BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy784
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 248 bits (634), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/126 (95%), Positives = 123/126 (97%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 121 EEERVV 126
E+ERVV
Sbjct: 121 EDERVV 126
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 245 bits (626), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/126 (94%), Positives = 122/126 (96%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGS GVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQCMLEILDTAG
Sbjct: 3 MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 62
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM+LVGNKCDL
Sbjct: 63 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 122
Query: 121 EEERVV 126
E+ERVV
Sbjct: 123 EDERVV 128
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 245 bits (625), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/126 (94%), Positives = 123/126 (97%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 EEERVV 126
E+ERVV
Sbjct: 121 EDERVV 126
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 242 bits (617), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/126 (92%), Positives = 123/126 (97%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFVQGIFV++YDPTIEDSYRKQVEVD QQCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 EEERVV 126
E+ERVV
Sbjct: 121 EDERVV 126
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 174 bits (442), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/120 (65%), Positives = 100/120 (83%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 100/123 (81%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG E
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNKCDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 123 ERV 125
V
Sbjct: 124 RTV 126
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 169 bits (427), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 EEERV 125
V
Sbjct: 122 PSRTV 126
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 102/120 (85%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD +LEILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQF +MRDLY+KNGQGFILVYS+ Q +F D+ +R+QI+RVK + VP++LVGNK DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FVEKYDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV+KYDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 VEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 KEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 159 bits (403), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 IEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 6 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 66 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 EEERVVS 127
V S
Sbjct: 126 AARTVES 132
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 159 bits (401), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 6 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 66 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 EEERVVS 127
V S
Sbjct: 126 AARTVES 132
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 6 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 66 LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 EEERVVS 127
V S
Sbjct: 126 AARTVES 132
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 8 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 67
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 68 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
Query: 121 EEERVVS 127
V S
Sbjct: 128 AARTVES 134
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 158 bits (400), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 158 bits (400), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGN+CDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 158 bits (399), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGK+ALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 158 bits (399), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDP+IEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIE+SYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV+++DPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDP+IEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 7 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 66
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 67 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
Query: 121 EEERVVS 127
V S
Sbjct: 127 AARTVES 133
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 102/125 (81%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNKCDL
Sbjct: 79 HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
Query: 121 EEERV 125
V
Sbjct: 139 PSRTV 143
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+ +AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDT G
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 102/120 (85%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D++ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDT G
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 154 bits (389), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 102/127 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ +L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/125 (61%), Positives = 100/125 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 2 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 EEERV 125
V
Sbjct: 122 PSRTV 126
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 101/125 (80%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 2 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 EEERV 125
V
Sbjct: 122 PSRTV 126
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 152 bits (383), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 101/127 (79%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++ DPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 EEERVVS 127
V S
Sbjct: 121 AARTVES 127
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 98/124 (79%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DLE++
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 124 RVVS 127
R VS
Sbjct: 139 RQVS 142
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 150 bits (378), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 98/124 (79%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DLE++
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 124 RVVS 127
R VS
Sbjct: 127 RQVS 130
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 98/124 (79%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DLE++
Sbjct: 67 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 124 RVVS 127
R VS
Sbjct: 127 RQVS 130
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 98/124 (79%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DLE++
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 124 RVVS 127
R VS
Sbjct: 125 RQVS 128
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 149 bits (377), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 98/124 (79%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DLE++
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 124 RVVS 127
R VS
Sbjct: 135 RQVS 138
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 8 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLEE 122
+ A+RD Y ++G+GF+LV+SIT +F ++ REQILRVK + D +P+++VGNK DLEE
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 123 ERVV 126
R V
Sbjct: 128 RRQV 131
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 147 bits (370), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 97/124 (78%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG E
Sbjct: 4 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLEE 122
+ A+RD Y ++G+GF+LV+SIT +F ++ REQILRVK + D +P+++VGNK DLEE
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 123 ERVV 126
R V
Sbjct: 124 RRQV 127
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 95/124 (76%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+VV+G GGVGKSALT+QF Q IFV++YDPTIEDSYRK E+D Q +L++LDTAG E+
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEE 78
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK DL
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
Query: 124 RVVS 127
R V+
Sbjct: 139 RKVT 142
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 93/124 (75%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
+K+VV+G GGVGKSALT+QF+Q FV YDPTIEDSY K VDG L+ILDTAG E+
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F AMR+ YM+ G GF+LV++I + +FN++ L QILRVKD DD P+VLVGNK DLE +
Sbjct: 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129
Query: 124 RVVS 127
R V
Sbjct: 130 RQVP 133
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 97/125 (77%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
+Y++VV+G GGVGKSALT+QF+Q FV YDPTIEDSY KQ +D + L+ILDTAG E
Sbjct: 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQE 64
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F AMR+ YM+ G+GF+LV+S+T + +F ++ + QILRVKD D+ PM+L+GNK DL+
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124
Query: 123 ERVVS 127
+R V+
Sbjct: 125 QRQVT 129
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+VV+G GGVGKSALT+QF Q IFV +YDPTIEDSY K E+D Q +L++LDTAG E+
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK DL
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
Query: 124 RVVS 127
R V+
Sbjct: 139 RKVT 142
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+VV+G GGVGKSALT+QF Q IFV+ YDPTIEDSY K E+D Q +L++LDTAG E+
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK DL
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138
Query: 124 RVVS 127
R V+
Sbjct: 139 RKVT 142
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+VV+G GGVGKSALT+QF Q IFV YDPTIEDSY K E+D Q +L++LDTAG E+
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 73
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK DL
Sbjct: 74 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 133
Query: 124 RVVS 127
R V+
Sbjct: 134 RKVT 137
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
+Y++ V G+GGVGKS+L ++FV+G F E Y PT+ED+YR+ + D C L+I DT G+
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLE 121
QF AM+ L + G FILVYSIT++ + +L + EQI +K D + +P++LVGNKCD
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 122 EERVV 126
R V
Sbjct: 123 PSREV 127
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E K+ + G GVGKSAL V+F+ F+ +YDPT+E +YR Q +D + +EILDTAG E
Sbjct: 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQE 87
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
T R+ +M+ G+GF+LVY IT + +F ++ L+ + +K +V ++LVGNK DL+
Sbjct: 88 D-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 146
Query: 123 ERVVS 127
R VS
Sbjct: 147 SRQVS 151
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 85/123 (69%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KI +LG VGKS+LT+QFV+G FV+ YDPTIE+++ K + V+GQ+ L+++DTAG +++
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK DL ER
Sbjct: 63 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 122
Query: 125 VVS 127
V+S
Sbjct: 123 VIS 125
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 85/123 (69%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KI +LG VGKS+LT+QFV+G FV+ YDPTIE+++ K + V+GQ+ L+++DTAG +++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK DL ER
Sbjct: 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127
Query: 125 VVS 127
V+S
Sbjct: 128 VIS 130
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 86/126 (68%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ KI +LG VGKS+LT+QFV+G FV+ YDPTIE+++ K + V+GQ+ L+++DTAG
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++++ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 122 EERVVS 127
ERV+S
Sbjct: 125 MERVIS 130
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 84/123 (68%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KI +LG VGKS+LT+QFV+G FV+ DPTIE+++ K + V+GQ+ L+++DTAG +++
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK DL ER
Sbjct: 66 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER 125
Query: 125 VVS 127
V+S
Sbjct: 126 VIS 128
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 102 bits (255), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 16 KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNG 75
KS+L ++FV+G F + Y PTIED+YR+ + D C L+I DT G+ QF AM+ L + G
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 76 QGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD 119
FILV+S+T++ + +L + + I+++K + +D+P++LVGNKCD
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 79/126 (62%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+R K+V+LG VGK++L QFV+G F E YDPT+E++Y K V + + L ++DTAG
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
++++ + ++ G++LVYS+T+ +F + L +++ VP+VLVGNK DL
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 121 EEERVV 126
ER V
Sbjct: 142 SPEREV 147
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 125
Query: 123 ERVV 126
++VV
Sbjct: 126 KKVV 129
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 125
Query: 123 ERVV 126
++VV
Sbjct: 126 KKVV 129
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 152
Query: 123 ERVV 126
++VV
Sbjct: 153 KKVV 156
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 ERVV 126
++VV
Sbjct: 136 KKVV 139
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 144
Query: 123 ERVV 126
++VV
Sbjct: 145 KKVV 148
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E+
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTK 119
Query: 124 RVV 126
+VV
Sbjct: 120 KVV 122
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ GVGKS L ++F + Y TI ++ K VE+DG+ L+I DTAG E
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN + ++I R T V +LVGNKCDL++
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 140
Query: 123 ERVV 126
+RVV
Sbjct: 141 KRVV 144
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ GVGKS L ++F + Y TI ++ K VE+DG+ L+I DTAG E
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN + ++I R T V +LVGNKCDL++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 123 ERVV 126
+RVV
Sbjct: 128 KRVV 131
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ GVGKS L ++F + Y TI ++ K VE+DG+ L+I DTAG E
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN + ++I R T V +LVGNKCDL++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 123 ERVV 126
+RVV
Sbjct: 128 KRVV 131
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGK+ L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 ERVV 126
++VV
Sbjct: 136 KKVV 139
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAG 60
R +KI+V+G VGK+ LT +F G F ++ + TI +R + V++DG++ +++ DTAG
Sbjct: 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 78
Query: 61 TEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
E+F +M Y +N + VY +T ++F+ L E+ + +D+P +LVGNKCD
Sbjct: 79 QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 138
Query: 120 LE 121
L
Sbjct: 139 LR 140
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K+V+LG G VGK++L +++ + F +K+ T++ S+ K++ + G++ L I DTAG E
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ + +VGNK DLE+
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEK 139
Query: 123 ERVVS 127
ER VS
Sbjct: 140 ERHVS 144
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K+V+LG G VGK++L +++ + F +K+ T++ S+ K++ + G++ L I DTAG E
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ + +VGNK DLE+
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEK 125
Query: 123 ERVVS 127
ER VS
Sbjct: 126 ERHVS 130
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAG 60
R +KI+V+G VGK+ LT +F G F ++ + TI +R + V++DG++ +++ DTAG
Sbjct: 28 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 87
Query: 61 TEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
E+F +M Y +N + VY T ++F+ L E+ + +D+P +LVGNKCD
Sbjct: 88 QERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCD 147
Query: 120 LE 121
L
Sbjct: 148 LR 149
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q +FN++ ++I R +++V +LVG KCDL
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGIKCDLTT 127
Query: 123 ERVV 126
++VV
Sbjct: 128 KKVV 131
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+KI+++G+ VGK++ ++ F + T+ ++ K + + ++ L+I DTAG E
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ + Y + GFIL+Y IT + +FN + D QI + D+ ++LVGNKCD+E+
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDMED 124
Query: 123 ERVVSG 128
ERVVS
Sbjct: 125 ERVVSS 130
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K+V+LG G VGK++L +++ + F +K+ T+ S+ K++ + G++ L I DTAG E
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ + +VGNK DLE+
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEK 125
Query: 123 ERVVS 127
ER VS
Sbjct: 126 ERHVS 130
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQ 63
K+VV+G+G VGKS++ ++ +GIF + Y TI D +Q++V+ + L + DTAG E+
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
F A+ Y + Q +LV+S T + +F +S RE++ V + D+P LV NK DL
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDL 121
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+KIV++G+ GVGK+ L +F QG+F TI D K VE++G++ L+I DTAG E
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F ++ Y ++ IL Y IT + +F L + +I + ++ V VLVGNK DL E
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAE 145
Query: 123 ERVVS 127
R VS
Sbjct: 146 RREVS 150
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ + Y + GFIL+Y IT + +FN + D QI + D+ ++LVGNKCD+EE
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVILVGNKCDMEE 142
Query: 123 ERVV 126
ERVV
Sbjct: 143 ERVV 146
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
+++++GS GVGK++L +F F E T+ ++ K VE+ G++ L+I DTAG E+
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 87
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F ++ Y ++ +G ILVY IT + TF+DL + I + ++D ++LVGNK D E +
Sbjct: 88 FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETD 146
Query: 124 RVVS 127
R ++
Sbjct: 147 REIT 150
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L +QF F +D TI + + V +DG+Q L+I DTAG E
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
F ++ Y + G +LVY IT + TFN L+ E R + ++ ++L+GNK DLE
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIMLIGNKSDLES 140
Query: 123 ERVV 126
R V
Sbjct: 141 RRDV 144
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQF 64
++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E+F
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
+ Y + G I+VY +T Q +FN++ ++I R +++V +LVGNKCDL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 115
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+KI+++G+ VGK++ ++ F + T+ ++ K + + ++ L+I DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ + Y + GFIL Y IT + +FN + D QI + D+ ++LVGNKCD E+
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQVLLVGNKCDXED 127
Query: 123 ERVVSG 128
ERVVS
Sbjct: 128 ERVVSS 133
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L +QF F +D TI + + + +DG+Q L+I DTAG E
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
F ++ Y + G +LVY IT + TFN L+ E R ++ ++L+GNK DLE
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIMLIGNKSDLES 129
Query: 123 ERVV 126
R V
Sbjct: 130 RREV 133
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 63
K+++LG GVGK++L Q+V F +Y TI D K+V VD + ++I DTAG E+
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDL 120
F ++ + + +LV+ +TA +TF L R++ L +D ++ P V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 121 EEERVVS 127
E +V +
Sbjct: 130 ENRQVAT 136
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 63
K+++LG GVGK++L Q+V F +Y TI D K+V VD + ++I DTAG E+
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDL 120
F ++ + + +LV+ +TA +TF L R++ L +D ++ P V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 121 EEERVVS 127
E +V +
Sbjct: 130 ENRQVAT 136
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 63
K+++LG GVGK++L Q+V F +Y TI D K+V VD + ++I DTAG E+
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDL 120
F ++ + + +LV+ +TA +TF L R++ L +D ++ P V++GNK DL
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 121 EEERVVS 127
E +V +
Sbjct: 130 ENRQVAT 136
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L QF + F+ TI + + +EV GQ+ L+I DTAG E
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ Y + G ++VY IT +ST+N LS + + + V ++L+GNK DLE
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA 134
Query: 123 ERVVS 127
+R V+
Sbjct: 135 QRDVT 139
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q ++ ++ ++I R +++V +LVGNK DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 ERVV 126
++VV
Sbjct: 129 KKVV 132
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI ++ + +E+DG+ L+I DTAG E
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T Q ++ ++ ++I R +++V +LVGNK DL
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 ERVV 126
++VV
Sbjct: 129 KKVV 132
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 4/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 63
K+++LG GVGK++L Q+V F +Y TI D K+V VD + ++I DTAG E+
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDL 120
F ++ + + +LV+ +TA +TF L R++ L +D ++ P V++GNK D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 121 EEERVVS 127
E +V +
Sbjct: 130 ENRQVAT 136
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI+ ++ Q V +D EI DTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ + L GNK DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLA 123
Query: 122 EERVV 126
+R V
Sbjct: 124 SKRAV 128
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS+L ++F F Y TI ++ + VE++G++ L+I DTAG E
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T+ +F ++ +I ++ DDV +LVGNK D E
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPE 127
Query: 123 ERVV 126
+VV
Sbjct: 128 RKVV 131
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 17/137 (12%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------EDSYRKQVEVDGQQC-- 51
M Y++V++G GVGKS L IF +D ED+Y + + VDG+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI 58
Query: 52 -MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 110
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P
Sbjct: 59 ILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 111 MVLVGNKCDLEEERVVS 127
++LVGNK DL R VS
Sbjct: 117 IILVGNKSDLVRXREVS 133
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+KI++LG GGVGKS+L ++V F + TI + K +EVDG ++I DTAG E
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCD 119
+F ++R + + +L +S+ +F +LS+ +++ + VK+ + P V++GNK D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 120 LEEERV 125
++E +V
Sbjct: 132 IKERQV 137
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTA 59
+RE K+ +LG GVGKS++ +FV+ F +PTI S+ K V+ + I DTA
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E+F A+ +Y + I+VY IT + TF+ L + +RE LR + + + GNKC
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAIAGNKC 120
Query: 119 DLEEERVV 126
DL + R V
Sbjct: 121 DLTDVREV 128
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTA 59
+RE K+ +LG GVGKS++ +FV+ F +PTI S+ K V+ + I DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F A+ +Y + I+VY IT + TF+ L + + LR + + + GNKCD
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQHGPPSIVVAIAGNKCD 122
Query: 120 LEEERVV 126
L + R V
Sbjct: 123 LTDVREV 129
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 17/137 (12%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------EDSYRKQVEVDGQQC-- 51
M Y++V++G GVGKS L IF +D ED+Y + + VDG+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI 58
Query: 52 -MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 110
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P
Sbjct: 59 ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 111 MVLVGNKCDLEEERVVS 127
++LVGNK DL R VS
Sbjct: 117 IILVGNKSDLVRXREVS 133
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+++LG+ GVGKSAL F G+ +Y + + VDG++ L + D +
Sbjct: 3 YKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 124 RVVS 127
R VS
Sbjct: 122 REVS 125
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+++LG+ GVGKSAL F G+ +Y + + VDG++ L + D +
Sbjct: 8 YKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 124 RVVS 127
R VS
Sbjct: 127 REVS 130
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+++LG+ GVGKSAL F G+ +Y + + VDG++ L + D +
Sbjct: 8 YKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 126
Query: 124 RVVS 127
R VS
Sbjct: 127 REVS 130
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT Q TF +++ R + + + + L GNK DL
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIALAGNKADLA 126
Query: 122 EERVV 126
+R+V
Sbjct: 127 NKRMV 131
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M Y++V+LG GVGK++L F + ++ ED Y + + VDG+ L ++DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 61 TEQF--TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118
E+ + ++ ++ G +++VYSI + +F S+LR Q+ R D VP++LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 119 DLEEERVVS 127
DL R VS
Sbjct: 122 DLARCREVS 130
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L+I DTAG E+
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G ILVY IT + TF ++ + + D+ ++LVGNK D+ E
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDM-ET 122
Query: 124 RVVSG 128
RVV+
Sbjct: 123 RVVTA 127
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + + Y TI ++ + + ++ + L+I DTAG E
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T + +F+++ ++I R ++V +LVGNKCDL
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGNKCDLVS 128
Query: 123 ERVVS 127
+RVV+
Sbjct: 129 KRVVT 133
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTA 59
+RE K+ +LG GVGKS++ +FVQ F PTI S+ K V + I DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ +Y + ++VY IT Q +F L ++ L+ +++ M + GNKCD
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCD 139
Query: 120 LEEERVVS 127
L + R V
Sbjct: 140 LSDIREVP 147
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L QF + F+ TI + + +EV GQ+ L+I DTAG
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ Y + G ++VY IT +ST+N LS + + + V ++L+GNK DLE
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA 149
Query: 123 ERVVS 127
+R V+
Sbjct: 150 QRDVT 154
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K+++LG GGVGKS+L ++V F + TI + K +EVDG ++I DTAG E
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCD 119
+F ++R + + +L +S+ +F +LS+ +++ + VK+ + P V++GNK D
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 120 LEEERV 125
+ E +V
Sbjct: 130 ISERQV 135
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ + L GNK DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLA 123
Query: 122 EERVV 126
+R V
Sbjct: 124 SKRAV 128
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ + L GNK DL
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKADLA 121
Query: 122 EERVV 126
+R V
Sbjct: 122 SKRAV 126
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K+++LG GGVGKS+L ++V F + TI + K +EVDG ++I DTAG E
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCD 119
+F ++R + + +L +S+ +F +LS+ +++ + VK+ + P V++GNK D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 120 LEEERV 125
+ E +V
Sbjct: 128 ISERQV 133
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ + Y + GF+L+Y I Q +F + D QI + D+ ++LVGNKCDLE+
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVILVGNKCDLED 141
Query: 123 ERVVSG 128
ERVV
Sbjct: 142 ERVVPA 147
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGK+ + +F + F + TI ++ + +E+DG++ L+I DTAG E
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDL 120
+F + Y + G +LVY IT + +F+ ++R I +++ + DV +++GNKCD+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 121 EEERVVS 127
++R VS
Sbjct: 126 NDKRQVS 132
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGK+ + +F + F + TI ++ + +E+DG++ L+I DTAG E
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDL 120
+F + Y + G +LVY IT + +F+ ++R I +++ + DV +++GNKCD+
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 121 EEERVVS 127
++R VS
Sbjct: 124 NDKRQVS 130
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L+I DTAG E+
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G ILVY IT + TF ++ + + D+ ++LVGNK D E
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSD-XET 122
Query: 124 RVVSG 128
RVV+
Sbjct: 123 RVVTA 127
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 17/134 (12%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------EDSYRKQVEVDGQQC---ML 53
Y++V++G GVGKS L IF +D ED+Y + + VDG+ +L
Sbjct: 38 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++L
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 114 VGNKCDLEEERVVS 127
VGNK DL R VS
Sbjct: 151 VGNKSDLVRCREVS 164
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 77/134 (57%), Gaps = 17/134 (12%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-------EDSYRKQVEVDGQQC---ML 53
Y++V++G GVGKS L IF +D ED+Y + + VDG+ +L
Sbjct: 7 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++L
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 114 VGNKCDLEEERVVS 127
VGNK DL R VS
Sbjct: 120 VGNKSDLVRCREVS 133
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L++ DTAG E+
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G ILVY +T + TF ++ + + D+ ++LVGNK D+ E
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDM-ET 126
Query: 124 RVVSG 128
RVV+
Sbjct: 127 RVVTA 131
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +V+GS G GKS L QF++ F + + TI + + V V G+ L+I DTAG E
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F ++ Y + G +LVY IT++ T+N L+ R + ++ ++L GNK DL+
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA-RTLASPNIVVILCGNKKDLDP 144
Query: 123 ERVVS 127
ER V+
Sbjct: 145 EREVT 149
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L++ DTAG E+
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G ILVY +T + TF ++ + + D+ ++LVGNK D+ E
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDM-ET 139
Query: 124 RVVSG 128
RVV+
Sbjct: 140 RVVTA 144
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 123
Query: 122 EERVV 126
+R V
Sbjct: 124 NKRAV 128
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 125
Query: 122 EERVV 126
+R V
Sbjct: 126 NKRAV 130
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS+L ++F F + TI ++ K + VDG + L I DTAG E+
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + QG ILVY +T + TF L + ++ +D+ LVGNK D E
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENR 136
Query: 124 RV 125
V
Sbjct: 137 EV 138
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K V++G G VGK++L V + + +Y PT D++ V VDG+ L++ DTAG ++F
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+R L N F+L +S+ + S+F ++S+ +R P++LVG + DL E+
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLRED 139
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+R K+V++G GG GK++L + F G F E Y PT+ + Y ++V G+ L I DTAG
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
+ + +R L+ + +L + +T+ ++F+++ + R VP+++VG K DL
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPIIVVGCKTDL 150
Query: 121 EEER 124
+++
Sbjct: 151 RKDK 154
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 63
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L++ DTAG E+
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
F + Y + G ILVY +T + TF ++ + + D+ ++LVGNK D E
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSD-XET 122
Query: 124 RVVSG 128
RVV+
Sbjct: 123 RVVTA 127
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
R K V +G G VGK+ L + + F Y PT+ D++ V V+G L + DTAG
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
E + +R L + FIL +S+ +++++ ++S ++ I +K VP+VLVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIVLVGTKLDL 124
Query: 121 EEER 124
+++
Sbjct: 125 RDDK 128
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQ 63
K+++LG GGVGKS+L ++V F + TI + + +EVDG+ L+I DTAG E+
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCDL 120
F ++R + + +L +S+ + +F +L + +++ + VKD + P V++GNK D
Sbjct: 69 FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDK 128
Query: 121 EEERVVS 127
E+ +V +
Sbjct: 129 EDRQVTT 135
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQ-CMLEILDTAGTE 62
K+++LG GVGK++L ++V + ++Y TI D K+V VDG + +++ DTAG E
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCD 119
+F ++ + + +LVY +T S+F ++ R++ L V + P V++GNK D
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 120 LEEERVV 126
EE + +
Sbjct: 130 AEESKKI 136
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQ 63
K+V+LG VGKS++ ++FV F E +PTI ++ Q V ++ EI DTAG E+
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTF----NDLSDLREQILRVKDTDDVPMVLVGNKCD 119
F ++ Y +N Q ++VY +T +F + + +L EQ + D+ + LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-----SKDIIIALVGNKID 119
Query: 120 LEEE 123
+E
Sbjct: 120 XLQE 123
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
+K++++G GVGK+ L V+F G F+ + T+ +R +V +VDG + L++ DTAG
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F ++ Y ++ +L+Y +T +++F+++ +I DV ++L+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA 129
Query: 122 EERVV 126
ERVV
Sbjct: 130 HERVV 134
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 125
Query: 122 EERVV 126
+R V
Sbjct: 126 NKRAV 130
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQ-QCMLEILDT 58
MR+ KIVVLG G GK++LT F Q F ++Y TI D + +++ + G L+I D
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 59 AGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMV-LVGN 116
G M D Y+ QG +LVY IT +F +L D + +V + + P+V LVGN
Sbjct: 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 117 KCDLEEERVV 126
K DLE R +
Sbjct: 124 KIDLEHMRTI 133
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 4 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 63
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 64 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 122
Query: 121 EEER 124
+++
Sbjct: 123 RDDK 126
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K V +G G VGK+ + + + F Y PT+ D++ V VDGQ L + DTAG E +
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY 70
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ +R L + F+L +S+ +++++ N L ++ R +VP+VLVG K DL ++
Sbjct: 71 SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDD 128
Query: 124 R 124
+
Sbjct: 129 K 129
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 LEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGT 61
++K+V+LG VGKS+L ++FV+G F E + TI ++ Q V +D EI DTAG
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ + L GNK DL
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA 124
Query: 122 EERVV 126
+R V
Sbjct: 125 NKRAV 129
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +V+G+ G GKS L QF++ F + + TI + K + V G+ L+I DTAG E
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++L GNK DL+
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDA 127
Query: 123 ERVVS 127
+R V+
Sbjct: 128 DREVT 132
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 20 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 79
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 80 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 138
Query: 121 EEER 124
+++
Sbjct: 139 RDDK 142
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G VGK+ + +F G F E+ TI D K +E+ G++ L+I DTAG E
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y ++ G IL Y IT +S+F + E + + ++ V + L+GNK DL E
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL-LIGNKSDLSE 148
Query: 123 ERVVS 127
R VS
Sbjct: 149 LREVS 153
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +V+G+ G GKS L QF++ F + + TI + K + V G+ L+I DTAG E
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++L GNK DL+
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDA 129
Query: 123 ERVVS 127
+R V+
Sbjct: 130 DREVT 134
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 62
+K +V+G+ G GKS L QF++ F + + TI + K + V G+ L+I DTAG E
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++L GNK DL+
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVIILCGNKKDLDA 130
Query: 123 ERVVS 127
+R V+
Sbjct: 131 DREVT 135
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 8 MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 67
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 126
Query: 121 EEER 124
+++
Sbjct: 127 RDDK 130
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
R K V +G G VGK+ + + + F Y PT+ D++ V VDG L + DTAG
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQ 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + +R L + FIL +S+ +++++ +++ LR VP++LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
Query: 122 EER 124
+++
Sbjct: 124 DDK 126
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E + +LG G GKSALTV+F+ F+ +YDP +ED+Y + VD Q L ++DTA +
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DVPMVLVGNKCDL 120
+ Y+ F++VYS+ ++ +F+ S E + L K+T +P +L+GNK D+
Sbjct: 81 TPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 121 EEERVVS 127
+ R V+
Sbjct: 140 AQYRQVT 146
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAG 60
+ YKIV+ G VGKS+ ++ + F E T+ D K + VDG++ +L++ DTAG
Sbjct: 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAG 86
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKC 118
E+F ++ Y + G +L+Y +T + +F ++RE + ++D + VP++LVGNK
Sbjct: 87 QERFRSIAKSYFRKADGVLLLYDVTCEKSF---LNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 119 DLEEERVVSG 128
D+ + G
Sbjct: 144 DIRDTAATEG 153
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GG GK+ + + G F +KY TI + + + + ++ DTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 123
Query: 123 ERV 125
+V
Sbjct: 124 RKV 126
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R P++LVG K DL
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDL 120
Query: 121 EEER 124
+++
Sbjct: 121 RDDK 124
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 2 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R P++LVG K DL
Sbjct: 62 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDL 120
Query: 121 EEER 124
+++
Sbjct: 121 RDDK 124
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GG GK+ + + G F +KY TI + + + + ++ DTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 122
Query: 123 ERV 125
+V
Sbjct: 123 RKV 125
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 123
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 150
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 91
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 150
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 123
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 74
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 75 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 133
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GG GK+ + + G F +KY TI + + + + ++ DTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 130
Query: 123 ERV 125
+V
Sbjct: 131 RKV 133
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY PT+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F+ + +R + P++LVG K DL +++
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 275
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F+ + +R + P++LVG K DL +++
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 275
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 216
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F+ + +R + P++LVG K DL +++
Sbjct: 217 DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 275
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY PT+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL ++
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQD 144
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL ++
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFXPNVPIILVGNKKDLRQD 144
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
R K V +G G VGK+ + + + F Y PT+ D++ V VDG L + DTAG
Sbjct: 5 RFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
E + +R L + F+L +S+ +++++ ++ ++ + +K +P+VLVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIH--KKWLPELKHYAPGIPIVLVGTKLDL 122
Query: 121 EEER 124
+++
Sbjct: 123 RDDK 126
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 11/133 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-----------DGQQCML 53
K + LG GVGK+++ Q+ G F K+ T+ +R++ V GQ+ L
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L++ +T + +F ++ + Q+ +++ +VL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 114 VGNKCDLEEERVV 126
GNK DLE++R V
Sbjct: 133 CGNKSDLEDQRAV 145
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F E+Y PT+ D Y V V G+Q +L + DTAG E +
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L F++ +S+ ++F ++ + E + +K+ +VP +L+G + DL ++
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKE--EWVPELKEYAPNVPFLLIGTQIDLRDD 137
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 123
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 122
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 128
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 127
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 126
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 126
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 5 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 64
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L ++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 65 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 123
Query: 121 EEER 124
+++
Sbjct: 124 RDDK 127
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L ++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+VV+G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +S+ + + ++ + + + VK +VP++LV NK DL +
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPIILVANKKDLRSD 144
Query: 124 RVV 126
V
Sbjct: 145 EHV 147
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 91
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 92 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 150
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 2/125 (1%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQ 63
K+V+LG G GKS+L ++FV+ FVE + TI ++ Q + V+ EI DTAG E+
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ ++ +Y + I+V+ +T Q++F ++ L+ + ++ M L GNK DL +
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE-LQAQGNPNMVMALAGNKSDLLDA 132
Query: 124 RVVSG 128
R V+
Sbjct: 133 RKVTA 137
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y+++ ++VY IT ++F+ S + + R + DV ++LVGNK D
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNKTD 130
Query: 120 LEEERVVS 127
L ++R VS
Sbjct: 131 LSDKRQVS 138
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+KIV++G GVGKS L +F + F TI + + +E++G++ +I DTAG E
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTDDVPMVLVGNKC 118
++ A+ Y + G ++VY I+ S++ + LS+LRE D+V + L+GNK
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-----DDNVAVGLIGNKS 128
Query: 119 DLEEERVV 126
DL R V
Sbjct: 129 DLAHLRAV 136
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG
Sbjct: 1 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + +++ ++ +R P++LVG K DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDL 119
Query: 121 EEER 124
+++
Sbjct: 120 RDDK 123
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L ++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 125
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG E +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L ++ +S+ + ++F ++ +R + P++LVG K DL +++
Sbjct: 65 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDK 123
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 123
Query: 122 EERV 125
+ +V
Sbjct: 124 DRKV 127
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y+++ ++VY IT ++F + + + R + DV ++LVGNK D
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LEEERVVS 127
L ++R VS
Sbjct: 123 LADKRQVS 130
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++LVGNK DL
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 139
Query: 123 ERVV 126
R V
Sbjct: 140 LRAV 143
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++LVGNK DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 127
Query: 123 ERVV 126
R V
Sbjct: 128 LRAV 131
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 129
Query: 122 EERV 125
+ +V
Sbjct: 130 DRKV 133
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++LVGNK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 148
Query: 123 ERVV 126
R V
Sbjct: 149 LRAV 152
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++LVGNK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 148
Query: 123 ERVV 126
R V
Sbjct: 149 LRAV 152
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 132
Query: 122 EERV 125
+ +V
Sbjct: 133 DRKV 136
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 120
Query: 122 EERV 125
+ +V
Sbjct: 121 DRKV 124
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL ++
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQD 124
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 122
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ + LVGNK DL
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRH 124
Query: 123 ERVV 126
R V
Sbjct: 125 LRAV 128
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 119
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y+++ ++VY IT ++F + + + R + DV ++LVGNK D
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 129
Query: 120 LEEERVVS 127
L ++R VS
Sbjct: 130 LADKRQVS 137
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDL 119
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LVY I T+ ++ ++ LR ++ + LVGNK DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXLVGNKSDLRH 130
Query: 123 ERVV 126
R V
Sbjct: 131 LRAV 134
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 127
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+ + +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y+++ ++VY IT ++F + + + R + DV ++LVGNK D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LEEERVVS 127
L ++R VS
Sbjct: 123 LADKRQVS 130
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+KIV++G GVGKS L +F F + TI + + +EV+ ++ +I DTAG E
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G ++VY I+ S++ + + + LR D+V + L+GNK DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTE-LRENADDNVAVGLIGNKSDLAH 129
Query: 123 ERVV 126
R V
Sbjct: 130 LRAV 133
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 61
+YK+V LG VGK+++ +F F Y TI D K + +D L++ DTAG
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F ++ Y+++ I+VY IT + +F + + + IL + DV + LVGNK DL
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLG 119
Query: 122 EERVVS 127
+ R V+
Sbjct: 120 DLRKVT 125
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTA
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y+++ ++VY IT ++F + + + R + DV ++LVGNK D
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 132
Query: 120 LEEERVVS 127
L ++R VS
Sbjct: 133 LADKRQVS 140
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCM-LEILDTAGT 61
+KIV++G GVGKS L +F + F + TI + K +++ + + +I DTAG
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ A+ Y + G +LVY IT +++F ++ ++ LR ++ ++LVGNK DL+
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE-LRDNADSNIVILLVGNKSDLK 126
Query: 122 EERVVS 127
RV++
Sbjct: 127 HLRVIN 132
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 20/143 (13%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 3 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 61 TEQFTAMRDLYMKNGQG-------------------FILVYSITAQSTFNDLSDLREQIL 101
E + +R L G F++ +S+ + ++F ++ +
Sbjct: 63 QEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV 122
Query: 102 RVKDTDDVPMVLVGNKCDLEEER 124
R + P++LVG K DL +++
Sbjct: 123 R-HHCPNTPIILVGTKLDLRDDK 144
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG
Sbjct: 8 MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG 67
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + +++ ++ +R P++LVG K DL
Sbjct: 68 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDL 126
Query: 121 EEER 124
+++
Sbjct: 127 RDDK 130
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQ----------QCML 53
K++ LG GVGK+ ++ F K+ T+ +R K+V D Q + L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +VL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 114 VGNKCDLEEERVVS 127
+GNK DL ++R V+
Sbjct: 133 IGNKADLPDQREVN 146
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ + Y + G +LVY I T+ ++ ++ LR ++ ++LVGNK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRH 124
Query: 123 ERVV 126
R V
Sbjct: 125 LRAV 128
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQ----------QCML 53
K++ LG GVGK+ ++ F K+ T+ +R K+V D Q + L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L + +T+Q +F ++ + Q+ ++ +VL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 114 VGNKCDLEEERVVS 127
+GNK DL ++R V+
Sbjct: 133 IGNKADLPDQREVN 146
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G F +KY T+ V + + DTAG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F + D Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 EERV 125
+ +V
Sbjct: 128 DRKV 131
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 62
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 119
Query: 119 DLEEE 123
DL ++
Sbjct: 120 DLRDD 124
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 11/134 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQ----------QCML 53
K++ LG GVGK+ ++ F K+ T+ +R K+V D Q + L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L + +T+Q +F ++ + Q+ ++ +VL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 114 VGNKCDLEEERVVS 127
+GNK DL ++R V+
Sbjct: 133 IGNKADLPDQREVN 146
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 62
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 63 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 119
Query: 119 DLEEE 123
DL ++
Sbjct: 120 DLRDD 124
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 63
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 120
Query: 119 DLEEE 123
DL ++
Sbjct: 121 DLRDD 125
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 11 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 70
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 71 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 127
Query: 119 DLEEE 123
DL ++
Sbjct: 128 DLRDD 132
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQ----------QCML 53
K++ LG GVGK+ ++ F K+ T+ +R K+V D Q + L
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +VL
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 114 VGNKCDLEEERVVS 127
+GNK DL ++R V+
Sbjct: 133 IGNKADLPDQREVN 146
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 LEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 2 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 62 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 118
Query: 119 DLEEE 123
DL ++
Sbjct: 119 DLRDD 123
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 8 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 67
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 119 DLEEE 123
DL ++
Sbjct: 125 DLRDD 129
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 4 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 63
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 64 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 120
Query: 119 DLEEE 123
DL ++
Sbjct: 121 DLRDD 125
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQ----------QCML 53
K++ LG GVGK+ ++ F K+ T+ +R K+V + Q + L
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 113
++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +VL
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 114 VGNKCDLEEERVVS 127
+GNK DL ++R V+
Sbjct: 147 IGNKADLPDQREVN 160
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 8 MQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 67
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 68 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 119 DLEEE 123
DL ++
Sbjct: 125 DLRDD 129
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G GK+ L + F + F Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
R L + ++ +SI + + ++ + + VK +VP++LVGNK DL +
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRND 124
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDGQQCMLEILDTAGT 61
++K+V++G GG GK+ + + G +KY T+ V + + DTAG
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D++
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 132
Query: 122 EERV 125
+ +V
Sbjct: 133 DRKV 136
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG E +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKCDLEE 122
+R L F++ +S+ + S+F +++E+ + P +LVG + DL +
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 123 E 123
+
Sbjct: 122 D 122
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 16/133 (12%)
Query: 4 YKIVVLGSGGVGKSALTVQF--VQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+K++++G GVGKS L F +QG E +P ED+Y +++ VD ++ L + D
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENP--EDTYERRIMVDKEEVTLVVYDI-- 79
Query: 61 TEQFTA---MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLV 114
EQ A +RD ++ G F++V+S+T + +F S + E +LR++ D+P++LV
Sbjct: 80 WEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILV 136
Query: 115 GNKCDLEEERVVS 127
GNK DL R VS
Sbjct: 137 GNKSDLARSREVS 149
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G VGK+ L + + F +Y PT+ D+Y V VD + L + DTAG E +
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 70
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
+R L F++ +S+ + +++ ++ +R P++LVG K DL +++
Sbjct: 71 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRDDK 129
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 61
++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTAG
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F ++ Y+++ ++VY IT ++F + + + R + DV ++LVGNK DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLA 119
Query: 122 EERVVS 127
++R VS
Sbjct: 120 DKRQVS 125
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG E +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKCDLEE 122
+R L F++ +S+ + S+F +++E+ + P +LVG + DL +
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 123 E 123
+
Sbjct: 122 D 122
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG E +
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKCDLEE 122
+R L F++ +S+ + S+F +++E+ + P +LVG + DL +
Sbjct: 69 DRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 123 E 123
+
Sbjct: 126 D 126
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG E +
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKCDLEE 122
+R L F++ +S+ + S+F +++E+ + P +LVG + DL +
Sbjct: 69 DRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 123 E 123
+
Sbjct: 126 D 126
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 61
++K+V LG VGK++L +F+ F Y TI D K + ++ + L++ DTAG
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F ++ Y+++ ++VY IT ++F S + + R + DV ++LVGNK DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVGNKTDLA 120
Query: 122 EERVVS 127
++R ++
Sbjct: 121 DKRQIT 126
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 77/132 (58%), Gaps = 14/132 (10%)
Query: 4 YKIVVLGSGGVGKSALTVQF--VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+K+++LG GVGKS L F +QG + + + ED+Y +++ VD ++ L + D
Sbjct: 13 FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS-EDTYERRIMVDKEEVTLIVYDI--W 69
Query: 62 EQFTA---MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVG 115
EQ A ++D ++ G F++V+S+T + +F S + E +LR++ D+P++LVG
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVG 126
Query: 116 NKCDLEEERVVS 127
NK DL R VS
Sbjct: 127 NKSDLARSREVS 138
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + F +Y P + D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 77/132 (58%), Gaps = 14/132 (10%)
Query: 4 YKIVVLGSGGVGKSALTVQF--VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+K++++G GVGKS L F +QG + + + ED+Y +++ VD ++ L + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS-EDTYERRIMVDKEEVTLIVYDI--W 59
Query: 62 EQFTA---MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVG 115
EQ A ++D ++ G F++V+S+T + +F S + E +LR++ D+P++LVG
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVG 116
Query: 116 NKCDLEEERVVS 127
NK DL R VS
Sbjct: 117 NKSDLARSREVS 128
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + +G F E Y PT+ ++Y VEVDG++ L + DTAG E +
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + ++ + ++L VP++LVG K DL +
Sbjct: 72 DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF--CQGVPIILVGCKVDLRND 129
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G G VGK+ L + + +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ KIVV+G G VGK+ L + F +G Y PT+ +++ ++ ++ +L + DTAG
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ +R L + +L +++ +++F+++S E ++ D VLVG K DL
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLR 140
Query: 122 EE 123
++
Sbjct: 141 KD 142
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ KIVV+G G VGK+ L + F +G Y PT+ +++ ++ ++ +L + DTAG
Sbjct: 21 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E++ +R L + +L +++ +++F+++S E ++ D VLVG K DL
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLR 139
Query: 122 EE 123
++
Sbjct: 140 KD 141
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M+ K VV+G VGK+ L + + F +Y PT+ D+Y V + G+ L + DTAG
Sbjct: 1 MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR--VKDTDDVPMVLVGNKC 118
E + +R L F++ +S+ + S+F +++E+ + P +LVG +
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE---NVKEKWVPEITHHCPKTPFLLVGTQI 117
Query: 119 DLEEE 123
DL ++
Sbjct: 118 DLRDD 122
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KIVV+G GK+AL F + F E Y PT+ ++Y E+D Q+ L + DT+G+ +
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ + I+ T + + L++ +++ + M+LVG K DL
Sbjct: 85 DNVRPLSYPDSDAVLICFDISRPETLDSV--LKKWKGEIQEFCPNTKMLLVGCKSDL 139
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KIVV+G GK+AL F + F E Y PT+ ++Y E+D Q+ L + DT+G+ +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 120
+R L + ++ + I+ T + + L++ +++ + M+LVG K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSV--LKKWKGEIQEFCPNTKMLLVGCKSDL 123
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KIVV+G GK+AL F + F E Y PT+ ++Y E+D Q+ L + DT+G+ +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123
+R L + ++ + I+ T + + L++ +++ + M+LVG K DL +
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETLDSV--LKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD--GQQCMLEILDTAGT 61
YKI ++G GGVGK+ + + G F + Y+ T+ +D G + DTAG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+ ++D+Y G IL + +T++ T +L+ ++ V ++ P+V+ NK D++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK 130
Query: 122 EERVVS 127
+ +S
Sbjct: 131 NRQKIS 136
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM-LEILDTAGTE 62
+K+V++G GVGK+ L +F + F TI + + + G + +I DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LV+ +T T+ + +++ + V M LVGNK DL +
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-LVGNKSDLSQ 144
Query: 123 ERVV 126
R V
Sbjct: 145 AREV 148
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM-LEILDTAGTE 62
+K+V++G GVGK+ L +F + F TI + + + G + +I DTAG E
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
++ A+ Y + G +LV+ +T T+ + +++ + V M LVGNK DL +
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-LVGNKSDLSQ 129
Query: 123 ERVV 126
R V
Sbjct: 130 AREV 133
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E K+ ++G+ GKSAL +++ G +V++ P ++K++ VDGQ +L I D G
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 63 --QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 117
QF A D + V+S+ + +F + + ++ ++ +VPMVLVG +
Sbjct: 79 ELQFAAWVD-------AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G GK+A+ + + E Y PT+ ++Y +E + Q+ L + DT+G+ +
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDL 120
+R L + +L + I+ T + L R +IL + V +L+G K DL
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDL 127
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G GK+A+ + + E Y PT+ ++Y +E + Q+ L + DT+G+ +
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDL 120
+R L + +L + I+ T + L R +IL + V +L+G K DL
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDL 143
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G GK+A+ + + E Y PT+ ++Y +E + Q+ L + DT+G+ +
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDL 120
+R L + +L + I+ T + L R +IL + V +L+G K DL
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDL 126
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT- 61
E ++ VLG GKS+L +F+ G + + + T + Y+K++ VDGQ ++ I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 62 -EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDVPMVLVG--N 116
+F+ D I V+S+ +++F +S L Q+ LR + + + LVG +
Sbjct: 66 DAKFSGWAD-------AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 117 KCDLEEERVV 126
+ RVV
Sbjct: 119 RISASSPRVV 128
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT- 61
E ++ VLG GKS+L +F+ G + + + T + Y+K++ VDGQ ++ I + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 65
Query: 62 -EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDVPMVLVGNK 117
+F+ D I V+S+ +++F +S L Q+ LR + + + LVG +
Sbjct: 66 DAKFSGWAD-------AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 41/161 (25%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY---------------------- 40
YK V+LG VGKS++ ++ + F E + TI S+
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 41 --------------RKQVEVDGQQCML--EILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84
+ + C + +I DTAG E++ ++ LY + I+V+ I
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125
S N L + + ++K + + ++LV NK D + +V
Sbjct: 127 ---SNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQV 164
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKYD----------P-TIEDSYRKQVEVDGQQC 51
K+ V+G VGKSAL F F++ Y P TI D+ V V+
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT---TVSVE---- 74
Query: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 111
L +LDTAG++ + Y ILV+ +++ +F E + + + P+
Sbjct: 75 -LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL 133
Query: 112 --VLVGNKCDLEEER 124
VLV NK DL +R
Sbjct: 134 RAVLVANKTDLPPQR 148
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
++ +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 16 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNICFTVWDVGGQ 71
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y +N QG I V + +++D +++L V + D ++L NK DL
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLP 131
Query: 122 EERVVS 127
+S
Sbjct: 132 NAMAIS 137
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E ++ ++G GK+ G F E PT+ + RK V ++I D G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK---VTKGNVTIKIWDIGGQP 78
Query: 63 QFTAMRDLYMKNGQGFILVYSITA------QSTFNDLSDLREQILRVKDTDDVPMVLVGN 116
+F +M + Y + +VY I A +++ N+L +L ++ +P++++GN
Sbjct: 79 RFRSMWERYCRGVNA--IVYMIDAADREKIEASRNELHNLLDK----PQLQGIPVLVLGN 132
Query: 117 KCDL 120
K DL
Sbjct: 133 KRDL 136
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E ++ ++G GK+ G F E PT+ + RK + +++ D G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQP 78
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
+F +M + Y + + + Q + +L +P++++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E ++ ++G GK+ G F E PT+ + RK + +++ D G
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQP 87
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
+F +M + Y + + + Q + +L +P++++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPMVLVGNKC 118
++ + Y +N QG I V + N + RE+++R+ D D +++ NK
Sbjct: 71 DKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 119 DL 120
DL
Sbjct: 128 DL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 71
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPMVLVGNKC 118
++ + Y +N QG I V + N + RE+++R+ D D +++ NK
Sbjct: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 119 DL 120
DL
Sbjct: 129 DL 130
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 219
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPMVLVGNKC 118
++ + Y +N QG I V + N + RE+++R+ D D +++ NK
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 119 DL 120
DL
Sbjct: 277 DL 278
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
++ +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNICFTVWDVGGQ 83
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y +N QG I V + + +D +++L+ + D +++ NK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 122 EERVVS 127
VS
Sbjct: 144 NAMPVS 149
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + ++ D G
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTI-GSNVEEIVINNTRFLM--WDIGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130
Query: 122 E 122
E
Sbjct: 131 E 131
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + ++ D G
Sbjct: 21 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTI-GSNVEEIVINNTRFLM--WDIGGQ 76
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 77 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 136
Query: 122 E 122
E
Sbjct: 137 E 137
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + ++ D G
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTI-GSNVEEIVINNTRFLM--WDIGGQ 75
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135
Query: 122 E 122
E
Sbjct: 136 E 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + ++ D G
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTI-GSNVEEIVINNTRFLM--WDIGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130
Query: 122 E 122
E
Sbjct: 131 E 131
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF+ V PTI + E+ + + D G
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSNVE---EIVVKNTHFLMWDIGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVY-SITAQSTFNDLSDLREQILRVKDTDDV---PMVLVGNK 117
E + + Y N + ILV SI + L+ +E++ R+ +D+ +++ NK
Sbjct: 71 ESLRSSWNTYYSNTEFIILVVDSIDRER----LAITKEELYRMLAHEDLRKAAVLIFANK 126
Query: 118 CDLE 121
D++
Sbjct: 127 QDMK 130
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I+++G GK+ + + G V PTI + V+ + + D G ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 57
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPMVLVGNKCDL 120
+ Y +N QG I V + N + RE+++R+ D D +++ NK DL
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I+++G GK+ + + G V PTI + V+ + + D G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGLDKI 59
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPMVLVGNKCDL 120
+ Y +N QG I V + N + RE+++R+ D D +++ NK DL
Sbjct: 60 RPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 3 EYKIVVLGSGGVGKSALTVQ-FVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ ++V+G G+GKS L F+ ++ +Y P +K V+V+ G Q +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 53 LEILDTAG 60
L I+DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 3 EYKIVVLGSGGVGKSALTVQ-FVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ ++V+G G+GKS L F+ ++ +Y P +K V+V+ G Q +
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 53 LEILDTAG 60
L I+DT G
Sbjct: 67 LTIVDTPG 74
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I+++G GK+ + + G V PTI + V+ + + D G
Sbjct: 19 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQ 74
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
++ + Y +N QG I V + + D ++L + D +++ NK DL
Sbjct: 75 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 3 EYKIVVLGSGGVGKSAL-TVQFVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ ++V+G G+GKS L F+ ++ +Y P +K V+V+ G Q +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 53 LEILDTAG 60
L I+DT G
Sbjct: 90 LTIVDTPG 97
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 45 EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQIL 101
EV G + + G + A R L ++ G + V ++ + ++RE +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 102 RVKDT-DDVPMVLVGNKCDLEE 122
T DDVP+V+ NK DL +
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD 149
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 45 EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV-------YSITAQSTFNDLSDLR 97
EV G + + G + A R L ++ G + V A+S N +L
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLA 127
Query: 98 EQILRVKDTDDVPMVLVGNKCDLEE 122
E L + DDVP+V+ NK DL +
Sbjct: 128 EYGLTL---DDVPIVIQVNKRDLPD 149
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG GK+ + + G V PT+ + V + + D G
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVET---VTYKNVKFNVWDVGGQ 376
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y QG I V + ++ +I+ ++ D +++ NK DL
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 122 E 122
+
Sbjct: 437 D 437
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 3 EYKIVVLGSGGVGKSAL-TVQFVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ ++V+G G+GKS L F+ ++ E+ P + + V+++ G +
Sbjct: 5 EFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLR 64
Query: 53 LEILDTAGTEQFTAMRDLY 71
L ++DT G RD +
Sbjct: 65 LTVVDTPGYGDAINCRDCF 83
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 3 EYKIVVLGSGGVGKSALTVQ-FVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ ++V+G G+GKS L F+ ++ E+ P + + V+++ G +
Sbjct: 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 53 LEILDTAGTEQFTAMRDLY 71
L ++DT G RD +
Sbjct: 97 LTVVDTPGYGDAINCRDCF 115
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDGQQCMLEILDTAGTEQF 64
I+V+G GGVGKS+ TV + G V P + R V L I+DT G +
Sbjct: 42 ILVMGKGGVGKSS-TVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100
Query: 65 TAMRDLYMKNGQGFIL 80
+ D+ + + F+L
Sbjct: 101 GYINDMALNIIKSFLL 116
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIF------------VEKYDPTIEDSYRKQVEVDG 48
++E K+ ++G G GK++L Q + F V K P I K +E D
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI-----KGLENDD 93
Query: 49 Q--QCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81
+ +C+ D G E A +M ++L+
Sbjct: 94 ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLL 128
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 3 EYKIVVLGSGGVGKSALTVQ-FVQGIFVEKYDPTIEDSYRKQVEVD---------GQQCM 52
E+ + V+G G+GKS L F+ ++ E+ P + + V+++ G +
Sbjct: 37 EFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLR 96
Query: 53 LEILDTAGTEQFTAMRDLY 71
L ++DT G RD +
Sbjct: 97 LTVVDTPGYGDAINCRDCF 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG GK+ + + G V PT+ + V + + D G
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGL 67
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y QG I V + ++ +I+ ++ D +++ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 122 E 122
+
Sbjct: 128 D 128
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG GK+ + + G V PT+ + V + + D G
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGQ 67
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y QG I V + ++ +I+ ++ D +++ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 127
Query: 122 E 122
+
Sbjct: 128 D 128
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG GK+ + + G V PT+ + V + + D G
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGQ 66
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y QG I V + ++ +I+ ++ D +++ NK DL
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126
Query: 122 E 122
+
Sbjct: 127 D 127
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 112
+ LDT G F+AMR G + + + + E I KD VP+V
Sbjct: 54 ITFLDTPGHAAFSAMR----ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAH-VPIV 108
Query: 113 LVGNKCDLEE 122
L NKCD E
Sbjct: 109 LAINKCDKAE 118
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K++ LG GK+ L + ++ + PT + E+ D G Q
Sbjct: 3 KLLFLGLDNAGKTTL-LHMLKNDRLATLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQA 58
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
+ Y G + + F++ + + + + DVP V++GNK D
Sbjct: 59 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
Length = 289
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCML 53
M + + G GG+GKS T V + + DP DS R + Q ++
Sbjct: 1 MAMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIM 59
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFI 79
E+ AGT + + D+ +K G G +
Sbjct: 60 EMAAEAGTVEDLELEDV-LKAGYGGV 84
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
Length = 289
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
+ + G GG+GKS T V + + DP DS R + Q ++E+
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIMEMAA 62
Query: 58 TAGTEQFTAMRDLYMKNGQGFI 79
AGT + + D+ +K G G +
Sbjct: 63 EAGTVEDLELEDV-LKAGYGGV 83
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD 47
IV+ G+ GVGKS L++Q Q K++ + +S QV D
Sbjct: 5 IVIAGTTGVGKSQLSIQLAQ-----KFNGEVINSDSMQVYKD 41
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
+ + G GG+GKS T V + + DP DS R + Q ++E+
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIMEMAA 62
Query: 58 TAGTEQFTAMRDLYMKNGQGFI 79
AGT + + D+ +K G G +
Sbjct: 63 EAGTVEDLELEDV-LKAGYGGV 83
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
Length = 289
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
+ + G GG+GKS T V + + DP DS R + Q ++E+
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIMEMAA 62
Query: 58 TAGTEQFTAMRDLYMKNGQGFI 79
AGT + + D+ +K G G +
Sbjct: 63 EAGTVEDLELEDV-LKAGYGGV 83
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCML 53
M + + G GG+GKS T V + + DP DS R + Q ++
Sbjct: 1 MAMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIM 59
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFI 79
E+ AGT + + D+ +K G G +
Sbjct: 60 EMAAEAGTVEDLELEDV-LKAGYGGV 84
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
+ + G GG+GKS T V + + DP DS R + Q ++E+
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK-ADSTRLILHSKAQNTIMEMAA 62
Query: 58 TAGTEQFTAMRDLYMKNGQGFI 79
AGT + + D+ +K G G +
Sbjct: 63 EAGTVEDLELEDV-LKAGYGGV 83
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 4/115 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K++ LG GK+ L + ++ + PT + E+ D G Q
Sbjct: 25 KLLFLGLDNAGKTTL-LHMLKNDRLATLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQA 80
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
+ Y G + + F++ + + + + DVP V++GNK D
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E +I++LG GK+ + + G V PT+ + V + + D G +
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVET---VTYKNVKFNVWDVGGLD 57
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ + Y QG I V + ++ +I+ ++ D +++ NK DL +
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 117
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62
E +I++LG GK+ + + G V PT+ + V + + D G +
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVET---VTYKNVKFNVWDVGGLD 58
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ + Y QG I V + ++ +I+ ++ D +++ NK DL +
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 118
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65
I ++G G GKS + Q Q + +E YD E R +V + D G E F
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW------VFDLEGEEGF- 59
Query: 66 AMRDLYMK------NGQGFILVY---SITAQSTFNDLS 94
RD K QG +L S+ ++ T N LS
Sbjct: 60 --RDREEKVINELTEKQGIVLATGGGSVKSRETRNRLS 95
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQ 63
++++GS G GKS + + Q I EKY T + +EV D + M+ ++D+ T Q
Sbjct: 27 VILVGSPGSGKSTIAEELXQ-IINEKYH-TFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ 83
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V LG GK+ L + ++ + ++ PT+ + +++ + G D G EQ
Sbjct: 37 KLVFLGLDNAGKTTL-LHMLKDDRLGQHVPTLHPT-SEELTIAGMT--FTTFDLGGHEQA 92
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
+ Y+ G + + S + ++ + +VP++++GNK D
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKID 147
>pdb|3T8T|A Chain A, Crystal Structure Of Staphylococcus Aureus Cymr Oxidized
Form
Length = 143
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 56 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL 93
+ T G T M L K GQG I + SI ++ +DL
Sbjct: 6 ISTKGRYGLTLMISLAKKEGQGXISLKSIAEENNLSDL 43
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG-------IFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
+ + G GG+GKS T V + + +P DS R + Q ++E+
Sbjct: 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCNPK-ADSTRLILHSKAQNTIMEMAA 62
Query: 58 TAGTEQFTAMRDLYMKNGQGFI 79
AGT + + D+ +K G G +
Sbjct: 63 EAGTVEDLELEDV-LKAGYGGV 83
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTA 59
M+ Y+I ++G+ VGKS + + +++ + + + E +G++ +++D
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLP 58
Query: 60 GTEQFTA 66
G TA
Sbjct: 59 GVYSLTA 65
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTA 59
M+ Y+I ++G+ VGKS + + +++ + + + E +G++ +++D
Sbjct: 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLP 62
Query: 60 GTEQFTA 66
G TA
Sbjct: 63 GVYSLTA 69
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTA 59
M+ Y+I ++G+ VGKS + + +++ + + + E +G++ +++D
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLP 58
Query: 60 GTEQFTA 66
G TA
Sbjct: 59 GVYSLTA 65
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I++LG GK+ + + G V PT+ + V + + D G ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGQDKI 57
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ Y QG I V + ++ +I+ ++ D +++ NK DL +
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQC--MLEILDTAGTEQ 63
I+V G GGVGKS+ TV + G V P + R V V + L I+DT G +
Sbjct: 42 ILVXGKGGVGKSS-TVNSIIGERVVSISPFQSEGPRP-VXVSRSRAGFTLNIIDTPGLIE 99
Query: 64 FTAMRDLYMKNGQGFIL 80
+ D + + F+L
Sbjct: 100 GGYINDXALNIIKSFLL 116
>pdb|3T8R|A Chain A, Crystal Structure Of Staphylococcus Aureus Cymr
Length = 143
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 56 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL 93
+ T G T M L K GQG I + SI ++ +DL
Sbjct: 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDL 43
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I++LG GK+ + + G V PT+ + V + + D G ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGQDKI 57
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ Y QG I V + ++ +I+ ++ D +++ NK DL +
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I+ LG GK+ + + G V PT+ + V + + D G ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVE---TVTYKNVKFNVWDVGGQDKI 57
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ Y QG I V + ++ +I+ ++ D +++ NK DL +
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,314
Number of Sequences: 62578
Number of extensions: 144194
Number of successful extensions: 1078
Number of sequences better than 100.0: 375
Number of HSP's better than 100.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 379
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)