct: 45 QKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQ------ 96
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR----GAPAIALA 183
+ DI + + + A+ ++ + K + I
Sbjct: 97 -----KAIEDIAIEPDAYNVVLS-----SLALHYIASF-DDICKKVYINLKSSGSFIFSV 145
Query: 184 ENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVD 221
E+ F + Y D + + +
Sbjct: 146 EHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSH 183
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 45.3 bits (107), Expect = 9e-06
Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 16/123 (13%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
++ D+G+G+G A A+V E + + + A +++ A + E +
Sbjct: 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLEL-PDNAAFSARIEVL 95
Query: 190 CADGRRGYPDAAP-------YDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
AD + + ++ P++ + + +
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIMNP-----PYNDAGDRRTPDALKAEAHAMTE-GLF 149
Query: 243 ELL 245
E
Sbjct: 150 EDW 152
Score = 31.8 bits (72), Expect = 0.19
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI-KRI 123
++ ++G G+G A + + +V E E+ E AR+ ++ RI
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 124 NFY 126
Sbjct: 93 EVL 95
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 45.4 bits (107), Expect = 9e-06
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
+ H ++++G G G T + ++ + +++ A +
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84
Query: 116 AETYIKRINF 125
+TY K ++F
Sbjct: 85 PDTY-KNVSF 93
Score = 43.9 bits (103), Expect = 3e-05
Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 27/138 (19%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA---KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
++D+G G G + A ++ + + K A + +N F
Sbjct: 37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE---VIKEGSPDTYKNVSF 93
Query: 189 VCADG------RRGYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGGRMLFI 232
+ D D+I + H D L+ G +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-----AHWFDFEKFQRSAYANLRKDGTIAIW 148
Query: 233 KGHEDDIMTLELLDKFVN 250
+ D +
Sbjct: 149 GYADPIFPDYPEFDDLMI 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 1e-05
Identities = 40/338 (11%), Positives = 96/338 (28%), Gaps = 98/338 (28%)
Query: 7 PVLTLLDIPH--NIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESP--SDHCLVLELLS 62
+L+ +I H S + TLL + F+E ++ ++ +
Sbjct: 44 SILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPI- 98
Query: 63 GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP--ELLEAARKRV-KAKAETY 119
+ + L+ +V+ ++ + R+ + + +
Sbjct: 99 -KTEQRQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYL--SALFAY-----MGAKVY------------AIE 160
+ L+ G +GSG ++ +Y M K++ +E
Sbjct: 153 V--------LIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 161 HVKNLCKRAMKN-IRRGAPAIALAENFEFVCADGRR-----GYPDAAPYDVIYISQAIRD 214
++ L + N R + + + A+ RR Y + V+ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVL------LN 252
Query: 215 IPWH--IVDQLKLGGRMLFI---KGHEDDIM--------------------TLELLDKFV 249
+ + + L ++L K D + LL K++
Sbjct: 253 V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 250 NGSVKT-----TVIHPHVY--IHELKSLEDQKRMFHYY 280
+ + +P I E + D + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNW 347
Score = 34.1 bits (77), Expect = 0.057
Identities = 36/264 (13%), Positives = 80/264 (30%), Gaps = 91/264 (34%)
Query: 47 FMES---PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG-AMVGISGKVYTIEHIP 102
F S P+ +L L+ + D V+ + + L ++V K TI IP
Sbjct: 381 FPPSAHIPTI---LLSLIWFDVIKSD-VMVV------VNKLHKYSLVEKQPKESTI-SIP 429
Query: 103 ELLEAARKRVKAKAETYIKRIN---------------------FYGHLVYGSKVLDIGSG 141
+ + +++ + + ++ FY H+ +
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---------- 479
Query: 142 SGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGA-----PAIALAENFEFVCADGRR- 195
H +KNI + L +F F+ R
Sbjct: 480 -------------------H--------LKNIEHPERMTLFRMVFL--DFRFLEQKIRHD 510
Query: 196 GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRML-----FIKGHEDDIMTLELLDKFVN 250
A ++ Q ++ +I D R++ F+ E+++ + K+ +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL----ICSKYTD 566
Query: 251 GSVKTTVIHPHVYIHELKSLEDQK 274
++ ++ I E + Q+
Sbjct: 567 -LLRIALMAEDEAIFEEAHKQVQR 589
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 44.8 bits (106), Expect = 1e-05
Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 31/177 (17%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
+L +VLD+G G+G S G +V ++ K + + A + +
Sbjct: 51 YLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----------N 99
Query: 188 FVCADGRR-GYPDAAPYD-VIYISQAIRDIP--------WHIVDQLKLGGRMLFIKGHED 237
V A +P A ++ V+ + + + V L G ++
Sbjct: 100 VVEAKAEDLPFPSGA-FEAVLALGDVLSYVENKDKAFSEIRRV--LVPDGLLIA-----T 151
Query: 238 DIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQMDLFDGLT 294
L + + + + S+ F+ Y P +D +G
Sbjct: 152 VDNFYTFLQQMIEKDAWDQI--TRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFE 206
Score = 40.2 bits (94), Expect = 4e-04
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
+ H L+ L +LK +VL++G G+G + +V ++ E+
Sbjct: 32 YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEM 88
Query: 105 LEAARKR-----VKAKAE 117
LE AR++ V+AKAE
Sbjct: 89 LEVAREKGVKNVVEAKAE 106
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 45.0 bits (106), Expect = 1e-05
Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 23/155 (14%)
Query: 65 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI----EHIPELLEAARKRVKAKAETYI 120
+K G+K+LEIG G G L+ + VG SG V I L + A
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100
Query: 121 KRINFYGHLVYGSKVLDIGSGSGYLSALF--AYMGAKVYAIEHV--KNLCKRAMKNIRRG 176
R+ + + + I F + +++ + N KN+
Sbjct: 101 DRLTVHFNTNLSDDLGPIADQH------FDRVVLA---HSLWYFASANALALLFKNMAAV 151
Query: 177 APAIALAENFEFVCADGRRGYPDAAPYDVIYISQA 211
+ +AE + D + + Q
Sbjct: 152 CDHVDVAEW------SMQPTALDQIGHLQAAMIQG 180
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 44.8 bits (105), Expect = 1e-05
Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 14/159 (8%)
Query: 107 AARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLC 166
A +R K E K +N V D +G G S + A +G V A E +
Sbjct: 63 AQYRRTKGGGELIAKAVNHTA----HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVA 118
Query: 167 ---KRAMKNIRRGAPAIALAENFEFVCADG----RRGYPDAAPYDVIYISQAIRDIPWHI 219
++ A + D++Y+ +
Sbjct: 119 CLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPDIVYLDPMYPERRKSA 178
Query: 220 VDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVI 258
+ K + G D + LL + K V+
Sbjct: 179 AVK-KEMAYFHRLVGEAQD--EVVLLHTARQTAKKRVVV 214
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 44.5 bits (105), Expect = 1e-05
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 24/137 (17%)
Query: 103 ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHV 162
E +R+ VKA+ YI +VLDIG G G L G + ++
Sbjct: 19 EKFRGSRELVKARLRRYIPYFK------GCRRVLDIGCGRGEFLELCKEEGIESIGVDIN 72
Query: 163 KNLCKRAMKNIRRGAPAIALAENFEFVCADGR---RGYPDAAPYDVIYISQAIRDIP-WH 218
+++ K F V +D + PD D + IS + +
Sbjct: 73 EDMIKFC-------------EGKFNVVKSDAIEYLKSLPD-KYLDGVMISHFVEHLDPER 118
Query: 219 IVDQLKLGGRMLFIKGH 235
+ + L L + +
Sbjct: 119 LFELLSLCYSKMKYSSY 135
Score = 31.8 bits (72), Expect = 0.23
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR---VKA 114
L + K +VL+IG G G L GI + ++ ++++ + VK+
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGEFLELC-KEEGI--ESIGVDINEDMIKFCEGKFNVVKS 88
Query: 115 KAETYIK 121
A Y+K
Sbjct: 89 DAIEYLK 95
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 44.0 bits (104), Expect = 2e-05
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 37/165 (22%)
Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
Y+ + L+ + ++IG G+G FA +E + + + A K
Sbjct: 35 YLSELQAVKCLLPEGRGVEIGVGTGR----FAVPLKIKIGVEPSERMAEIARKR------ 84
Query: 179 AIALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQ----------LKLGG 227
+ D + +D + I + D LK GG
Sbjct: 85 ------GVFVLKGTAENLPLKDES-FDFALMVTTIC----FVDDPERALKEAYRILKKGG 133
Query: 228 RMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLED 272
++ + L + + + +V + + + L D
Sbjct: 134 YLIVG-----IVDRESFLGREYEKNKEKSVFYKNARFFSTEELMD 173
Score = 38.3 bits (89), Expect = 0.001
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR----VKAKAE 117
+ +EIG G+G +G +E + E ARKR +K AE
Sbjct: 48 EGRGVEIGVGTGRFAVPLKIKIG-------VEPSERMAEIARKRGVFVLKGTAE 94
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 34/185 (18%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKN 172
A ++ +++IG G + G + E + +A +
Sbjct: 93 AMLARDFLATEL----TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK 148
Query: 173 IRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLG 226
I + +F F A P +VIY + + IP + L
Sbjct: 149 G------IRVRTDF-FEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPD 201
Query: 227 GRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQKRMFHYYNTPPPQ 286
G +F + DI+ D + H ++ S+ + M
Sbjct: 202 GVFVFEDPYLGDIVAKTSFD---------QIFDEHFFLFSATSV---QGMAQRCG----- 244
Query: 287 MDLFD 291
+L D
Sbjct: 245 FELVD 249
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 43.8 bits (104), Expect = 2e-05
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 27 PSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86
P + L L + +++M + ++ + L K +E+G +GY L
Sbjct: 31 PREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL-KLVNAKKTIEVGVFTGYSLLLTA 89
Query: 87 AMVGISGKVYTIEHIPELLEAARK 110
+ GK+ I+ E E
Sbjct: 90 LSIPDDGKITAIDFDREAYEIGLP 113
Score = 32.3 bits (74), Expect = 0.15
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
K +++G +GY S L + K+ AI+ + + + IR+ + F+
Sbjct: 73 KTIEVGVFTGY-SLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA----GVEHKINFI 127
Query: 190 CADG-------RRGYPDAAPYDVIYI 208
+D +G YD ++
Sbjct: 128 ESDAMLALDNLLQGQESEGSYDFGFV 153
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 43.9 bits (103), Expect = 2e-05
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
+K GD++L +G SG + ++G G++Y +E P ++ V+
Sbjct: 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR 123
Score = 39.3 bits (91), Expect = 8e-04
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRG 176
+ + + G ++L +G SG ++ + + ++Y +E + + + +R
Sbjct: 66 LLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD- 124
Query: 177 APAIALAENFEFVCADGRR--GYPDAAPY-DVIYISQAIRDIPWHIVDQ----LKLGGR- 228
N + D R Y D +Y A + +V L+ GG
Sbjct: 125 ------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178
Query: 229 MLFIKGHEDD 238
++ IK D
Sbjct: 179 LMAIKARSID 188
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 26 SPSDYPVLT-LLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL 84
S + P+L L + M++ + +L LL L KV++IGT +GY
Sbjct: 23 SLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLV-KLMQAKKVIDIGTFTGYSAIA 81
Query: 85 FGAMVGISGKVYTIEHIPELLEAARK 110
G + G + T + + A++
Sbjct: 82 MGLALPKDGTLITCDVDEKSTALAKE 107
Score = 30.3 bits (69), Expect = 0.53
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 26/134 (19%)
Query: 96 YTIEHI---PELLEAARKRVKAKAETYIKRI-----NFYGHLVYGS---KVLDIGSGSGY 144
Y ++ P LL R+ TY + LV KV+DIG+ +GY
Sbjct: 18 YLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGY 77
Query: 145 LSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD- 199
SA+ + + + + A + + L++ + + +
Sbjct: 78 -SAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA----GLSDKIGLRLSPAKDTLAEL 132
Query: 200 -----AAPYDVIYI 208
A YD+IYI
Sbjct: 133 IHAGQAWQYDLIYI 146
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 43.1 bits (101), Expect = 3e-05
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 130 VYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
+ G V D+G+G+G LS +GAK V +E K ++N+ F+
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE------FKGKFKV 101
Query: 189 VCADGRRGYPDAAPYDVIYISQ-AIRDIPWHIVDQLKLGGRM 229
D + D++ ++ L +
Sbjct: 102 FIGDVS---EFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEI 140
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 44.4 bits (104), Expect = 3e-05
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
+ TY + I VLD+G GSG LS A GA K+YA+E + + A
Sbjct: 140 YVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEV 198
Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQ 222
++ L + + D+I IS+ + + + H
Sbjct: 199 LVKSN----NLTDRIVVIPGKVEEVSLP-EQVDII-ISEPMGYMLFNERMLESYLHAKKY 252
Query: 223 LKLGGRM------LFIKGHEDDIMTLELLDK 247
LK G M + + D+ + +E K
Sbjct: 253 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTK 283
Score = 30.9 bits (69), Expect = 0.59
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
VL++G GSG L + F A G K+Y +E + + A VK+
Sbjct: 155 TDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVLVKS 202
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 43.8 bits (102), Expect = 3e-05
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 51 PSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
PS L +L G VL++G G+LT G ++ ++ L+ +AR+
Sbjct: 30 PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQ 88
Query: 111 RVKAKAETYIK 121
++ ++
Sbjct: 89 NIRHYLSEELR 99
Score = 41.5 bits (96), Expect = 2e-04
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
G VLD+G G+L+ A + +++ ++ L A +NIR
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP 102
Query: 186 FEFVCADGRRGYPDAA 201
G G
Sbjct: 103 QTLEGDPGAEGEEGTT 118
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 42.5 bits (100), Expect = 4e-05
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 23/136 (16%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
S V+D G+G +A A + KVYA + + + + + EN E +
Sbjct: 23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSD-----LGIENTELILD 77
Query: 192 DGR------RGYPDAAPYDVIYISQAIRDIPWH----------IVDQLKLGGRMLFIK-- 233
R AA +++ Y+ A + + I+D+L++GGR+ +
Sbjct: 78 GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137
Query: 234 GHEDDIMTLELLDKFV 249
GH+ M + + ++V
Sbjct: 138 GHDGGDMEKDAVLEYV 153
Score = 39.1 bits (91), Expect = 5e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118
+ L+ L V++ G+G T + G+S KVY + + L +R+ +
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDTAF---LAGLSKKVYAFDVQEQALGKTSQRLS---DL 67
Query: 119 YIKRINFY 126
I+
Sbjct: 68 GIENTELI 75
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 43.2 bits (102), Expect = 4e-05
Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 32/162 (19%)
Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
+I + + LD+ G+G L+ +A++ + + A R
Sbjct: 26 FIIEK-CVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL 84
Query: 179 AIALAENFEFVCADGRRGYPDAAPYDVIYI--------------SQAIRDIPWHIVDQLK 224
C D +D+I + + + H LK
Sbjct: 85 KP------RLACQDISN-LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNH----LK 133
Query: 225 LGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHE 266
GG +F DI + L + + + Y E
Sbjct: 134 EGGVFIF------DINSYYKLSQVLGNNDFNYDDDEVFYYWE 169
Score = 32.4 bits (74), Expect = 0.11
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
++E + D L++ G+G LT + ++ E+L A + +++
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENL-CPKFK--NTWAVDLSQEMLSEAENKFRSQ 82
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 43.2 bits (102), Expect = 4e-05
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G+++LD+GSGSG + G I+ +A +R A + ++E F+
Sbjct: 37 GTRILDLGSGSGEM-LCTWARDHGITGTGIDMSSLFTAQA----KRRAEELGVSERVHFI 91
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPWHIVD----------QLKLGGRMLF 231
D GY DV A W LK GG ML
Sbjct: 92 HNDA-AGYVANEKCDVAACVGAT----WIAGGFAGAEELLAQSLKPGGIMLI 138
Score = 30.1 bits (68), Expect = 0.82
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSG----YLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
+ +L +K G ++L++G+GSG G I+ A++R
Sbjct: 27 TLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHGI------TGTGIDMSSLFTAQAKRR 78
Query: 112 VKA 114
+
Sbjct: 79 AEE 81
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 42.7 bits (101), Expect = 5e-05
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 27 PSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFG 86
P ++ + L M + +D L +L L +EIG +GY
Sbjct: 40 PREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL-KLINAKNTMEIGVYTGYSLLATA 98
Query: 87 AMVGISGKVYTIEHIPELLEAARK 110
+ GK+ ++ E E
Sbjct: 99 LAIPEDGKILAMDINKENYELGLP 122
Score = 31.6 bits (72), Expect = 0.22
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
++IG +GY S L + K+ A++ K + + I++ + +F
Sbjct: 82 NTMEIGVYTGY-SLLATALAIPEDGKILAMDINKENYELGLPVIKKA----GVDHKIDFR 136
Query: 190 CADGRRGYPD-------AAPYDVIYI 208
+ YD I++
Sbjct: 137 EGPALPVLDEMIKDEKNHGSYDFIFV 162
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 42.6 bits (101), Expect = 5e-05
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
+L LL+ +K V+ G G G + F + IS +V I+ +
Sbjct: 35 RNIPIVDRQTGRLLYLLA-RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDN 93
Query: 105 LEAARK 110
+E AR+
Sbjct: 94 VEHARR 99
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
V+ G G G ++ + ++V I+ ++ + A + + L + E
Sbjct: 59 LVVVPGDGLGC-ASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN----GLIDRVELQ 113
Query: 190 CADGRRGYPDAAPYDVIYI 208
D D++++
Sbjct: 114 VGDPLGIAAGQRDIDILFM 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 6e-05
Identities = 50/263 (19%), Positives = 79/263 (30%), Gaps = 80/263 (30%)
Query: 24 MESPSDYPVLTL--------LDIPHNIGHNA------FMES-------------PSDHCL 56
M++ S P LTL L +P A F + P+
Sbjct: 1 MDAYSTRP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT--- 56
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG-----ISGK-VYTIEHIPELLEAARK 110
EL+ L Y ++E + L + + G ++ + +LL+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL--AAKLLQENDT 114
Query: 111 RVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALF--AYMG-AKVYAI-------- 159
+ E IK N+ + + D S SALF G A++ AI
Sbjct: 115 TLVKTKE-LIK--NYITARIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 160 ----E----------HVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRR-----GYPDA 200
E V +L K + + + + I + E V G P
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 201 APYDVIYISQAIRDIPWHIVDQL 223
P D Y+ P V QL
Sbjct: 225 TP-DKDYLLSIPISCPLIGVIQL 246
Score = 38.9 bits (90), Expect = 0.002
Identities = 52/324 (16%), Positives = 98/324 (30%), Gaps = 102/324 (31%)
Query: 6 YPVLTLLDIPHNIGHNAFMES-PSDYPVLTLLDIPH-NIGHNAFMESPSDHCLVLELLSG 63
+L L+ P N ++ S P P++ ++ + H + +P + + L G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE---LRSYLKG 269
Query: 64 HLKYGDKVL------EIGTGSGY-------LTTLF--GA--------------------- 87
+ ++ E + + +T LF G
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 88 --------MVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIG 139
M+ IS T E + + + + A + I +N +LV V
Sbjct: 330 NNEGVPSPMLSISN--LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV----V---- 379
Query: 140 SGSGYLSALFAYMGA--KVYA--------IEHVKNLCKRAMKNIRRGAPAIA------LA 183
SG +L+ K A I +R +K R P + L
Sbjct: 380 --SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVASPFHSHLLV 433
Query: 184 ENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP-WHIVDQLKLGGRMLFIKGHEDDIMTL 242
+ + D +V + ++ I+ IP + D G L + I +
Sbjct: 434 PASDLINK-------DLVKNNVSFNAKDIQ-IPVYDTFD-----GSDL--RVLSGSI-SE 477
Query: 243 ELLDKFVNGSV---KTTVIHP-HV 262
++D + V TT H+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHI 501
Score = 38.5 bits (89), Expect = 0.002
Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 84/249 (33%)
Query: 2 SHEKYPVLTL------LDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFMESPSDHC 55
+E YP +L + +N G PS P+L++ ++ ++
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEG------VPS--PMLSISNLTQ-----EQVQD----- 351
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLF-GA--MVGISGKVYTIEHIPELLEA----A 108
+ + HL K +EI L GA +V +SG P+ L
Sbjct: 352 -YVNKTNSHLP-AGKQVEIS--------LVNGAKNLV-VSGP-------PQSLYGLNLTL 393
Query: 109 RKRVKAKAETYIKRINFYG-HLVYGSKVLDIGSGSGYLSALF--AYMGAKVYAIEHVKNL 165
RK KA + RI F L + ++ L + ++ F + A + +
Sbjct: 394 RK-AKAPSGLDQSRIPFSERKLKFSNRFLPV-------ASPFHSHLLVP---ASDLINKD 442
Query: 166 CKRAMKNIRRGAPAIALAENFEFVCADGR--RGYPDAAPYDVIYISQAIRDIP--W---- 217
+ + I + + DG R + ++ I +P W
Sbjct: 443 LVKNNVSFNAKDIQIPV-----YDTFDGSDLRVLSGSISERIV---DCIIRLPVKWETTT 494
Query: 218 -----HIVD 221
HI+D
Sbjct: 495 QFKATHILD 503
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 42.4 bits (99), Expect = 7e-05
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 16/110 (14%)
Query: 131 YGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
S+ LD G+G G ++ +E VK++ + A + + A +F+
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKREL-------AGMPVGKFI 145
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIPW--------HIVDQLKLGGRMLF 231
A YD+I I + H L G + F
Sbjct: 146 LASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFF 195
Score = 32.0 bits (72), Expect = 0.19
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 125
+ L+ G G G +T + +E + +LE A++ + + F
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-----MPVGKF 144
Query: 126 Y 126
Sbjct: 145 I 145
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 42.7 bits (100), Expect = 8e-05
Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
+ TY + I VLD+G GSG LS A GA K+YA+E + + A
Sbjct: 32 YVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEA-STMAQHAEV 90
Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPW---------HIVDQ 222
++ L + + D+I IS+ + + + H
Sbjct: 91 LVKSN----NLTDRIVVIPGKVEEVSLP-EQVDII-ISEPMGYMLFNERMLESYLHAKKY 144
Query: 223 LKLGGRM------LFIKGHEDDIMTLELLDK 247
LK G M + + D+ + +E K
Sbjct: 145 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTK 175
Score = 30.4 bits (68), Expect = 0.64
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
VL++G GSG L + F A G K+Y +E + + A VK+
Sbjct: 47 TDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVLVKS 94
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 42.8 bits (100), Expect = 8e-05
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 129 LVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
L G +D+G+ G + VY++++ M A ++ +
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP------M------AQSLMDTGQVTW 256
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDK 247
+ DG + P + + D+ L + L + I L+L K
Sbjct: 257 LREDGFKFRPTRSNISWMVC-----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMK 310
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 42.5 bits (100), Expect = 8e-05
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 132 GSKVLDIGSGSGYLSALFAY-MGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
K++D+ SG+G + L + AK+ +E + L A +++ L + E +
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----QLEDQIEIIE 105
Query: 191 ADGRRGYPDAAP--YDVIYIS 209
D ++ D++ +
Sbjct: 106 YDLKKITDLIPKERADIVTCN 126
Score = 29.8 bits (67), Expect = 1.0
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
K++++ +G+G + L K+ +E L + A++
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKR 90
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 41.9 bits (99), Expect = 8e-05
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
A M+ + L +L+ + +++EIGT +GY + F + + GK+ + E
Sbjct: 38 AQANMQISPEEGQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE 96
Query: 104 LLEAARK 110
ARK
Sbjct: 97 WTNVARK 103
Score = 30.4 bits (69), Expect = 0.58
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 20/93 (21%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRG----------APA 179
++++IG+ +GY S+L K+ + + A K + A
Sbjct: 63 RIIEIGTFTGY-SSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 180 I----ALAENFEFVCADGRRGYPDAAPYDVIYI 208
+ L ++ + + D+ ++
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGP-SSIDLFFL 153
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 42.0 bits (99), Expect = 9e-05
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 44 HNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 103
+ +L L+ L K L++GT +GY + G+V T E +
Sbjct: 47 PQGDSMMTCEQAQLLANLA-RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ 105
Query: 104 LLEAARKRV-KAKAETYIKRI 123
E R +A+AE I
Sbjct: 106 PPELGRPLWRQAEAEHKIDLR 126
Score = 32.3 bits (74), Expect = 0.14
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 18/123 (14%)
Query: 99 EHIPELLEAARKRVKAKAETYIKRINFYGHLVYGS---KVLDIGSGSGYLSALFAYMG-- 153
+ L ++ + + ++ +L K LD+G+ +GY SAL +
Sbjct: 34 PALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGY-SALALALALP 92
Query: 154 --AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGR------RGYPDAAPYDV 205
+V E + R+ + +A +DV
Sbjct: 93 ADGRVVTCEVDAQPPELGRPLWRQA----EAEHKIDLRLKPALETLDELLAAGEAGTFDV 148
Query: 206 IYI 208
+
Sbjct: 149 AVV 151
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 42.3 bits (99), Expect = 9e-05
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK 171
K + E+Y I H+ VLD+G G+G LS A GAK V ++ + L + AM
Sbjct: 46 KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMD 104
Query: 172 NIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWH 218
IR L + + + DVI IS+ +
Sbjct: 105 IIR----LNKLEDTITLIKGKIEEVHLPVEKVDVI-ISEWMGYFLLF 146
Score = 32.7 bits (74), Expect = 0.11
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
H+ VL++G G+G L ++F A G + KV ++ L +A K E I I
Sbjct: 61 HIFKDKVVLDVGCGTGIL-SMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLI 118
Query: 124 N 124
Sbjct: 119 K 119
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 41.9 bits (99), Expect = 1e-04
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 125
+ I +G + + + + I+ E A+ + +A R+ F
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR-EAGYSPSRVRF 113
Score = 27.7 bits (62), Expect = 4.7
Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 12/82 (14%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAEN-FEF 188
+ I +G L+ G + I+ ++A R + + F
Sbjct: 59 GAIAITPAAGL-VGLYILNGLADNTTLTCIDPESEHQRQAKALFREA----GYSPSRVRF 113
Query: 189 VCADGRRGYPD--AAPYDVIYI 208
+ + Y +++
Sbjct: 114 LLSRPLDVMSRLANDSYQLVFG 135
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 41.9 bits (99), Expect = 1e-04
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEH----VKNLCKRAMKNIRR-GAPAIALAENF 186
G KVLD+G+GSG L+ +G K ++ + A N +R G L +
Sbjct: 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQ----AEANAKRNGVRPRFLEGSL 176
Query: 187 EFVCADGRRGYPDAAPYDVIY---ISQAIRDIPWHIVDQLKLGGRML---FIKGHEDDIM 240
E G P+D++ ++ + + L GGR L +K +
Sbjct: 177 EAALPFG--------PFDLLVANLYAELHAALAPRYREALVPGGRALLTGILKDRAPLVR 228
Score = 33.4 bits (77), Expect = 0.071
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYL 81
L L+ L+ HL+ GDKVL++GTGSG L
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL 134
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
A M+ + +++L L KVLE+GT +GY + G+V T +
Sbjct: 40 ANMQVAPEQAQFMQMLI-RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT 98
Query: 106 EAARK 110
+ A
Sbjct: 99 KHAHP 103
Score = 31.1 bits (71), Expect = 0.35
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 15/85 (17%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
KVL++G+ +GY SAL + +V + + K A R +
Sbjct: 63 KVLELGTFTGY-SALAMSLALPDDGQVITCDINEGWTKHAHPYWREA----KQEHKIKLR 117
Query: 190 CADGRRGYPD------AAPYDVIYI 208
+D I+I
Sbjct: 118 LGPALDTLHSLLNEGGEHQFDFIFI 142
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 41.5 bits (97), Expect = 2e-04
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 18/138 (13%)
Query: 111 RVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAM 170
+++ Y + +VLD+ G+G S + G V +++ + K A+
Sbjct: 37 DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYAL 96
Query: 171 KNIRRGAPAIALAENFEFVCADGR---RGYPDAAPYDVI--------YISQAIRDIPWH- 218
K A + + A+ + P +D + ++ + D H
Sbjct: 97 KERWNRRKEPAFDK-WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHR 155
Query: 219 -----IVDQLKLGGRMLF 231
I ++ GG ++
Sbjct: 156 LALKNIASMVRPGGLLVI 173
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 35/121 (28%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE------- 184
G +VLD+G+G G L+ A MGA+V +E ++ ++ +
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAEVVGVE----------DDLA----SVLSLQKGLEANA 279
Query: 185 -NFEFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQ----LKLGGRMLF 231
+ + +D + A +D+I ++ I D+ V+ L+ GG
Sbjct: 280 LKAQALHSDVDEALTEEARFDII-VTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338
Query: 232 I 232
+
Sbjct: 339 V 339
Score = 28.0 bits (62), Expect = 4.3
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
+ E L G +VL++G G G LT + + +V +E + + +K ++A
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTL---PLARMGAEVVGVEDDLASVLSLQKGLEA 277
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 123 INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
+ ++ KVLD+G G G S + +G V + +H +N ++ + L
Sbjct: 112 VVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNEN----SIAFLNETKEKENL 167
Query: 183 AENFEFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQLKLGGRMLFIKG 234
N D YD I + + + I ++ + +GG L +
Sbjct: 168 --NISTALYDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224
Query: 235 HEDD 238
D
Sbjct: 225 MSTD 228
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
+ L+LL ++ +LEIGT GY T + G+V T+E +
Sbjct: 38 PAHDVSPTQGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHA 96
Query: 106 EAARK 110
+ AR
Sbjct: 97 DIARS 101
Score = 30.3 bits (69), Expect = 0.51
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+L+IG+ GY S ++ G +V +E + A NI R L + E
Sbjct: 61 NILEIGTLGGY-STIWLARGLSSGGRVVTLEASEKHADIARSNIERA----NLNDRVEVR 115
Query: 190 CADGRRGYPD-----AAPYDVIYI 208
P+D I+I
Sbjct: 116 TGLALDSLQQIENEKYEPFDFIFI 139
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 40.5 bits (95), Expect = 3e-04
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 104 LLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVK 163
L R + A + I + S +LD+ G+G F +E +
Sbjct: 14 LFYLGRGKDYAAEASDIADL-VRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSE 72
Query: 164 NLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208
++ A K + D R + + +
Sbjct: 73 DMLTHARKR----------LPDATLHQGDMRD-FRLGRKFSAVVS 106
Score = 31.3 bits (71), Expect = 0.28
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
+ +L+ +L++ G+G F +E ++L ARKR+
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHF-TKEFG--DTAGLELSEDMLTHARKRLP 83
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 40.8 bits (95), Expect = 3e-04
Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 10/158 (6%)
Query: 23 FMESPSDYPVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLT 82
Y + H+ H E + G K K+L IG G+G +
Sbjct: 8 LFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEID 67
Query: 83 -----TLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLD 137
+ G+ +E E + ++ V + ++ + F H S+
Sbjct: 68 LQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQS 125
Query: 138 IGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
+ ++ + + +VK++ +K
Sbjct: 126 R-MLEKKELQKWDFIHM-IQMLYYVKDI-PATLKFFHS 160
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 40.1 bits (93), Expect = 3e-04
Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 18/124 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G++VL G + + G V E + +R P I +F+ A
Sbjct: 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE-QPHITSQGDFKVYAA 81
Query: 192 DGRRGY---------PDAAPYDVIYISQAIRDIP--------WHIVDQLKLGGRMLFIKG 234
G + D Y A+ +P H+ + L I
Sbjct: 82 PGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 141
Query: 235 HEDD 238
D
Sbjct: 142 EYDQ 145
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 40.7 bits (95), Expect = 4e-04
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
VL++ +G G L+ F +G +V A+E ++ K R + +
Sbjct: 79 TGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRK--RLAEAPADVRDRCT 136
Query: 188 FVCADGRRGYPDAAPYDVIYI 208
V D + + + I
Sbjct: 137 LVQGDMSA-FALDKRFGTVVI 156
Score = 36.8 bits (85), Expect = 0.006
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
++ E + VLE+ G G LT F +G +V +E +L
Sbjct: 61 DLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPF-LDLGW--EVTALELSTSVL 117
Query: 106 EAARKRVKAKAETYIKRINFY 126
A RKR+ R
Sbjct: 118 AAFRKRLAEAPADVRDRCTLV 138
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 39.9 bits (94), Expect = 4e-04
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 45 NAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 104
N +++ L +LEIGT GY +++ A + V TIE +
Sbjct: 50 NEVPIVDRLTLDLIKQLIRMNNV-KNILEIGTAIGY-SSMQFASISDDIHVTTIERNETM 107
Query: 105 LEAARK 110
++ A++
Sbjct: 108 IQYAKQ 113
Score = 36.1 bits (84), Expect = 0.009
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 134 KVLDIGSGSGYLSAL-FAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
+L+IG+ GY S++ FA + V IE + + + A +N+ +
Sbjct: 74 NILEIGTAIGY-SSMQFASISDDIHVTTIERNETMIQYAKQNLATY----HFENQVRIIE 128
Query: 191 ADGRRGYPD--AAPYDVIYI 208
+ + + YD+I+I
Sbjct: 129 GNALEQFENVNDKVYDMIFI 148
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 39.6 bits (93), Expect = 4e-04
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 15/110 (13%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
+LD+G G G + A + + K A +NI+ + V +
Sbjct: 53 DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLD---NYDIRVVHS 109
Query: 192 DGRRGYPDAAPYDVI-----YISQAIRDIPWHIVDQ----LKLGGRMLFI 232
D D Y+ I + +++ I+++ LK G + +
Sbjct: 110 DLYENVKD-RKYNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVV 156
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 40.2 bits (94), Expect = 4e-04
Identities = 11/81 (13%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFE 187
H + +LD+ G+G A V +E ++ A + +
Sbjct: 47 HSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRR----------NPDAV 96
Query: 188 FVCADGRRGYPDAAPYDVIYI 208
D R + + +
Sbjct: 97 LHHGDMRD-FSLGRRFSAVTC 116
Score = 30.2 bits (68), Expect = 0.62
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 57 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
+ L+ H +L++ G+G V +E ++L AR+R
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS-FG--TVEGLELSADMLAIARRR 91
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 39.9 bits (93), Expect = 5e-04
Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+V+D+G G G L + ++ ++ + A + + R E + +
Sbjct: 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLI 89
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIP 216
YD + + I +
Sbjct: 90 QGALTYQDKRFHGYDAATVIEVIEHLD 116
Score = 36.4 bits (84), Expect = 0.005
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
V+ L +V+++G G G L + ++ ++ LE A++R+
Sbjct: 18 MNGVVAALKQS--NARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQERLD 74
Query: 114 AK--AETYIKRINFY 126
+R+
Sbjct: 75 RLRLPRNQWERLQLI 89
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 40.2 bits (93), Expect = 5e-04
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
+ + + Y + H G VLD+G+GSG L+ A GA KVYA+E + A
Sbjct: 45 RVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEA-TKMADHARA 103
Query: 172 NIRR 175
++
Sbjct: 104 LVKA 107
Score = 30.9 bits (69), Expect = 0.49
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
H G VL++GTGSG L ++ A G KVY +E + + AR VKA
Sbjct: 60 HHFEGKTVLDVGTGSGIL-AIWSAQAGAR-KVYAVEATK-MADHARALVKA 107
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 40.0 bits (94), Expect = 5e-04
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 26 SPSDYPVLT-LLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTL 84
S D L L ++ SP + L LL L +VLEIG GY
Sbjct: 32 SADDSFYLAQLRRETAHLPGAPMQISP-EQAQFLGLLI-SLTGAKQVLEIGVFRGYSALA 89
Query: 85 FGAMVGISGKVYTIEHIPELLEAARK 110
+ G++ + P A+K
Sbjct: 90 MALQLPPDGQIIACDQDPNATAIAKK 115
Score = 29.9 bits (68), Expect = 0.83
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+VL+IG GY SAL + ++ A + N A K ++ +AE
Sbjct: 75 QVLEIGVFRGY-SALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA----GVAEKISLR 129
Query: 190 CADGRRGYPD------AAPYDVIYI 208
+D+I+I
Sbjct: 130 LGPALATLEQLTQGKPLPEFDLIFI 154
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 39.7 bits (92), Expect = 6e-04
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 16/135 (11%)
Query: 119 YIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGA 177
+IK + G VLD+G G G + G Y + ++ + ++ + R A
Sbjct: 52 FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGV----DIAEVSINDARVRA 107
Query: 178 PAIALAENFEFVCADG-RRGYPDAAPYDVIYISQAI----------RDIPWHIVDQLKLG 226
+ F D R +DVI + +I L+ G
Sbjct: 108 RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG 167
Query: 227 GRMLFIKGHEDDIMT 241
G + D I+
Sbjct: 168 GYFIMTVPSRDVILE 182
Score = 33.9 bits (77), Expect = 0.042
Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 60 LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 119
L+ + K GD VL++G G G + GI + Y ++ + AR R +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKY-ERAGIG-EYYGVDIAEVSINDARVRARNMK--- 111
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA 179
+ F+ + +D+G +S+ F++ A E + + +++R G
Sbjct: 112 RRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYA-FSTSESLDIAQRNIARHLRPGGYF 170
Query: 180 IALAENFEFVCADGRR 195
I + + + ++
Sbjct: 171 IMTVPSRDVILERYKQ 186
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 39.7 bits (92), Expect = 7e-04
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 113 KAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGA-KVYAIEHVKNLCKRAMK 171
+ + TY + HL VLD+GSG+G L A GA KV IE ++ A+K
Sbjct: 48 EVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIE-CSSISDYAVK 106
Query: 172 NIRR 175
++
Sbjct: 107 IVKA 110
Score = 30.4 bits (68), Expect = 0.71
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 102
HL VL++G+G+G L +F A G KV IE
Sbjct: 63 HLFKDKVVLDVGSGTGIL-CMFAAKAGAR-KVIGIECSS 99
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 39.2 bits (92), Expect = 8e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 46 AFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 105
+ ++ L LL L ++LEIGT GY T + G++ T+E
Sbjct: 43 PAHDVAANQGQFLALLV-RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHA 101
Query: 106 EAARK 110
+ AR+
Sbjct: 102 QVARE 106
Score = 31.5 bits (72), Expect = 0.23
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 134 KVLDIGSGSGYLSALFAYMG----AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
++L+IG+ GY S ++ ++ +E + + A +N++ + +
Sbjct: 66 RILEIGTLGGY-STIWMARELPADGQLLTLEADAHHAQVARENLQLA----GVDQRVTLR 120
Query: 190 CADGR---RGYPDAAPYDVIYI 208
+ +D+I+I
Sbjct: 121 EGPALQSLESLGECPAFDLIFI 142
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 39.2 bits (91), Expect = 8e-04
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAENF 186
L ++L +G G+ LS G V ++++ +
Sbjct: 39 ELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQL 91
Query: 187 EFVCADGRRGYPDAAPYDVI 206
+ D R+ +A +DV+
Sbjct: 92 RWETMDVRKLDFPSASFDVV 111
Score = 32.3 bits (73), Expect = 0.13
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
LL L+ D++L +G G+ L+ + G V ++++ ++ A +
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDYSSVVVAAMQACYA 86
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 39.7 bits (92), Expect = 8e-04
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 117 ETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR 175
+Y I L VLD+G G+G LS A GAK V ++ ++ + A + +
Sbjct: 24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDM-SSIIEMAKELVEL 82
Score = 30.8 bits (69), Expect = 0.48
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 123
L VL++G G+G L ++F A G V ++ + A I +
Sbjct: 35 DLFKDKIVLDVGCGTGIL-SMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFSDKITLL 92
Query: 124 N 124
Sbjct: 93 R 93
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 38.4 bits (90), Expect = 0.001
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 32 VLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI 91
VL +D + M +++ + VLE+G GY ++
Sbjct: 25 VLEAIDT-YCTQKEWAMNVGDAKGQIMDAVIREYSP-SLVLELGAYCGYSAVRMARLLQP 82
Query: 92 SGKVYTIEHIPELLEAARK 110
++ T+E P+ ++
Sbjct: 83 GARLLTMEINPDCAAITQQ 101
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 38.4 bits (89), Expect = 0.001
Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
KV+D+G G G L +L + ++ ++ ++ +RA ++ +
Sbjct: 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLF 89
Query: 190 CADGRRGYPDAAPYDVIYISQAIRDIP 216
+ + YD + + I +
Sbjct: 90 QSSLVYRDKRFSGYDAATVIEVIEHLD 116
Score = 31.5 bits (71), Expect = 0.23
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 54 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
V+ +L KV+++G G G L +L ++ ++ +LE A+ R+K
Sbjct: 18 LGTVVAVLKSV--NAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLK 74
Query: 114 AK--AETYIKRINFY 126
E KRI+ +
Sbjct: 75 IDRLPEMQRKRISLF 89
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 38.1 bits (88), Expect = 0.002
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
+K G VL +G SG + +VG GK++ IE P EL+ +R
Sbjct: 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER 121
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
G L+IG+G + AL A KV A E + + A +NI R
Sbjct: 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIER----NNSNVRLVKS 111
Query: 190 CADGRRGYPDAAPYDVI-----YISQA 211
+G + +DVI Y +
Sbjct: 112 NGGIIKGVVE-GTFDVIFSAPPYYDKP 137
Score = 31.4 bits (72), Expect = 0.23
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSG 79
+ L+ L+ G+ LEIGTG
Sbjct: 46 YIFLKTF---LRGGEVALEIGTGHT 67
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 37.7 bits (87), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
H+K G KVL +G SG + +VG G VY +E +L+ A+KR
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR 125
Score = 30.0 bits (67), Expect = 0.76
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G+KVL +G+ SG + + + VYA+E + ++ R N
Sbjct: 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEF-------SHRSGRDLINLAKKRTNIIP 130
Query: 189 VCADGRR--GYPDAAP-YDVIYISQAIRDIPWHIVDQ----LKLGGR-MLFIKGHEDD 238
V D R Y DVI+ A D + L+ GG ++ IK + D
Sbjct: 131 VIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCID 188
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 37.3 bits (86), Expect = 0.003
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 21/114 (18%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
++D G+G + + +V ++ K+ + A + A N +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIA----AKENT----AANISYRLL 108
Query: 192 DGR-----RGYPDAAPYDVIYISQAI----RDIPWHIVDQ----LKLGGRMLFI 232
DG IY+ + + L G M I
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLI 162
Score = 35.4 bits (81), Expect = 0.015
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTT----LFGAMVGI--SGKVYTIEHIPELLEAARKR 111
L +++ G+G T F ++G+ S LE A K
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVS---------KSALEIAAKE 97
Query: 112 VKAKAETY 119
A +Y
Sbjct: 98 NTAANISY 105
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 36.9 bits (86), Expect = 0.005
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 70 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
++LEIGT GY + + A + +IE E A K
Sbjct: 57 RILEIGTAIGY-SAIRMAQALPEATIVSIERDERRYEEAHK 96
Score = 35.3 bits (82), Expect = 0.014
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 134 KVLDIGSGSGYLSALFAYMG---AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
++L+IG+ GY SA+ A + +IE + + A K+++ L E +
Sbjct: 57 RILEIGTAIGY-SAIRMAQALPEATIVSIERDERRYEEAHKHVKAL----GLESRIELLF 111
Query: 191 ADGR---RGYPDAAPYDVIYI 208
D +DV++I
Sbjct: 112 GDALQLGEKLELYPLFDVLFI 132
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 36.6 bits (84), Expect = 0.006
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
SK+L +G+ +G + A + VYAIE R M+ + EN +
Sbjct: 75 DSKILYLGASAGTTPSHVADIADKGIVYAIE----YAPRIMRELLDACAER---ENIIPI 127
Query: 190 CADGRR--GYPDAAP-YDVIYISQAIRDIPWHIVDQ----LKLGGR-MLFIKGHEDD 238
D + Y + DVIY A + ++ LK GG M+ IK D
Sbjct: 128 LGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID 184
Score = 33.5 bits (76), Expect = 0.055
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 111
+K K+L +G +G T A + G VY IE+ P ELL+A +R
Sbjct: 71 PIKRDSKILYLGASAGT-TPSHVADIADKGIVYAIEYAPRIMRELLDACAER 121
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 36.8 bits (85), Expect = 0.006
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 132 GSKVLDIGSGSGYLSALFA-YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVC 190
++D G G G + G++V + L R A + + ++
Sbjct: 118 DDTLVDAGCGRGGSMVMAHRRFGSRVEGV----TLSAAQADFGNRRARELRIDDHVRSRV 173
Query: 191 ADGRR-GYPDAAPYDVIYISQAIRDIPWH-----IVDQLKLGGRMLFI 232
+ + A + +++ + H LK+GGR + I
Sbjct: 174 CNMLDTPFDKGA-VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTI 220
Score = 30.6 bits (69), Expect = 0.56
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARK 110
+++ L G D +++ G G G FG+ V G+ T+ + +
Sbjct: 107 FLMDHL-GQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV-----TLS--AAQADFGNR 158
Query: 111 RVKA 114
R +
Sbjct: 159 RARE 162
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 35.9 bits (83), Expect = 0.006
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIA-LAENFEFVC 190
VLD+G+ +G ++ V + + L RA+++ R G A L +
Sbjct: 24 MKIVLDLGTSTGVITE-QLRKRNTVVSTD----LNIRALESHRGGNLVRADLLCSINQES 78
Query: 191 ADGRRGYPDAAPYDVIYISQAI------RDIPWHIVDQLKLGGRMLFIKGHEDDIMTLEL 244
D P PY I R++ VD + +G L + L
Sbjct: 79 VDVVVFNP---PYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEANRPKEVLAR 135
Query: 245 LDK 247
L++
Sbjct: 136 LEE 138
Score = 31.3 bits (71), Expect = 0.21
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
+++ L VL++GT +G +T + V + + LE+ R
Sbjct: 12 TLMDALEREGLEMKIVLDLGTSTGVIT----EQLRKRNTVVSTDLNIRALESHRG 62
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 36.2 bits (83), Expect = 0.007
Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Query: 106 EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSA-LFAYMGAKVYAIEHVKN 164
+ + + + + + + S LD G+G G ++ L + +V ++ ++
Sbjct: 54 HISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITED 113
Query: 165 LCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP 216
+A + + C + P+ YDVI+I I +
Sbjct: 114 FLVQAKTYLGEEGK-----RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLT 160
Score = 27.7 bits (61), Expect = 4.4
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 117
+ L+ G G G +T + +V ++ + L A+ + +
Sbjct: 70 FLREGPNKTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEG- 126
Query: 118 TYIKRINFY 126
+ N++
Sbjct: 127 --KRVRNYF 133
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 35.6 bits (83), Expect = 0.008
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 127 GHLVYGSKVLDIGSGSGYLS--AL--FAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
++ S+ LD +GSG L AL A KV +E K + + KN++
Sbjct: 49 MPYIHQSECLDGFAGSGSLGFEALSRQA---KKVTFLELDKTVANQLKKNLQT---LKCS 102
Query: 183 AENFEFVCADGRR---GYPDAAPYDVIYI 208
+E E + + +DV+++
Sbjct: 103 SEQAEVINQSSLDFLKQPQNQPHFDVVFL 131
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 35.2 bits (82), Expect = 0.013
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 127 GHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALAEN 185
G G LD+ SGSG L+ G IE K +NI E
Sbjct: 40 GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIA----ITKEPEK 95
Query: 186 FEFVCAD----GRRGYPDAAPYDVIYI 208
FE D + Y + +D++ +
Sbjct: 96 FEVRKMDANRALEQFYEEKLQFDLVLL 122
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 34.8 bits (81), Expect = 0.016
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 127 GHLVYGSKVLDIGSGSGYLS--ALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
G G +VLD+ +GSG L+ A+ M + +E + NI
Sbjct: 27 GPYFNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNII----MTKAEN 81
Query: 185 NFEFVCADGRRGYPD-AAPYDVIYI 208
F + + R +D++++
Sbjct: 82 RFTLLKMEAERAIDCLTGRFDLVFL 106
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 34.8 bits (79), Expect = 0.016
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 59 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 118
E L + + +LE G+G +T+ A V ++E + + A
Sbjct: 22 EALRMAYEEAEVILEYGSGG---STVV-AAELPGKHVTSVESDRAWARMMKAWLAANPPA 77
Query: 119 YIKRINFY 126
+N
Sbjct: 78 EGTEVNIV 85
Score = 30.2 bits (67), Expect = 0.62
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 11/133 (8%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
+L+ GSG S + A G V ++E + + + PA
Sbjct: 24 LRMAYEEAEVILEYGSGG---STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGT 80
Query: 183 AENFEF--VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIM 240
N + + G G+P + Y W ++ + G
Sbjct: 81 EVNIVWTDIGPTGDWGHPVSDAKWRSYPDYP--LAVWRTEGFRHPD--VVLVDGRFRVGC 136
Query: 241 TLELLDKFVNGSV 253
L
Sbjct: 137 ALATAFSITRPVT 149
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 34.9 bits (81), Expect = 0.016
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 24/121 (19%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAK-VYAIEH----VKNLCKRAMKNIRR-GAPAIALAEN 185
V D+G+GSG L+ +GAK V A + + A +N G IAL +
Sbjct: 61 PLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA----AEENAALNGIYDIALQKT 116
Query: 186 FEFVCADGRRGYPDAAPYDVIY---ISQAIRDIPWHIVDQLKLGGRML---FIKGHEDDI 239
DG +D+I +++ + D+ + L G+++ I
Sbjct: 117 SLLADVDG--------KFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKI 168
Query: 240 M 240
Sbjct: 169 E 169
Score = 33.7 bits (78), Expect = 0.040
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSGYL 81
L + + + V ++GTGSG L
Sbjct: 49 LAMLGIERAMVKPLTVADVGTGSGIL 74
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 35.3 bits (81), Expect = 0.018
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+++D+G G+G + AKV ++ + N+ + EF+
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE--TNMPEALDRCEFM 280
Query: 190 CADGRRGYPDAAPYDVI------YISQAI-RDIPWHIVDQ----LKLGGRMLFI 232
+ G ++ + + A+ ++ W + LK+ G + +
Sbjct: 281 INNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333
Score = 26.8 bits (59), Expect = 9.5
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 59 ELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 116
HL +++++G G+G + + KV ++ P + ++R V+
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETNM 270
Query: 117 ETYIKRINFY 126
+ R F
Sbjct: 271 PEALDRCEFM 280
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 34.5 bits (80), Expect = 0.020
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 127 GHLVYGSKVLDIGSGSGYLS--AL--FAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
++ ++ LD +GSG L AL +A A IE + + ++ +KN+ L
Sbjct: 50 APVIVDAQCLDCFAGSGALGLEALSRYA---AGATLIEMDRAVSQQLIKNLA------TL 100
Query: 183 -AENFEFVCADGRR-GYPDAAPYDVIYI 208
A N V ++ P++++++
Sbjct: 101 KAGNARVVNSNAMSFLAQKGTPHNIVFV 128
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 34.6 bits (80), Expect = 0.024
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
L+ D VLE+G G+G +T ++ + KV E P L+ KRV+
Sbjct: 25 ALRPTDVVLEVGPGTGNMTV---KLLEKAKKVVACELDPRLVAELHKRVQG 72
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 34.6 bits (80), Expect = 0.024
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 121
+ +K D VLEIG G+G LT ++ ++ KV TI+ ++ +KR + ++
Sbjct: 37 AAKIKSSDIVLEIGCGTGNLTV---KLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLE 93
Query: 122 RIN 124
Sbjct: 94 VYE 96
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 34.8 bits (81), Expect = 0.025
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 31/123 (25%)
Query: 101 IP----ELL-EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLS-ALFAYMGA 154
+P E L E A + ++ V DIG+GSG + ++ + A
Sbjct: 103 VPRPETEELVELALELIRKYGIK---------------TVADIGTGSGAIGVSVAKFSDA 147
Query: 155 KVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPD-AAPYDVI-----YI 208
V+A + + A KN R +++ F + + + A ++I Y+
Sbjct: 148 IVFATDVSSKAVEIARKNAER----HGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 203
Query: 209 SQA 211
+
Sbjct: 204 KSS 206
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 34.2 bits (78), Expect = 0.027
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRR 175
+ G V+D G+G+G L+ +GA+ V A + + + A +N
Sbjct: 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG 96
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 34.3 bits (78), Expect = 0.027
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARK 110
++ L + ++ G KVL +G SG + ++ ++GK Y +E P ELL A++
Sbjct: 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR 123
Query: 111 R 111
R
Sbjct: 124 R 124
Score = 27.7 bits (61), Expect = 3.6
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 132 GSKVLDIGSGSGYLSALFAYM---GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
G+KVL +G+ SG + + + K Y +E R ++ + A N
Sbjct: 77 GTKVLYLGAASGTTISHVSDIIELNGKAYGVE----FSPRVVRELLLVA---QRRPNIFP 129
Query: 189 VCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKF 248
+ AD R +P + V + DI + + F+K + D ++ ++
Sbjct: 130 LLADAR--FPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIK----- 182
Query: 249 VNGSVKTTVIHPHVYIHELKSLEDQK 274
S+ T +Y E++ LE+
Sbjct: 183 -ARSIDVTKDPKEIYKTEVEKLENSN 207
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 34.3 bits (79), Expect = 0.036
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 39/121 (32%)
Query: 134 KVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE------- 184
KVLD+G G+G LS FA ++ + + A+ +
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCD----------VSAP----AVEASRATLAANG 244
Query: 185 -NFEFVCADGRRGYPDAAPYDVIYIS--------QAIRDIPWHIVDQ----LKLGGRMLF 231
E ++ +D+I IS Q D ++ L GG +
Sbjct: 245 VEGEVFASNVFSEVKG--RFDMI-ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301
Query: 232 I 232
+
Sbjct: 302 V 302
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 34.1 bits (78), Expect = 0.043
Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 15/114 (13%)
Query: 132 GSKVLDIGSGSGYLSALFA--YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+ VLDIG G GY + FA + ++ K K A + P + F
Sbjct: 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA----AKRYPQVT------FC 135
Query: 190 CADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTL 242
A R + D + D I A + +K GG ++ +M L
Sbjct: 136 VASSHRLPFSDTS-MDAIIRIYAPCKAE-ELARVVKPGGWVITATPGPRHLMEL 187
Score = 26.8 bits (59), Expect = 10.0
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 57 VLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 114
++ L L VL+IG G GY T F + + ++ ++AA KR
Sbjct: 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQ 131
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 33.7 bits (78), Expect = 0.052
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 64 HLKYGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEH----IPELLEAARKRVK 113
+ G++++EIG G G LT + + ++ +E I L + + ++
Sbjct: 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLE 93
Score = 27.1 bits (61), Expect = 6.0
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 20/105 (19%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSG----YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR 175
I I G ++++IG G G + A A G+ ++A+E ++L R +
Sbjct: 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR--- 87
Query: 176 GAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIV 220
E E DA +D I++ + I+
Sbjct: 88 ------FGELLELHAG-------DALTFDFGSIARPGDEPSLRII 119
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 34.0 bits (78), Expect = 0.052
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAI 180
+R + V+D+ +G G S K+YAI+ + + KNI+
Sbjct: 185 ERARIMKKVSLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLN---- 239
Query: 181 ALAENFEFVCADGR 194
L + +D R
Sbjct: 240 KLEHKIIPILSDVR 253
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 33.8 bits (76), Expect = 0.052
Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 9/158 (5%)
Query: 58 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 117
LE + K VL++G G G + K+ + ++ ++R +
Sbjct: 25 LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKN 82
Query: 118 TYIKR----INFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEH---VKNLCKRAM 170
F ++D + + Y+ E + + A
Sbjct: 83 RRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 142
Query: 171 KNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYI 208
+ + G I N + ++ ++ +
Sbjct: 143 ERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
Score = 30.7 bits (68), Expect = 0.51
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 30/150 (20%)
Query: 119 YIKR--INFYGHLVY-----GSKVLDIGSGSGYLSALFAYMGAKVY-----AIEHVKNLC 166
++K I + V VLD+G G G + A VK
Sbjct: 15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74
Query: 167 KRAMKNIRRGAPAIALAENFEFVCAD------GRRGYPDAAPYDVIYISQAI-------- 212
+R R + EF+ AD + +D+
Sbjct: 75 QRYEDMKNR--RDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYE 132
Query: 213 --RDIPWHIVDQLKLGGRMLFIKGHEDDIM 240
+ + ++L GG + + +++
Sbjct: 133 QADMMLRNACERLSPGGYFIGTTPNSFELI 162
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.8 bits (77), Expect = 0.056
Identities = 37/240 (15%), Positives = 71/240 (29%), Gaps = 37/240 (15%)
Query: 54 HCLVLELLSGHLKYGDKVLEI--------------GTGSGYLTTLFGAMVGISGKVYTIE 99
L+L L Y ++ E+ + + G +E
Sbjct: 35 DVLLLPLRPELEPYKHRIAEVYAEVLGVKTVLRKGHIHGETRKPDYELLYGSDTVTVHVE 94
Query: 100 HIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSALFA-YMGAKVYA 158
+ + K + + A +R+ V+D+ +G G+LS A Y AKV A
Sbjct: 95 NGIKYKLDVAKIMFSPANVK-ERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIA 153
Query: 159 IEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI--YISQAIRDIP 216
IE K ++NI + + D R + ++ Y+ + IP
Sbjct: 154 IEKDPYTFKFLVENIHLN----KVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHEFIP 209
Query: 217 WHIVDQLKLGGRML----FIKGHEDDIMTLELLDKFVNGS-VKTTVIH--------PHVY 263
+ K G ++ + E + ++ P V+
Sbjct: 210 -KALSIAKDGA-IIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYAPGVW 267
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 34.0 bits (77), Expect = 0.064
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 50 SPSDHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 107
P +E H++ +++ G GSG L + ++ P+ L
Sbjct: 702 KPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLAR 761
Query: 108 ARKRVKAK 115
A K + K
Sbjct: 762 AAKMLHVK 769
Score = 30.2 bits (67), Expect = 1.1
Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 7/129 (5%)
Query: 102 PELLEAARKRVKAKAETYIKRINFYGHLV---YGSKVLDIGSGSGYLSALFAYMGA---K 155
E + K +R+ + + S ++D G GSG L
Sbjct: 689 KGPSEERMEAAFFKPPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQT 748
Query: 156 VYAIEHVKNLCKRAMKNIR-RGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRD 214
+ ++ RA K + + ++ D+ + I
Sbjct: 749 IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEH 808
Query: 215 IPWHIVDQL 223
+ +
Sbjct: 809 MEEDQACEF 817
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 32.8 bits (75), Expect = 0.10
Identities = 21/147 (14%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 123 INFYGHLVYGSKVLDIGSGSGY----LSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAP 178
+ +VLD+G+G+G+ L + ++ ++ + K+ + R
Sbjct: 72 LLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRP--ELELVLVDATR---KKV-AFVERAIE 125
Query: 179 AIALAENFEFVCA---DGRRGYPDAAPYDVIYISQAIRDIPW---HIVDQLKLGGRMLFI 232
+ L + + R Y +++A+ + ++ L++GG + +
Sbjct: 126 VLGL-KGARALWGRAEVLAREAGHREAYARA-VARAVAPLCVLSELLLPFLEVGGAAVAM 183
Query: 233 KGH--EDDIMTLELLDKFVNGSVKTTV 257
KG E+++ L + + G + +
Sbjct: 184 KGPRVEEELAPLPPALERLGGRLGEVL 210
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 32.5 bits (75), Expect = 0.12
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 34/123 (27%)
Query: 101 IP----ELL-EAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG--YLSALFAYMG 153
IP E L E A R+ + ++LD+G+G+G L+
Sbjct: 90 IPRPDTECLVEQALARLPEQP----------------CRILDLGTGTGAIALALASERPD 133
Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVI-----YI 208
++ A++ + + A +N + A +N + +D + +I YI
Sbjct: 134 CEIIAVDRMPDAVSLAQRNAQHLA-----IKNIHILQSDWFSALAG-QQFAMIVSNPPYI 187
Query: 209 SQA 211
+
Sbjct: 188 DEQ 190
Score = 27.1 bits (61), Expect = 7.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSG 79
CLV + L+ + ++L++GTG+G
Sbjct: 97 CLVEQALARLPEQPCRILDLGTGTG 121
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 32.6 bits (75), Expect = 0.12
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEFVC 190
+L++ G+G S A +V A E K A NI +N + +
Sbjct: 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH------IDNVQIIR 267
Query: 191 AD 192
Sbjct: 268 MA 269
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 32.1 bits (74), Expect = 0.12
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 36/127 (28%)
Query: 101 IP-----ELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSG--YLSALFAYMG 153
IP L+E A + +K G++V+D+G+GSG +S A G
Sbjct: 9 IPRPDTEVLVEEAIRFLKRMPS--------------GTRVIDVGTGSGCIAVSIALACPG 54
Query: 154 AKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA----PYDVI--- 206
V A++ + A +N A ++ ADG + A P+ I
Sbjct: 55 VSVTAVDLSMDALAVARRN------AERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108
Query: 207 --YISQA 211
YI
Sbjct: 109 PPYIPTG 115
Score = 27.1 bits (61), Expect = 6.3
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 56 LVLELLSGHLKYGDKVLEIGTGSG 79
+ L + G +V+++GTGSG
Sbjct: 20 EAIRFLK-RMPSGTRVIDVGTGSG 42
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 32.4 bits (73), Expect = 0.13
Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 32/191 (16%)
Query: 119 YIKR--INFYGHLVY-----GSKVLDIGSGSGYLSALFAYMGAKVY-----AIEHVKNLC 166
Y+K I+ Y + KVL I G+G + Y + + +
Sbjct: 29 YVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGN 88
Query: 167 KRAMKNIRRGAPAIALAENF-EFVCADG-----RRGYPDAAPYDVIYISQAI-------- 212
+R K + E + +D R + +++I AI
Sbjct: 89 ERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF-GKFNIIDWQFAIHYSFHPRH 147
Query: 213 -RDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLE 271
+ ++ + GG++L D + +L DK + + ++ +
Sbjct: 148 YATVMNNLSELTASGGKVLITTMDGDKLS--KLTDK--KTFIIHKNLPSSENYMSVEKIA 203
Query: 272 DQKRMFHYYNT 282
D + + + +T
Sbjct: 204 DDRIVVYNPST 214
Score = 30.9 bits (69), Expect = 0.44
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 5/121 (4%)
Query: 66 KYGDKVLEIGTGSG-----YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI 120
KVL I G+G Y +V I E +K K +
Sbjct: 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFD 106
Query: 121 KRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAI 180
+ S V ++ + + + + H + + G +
Sbjct: 107 YIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVL 166
Query: 181 A 181
Sbjct: 167 I 167
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 32.5 bits (73), Expect = 0.17
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 132 GSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALA----EN 185
+D+GSG G + A Y +E K A R +
Sbjct: 174 DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 233
Query: 186 FEFVCAD 192
+ D
Sbjct: 234 YTLERGD 240
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 32.2 bits (74), Expect = 0.18
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
S +L D VLEIG G G LT + + KVY IE L A K +
Sbjct: 45 SANLTKDDVVLEIGLGKGILTE---ELAKNAKKVYVIEIDKSLEPYANKLKE 93
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 31.7 bits (71), Expect = 0.19
Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 14/108 (12%)
Query: 126 YGHLVYGSKVLDIGSGSGYLSALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIALA 183
+G++ + S +LD G G L+ +A + + + + + +
Sbjct: 44 FGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYD----IDRAEIAFLSSIIGKLKTT 99
Query: 184 ENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLF 231
+ F + YDV+++ + + ++ Q +
Sbjct: 100 IKYRF--LNKESDVYK-GTYDVVFLLKML-----PVLKQQDVNILDFL 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.26
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 8/29 (27%)
Query: 167 KRAMKNIRR--------GAPAIALAENFE 187
K+A+K ++ APA+A+ E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 31.4 bits (72), Expect = 0.30
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 113
+LK D V EIGTG G+LTT + IS +V +IE L + +++K
Sbjct: 24 QLNLKETDTVYEIGTGKGHLTT---KLAKISKQVTSIELDSHLFNLSSEKLK 72
Score = 28.3 bits (64), Expect = 2.8
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA 179
+ +I +L V +IG+G G+L+ A + +V +IE +L + +
Sbjct: 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEK------- 70
Query: 180 IALAENFEFVCAD 192
+ L + D
Sbjct: 71 LKLNTRVTLIHQD 83
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 31.2 bits (70), Expect = 0.31
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 20/119 (16%)
Query: 108 ARKRVKAKAETYIKRINFYGHLV-YGSKVLDIGSGSGYLSALFA-------YMGAKVYAI 159
+ +RV K F Y VLD+G+G G A +
Sbjct: 3 SMRRVVGKRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADK- 61
Query: 160 EHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIPWH 218
++ + +A +G N ++ A R P + ++ + +PW
Sbjct: 62 SRMEKISAKAAAKPAKGG-----LPNLLYLWATAERLPPLSGVGELHVL------MPWG 109
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 31.3 bits (70), Expect = 0.32
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALA 183
F V G ++DIGSG L A + + + ++ + + ++ A +
Sbjct: 65 FATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWS 124
Query: 184 ENFEFVC 190
+ C
Sbjct: 125 MYSQHAC 131
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 30.9 bits (71), Expect = 0.38
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 62 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
+ L D + EIG+G G+ T +V V IE
Sbjct: 25 NIRLNEHDNIFEIGSGKGHFTL---ELVQRCNFVTAIE 59
Score = 29.0 bits (66), Expect = 1.7
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 120 IKRINFYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPA 179
I +I L + +IGSG G+ + V AIE LCK
Sbjct: 19 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENK------- 71
Query: 180 IALAENFEFVCAD 192
+ +NF+ + D
Sbjct: 72 LVDHDNFQVLNKD 84
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 30.5 bits (70), Expect = 0.40
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 127 GHLVYGSKVLDIGSGSGYLS--ALFAYM--GAKVYAIEHVKNLCKRAMKNIRRGAPAIAL 182
+ LD +GSG + A G + +E K+ A++ ++ L
Sbjct: 37 LRYPRRGRFLDPFAGSGAVGLEAA----SEGWEAVLVE--KD--PEAVRLLKENVRRTGL 88
Query: 183 AENFEFVCAD--GRRGYPDAAPYDVIYI 208
+ + + V ++
Sbjct: 89 GARVVALPVEVFLPEAKAQGERFTVAFM 116
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 30.6 bits (70), Expect = 0.47
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 111
+ + G ++EIG G LT + ++ IE +L +
Sbjct: 18 NPQKGQAMVEIGPGLAALT---EPVGERLDQLTVIELDRDLAARLQTH 62
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 29.9 bits (68), Expect = 0.75
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 26/119 (21%)
Query: 132 GSKVLDIGSGSGY----LSALFAYMGAKVYAIEHVKNLCKRA--MKNIRRGAPAIALAEN 185
G + +D+G+G G LS + A ++ + KR ++ ++ + L EN
Sbjct: 66 GERFIDVGTGPGLPGIPLSIVRP--EAHFTLLDSLG---KRVRFLRQVQH---ELKL-EN 116
Query: 186 FEFVCADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIKGHEDD 238
E V + +P P+D + IS+A + H+ GR +KG +
Sbjct: 117 IEPVQSRVEE-FPSEPPFDGV-ISRAFASLNDMVSWCHHL---PGEQGRFYALKGQMPE 170
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 30.2 bits (69), Expect = 0.90
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEFVCAD 192
+VLD+ G G + A A V +E V L ++ +N R G +N F +
Sbjct: 289 RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG------LQNVTFYHEN 342
Query: 193 GRRGYPDAA----PYDVI 206
+D +
Sbjct: 343 LEEDVTKQPWAKNGFDKV 360
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 29.6 bits (67), Expect = 0.90
Identities = 20/162 (12%), Positives = 58/162 (35%), Gaps = 42/162 (25%)
Query: 132 GSKVLDIGSGSGY----LSALFAY--------MGAKVYAIEHVKNLCKRAMKNIRRGAPA 179
+ + D+G+G+G+ + F + + ++ +E + + ++N
Sbjct: 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--LENTT---FC 125
Query: 180 IALAENFEFVCADGRRGYPDAAPYDVIYISQAIRDIP------WHIVDQLKLGGRMLFIK 233
AE F + YD++ ++A+ + + +K G + +K
Sbjct: 126 HDRAETFG-------QRKDVRESYDIV-TARAVARLSVLSELCLPL---VKKNGLFVALK 174
Query: 234 GH--EDDIMTLELLDKFVNGSVKTTVIHPHVYIHELKSLEDQ 273
E+++ + + G ++ +++ +L E
Sbjct: 175 AASAEEELNAGKKAITTLGGELE------NIHSFKLPIEESD 210
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold,
rossmann-fold, structural genomics, PSI-2, structure
initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Length = 261
Score = 29.9 bits (66), Expect = 0.99
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAE 184
F ++V GS V IG+ + +L GA V + + +C + + I L +
Sbjct: 39 FLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLD 98
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 29.7 bits (66), Expect = 1.0
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 134 KVLDIGSGSG--YLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFV 189
+ +DIG+G+ Y G A E A KN+ + L++ + V
Sbjct: 68 RGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ----NNLSDLIKVV 121
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 29.8 bits (67), Expect = 1.1
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 8/133 (6%)
Query: 18 IGHNAFMESPSDY--PVLTLLDIPHNIGHNAFMESPSDHCLVLELLSGHLKYGDKVLEIG 75
I NA + +D +G+ L+ L + L+ G+ +
Sbjct: 247 IIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYL--SLISLLENRDLQAGETIGLFS 304
Query: 76 TGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYGHLVYG--S 133
GSG + + A + R + + Y + + +
Sbjct: 305 YGSGSVGEFYSATL--VEGYKDHLDQAAHKALLNNRTEVSVDAYETFFKRFDDVEFDEEQ 362
Query: 134 KVLDIGSGSGYLS 146
+ YLS
Sbjct: 363 DAVHEDRHIFYLS 375
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 132 GSKVLDIGSGSGYLSALFA----YMGAKVYAIEHVKNLCKRAMKNIRR 175
K++D G+ G A +V+ IE + + +RR
Sbjct: 227 SEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 28.7 bits (65), Expect = 1.7
Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 16/86 (18%)
Query: 130 VYGSKVLDIGSGSGYLS--AL--FAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIAL-AE 184
+ G VLD+ +GSG L AL A A V +E + +NI AL
Sbjct: 43 LTGLAVLDLYAGSGALGLEALSRGA---ASVLFVESDQRSAAVIARNIE------ALGLS 93
Query: 185 NFEFVCADGRRGYPDAA--PYDVIYI 208
P D++
Sbjct: 94 GATLRRGAVAAVVAAGTTSPVDLVLA 119
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 28.6 bits (63), Expect = 2.0
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 66 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 117
++ +++GTG G A+ + I+ + E L K++ K
Sbjct: 23 QFDRVHIDLGTGDGRNIYKL-AINDQNTFYIGIDPVKENLFDISKKIIKKPS 73
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein
synthesis; 1.98A {Coxiella burnetii}
Length = 255
Score = 28.6 bits (65), Expect = 2.1
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 99
H + D ++EIG G G LT ++ + +E
Sbjct: 26 HPQKTDTLVEIGPGRGALTD---YLLTECDNLALVE 58
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.9 bits (65), Expect = 2.2
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 24/113 (21%)
Query: 133 SKVLDIGSGSGYLSALFA----YMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEF 188
V+D+ G G A + +++ + A K I L EF
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT---RDAARKTIHAH----DLGGRVEF 233
Query: 189 VCADGRRGYPDAAP-YDVIYISQAIRDIPW----------HIVDQLKLGGRML 230
+ DV+ ++ + + H +K GG +L
Sbjct: 234 FEKNLLDARNFEGGAADVVMLNDCLHY--FDAREAREVIGHAAGLVKPGGALL 284
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 9 LTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHN----IGHNAFMESPS 52
+ L I + + F P L LDI I F +
Sbjct: 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251
Score = 28.6 bits (64), Expect = 2.5
Identities = 5/48 (10%), Positives = 8/48 (16%), Gaps = 7/48 (14%)
Query: 8 VLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHN---IGHNAFMESPS 52
+ H AF+E L +
Sbjct: 157 SSDAYRFKNRWEHFAFIEGEP----LETTIQVGAMGKLEDEIMKAGLQ 200
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 28.3 bits (62), Expect = 2.7
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 128 HLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMK-NIRRGAPAIALAEN 185
L+ G V ++G+G+G +S + GA V A ++ +++ NIR +E
Sbjct: 76 ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET 135
Query: 186 FE 187
+
Sbjct: 136 VK 137
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 28.1 bits (62), Expect = 3.4
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 125 FYGHLVYGSKVLDIGSGSGYLSALFAYMGAK-VYAIEHVKNLCKRAMKNIRRGAPAIALA 183
F V G ++DIGSG L A + ++ K +++ A +
Sbjct: 50 FCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWS 109
Query: 184 ENFEFVC 190
+VC
Sbjct: 110 PVVTYVC 116
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project
on protein structural and functional analyses; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 112
Score = 27.2 bits (60), Expect = 3.5
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 26/100 (26%)
Query: 191 ADGRRGYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRMLFIKGHEDDIMTLELLDKFVN 250
++ VI++ ++P + + L+L + +
Sbjct: 13 KPDQKFDQKQELGRVIHL----SNLPHSGYS--------------DSAV--LKLAEPY-- 50
Query: 251 GSVKTTVIHPH---VYIHELKSLEDQKRMFHYYNTPPPQM 287
G +K ++ +I E+++ ED M +
Sbjct: 51 GKIKNYILMRMKSQAFI-EMETREDAMAMVDHCLKKALWF 89
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 27.9 bits (61), Expect = 3.6
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 7 PVLTLLDIPHNIGHNAFMESPSDYPVLTLLDIPHNIGHNAFM---ESPSDHCLVLELLSG 63
P T + P A+ +P+ Y D I M E+P H L S
Sbjct: 4 PSATPIFAPGENCSPAWGAAPAAY---DAADTHLRILGKPVMERWETPYMHALAAAASSK 60
Query: 64 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
G +VLE+G G + + + IE + + R
Sbjct: 61 ----GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRD 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project
on protein structural and functional analyses; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 102
Score = 26.8 bits (59), Expect = 3.7
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 227 GRMLFIKGHEDDIMTLELLDKFVN--GSVKTTVIHPH---VYIHELKSLEDQKRMFHYYN 281
R++ I + L + V G + +I +I E+ + ED + YY
Sbjct: 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFI-EMATTEDAQAAVDYYT 73
Query: 282 TPPPQM 287
T P +
Sbjct: 74 TTPALV 79
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 27.9 bits (61), Expect = 4.3
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 55 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 110
L LE L L KV + + SG F K Y + + +E ++
Sbjct: 40 VLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE 95
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 28.0 bits (62), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGA--KVYAIEHVKNLCK 167
KVLD+ G G SA+F + +E +L K
Sbjct: 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 96
Score = 26.8 bits (59), Expect = 9.9
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 68 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 115
KVL++ G G + +F + +E L + + +
Sbjct: 59 ELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGS 105
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 27.7 bits (61), Expect = 4.6
Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 20/157 (12%)
Query: 122 RINFYGHLVYGSKVLDIGSGSGYLSALFAYMG--AKVYAIEHVKNLCKRAMKNIRRGAPA 179
R V+D+ +G GY + A VYAIE +NI+
Sbjct: 110 RKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL---- 165
Query: 180 IALAENFEFVCADGRR-GYPDAAPYDVIYISQAIRDIPWHIVDQLKLGGRM---LFIKGH 235
N + AD R D A ++ + LK G + +
Sbjct: 166 -NKLNNVIPILADNRDVELKDVADRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVAEK 224
Query: 236 EDDIMTLELLDKFVNGS-VKTTVIH--------PHVY 263
+E L + + K P V+
Sbjct: 225 IMYERPIERLKFYAEKNGYKLIDYEVRKIKKYAPGVW 261
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 27.4 bits (62), Expect = 4.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 62 SGHLKYGDKVLEIGTGSGYLT 82
+++ G+ V+E+G G+G LT
Sbjct: 26 ELNIEEGNTVVEVGGGTGNLT 46
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter,
transferrin R serum, metal transport; HET: P6G; 2.10A
{Homo sapiens} PDB: 3v8x_B* 3qyt_A* 3ve1_B 2hav_A*
3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Length = 698
Score = 28.0 bits (61), Expect = 5.1
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 142 SGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCADGRRGYPDAA 201
GY A + A + + + +++E +C DG R +
Sbjct: 534 YGYTGAFRCLVEKGDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLCLDGTRKPVEE- 592
Query: 202 PYDVIYISQAIRDIPWHIV 220
Y ++++A P H V
Sbjct: 593 -YANCHLARA----PNHAV 606
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 27.3 bits (61), Expect = 6.3
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 132 GSKVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRRGAPAIALAENFEFVCA 191
G +VLD+ S G + A GA A++ + A+ L +
Sbjct: 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA------ALRLGLRVDIRHG 268
Query: 192 D 192
+
Sbjct: 269 E 269
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 26.9 bits (60), Expect = 7.6
Identities = 4/51 (7%), Positives = 14/51 (27%)
Query: 98 IEHIPELLEAARKRVKAKAETYIKRINFYGHLVYGSKVLDIGSGSGYLSAL 148
+ L R + + ++ ++ L + +L +
Sbjct: 169 YTQYTQFLYECRVLIHRLNVSKSRKHELLTEIIDDQYRLSLVKQREFLQQI 219
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 27.1 bits (61), Expect = 7.8
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 135 VLDIGSGSGYLSA--LFAYMGAKVYAI 159
++D + G LS + +G K+Y I
Sbjct: 176 LIDPANSVGALSTPLVARALGCKIYTI 202
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 26.7 bits (60), Expect = 9.7
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 134 KVLDIGSGSGYLSALFAYMGAKVYAIEHVKNLCKRAMKNIRR-GAPAIALAENFEFVCAD 192
K+LD+ SG G A G V + + + A +N+ + V +D
Sbjct: 293 KILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN------VDAEFEVASD 346
Query: 193 GRRGYPDAAPYDVI 206
+D +
Sbjct: 347 REVSVKG---FDTV 357
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 26.8 bits (60), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 135 VLDIGSGSGYLSA--LFAYMGAKVYAI 159
V+D +G+G L+ L +G KV +
Sbjct: 178 VVDTSNGAGSLTLPYLLRELGCKVITV 204
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 26.8 bits (60), Expect = 10.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 64 HLKYGDKVLEIGTGSGYL 81
LK G +L+IG G G
Sbjct: 87 DLKPGMTLLDIGCGWGTT 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.427
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,977,955
Number of extensions: 318128
Number of successful extensions: 1489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 358
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)