Query psy784
Match_columns 128
No_of_seqs 102 out of 1473
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 20:11:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.4E-34 3.1E-39 179.7 13.1 124 3-127 9-133 (205)
2 KOG0092|consensus 100.0 3E-32 6.4E-37 168.8 12.3 125 2-127 4-129 (200)
3 KOG0094|consensus 100.0 4.4E-32 9.5E-37 168.4 12.7 127 1-127 20-147 (221)
4 cd04136 Rap_like Rap-like subf 100.0 6.6E-31 1.4E-35 163.6 16.4 124 3-126 1-124 (163)
5 cd01875 RhoG RhoG subfamily. 100.0 5.9E-31 1.3E-35 168.2 16.0 121 1-123 1-122 (191)
6 cd04120 Rab12 Rab12 subfamily. 100.0 8E-31 1.7E-35 168.6 16.4 123 4-127 1-124 (202)
7 PTZ00369 Ras-like protein; Pro 100.0 1.1E-30 2.3E-35 166.8 16.7 126 1-126 3-128 (189)
8 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.7E-31 1.9E-35 165.0 16.0 126 2-127 1-126 (172)
9 cd04175 Rap1 Rap1 subgroup. T 100.0 1.4E-30 3E-35 162.6 16.1 124 3-126 1-124 (164)
10 KOG0098|consensus 100.0 7.1E-31 1.5E-35 162.0 13.3 124 3-127 6-130 (216)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-30 5.3E-35 164.2 15.7 118 3-122 5-123 (182)
12 cd04176 Rap2 Rap2 subgroup. T 100.0 4.2E-30 9.1E-35 160.2 15.8 123 3-125 1-123 (163)
13 cd04133 Rop_like Rop subfamily 100.0 2.9E-30 6.2E-35 163.0 15.0 119 4-124 2-121 (176)
14 cd04131 Rnd Rnd subfamily. Th 100.0 2.8E-30 6E-35 163.4 14.9 118 3-122 1-119 (178)
15 cd04121 Rab40 Rab40 subfamily. 100.0 7.3E-30 1.6E-34 162.8 16.5 123 3-127 6-129 (189)
16 smart00173 RAS Ras subfamily o 100.0 1E-29 2.2E-34 158.6 16.4 123 4-126 1-123 (164)
17 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.5E-29 3.3E-34 157.6 16.7 125 2-126 1-125 (164)
18 cd04122 Rab14 Rab14 subfamily. 100.0 1.4E-29 3E-34 158.5 16.5 123 3-126 2-125 (166)
19 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-29 2.3E-34 165.3 16.3 119 3-122 1-119 (222)
20 KOG0078|consensus 100.0 4.8E-30 1E-34 161.3 13.9 124 3-127 12-136 (207)
21 KOG0080|consensus 100.0 1.8E-30 3.9E-35 156.9 10.8 125 3-127 11-136 (209)
22 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.3E-29 2.8E-34 160.0 15.0 118 4-123 2-120 (175)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-29 5E-34 164.5 16.6 119 2-122 12-131 (232)
24 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.4E-29 7.4E-34 155.5 16.5 120 3-122 1-120 (162)
25 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-29 3.6E-34 161.4 15.3 122 5-126 1-124 (190)
26 cd04140 ARHI_like ARHI subfami 100.0 5.1E-29 1.1E-33 155.8 16.7 124 3-126 1-126 (165)
27 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.2E-29 7E-34 161.0 16.0 123 4-126 1-147 (202)
28 KOG0087|consensus 100.0 4E-30 8.6E-35 161.4 11.2 125 3-128 14-139 (222)
29 cd01871 Rac1_like Rac1-like su 100.0 3.7E-29 8E-34 157.8 15.4 118 3-122 1-119 (174)
30 cd01867 Rab8_Rab10_Rab13_like 100.0 7.7E-29 1.7E-33 155.3 16.4 123 3-126 3-126 (167)
31 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.3E-29 1.4E-33 160.0 16.3 122 4-125 1-127 (201)
32 cd04127 Rab27A Rab27a subfamil 100.0 9.5E-29 2.1E-33 156.4 16.3 124 3-126 4-138 (180)
33 cd01865 Rab3 Rab3 subfamily. 100.0 1.1E-28 2.5E-33 154.2 16.5 122 4-126 2-124 (165)
34 PF00071 Ras: Ras family; Int 100.0 5.2E-29 1.1E-33 155.1 14.8 122 5-127 1-123 (162)
35 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-28 2.4E-33 154.7 16.0 124 3-126 1-124 (168)
36 cd01864 Rab19 Rab19 subfamily. 100.0 1.6E-28 3.4E-33 153.5 16.5 124 2-126 2-126 (165)
37 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-28 2.6E-33 155.0 15.9 120 5-124 2-122 (170)
38 cd04119 RJL RJL (RabJ-Like) su 100.0 1.3E-28 2.7E-33 153.8 16.0 121 4-124 1-126 (168)
39 KOG0394|consensus 100.0 9.1E-30 2E-34 156.8 10.5 124 4-127 10-139 (210)
40 cd04143 Rhes_like Rhes_like su 100.0 9.2E-29 2E-33 163.4 16.1 123 4-126 1-131 (247)
41 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-28 3E-33 153.4 16.0 123 4-127 1-124 (161)
42 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.3E-28 2.8E-33 154.7 15.8 125 3-127 2-128 (170)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.2E-28 4.7E-33 153.0 16.4 123 3-126 2-125 (166)
44 cd01866 Rab2 Rab2 subfamily. 100.0 4.6E-28 9.9E-33 151.9 16.6 122 4-126 5-127 (168)
45 KOG0086|consensus 100.0 4.5E-29 9.8E-34 149.9 11.2 124 4-128 10-134 (214)
46 cd04109 Rab28 Rab28 subfamily. 100.0 3E-28 6.5E-33 158.3 16.1 123 4-126 1-127 (215)
47 KOG0079|consensus 100.0 3E-29 6.5E-34 149.8 10.4 122 4-127 9-131 (198)
48 cd04113 Rab4 Rab4 subfamily. 100.0 3.3E-28 7.2E-33 151.4 15.6 122 4-126 1-123 (161)
49 cd01868 Rab11_like Rab11-like. 100.0 5.4E-28 1.2E-32 151.0 16.3 123 3-126 3-126 (165)
50 PLN03071 GTP-binding nuclear p 100.0 3E-28 6.5E-33 158.7 15.7 120 1-122 11-131 (219)
51 cd04106 Rab23_lke Rab23-like s 100.0 4.4E-28 9.5E-33 150.8 15.3 121 4-126 1-124 (162)
52 cd04146 RERG_RasL11_like RERG/ 100.0 2.4E-28 5.3E-33 152.6 14.1 122 5-126 1-124 (165)
53 cd04134 Rho3 Rho3 subfamily. 100.0 2.1E-28 4.6E-33 156.2 14.1 118 5-124 2-120 (189)
54 cd04116 Rab9 Rab9 subfamily. 100.0 9.4E-28 2E-32 150.6 16.3 120 2-121 4-127 (170)
55 cd04111 Rab39 Rab39 subfamily. 100.0 7.6E-28 1.7E-32 156.0 16.4 124 3-126 2-127 (211)
56 cd04110 Rab35 Rab35 subfamily. 100.0 9.2E-28 2E-32 154.4 16.6 122 3-126 6-128 (199)
57 cd04125 RabA_like RabA-like su 100.0 9.2E-28 2E-32 153.0 16.2 122 4-126 1-123 (188)
58 cd04132 Rho4_like Rho4-like su 100.0 7.1E-28 1.5E-32 153.3 15.3 118 4-123 1-120 (187)
59 cd00877 Ran Ran (Ras-related n 100.0 7.3E-28 1.6E-32 150.9 15.0 117 4-122 1-118 (166)
60 cd01861 Rab6 Rab6 subfamily. 100.0 1.6E-27 3.4E-32 148.2 16.0 121 4-125 1-122 (161)
61 KOG0095|consensus 100.0 1.7E-28 3.8E-33 146.9 11.0 123 4-127 8-131 (213)
62 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-27 3E-32 152.6 16.0 122 4-126 1-124 (191)
63 PLN03110 Rab GTPase; Provision 100.0 1.5E-27 3.2E-32 155.1 16.2 123 3-126 12-135 (216)
64 smart00174 RHO Rho (Ras homolo 100.0 6.3E-28 1.4E-32 151.8 13.9 116 6-123 1-117 (174)
65 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-27 3.2E-32 151.5 15.4 116 4-121 1-117 (182)
66 cd04124 RabL2 RabL2 subfamily. 100.0 1.8E-27 3.9E-32 148.3 15.5 117 4-122 1-118 (161)
67 cd01860 Rab5_related Rab5-rela 100.0 2.6E-27 5.6E-32 147.5 16.1 121 3-124 1-122 (163)
68 PLN00023 GTP-binding protein; 100.0 1.9E-27 4E-32 160.4 16.4 123 1-123 19-166 (334)
69 KOG0093|consensus 100.0 7.1E-28 1.5E-32 143.8 12.3 123 4-127 22-145 (193)
70 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-27 3.1E-32 150.3 14.2 117 4-122 1-118 (173)
71 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-27 4.1E-32 149.6 14.3 118 4-123 1-119 (174)
72 cd04142 RRP22 RRP22 subfamily. 100.0 2.6E-27 5.6E-32 152.1 14.8 123 4-126 1-134 (198)
73 smart00175 RAB Rab subfamily o 100.0 5.4E-27 1.2E-31 146.0 15.8 121 4-125 1-122 (164)
74 cd04139 RalA_RalB RalA/RalB su 100.0 6.9E-27 1.5E-31 145.5 16.0 120 4-123 1-120 (164)
75 KOG0395|consensus 100.0 1.5E-27 3.3E-32 152.5 13.2 127 1-127 1-127 (196)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.5E-27 1.4E-31 145.9 15.7 121 4-126 1-125 (164)
77 cd04147 Ras_dva Ras-dva subfam 100.0 5.7E-27 1.2E-31 150.6 15.7 118 5-122 1-118 (198)
78 cd01862 Rab7 Rab7 subfamily. 100.0 7.9E-27 1.7E-31 146.4 16.0 120 4-123 1-124 (172)
79 cd00876 Ras Ras family. The R 100.0 8.9E-27 1.9E-31 144.4 15.8 122 5-126 1-122 (160)
80 cd04148 RGK RGK subfamily. Th 100.0 7.5E-27 1.6E-31 152.3 16.1 122 4-127 1-125 (221)
81 cd04123 Rab21 Rab21 subfamily. 100.0 9.8E-27 2.1E-31 144.5 15.9 122 4-126 1-123 (162)
82 cd04103 Centaurin_gamma Centau 100.0 6.4E-27 1.4E-31 145.6 14.9 118 4-127 1-120 (158)
83 cd04126 Rab20 Rab20 subfamily. 100.0 6.1E-27 1.3E-31 152.3 15.3 114 4-122 1-114 (220)
84 PLN03108 Rab family protein; P 100.0 1.3E-26 2.9E-31 150.1 16.6 123 3-126 6-129 (210)
85 cd01892 Miro2 Miro2 subfamily. 100.0 6.2E-27 1.3E-31 147.1 14.5 119 3-124 4-124 (169)
86 cd04137 RheB Rheb (Ras Homolog 100.0 1E-26 2.3E-31 147.1 15.6 122 4-125 2-123 (180)
87 PLN03118 Rab family protein; P 100.0 1.4E-26 3.1E-31 150.0 16.6 123 3-126 14-138 (211)
88 cd01870 RhoA_like RhoA-like su 100.0 8.9E-27 1.9E-31 146.7 14.6 119 3-123 1-120 (175)
89 cd01863 Rab18 Rab18 subfamily. 100.0 1.9E-26 4.1E-31 143.4 15.9 118 4-121 1-119 (161)
90 cd04118 Rab24 Rab24 subfamily. 100.0 1.8E-26 3.9E-31 147.6 15.7 117 4-122 1-119 (193)
91 cd04114 Rab30 Rab30 subfamily. 100.0 3.9E-26 8.5E-31 143.0 16.6 123 3-126 7-130 (169)
92 cd01893 Miro1 Miro1 subfamily. 100.0 2.2E-26 4.7E-31 144.1 15.3 119 4-125 1-120 (166)
93 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.5E-27 1.6E-31 146.0 13.2 117 5-126 1-117 (164)
94 cd04149 Arf6 Arf6 subfamily. 99.9 1.4E-26 3.1E-31 145.3 14.4 117 2-122 8-124 (168)
95 cd00157 Rho Rho (Ras homology) 99.9 1.2E-26 2.6E-31 145.4 14.0 120 4-124 1-120 (171)
96 smart00177 ARF ARF-like small 99.9 2.2E-26 4.8E-31 145.3 15.1 118 2-123 12-129 (175)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.4E-26 7.3E-31 145.4 15.7 120 2-122 2-123 (183)
98 cd04150 Arf1_5_like Arf1-Arf5- 99.9 1.7E-26 3.7E-31 143.7 13.8 115 4-122 1-115 (159)
99 PLN00223 ADP-ribosylation fact 99.9 1.6E-26 3.6E-31 146.6 13.9 118 2-123 16-133 (181)
100 smart00176 RAN Ran (Ras-relate 99.9 2.8E-26 6E-31 147.4 14.4 112 9-122 1-113 (200)
101 cd04161 Arl2l1_Arl13_like Arl2 99.9 6.2E-26 1.4E-30 142.2 14.6 116 5-124 1-116 (167)
102 PTZ00133 ADP-ribosylation fact 99.9 8.9E-26 1.9E-30 143.3 14.9 116 3-122 17-132 (182)
103 cd04154 Arl2 Arl2 subfamily. 99.9 1.1E-25 2.3E-30 141.8 15.1 118 2-123 13-130 (173)
104 cd00154 Rab Rab family. Rab G 99.9 1.8E-25 3.9E-30 137.9 15.7 117 4-121 1-118 (159)
105 KOG0088|consensus 99.9 3.4E-27 7.5E-32 142.6 6.7 124 3-127 13-137 (218)
106 KOG0393|consensus 99.9 6.2E-27 1.3E-31 147.6 7.8 122 1-123 2-124 (198)
107 cd04158 ARD1 ARD1 subfamily. 99.9 2E-25 4.4E-30 140.1 14.3 114 5-122 1-114 (169)
108 cd04129 Rho2 Rho2 subfamily. 99.9 4.1E-25 8.8E-30 140.8 14.5 118 3-122 1-119 (187)
109 cd01873 RhoBTB RhoBTB subfamil 99.9 6.8E-25 1.5E-29 140.6 14.9 116 3-122 2-134 (195)
110 PTZ00132 GTP-binding nuclear p 99.9 1.3E-24 2.7E-29 141.3 16.2 120 1-122 7-127 (215)
111 PF08477 Miro: Miro-like prote 99.9 4.9E-25 1.1E-29 130.9 13.0 115 5-119 1-119 (119)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.3E-24 2.9E-29 137.0 15.0 117 2-122 14-130 (174)
113 cd04157 Arl6 Arl6 subfamily. 99.9 1.5E-24 3.1E-29 134.9 14.3 116 5-123 1-119 (162)
114 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2E-24 4.4E-29 134.1 14.4 115 5-122 1-115 (160)
115 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.9E-24 4.1E-29 135.1 13.7 116 5-123 1-122 (167)
116 KOG0091|consensus 99.9 4.6E-25 1E-29 133.9 10.0 125 3-127 8-135 (213)
117 smart00178 SAR Sar1p-like memb 99.9 4.1E-24 8.9E-29 135.9 14.9 116 3-122 17-132 (184)
118 KOG0097|consensus 99.9 8E-25 1.7E-29 130.3 10.7 123 4-127 12-135 (215)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.9 4.2E-24 9.1E-29 132.5 14.5 116 5-124 1-116 (158)
120 cd04151 Arl1 Arl1 subfamily. 99.9 4.3E-24 9.3E-29 132.6 14.5 115 5-123 1-115 (158)
121 cd00879 Sar1 Sar1 subfamily. 99.9 5.2E-24 1.1E-28 135.8 15.1 117 2-122 18-134 (190)
122 cd04159 Arl10_like Arl10-like 99.9 4.9E-24 1.1E-28 131.6 14.5 116 6-124 2-117 (159)
123 PF00025 Arf: ADP-ribosylation 99.9 8.4E-24 1.8E-28 133.5 12.4 118 2-123 13-130 (175)
124 COG1100 GTPase SAR1 and relate 99.9 2.2E-23 4.8E-28 135.5 14.5 123 1-124 3-127 (219)
125 cd04105 SR_beta Signal recogni 99.9 6.2E-23 1.3E-27 132.3 12.9 120 5-124 2-125 (203)
126 KOG0073|consensus 99.9 1.5E-22 3.3E-27 122.8 13.6 116 2-121 15-130 (185)
127 KOG0081|consensus 99.9 5.2E-25 1.1E-29 133.2 2.9 124 4-127 10-143 (219)
128 cd04155 Arl3 Arl3 subfamily. 99.9 2.6E-22 5.6E-27 126.1 14.6 118 2-123 13-130 (173)
129 KOG0083|consensus 99.9 1.6E-24 3.4E-29 127.8 2.3 119 8-127 2-122 (192)
130 cd01890 LepA LepA subfamily. 99.9 7.2E-22 1.6E-26 124.7 12.9 114 5-123 2-134 (179)
131 TIGR00231 small_GTP small GTP- 99.9 1.9E-21 4.2E-26 119.5 14.3 120 3-123 1-123 (161)
132 cd01898 Obg Obg subfamily. Th 99.9 5.9E-22 1.3E-26 124.1 11.6 120 5-125 2-131 (170)
133 cd00882 Ras_like_GTPase Ras-li 99.9 2.5E-21 5.4E-26 118.0 14.1 117 8-124 1-118 (157)
134 KOG4252|consensus 99.9 8.7E-24 1.9E-28 130.3 3.0 123 3-127 20-143 (246)
135 KOG0075|consensus 99.9 1.4E-22 3E-27 121.1 7.1 117 3-122 20-136 (186)
136 PRK12299 obgE GTPase CgtA; Rev 99.9 2.8E-21 6.2E-26 132.4 13.5 118 5-124 160-287 (335)
137 KOG0070|consensus 99.9 8.1E-22 1.8E-26 122.0 9.7 118 2-123 16-133 (181)
138 cd01878 HflX HflX subfamily. 99.9 3.3E-21 7.3E-26 124.2 12.7 119 3-124 41-169 (204)
139 TIGR03156 GTP_HflX GTP-binding 99.9 3.3E-21 7.3E-26 132.9 13.3 118 4-124 190-317 (351)
140 TIGR00450 mnmE_trmE_thdF tRNA 99.9 4.6E-21 9.9E-26 135.6 13.6 112 3-122 203-324 (442)
141 cd01891 TypA_BipA TypA (tyrosi 99.9 8.7E-21 1.9E-25 121.5 13.7 114 5-123 4-132 (194)
142 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-20 2.4E-25 118.1 12.8 119 4-126 1-131 (168)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-20 3.6E-25 115.8 12.9 112 4-124 2-123 (157)
144 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.7E-20 3.6E-25 117.2 12.6 113 5-122 2-116 (168)
145 cd04171 SelB SelB subfamily. 99.9 2.8E-20 6E-25 115.7 13.0 111 5-123 2-119 (164)
146 PRK05291 trmE tRNA modificatio 99.9 1.1E-20 2.5E-25 134.1 12.4 113 3-124 215-337 (449)
147 KOG0071|consensus 99.9 2.4E-20 5.2E-25 110.8 11.1 120 2-125 16-135 (180)
148 cd01881 Obg_like The Obg-like 99.9 1.2E-20 2.6E-25 118.6 10.6 116 8-125 1-137 (176)
149 PF02421 FeoB_N: Ferrous iron 99.9 4.5E-21 9.7E-26 118.1 8.4 113 4-125 1-122 (156)
150 TIGR02729 Obg_CgtA Obg family 99.8 4.2E-20 9E-25 126.6 13.2 119 5-124 159-289 (329)
151 TIGR00436 era GTP-binding prot 99.8 5.5E-20 1.2E-24 123.2 13.0 111 5-123 2-122 (270)
152 PRK03003 GTP-binding protein D 99.8 9.9E-20 2.2E-24 130.2 13.9 113 3-122 211-336 (472)
153 cd01879 FeoB Ferrous iron tran 99.8 6.3E-20 1.4E-24 113.5 11.0 109 8-125 1-118 (158)
154 PRK03003 GTP-binding protein D 99.8 1.3E-19 2.8E-24 129.6 14.0 112 4-122 39-160 (472)
155 cd01894 EngA1 EngA1 subfamily. 99.8 9.4E-20 2E-24 112.5 10.9 111 7-124 1-121 (157)
156 KOG3883|consensus 99.8 3.6E-19 7.8E-24 107.3 12.9 124 3-126 9-136 (198)
157 PTZ00099 rab6; Provisional 99.8 2.4E-19 5.2E-24 113.3 12.5 100 26-126 3-103 (176)
158 PRK15494 era GTPase Era; Provi 99.8 2.1E-19 4.5E-24 123.7 13.1 114 3-123 52-175 (339)
159 PRK11058 GTPase HflX; Provisio 99.8 3E-19 6.4E-24 125.9 14.2 117 4-122 198-323 (426)
160 cd01895 EngA2 EngA2 subfamily. 99.8 6.1E-19 1.3E-23 110.3 13.4 114 3-123 2-128 (174)
161 cd00881 GTP_translation_factor 99.8 3.7E-19 8E-24 112.9 12.5 111 5-122 1-128 (189)
162 cd04163 Era Era subfamily. Er 99.8 3.7E-19 8E-24 110.4 12.0 115 1-122 1-125 (168)
163 TIGR02528 EutP ethanolamine ut 99.8 9.4E-20 2E-24 111.2 8.6 96 5-122 2-102 (142)
164 PRK12296 obgE GTPase CgtA; Rev 99.8 3.2E-19 6.9E-24 127.0 12.3 118 5-124 161-300 (500)
165 TIGR01393 lepA GTP-binding pro 99.8 5.5E-19 1.2E-23 128.9 13.7 113 5-122 5-136 (595)
166 TIGR03598 GTPase_YsxC ribosome 99.8 5.2E-19 1.1E-23 112.0 11.9 113 3-123 18-144 (179)
167 PRK12298 obgE GTPase CgtA; Rev 99.8 6.7E-19 1.4E-23 122.9 13.5 119 5-124 161-291 (390)
168 PRK12297 obgE GTPase CgtA; Rev 99.8 8.9E-19 1.9E-23 123.1 14.0 116 5-122 160-288 (424)
169 PRK00093 GTP-binding protein D 99.8 1E-18 2.2E-23 124.0 14.3 110 4-122 2-123 (435)
170 PRK04213 GTP-binding protein; 99.8 8.6E-20 1.9E-24 117.4 7.6 116 3-123 9-145 (201)
171 TIGR03594 GTPase_EngA ribosome 99.8 5.2E-19 1.1E-23 125.2 12.2 113 5-124 1-123 (429)
172 cd04168 TetM_like Tet(M)-like 99.8 5.8E-19 1.3E-23 116.2 11.5 113 5-122 1-130 (237)
173 cd01889 SelB_euk SelB subfamil 99.8 5E-19 1.1E-23 113.2 10.6 114 4-122 1-134 (192)
174 TIGR03594 GTPase_EngA ribosome 99.8 1.2E-18 2.6E-23 123.4 13.4 112 3-121 172-296 (429)
175 KOG0074|consensus 99.8 8E-19 1.7E-23 104.6 9.9 120 2-124 16-135 (185)
176 COG1160 Predicted GTPases [Gen 99.8 3.3E-19 7.2E-24 123.8 9.6 116 1-123 1-127 (444)
177 cd04169 RF3 RF3 subfamily. Pe 99.8 1.7E-18 3.7E-23 115.7 12.5 114 5-123 4-138 (267)
178 COG1159 Era GTPase [General fu 99.8 9.1E-19 2E-23 116.0 10.7 117 2-125 5-131 (298)
179 PRK09518 bifunctional cytidyla 99.8 1.6E-18 3.5E-23 129.0 13.3 113 4-123 451-576 (712)
180 PF00009 GTP_EFTU: Elongation 99.8 6E-18 1.3E-22 107.9 13.6 116 2-122 2-136 (188)
181 KOG1707|consensus 99.8 1.1E-18 2.5E-23 123.7 11.0 123 1-124 7-131 (625)
182 PRK00089 era GTPase Era; Revie 99.8 2.4E-18 5.1E-23 116.5 12.1 114 2-122 4-127 (292)
183 PRK09554 feoB ferrous iron tra 99.8 2.8E-18 6E-23 128.0 13.5 116 1-125 1-129 (772)
184 TIGR00487 IF-2 translation ini 99.8 4.9E-18 1.1E-22 123.6 14.2 114 3-122 87-201 (587)
185 PF01926 MMR_HSR1: 50S ribosom 99.8 8.8E-18 1.9E-22 99.4 12.8 105 5-117 1-116 (116)
186 CHL00189 infB translation init 99.8 4E-18 8.7E-23 126.1 13.5 115 3-122 244-361 (742)
187 cd01885 EF2 EF2 (for archaea a 99.8 3.5E-18 7.5E-23 111.4 11.3 112 5-121 2-138 (222)
188 PRK00093 GTP-binding protein D 99.8 5.3E-18 1.1E-22 120.4 13.2 114 3-123 173-299 (435)
189 cd04167 Snu114p Snu114p subfam 99.8 3.2E-18 6.8E-23 111.2 10.9 112 5-121 2-136 (213)
190 PF09439 SRPRB: Signal recogni 99.8 7.5E-19 1.6E-23 110.5 7.6 120 2-124 2-128 (181)
191 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.4E-18 9.6E-23 110.2 10.9 112 5-122 1-144 (208)
192 COG0486 ThdF Predicted GTPase 99.8 6.1E-18 1.3E-22 117.8 12.0 114 3-124 217-340 (454)
193 COG2229 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 103.7 11.7 120 1-125 8-138 (187)
194 COG1084 Predicted GTPase [Gene 99.8 7.5E-18 1.6E-22 112.9 11.7 116 4-124 169-296 (346)
195 PRK05433 GTP-binding protein L 99.8 1E-17 2.2E-22 122.4 13.4 114 5-123 9-141 (600)
196 cd01886 EF-G Elongation factor 99.8 1.4E-17 3E-22 111.5 12.9 111 5-122 1-130 (270)
197 KOG0076|consensus 99.8 1.2E-18 2.6E-23 106.9 6.9 120 3-124 17-142 (197)
198 KOG0096|consensus 99.8 2.7E-18 5.9E-23 106.7 8.5 120 3-124 10-130 (216)
199 PRK05306 infB translation init 99.8 1.3E-17 2.8E-22 124.3 13.7 114 2-122 289-403 (787)
200 KOG0077|consensus 99.8 4.1E-18 9E-23 103.9 8.6 113 4-123 21-136 (193)
201 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.3E-17 5.1E-22 105.7 12.3 114 2-122 1-132 (195)
202 PRK10218 GTP-binding protein; 99.8 2.8E-17 6.2E-22 119.9 14.0 116 4-124 6-136 (607)
203 PRK12317 elongation factor 1-a 99.8 9.5E-18 2.1E-22 118.8 11.2 117 2-122 5-153 (425)
204 PRK00454 engB GTP-binding prot 99.8 2.6E-17 5.6E-22 105.3 12.0 114 3-123 24-150 (196)
205 KOG1673|consensus 99.8 4.7E-18 1E-22 102.8 7.4 116 3-120 20-136 (205)
206 cd04170 EF-G_bact Elongation f 99.8 4.4E-17 9.5E-22 109.2 12.9 112 5-123 1-131 (268)
207 PRK09518 bifunctional cytidyla 99.8 4.1E-17 8.9E-22 121.6 13.9 112 4-122 276-397 (712)
208 cd01850 CDC_Septin CDC/Septin. 99.7 1.5E-17 3.3E-22 111.6 10.2 117 3-124 4-159 (276)
209 cd00880 Era_like Era (E. coli 99.7 1.4E-17 3.1E-22 102.3 9.3 111 8-124 1-120 (163)
210 TIGR00491 aIF-2 translation in 99.7 3.4E-17 7.5E-22 119.2 12.6 113 2-122 3-135 (590)
211 PRK15467 ethanolamine utilizat 99.7 1.8E-17 4E-22 103.1 9.7 98 5-122 3-105 (158)
212 TIGR01394 TypA_BipA GTP-bindin 99.7 3.8E-17 8.3E-22 119.2 12.6 115 5-124 3-132 (594)
213 TIGR00475 selB selenocysteine- 99.7 3.8E-17 8.2E-22 119.2 12.5 111 4-124 1-119 (581)
214 cd01896 DRG The developmentall 99.7 8.7E-17 1.9E-21 105.7 13.0 82 5-88 2-91 (233)
215 TIGR00483 EF-1_alpha translati 99.7 1.9E-17 4E-22 117.3 10.6 117 2-122 6-155 (426)
216 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.1E-17 6.7E-22 107.1 9.7 118 5-123 1-126 (232)
217 COG1160 Predicted GTPases [Gen 99.7 4.4E-17 9.6E-22 113.3 10.9 114 3-123 178-304 (444)
218 cd01888 eIF2_gamma eIF2-gamma 99.7 8.5E-17 1.8E-21 103.8 11.1 117 4-123 1-152 (203)
219 PRK00741 prfC peptide chain re 99.7 7.2E-17 1.6E-21 116.4 10.7 115 4-123 11-146 (526)
220 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.4E-16 7.3E-21 100.5 12.1 117 4-124 1-132 (196)
221 CHL00071 tufA elongation facto 99.7 2.6E-16 5.5E-21 111.0 12.3 115 2-123 11-143 (409)
222 PRK04004 translation initiatio 99.7 3.6E-16 7.7E-21 114.1 13.1 112 2-121 5-136 (586)
223 COG0370 FeoB Fe2+ transport sy 99.7 2E-16 4.3E-21 114.5 11.6 117 1-126 1-126 (653)
224 cd01883 EF1_alpha Eukaryotic e 99.7 2.5E-16 5.4E-21 102.7 10.7 112 5-121 1-150 (219)
225 PRK12736 elongation factor Tu; 99.7 3.2E-16 6.9E-21 110.0 11.9 115 2-123 11-143 (394)
226 PRK13351 elongation factor G; 99.7 1.5E-16 3.1E-21 118.4 10.8 114 3-123 8-140 (687)
227 TIGR00437 feoB ferrous iron tr 99.7 1.4E-16 3.1E-21 116.4 10.4 107 10-125 1-116 (591)
228 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-16 3.5E-21 102.0 9.2 111 3-122 1-121 (197)
229 PRK12735 elongation factor Tu; 99.7 5.6E-16 1.2E-20 108.8 12.4 116 2-122 11-142 (396)
230 TIGR00484 EF-G translation elo 99.7 7.7E-16 1.7E-20 114.6 13.4 112 5-123 12-142 (689)
231 TIGR00503 prfC peptide chain r 99.7 3.8E-16 8.2E-21 112.8 11.3 115 3-122 11-146 (527)
232 TIGR00485 EF-Tu translation el 99.7 6.2E-16 1.3E-20 108.6 12.0 115 2-123 11-143 (394)
233 cd00066 G-alpha G protein alph 99.7 2.9E-16 6.4E-21 107.3 10.1 74 50-123 160-243 (317)
234 PLN03126 Elongation factor Tu; 99.7 6E-16 1.3E-20 110.5 11.9 117 2-123 80-212 (478)
235 TIGR03680 eif2g_arch translati 99.7 6.2E-16 1.3E-20 108.9 11.1 120 1-123 2-149 (406)
236 PLN03127 Elongation factor Tu; 99.7 1.4E-15 3E-20 108.1 12.2 115 2-123 60-192 (447)
237 cd01876 YihA_EngB The YihA (En 99.7 3.2E-15 7E-20 92.9 11.4 109 5-123 1-125 (170)
238 PRK12739 elongation factor G; 99.7 3.6E-15 7.7E-20 111.0 13.1 113 4-123 9-140 (691)
239 KOG1489|consensus 99.7 7.7E-16 1.7E-20 102.9 8.6 117 5-122 198-326 (366)
240 cd01853 Toc34_like Toc34-like 99.6 8.6E-15 1.9E-19 97.0 13.0 120 2-125 30-166 (249)
241 COG0218 Predicted GTPase [Gene 99.6 2.7E-15 5.8E-20 94.8 9.7 113 4-124 25-151 (200)
242 PRK00049 elongation factor Tu; 99.6 5.2E-15 1.1E-19 104.0 12.2 114 2-122 11-142 (396)
243 smart00275 G_alpha G protein a 99.6 1.4E-15 3E-20 104.9 9.0 73 51-123 184-266 (342)
244 cd04165 GTPBP1_like GTPBP1-lik 99.6 6.5E-15 1.4E-19 96.3 11.5 112 5-123 1-153 (224)
245 PRK05124 cysN sulfate adenylyl 99.6 5.8E-15 1.3E-19 105.7 12.1 117 2-122 26-174 (474)
246 TIGR02034 CysN sulfate adenyly 99.6 3.4E-15 7.3E-20 105.2 10.8 113 4-122 1-147 (406)
247 PRK00007 elongation factor G; 99.6 9.3E-15 2E-19 108.8 13.5 113 4-123 11-142 (693)
248 PRK04000 translation initiatio 99.6 4E-15 8.6E-20 105.0 10.9 118 2-123 8-154 (411)
249 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2.2E-14 4.8E-19 96.9 13.5 118 2-123 37-168 (313)
250 KOG1423|consensus 99.6 3.1E-15 6.8E-20 99.7 9.2 118 3-124 72-201 (379)
251 COG3596 Predicted GTPase [Gene 99.6 2.3E-15 5E-20 99.0 8.4 117 2-123 38-163 (296)
252 TIGR00490 aEF-2 translation el 99.6 3.3E-15 7.2E-20 111.6 9.8 114 4-122 20-152 (720)
253 PRK05506 bifunctional sulfate 99.6 9.4E-15 2E-19 107.9 11.6 115 2-122 23-171 (632)
254 PF10662 PduV-EutP: Ethanolami 99.6 5.4E-15 1.2E-19 89.5 8.4 96 5-121 3-102 (143)
255 PF04548 AIG1: AIG1 family; I 99.6 2.3E-14 4.9E-19 93.1 11.8 117 4-125 1-133 (212)
256 KOG0082|consensus 99.6 1.6E-14 3.5E-19 98.7 11.0 82 41-124 187-278 (354)
257 PRK10512 selenocysteinyl-tRNA- 99.6 2.4E-14 5.3E-19 105.1 12.3 112 5-123 2-119 (614)
258 KOG1191|consensus 99.6 1.7E-14 3.7E-19 101.2 10.8 119 3-123 268-404 (531)
259 COG2262 HflX GTPases [General 99.6 5E-14 1.1E-18 97.2 12.8 116 4-123 193-319 (411)
260 KOG0072|consensus 99.6 2.6E-15 5.6E-20 89.9 5.7 117 2-122 17-133 (182)
261 PTZ00141 elongation factor 1- 99.6 3.7E-14 8E-19 100.9 11.8 116 2-121 6-158 (446)
262 PLN00043 elongation factor 1-a 99.6 3.6E-14 7.8E-19 101.0 11.6 115 2-121 6-158 (447)
263 KOG0090|consensus 99.6 2E-14 4.4E-19 91.3 9.1 115 4-122 39-159 (238)
264 PLN00116 translation elongatio 99.6 2.3E-14 4.9E-19 108.6 10.7 113 4-121 20-163 (843)
265 COG0536 Obg Predicted GTPase [ 99.6 4.1E-14 8.8E-19 95.6 10.2 116 6-122 162-289 (369)
266 PTZ00416 elongation factor 2; 99.5 5.6E-14 1.2E-18 106.4 10.2 112 5-121 21-157 (836)
267 PRK12740 elongation factor G; 99.5 1.8E-13 3.9E-18 101.8 12.2 108 9-123 1-127 (668)
268 KOG4423|consensus 99.5 8E-17 1.7E-21 100.1 -6.7 120 4-123 26-150 (229)
269 PRK07560 elongation factor EF- 99.5 1.9E-13 4.2E-18 102.4 9.7 112 5-121 22-152 (731)
270 COG5256 TEF1 Translation elong 99.5 2.4E-13 5.2E-18 93.9 8.6 120 2-123 6-160 (428)
271 PF00350 Dynamin_N: Dynamin fa 99.5 3.6E-12 7.7E-17 79.7 12.7 62 53-118 103-168 (168)
272 KOG3886|consensus 99.4 3.1E-13 6.7E-18 87.1 6.5 121 3-124 4-132 (295)
273 KOG0462|consensus 99.4 1.4E-12 3E-17 92.9 10.3 115 5-124 62-193 (650)
274 PF05049 IIGP: Interferon-indu 99.4 3.5E-13 7.7E-18 93.2 6.9 111 3-120 35-153 (376)
275 smart00010 small_GTPase Small 99.4 1.6E-12 3.5E-17 77.2 9.0 92 4-124 1-93 (124)
276 PF00735 Septin: Septin; Inte 99.4 8.3E-13 1.8E-17 88.9 8.3 118 3-126 4-160 (281)
277 cd01899 Ygr210 Ygr210 subfamil 99.4 6.1E-12 1.3E-16 86.1 11.3 81 6-86 1-111 (318)
278 COG0532 InfB Translation initi 99.4 4.5E-12 9.6E-17 90.0 10.6 117 3-124 5-123 (509)
279 PF00503 G-alpha: G-protein al 99.4 3.7E-12 7.9E-17 89.6 9.6 72 51-122 236-317 (389)
280 smart00053 DYNc Dynamin, GTPas 99.4 2.7E-11 5.8E-16 79.8 13.0 69 51-123 125-207 (240)
281 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.6E-11 3.5E-16 80.4 11.8 108 3-122 39-147 (225)
282 COG0480 FusA Translation elong 99.4 7.7E-12 1.7E-16 92.7 11.2 114 4-123 11-143 (697)
283 PRK09602 translation-associate 99.4 1.4E-11 3.1E-16 86.6 12.0 82 4-85 2-113 (396)
284 PTZ00258 GTP-binding protein; 99.4 9.1E-12 2E-16 87.0 10.8 83 3-85 21-126 (390)
285 TIGR00993 3a0901s04IAP86 chlor 99.4 2.5E-11 5.3E-16 88.9 12.6 119 3-123 118-251 (763)
286 PTZ00327 eukaryotic translatio 99.4 7.2E-12 1.6E-16 89.4 9.8 117 2-122 33-185 (460)
287 KOG1490|consensus 99.4 1.9E-12 4.1E-17 91.4 6.2 118 5-126 170-299 (620)
288 COG0481 LepA Membrane GTPase L 99.3 7.1E-12 1.5E-16 88.2 8.7 114 5-123 11-143 (603)
289 KOG1707|consensus 99.3 2.5E-11 5.5E-16 86.9 11.2 117 4-125 426-543 (625)
290 PRK09601 GTP-binding protein Y 99.3 1.5E-11 3.3E-16 85.1 9.6 82 4-85 3-107 (364)
291 COG1163 DRG Predicted GTPase [ 99.3 1.2E-11 2.5E-16 83.4 8.7 84 4-89 64-155 (365)
292 cd01900 YchF YchF subfamily. 99.3 1.5E-11 3.2E-16 82.5 8.0 80 6-85 1-103 (274)
293 COG4917 EutP Ethanolamine util 99.3 5.1E-12 1.1E-16 74.2 4.9 102 5-126 3-108 (148)
294 KOG0085|consensus 99.3 8.8E-13 1.9E-17 85.4 1.6 80 47-126 195-284 (359)
295 PRK09866 hypothetical protein; 99.3 2.4E-10 5.2E-15 83.6 13.8 68 52-122 231-303 (741)
296 COG4108 PrfC Peptide chain rel 99.3 4E-11 8.7E-16 83.7 9.0 118 4-126 13-151 (528)
297 KOG1145|consensus 99.2 1.8E-10 3.9E-15 82.4 11.1 112 4-123 154-268 (683)
298 PF03029 ATP_bind_1: Conserved 99.2 1.4E-11 3.1E-16 81.2 5.1 70 52-122 92-170 (238)
299 KOG1532|consensus 99.2 6.8E-12 1.5E-16 83.0 3.1 74 51-124 116-197 (366)
300 KOG0458|consensus 99.2 6.6E-11 1.4E-15 84.8 8.2 121 2-122 176-329 (603)
301 COG1217 TypA Predicted membran 99.2 1.6E-10 3.5E-15 81.3 9.1 116 5-125 7-137 (603)
302 COG2895 CysN GTPases - Sulfate 99.2 2.1E-10 4.5E-15 78.3 9.0 116 3-124 6-155 (431)
303 KOG0468|consensus 99.2 2.8E-10 6.2E-15 83.0 9.9 113 4-121 129-262 (971)
304 PRK13768 GTPase; Provisional 99.2 1.5E-11 3.3E-16 81.9 3.2 72 52-124 98-178 (253)
305 TIGR02836 spore_IV_A stage IV 99.2 8.5E-10 1.8E-14 77.3 11.7 114 3-120 17-192 (492)
306 PRK14845 translation initiatio 99.1 7.7E-10 1.7E-14 85.2 10.7 101 14-122 472-592 (1049)
307 COG5019 CDC3 Septin family pro 99.1 5.9E-10 1.3E-14 76.4 8.8 118 3-125 23-179 (373)
308 KOG2655|consensus 99.1 5.9E-10 1.3E-14 76.7 8.4 119 3-126 21-176 (366)
309 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 3.7E-10 8.1E-15 68.9 6.6 54 5-61 85-138 (141)
310 cd01858 NGP_1 NGP-1. Autoanti 99.1 7.9E-10 1.7E-14 68.6 6.9 53 3-60 102-156 (157)
311 PF05783 DLIC: Dynein light in 99.0 8.7E-09 1.9E-13 73.9 12.2 94 3-99 25-126 (472)
312 KOG1144|consensus 99.0 1.5E-09 3.3E-14 80.2 7.8 111 3-121 475-605 (1064)
313 COG0012 Predicted GTPase, prob 99.0 1.3E-09 2.7E-14 75.1 7.0 84 3-86 2-109 (372)
314 cd04178 Nucleostemin_like Nucl 99.0 1.4E-09 3.1E-14 68.5 6.7 52 4-60 118-171 (172)
315 KOG0461|consensus 99.0 4.9E-09 1.1E-13 71.8 9.6 116 3-124 7-138 (522)
316 TIGR00092 GTP-binding protein 99.0 4.6E-09 1E-13 73.0 9.2 82 4-85 3-108 (368)
317 KOG3905|consensus 99.0 2.2E-08 4.8E-13 68.1 11.0 96 3-100 52-154 (473)
318 KOG1486|consensus 98.9 1.4E-08 3E-13 66.9 9.2 88 4-93 63-158 (364)
319 COG0050 TufB GTPases - transla 98.9 7E-09 1.5E-13 69.6 7.9 117 2-125 11-145 (394)
320 KOG0099|consensus 98.9 4.4E-09 9.6E-14 69.5 6.8 75 50-124 201-285 (379)
321 cd01856 YlqF YlqF. Proteins o 98.9 5.4E-09 1.2E-13 65.8 6.8 55 4-61 116-170 (171)
322 TIGR03596 GTPase_YlqF ribosome 98.9 7.8E-09 1.7E-13 69.8 7.3 54 3-61 118-173 (276)
323 KOG1547|consensus 98.9 1.8E-08 3.8E-13 65.9 8.4 115 3-122 46-198 (336)
324 COG1618 Predicted nucleotide k 98.9 7.6E-08 1.7E-12 59.4 10.3 113 3-121 5-143 (179)
325 KOG2486|consensus 98.9 8.3E-09 1.8E-13 68.6 6.6 113 3-122 136-262 (320)
326 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.4E-08 3E-13 69.0 7.6 57 3-62 121-177 (287)
327 cd01849 YlqF_related_GTPase Yl 98.9 1.4E-08 3E-13 62.9 7.0 53 3-60 100-154 (155)
328 KOG3887|consensus 98.9 7.1E-09 1.5E-13 67.9 5.6 116 4-123 28-150 (347)
329 KOG1954|consensus 98.8 4E-08 8.7E-13 67.9 9.0 118 4-125 59-228 (532)
330 KOG1491|consensus 98.8 1.1E-08 2.4E-13 69.7 5.8 85 2-86 19-126 (391)
331 cd01855 YqeH YqeH. YqeH is an 98.8 1.4E-08 3E-13 64.9 5.8 23 4-26 128-150 (190)
332 COG1161 Predicted GTPases [Gen 98.8 1.5E-08 3.3E-13 69.7 6.3 57 3-62 132-188 (322)
333 cd01859 MJ1464 MJ1464. This f 98.8 3E-08 6.4E-13 61.4 7.0 55 3-60 101-155 (156)
334 PF03193 DUF258: Protein of un 98.8 9E-09 1.9E-13 63.9 4.0 23 4-26 36-58 (161)
335 KOG0467|consensus 98.8 3.7E-08 8.1E-13 73.0 7.3 111 5-120 11-136 (887)
336 TIGR03348 VI_IcmF type VI secr 98.7 1.2E-07 2.6E-12 74.8 10.2 112 6-122 114-257 (1169)
337 KOG0448|consensus 98.7 2.7E-07 5.9E-12 67.9 11.2 66 53-123 208-276 (749)
338 TIGR00157 ribosome small subun 98.7 1.5E-08 3.2E-13 67.3 4.5 60 62-125 24-84 (245)
339 cd01851 GBP Guanylate-binding 98.7 1.1E-06 2.3E-11 57.8 12.1 83 4-86 8-103 (224)
340 PRK09435 membrane ATPase/prote 98.7 1.1E-07 2.3E-12 65.7 7.0 61 51-123 149-209 (332)
341 KOG0705|consensus 98.7 2.1E-08 4.6E-13 72.1 3.5 114 1-120 28-141 (749)
342 PRK12288 GTPase RsgA; Reviewed 98.7 4E-08 8.7E-13 68.2 4.8 22 5-26 207-228 (347)
343 TIGR00750 lao LAO/AO transport 98.6 3.9E-07 8.5E-12 62.3 9.1 61 51-123 127-187 (300)
344 KOG0464|consensus 98.6 4.4E-09 9.5E-14 73.7 -0.4 113 5-122 39-168 (753)
345 COG3276 SelB Selenocysteine-sp 98.6 3.8E-07 8.3E-12 64.1 8.9 112 6-123 3-118 (447)
346 PRK12289 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 65.7 6.2 22 5-26 174-195 (352)
347 TIGR00157 ribosome small subun 98.5 2.3E-07 5E-12 61.7 5.8 23 4-26 121-143 (245)
348 cd03112 CobW_like The function 98.5 1.8E-06 4E-11 53.7 9.4 64 50-120 86-158 (158)
349 KOG3859|consensus 98.5 8.4E-07 1.8E-11 59.4 8.1 57 4-60 43-104 (406)
350 cd01854 YjeQ_engC YjeQ/EngC. 98.5 1.4E-07 3.1E-12 64.0 4.2 23 4-26 162-184 (287)
351 TIGR03597 GTPase_YqeH ribosome 98.5 4.2E-07 9E-12 63.6 6.0 55 4-63 155-216 (360)
352 COG1162 Predicted GTPases [Gen 98.5 4.3E-07 9.4E-12 61.4 5.7 58 5-65 166-230 (301)
353 KOG0410|consensus 98.5 4.8E-07 1E-11 61.7 5.8 114 4-122 179-308 (410)
354 KOG0465|consensus 98.5 8.4E-08 1.8E-12 69.7 2.3 114 6-124 42-172 (721)
355 PRK13796 GTPase YqeH; Provisio 98.4 4.2E-07 9E-12 63.7 5.4 54 4-62 161-221 (365)
356 PRK00098 GTPase RsgA; Reviewed 98.4 3.1E-07 6.8E-12 62.7 4.5 24 3-26 164-187 (298)
357 TIGR01425 SRP54_euk signal rec 98.4 2.9E-06 6.4E-11 60.4 9.0 66 50-122 182-253 (429)
358 KOG0460|consensus 98.4 1.5E-06 3.3E-11 59.7 7.1 119 2-124 53-186 (449)
359 KOG1424|consensus 98.3 1.1E-06 2.3E-11 63.1 5.0 55 4-61 315-369 (562)
360 KOG1143|consensus 98.3 7.4E-07 1.6E-11 62.0 3.8 117 3-124 167-319 (591)
361 COG5257 GCD11 Translation init 98.3 3.3E-06 7.1E-11 57.7 6.2 118 2-123 9-155 (415)
362 COG5192 BMS1 GTP-binding prote 98.2 1.6E-05 3.4E-10 58.3 9.5 108 3-122 69-177 (1077)
363 PRK14722 flhF flagellar biosyn 98.2 2.1E-05 4.5E-10 55.3 10.0 21 5-25 139-159 (374)
364 COG5258 GTPBP1 GTPase [General 98.2 1.3E-05 2.9E-10 56.0 8.8 117 3-124 117-271 (527)
365 KOG0447|consensus 98.2 2.7E-05 5.9E-10 56.9 10.2 68 53-123 414-494 (980)
366 PF06858 NOG1: Nucleolar GTP-b 98.2 9E-06 1.9E-10 41.6 5.1 45 73-119 12-58 (58)
367 TIGR00064 ftsY signal recognit 98.2 3.3E-05 7.1E-10 52.2 9.1 64 51-122 155-231 (272)
368 PRK10416 signal recognition pa 98.2 1.9E-05 4E-10 54.5 8.1 22 4-25 115-136 (318)
369 KOG1534|consensus 98.1 5.2E-06 1.1E-10 53.6 4.7 25 1-25 1-25 (273)
370 PRK14974 cell division protein 98.1 5.3E-06 1.1E-10 57.5 4.8 64 51-122 223-293 (336)
371 PF05621 TniB: Bacterial TniB 98.1 4.9E-05 1.1E-09 51.7 8.8 101 4-117 62-189 (302)
372 cd03115 SRP The signal recogni 98.1 3.3E-05 7.1E-10 48.6 7.6 66 51-123 83-154 (173)
373 PF00448 SRP54: SRP54-type pro 98.1 3.5E-06 7.7E-11 54.2 3.1 20 5-24 3-22 (196)
374 PF13207 AAA_17: AAA domain; P 98.0 4.8E-06 1E-10 49.2 2.9 22 5-26 1-22 (121)
375 KOG4273|consensus 98.0 1.9E-05 4.2E-10 52.4 5.9 116 4-122 5-123 (418)
376 PRK12727 flagellar biosynthesi 98.0 4.5E-05 9.8E-10 55.7 8.2 21 5-25 352-372 (559)
377 PRK13695 putative NTPase; Prov 98.0 4.3E-05 9.3E-10 48.2 7.3 22 4-25 1-22 (174)
378 PRK08118 topology modulation p 98.0 5.6E-06 1.2E-10 52.0 3.2 21 5-25 3-23 (167)
379 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.3E-05 2.9E-10 54.5 5.1 52 68-123 72-124 (287)
380 COG0563 Adk Adenylate kinase a 98.0 5.9E-06 1.3E-10 52.4 3.1 22 5-26 2-23 (178)
381 cd01855 YqeH YqeH. YqeH is an 98.0 1E-05 2.2E-10 51.7 4.2 54 62-123 22-76 (190)
382 PRK07261 topology modulation p 98.0 6.7E-06 1.4E-10 51.8 3.2 21 5-25 2-22 (171)
383 PF03266 NTPase_1: NTPase; In 98.0 1.6E-05 3.4E-10 50.0 4.7 52 5-58 1-52 (168)
384 cd01859 MJ1464 MJ1464. This f 98.0 1.1E-05 2.3E-10 49.9 3.8 54 65-123 3-56 (156)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 9.7E-06 2.1E-10 49.4 3.6 51 69-124 6-58 (141)
386 cd00009 AAA The AAA+ (ATPases 98.0 0.00013 2.8E-09 43.8 8.5 24 4-27 20-43 (151)
387 PRK14530 adenylate kinase; Pro 98.0 8.3E-06 1.8E-10 53.2 3.3 25 1-25 1-25 (215)
388 COG1703 ArgK Putative periplas 98.0 9.4E-05 2E-09 50.2 8.2 58 53-122 146-203 (323)
389 COG1419 FlhF Flagellar GTP-bin 97.9 8.4E-05 1.8E-09 52.4 8.0 21 5-25 205-225 (407)
390 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00025 5.5E-09 45.0 9.6 22 5-26 27-48 (177)
391 KOG1487|consensus 97.9 2.8E-05 6E-10 51.9 5.3 88 5-94 61-156 (358)
392 COG1116 TauB ABC-type nitrate/ 97.9 9.3E-06 2E-10 53.6 3.0 21 5-25 31-51 (248)
393 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00017 3.6E-09 40.4 7.9 97 6-116 2-99 (99)
394 KOG2484|consensus 97.9 1.5E-05 3.2E-10 55.8 4.0 54 3-60 252-306 (435)
395 KOG0463|consensus 97.9 2.8E-05 6.2E-10 54.4 4.9 68 52-124 220-289 (641)
396 PF13555 AAA_29: P-loop contai 97.9 1.8E-05 3.8E-10 41.4 3.0 21 5-25 25-45 (62)
397 PRK12289 GTPase RsgA; Reviewed 97.9 3.2E-05 7E-10 54.0 5.2 51 69-123 84-135 (352)
398 PF13671 AAA_33: AAA domain; P 97.9 1.3E-05 2.7E-10 48.7 2.7 20 6-25 2-21 (143)
399 cd02042 ParA ParA and ParB of 97.9 0.0002 4.3E-09 41.2 7.7 82 6-98 2-84 (104)
400 PRK12726 flagellar biosynthesi 97.9 0.00019 4.1E-09 50.7 8.6 21 5-25 208-228 (407)
401 KOG0459|consensus 97.9 8.9E-06 1.9E-10 57.1 2.1 121 2-122 78-231 (501)
402 PRK00771 signal recognition pa 97.8 4.1E-05 8.8E-10 55.0 5.4 63 52-122 177-246 (437)
403 COG3523 IcmF Type VI protein s 97.8 0.00014 3E-09 57.6 8.4 112 6-122 128-270 (1188)
404 PRK00098 GTPase RsgA; Reviewed 97.8 3.1E-05 6.7E-10 53.0 4.2 48 71-122 77-125 (298)
405 PRK14723 flhF flagellar biosyn 97.8 9.5E-05 2E-09 56.2 7.0 21 5-25 187-207 (767)
406 PRK08233 hypothetical protein; 97.8 2.8E-05 6.1E-10 49.1 3.6 25 1-25 1-25 (182)
407 KOG2485|consensus 97.8 2.6E-05 5.7E-10 53.0 3.5 58 2-60 142-205 (335)
408 COG3640 CooC CO dehydrogenase 97.8 0.00016 3.5E-09 47.5 6.9 46 71-121 152-198 (255)
409 cd02038 FleN-like FleN is a me 97.8 0.00024 5.3E-09 43.2 7.5 103 8-121 5-110 (139)
410 KOG2423|consensus 97.8 9.8E-06 2.1E-10 56.9 1.3 58 2-62 306-363 (572)
411 KOG0057|consensus 97.8 7.9E-05 1.7E-09 54.3 5.9 24 2-25 377-400 (591)
412 COG1117 PstB ABC-type phosphat 97.8 8.5E-05 1.8E-09 48.3 5.4 20 6-25 36-55 (253)
413 COG3845 ABC-type uncharacteriz 97.8 0.00031 6.7E-09 50.6 8.6 56 60-120 144-202 (501)
414 cd02019 NK Nucleoside/nucleoti 97.8 3.3E-05 7.2E-10 41.3 3.0 21 6-26 2-22 (69)
415 COG1136 SalX ABC-type antimicr 97.7 3.8E-05 8.2E-10 50.3 3.7 21 5-25 33-53 (226)
416 cd01858 NGP_1 NGP-1. Autoanti 97.7 3.7E-05 7.9E-10 47.7 3.4 49 71-124 5-55 (157)
417 COG4619 ABC-type uncharacteriz 97.7 0.0001 2.2E-09 46.4 5.3 22 5-26 31-52 (223)
418 PF00005 ABC_tran: ABC transpo 97.7 3E-05 6.5E-10 46.8 2.9 22 5-26 13-34 (137)
419 PRK06217 hypothetical protein; 97.7 3.4E-05 7.4E-10 49.1 3.2 22 4-25 2-23 (183)
420 KOG0469|consensus 97.7 9.4E-05 2E-09 53.7 5.6 67 49-120 96-162 (842)
421 COG3839 MalK ABC-type sugar tr 97.7 3.1E-05 6.8E-10 53.6 3.0 20 6-25 32-51 (338)
422 PF13521 AAA_28: AAA domain; P 97.7 2.1E-05 4.6E-10 49.0 2.0 22 5-26 1-22 (163)
423 cd00071 GMPK Guanosine monopho 97.7 3.9E-05 8.4E-10 46.6 3.0 21 6-26 2-22 (137)
424 PRK10078 ribose 1,5-bisphospho 97.7 3.8E-05 8.2E-10 49.0 3.0 22 5-26 4-25 (186)
425 TIGR02322 phosphon_PhnN phosph 97.7 3.8E-05 8.3E-10 48.5 3.0 21 5-25 3-23 (179)
426 COG1126 GlnQ ABC-type polar am 97.7 5.4E-05 1.2E-09 49.2 3.6 22 5-26 30-51 (240)
427 PRK14531 adenylate kinase; Pro 97.7 4.7E-05 1E-09 48.4 3.4 21 5-25 4-24 (183)
428 PF00004 AAA: ATPase family as 97.7 4.3E-05 9.4E-10 45.5 3.0 21 6-26 1-21 (132)
429 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00058 1.3E-08 41.8 7.9 65 5-80 28-94 (144)
430 cd03111 CpaE_like This protein 97.7 0.00037 8E-09 40.5 6.7 98 10-117 7-106 (106)
431 COG3840 ThiQ ABC-type thiamine 97.7 4.8E-05 1E-09 48.4 3.0 21 5-25 27-47 (231)
432 PRK03839 putative kinase; Prov 97.7 5.1E-05 1.1E-09 48.1 3.2 21 5-25 2-22 (180)
433 PRK01889 GTPase RsgA; Reviewed 97.6 4.8E-05 1E-09 53.3 3.3 60 5-64 197-260 (356)
434 TIGR03263 guanyl_kin guanylate 97.6 5E-05 1.1E-09 48.0 3.1 22 5-26 3-24 (180)
435 PRK05480 uridine/cytidine kina 97.6 6.4E-05 1.4E-09 48.7 3.5 24 2-25 5-28 (209)
436 cd03238 ABC_UvrA The excision 97.6 6.2E-05 1.3E-09 47.7 3.3 22 4-25 22-43 (176)
437 TIGR03597 GTPase_YqeH ribosome 97.6 8.1E-05 1.7E-09 52.3 4.1 56 61-123 50-105 (360)
438 smart00382 AAA ATPases associa 97.6 6.5E-05 1.4E-09 44.7 3.2 24 4-27 3-26 (148)
439 TIGR00101 ureG urease accessor 97.6 6.6E-05 1.4E-09 48.5 3.4 23 3-25 1-23 (199)
440 cd00820 PEPCK_HprK Phosphoenol 97.6 6E-05 1.3E-09 43.8 2.8 20 5-24 17-36 (107)
441 PRK12288 GTPase RsgA; Reviewed 97.6 0.00019 4.2E-09 50.1 5.8 48 72-123 118-165 (347)
442 TIGR00235 udk uridine kinase. 97.6 7.7E-05 1.7E-09 48.4 3.6 23 3-25 6-28 (207)
443 cd02023 UMPK Uridine monophosp 97.6 6.1E-05 1.3E-09 48.4 3.0 20 6-25 2-21 (198)
444 PF03215 Rad17: Rad17 cell cyc 97.6 0.00043 9.3E-09 50.8 7.5 20 6-25 48-67 (519)
445 PRK14737 gmk guanylate kinase; 97.6 8.3E-05 1.8E-09 47.5 3.4 23 4-26 5-27 (186)
446 PRK04195 replication factor C 97.6 0.00053 1.1E-08 50.0 7.9 22 5-26 41-62 (482)
447 KOG1970|consensus 97.6 0.00053 1.2E-08 50.2 7.7 45 76-120 195-239 (634)
448 PRK13900 type IV secretion sys 97.6 0.00072 1.6E-08 47.1 8.2 24 3-26 160-183 (332)
449 cd03216 ABC_Carb_Monos_I This 97.6 0.00076 1.6E-08 42.1 7.7 22 5-26 28-49 (163)
450 PRK13949 shikimate kinase; Pro 97.6 7.8E-05 1.7E-09 46.9 3.2 21 5-25 3-23 (169)
451 PF13238 AAA_18: AAA domain; P 97.6 6.2E-05 1.3E-09 44.6 2.6 21 6-26 1-21 (129)
452 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 8.2E-05 1.8E-09 48.5 3.3 22 5-26 32-53 (218)
453 cd03264 ABC_drug_resistance_li 97.6 7.3E-05 1.6E-09 48.5 3.0 22 5-26 27-48 (211)
454 KOG3347|consensus 97.6 6E-05 1.3E-09 46.3 2.4 24 2-25 6-29 (176)
455 COG1120 FepC ABC-type cobalami 97.6 7.4E-05 1.6E-09 50.0 3.0 20 6-25 31-50 (258)
456 cd01130 VirB11-like_ATPase Typ 97.6 8.7E-05 1.9E-09 47.4 3.2 23 4-26 26-48 (186)
457 PTZ00301 uridine kinase; Provi 97.6 9.7E-05 2.1E-09 48.1 3.5 24 1-24 1-24 (210)
458 PRK05057 aroK shikimate kinase 97.6 8.9E-05 1.9E-09 46.8 3.2 23 3-25 4-26 (172)
459 PF03205 MobB: Molybdopterin g 97.6 8E-05 1.7E-09 45.5 2.9 21 5-25 2-22 (140)
460 KOG0066|consensus 97.6 0.00091 2E-08 48.2 8.5 23 4-26 614-636 (807)
461 TIGR01360 aden_kin_iso1 adenyl 97.5 8E-05 1.7E-09 47.2 3.0 21 4-24 4-24 (188)
462 cd03225 ABC_cobalt_CbiO_domain 97.5 9.3E-05 2E-09 48.0 3.3 22 5-26 29-50 (211)
463 PF04665 Pox_A32: Poxvirus A32 97.5 9.2E-05 2E-09 49.1 3.2 23 3-25 13-35 (241)
464 TIGR00960 3a0501s02 Type II (G 97.5 9.4E-05 2E-09 48.2 3.2 22 5-26 31-52 (216)
465 cd03261 ABC_Org_Solvent_Resist 97.5 9.6E-05 2.1E-09 48.7 3.3 22 5-26 28-49 (235)
466 cd03226 ABC_cobalt_CbiO_domain 97.5 0.0001 2.2E-09 47.7 3.2 22 5-26 28-49 (205)
467 TIGR00959 ffh signal recogniti 97.5 0.0002 4.4E-09 51.3 5.0 65 51-122 183-253 (428)
468 PRK14532 adenylate kinase; Pro 97.5 9.8E-05 2.1E-09 47.1 3.1 21 5-25 2-22 (188)
469 PRK10867 signal recognition pa 97.5 0.0024 5.3E-08 46.0 10.3 21 4-24 101-121 (433)
470 cd01849 YlqF_related_GTPase Yl 97.5 0.00011 2.4E-09 45.4 3.2 44 76-123 1-44 (155)
471 PF07728 AAA_5: AAA domain (dy 97.5 8.5E-05 1.8E-09 45.0 2.6 21 5-25 1-21 (139)
472 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00036 7.8E-09 42.2 5.2 23 4-26 23-45 (133)
473 TIGR01166 cbiO cobalt transpor 97.5 9.9E-05 2.1E-09 47.1 3.0 22 5-26 20-41 (190)
474 TIGR02673 FtsE cell division A 97.5 0.00011 2.4E-09 47.7 3.3 22 5-26 30-51 (214)
475 KOG0780|consensus 97.5 0.00023 4.9E-09 50.1 4.8 52 48-99 181-238 (483)
476 cd03292 ABC_FtsE_transporter F 97.5 0.00011 2.4E-09 47.7 3.3 22 5-26 29-50 (214)
477 cd01428 ADK Adenylate kinase ( 97.5 8.5E-05 1.8E-09 47.4 2.7 21 5-25 1-21 (194)
478 TIGR02315 ABC_phnC phosphonate 97.5 0.00011 2.4E-09 48.7 3.3 22 5-26 30-51 (243)
479 PHA00729 NTP-binding motif con 97.5 0.00013 2.7E-09 48.0 3.4 23 4-26 18-40 (226)
480 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.5E-09 47.9 3.3 22 5-26 28-49 (220)
481 cd02025 PanK Pantothenate kina 97.5 9.3E-05 2E-09 48.5 2.8 20 6-25 2-21 (220)
482 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00012 2.5E-09 47.9 3.3 22 5-26 32-53 (220)
483 PRK13851 type IV secretion sys 97.5 0.0014 3E-08 45.9 8.7 24 3-26 162-185 (344)
484 cd03260 ABC_PstB_phosphate_tra 97.5 0.00012 2.5E-09 48.1 3.3 23 5-27 28-50 (227)
485 cd01131 PilT Pilus retraction 97.5 0.0001 2.3E-09 47.5 3.0 21 6-26 4-24 (198)
486 TIGR03608 L_ocin_972_ABC putat 97.5 0.00012 2.6E-09 47.3 3.3 22 5-26 26-47 (206)
487 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.0001 2.3E-09 46.6 3.0 20 6-25 2-21 (183)
488 PRK14738 gmk guanylate kinase; 97.5 0.00013 2.8E-09 47.3 3.4 22 4-25 14-35 (206)
489 TIGR01313 therm_gnt_kin carboh 97.5 8.4E-05 1.8E-09 46.2 2.5 20 6-25 1-20 (163)
490 cd03269 ABC_putative_ATPase Th 97.5 0.00012 2.6E-09 47.4 3.3 22 5-26 28-49 (210)
491 PRK00300 gmk guanylate kinase; 97.5 0.00013 2.7E-09 47.1 3.3 23 4-26 6-28 (205)
492 cd03224 ABC_TM1139_LivF_branch 97.5 0.00012 2.5E-09 47.9 3.2 22 5-26 28-49 (222)
493 PRK02496 adk adenylate kinase; 97.5 0.00013 2.8E-09 46.3 3.3 22 4-25 2-23 (184)
494 PTZ00088 adenylate kinase 1; P 97.5 0.00013 2.8E-09 48.2 3.4 23 3-25 6-28 (229)
495 cd03259 ABC_Carb_Solutes_like 97.5 0.00012 2.7E-09 47.5 3.3 22 5-26 28-49 (213)
496 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00012 2.7E-09 47.4 3.3 22 5-26 28-49 (213)
497 COG0523 Putative GTPases (G3E 97.5 0.0016 3.5E-08 45.1 8.8 20 6-25 4-23 (323)
498 COG3842 PotA ABC-type spermidi 97.5 0.0001 2.3E-09 51.3 3.0 20 6-25 34-53 (352)
499 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00013 2.7E-09 47.7 3.3 22 5-26 33-54 (221)
500 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00011 2.4E-09 48.9 3.0 21 5-25 32-52 (254)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.4e-34 Score=179.68 Aligned_cols=124 Identities=44% Similarity=0.751 Sum_probs=116.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||..|+..+.|++.+..|.. ++....+..+++.+++++|||.|+++|+.....+|+++|++|+|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v 88 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV 88 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence 37999999999999999999999999999888875 77778888899999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||+++.+||+++..|+.++.. ....++|.++|+||+|+.+.+.|+
T Consensus 89 yDiT~~~SF~~v~~Wi~Ei~~-~~~~~v~~lLVGNK~Dl~~~~~v~ 133 (205)
T KOG0084|consen 89 YDITKQESFNNVKRWIQEIDR-YASENVPKLLVGNKCDLTEKRVVS 133 (205)
T ss_pred EEcccHHHhhhHHHHHHHhhh-hccCCCCeEEEeeccccHhheecC
Confidence 999999999999999999999 456679999999999999998876
No 2
>KOG0092|consensus
Probab=100.00 E-value=3e-32 Score=168.80 Aligned_cols=125 Identities=38% Similarity=0.660 Sum_probs=115.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+|++++|..+||||||+.|+..+.|.+...+|.. .+..+.+...+..++|.+|||.|+++|....+++|++++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 578999999999999999999999999887666665 6778889999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|||+++.+||..+..|+.++... ..+++-+.++|||+||.+.|+|+
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~ 129 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQ-ASPNIVIALVGNKADLLERREVE 129 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhh-CCCCeEEEEecchhhhhhccccc
Confidence 99999999999999999999994 44889999999999999988875
No 3
>KOG0094|consensus
Probab=100.00 E-value=4.4e-32 Score=168.42 Aligned_cols=127 Identities=35% Similarity=0.621 Sum_probs=119.6
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
++.+|++++|+.+||||||++|++.+.+...|..|.. ++...++.+.+..+.+++|||.|++.|+.+.+.+++++.+++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3568999999999999999999999999988988885 888899999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
+|||+++..||++..+|+..+...+...++-+++||||.||.+.|+++
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS 147 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh
Confidence 999999999999999999999997777778999999999999999886
No 4
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=6.6e-31 Score=163.63 Aligned_cols=124 Identities=92% Similarity=1.387 Sum_probs=111.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|++++|++|||||||++++..+.+...+.++..+.+...+..++..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999888777777777777777888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++|+.+..|+..+.......+.|+++|+||+|+.+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 124 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVV 124 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee
Confidence 99999999999999998887656678999999999999765554
No 5
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=5.9e-31 Score=168.22 Aligned_cols=121 Identities=34% Similarity=0.638 Sum_probs=107.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+|++++|++|||||||+.++..+.+...+.+|..+.+...+..++..+.+.+||++|++.|...++.++++++++++
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 77899999999999999999999999988888888876666667788888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|||+++++||+++.. |...+.. ..++.|+++|+||.|+.+.
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~--~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCH--HCPNVPILLVGTKKDLRND 122 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEeChhhhcC
Confidence 999999999999974 6555554 2468999999999999754
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.98 E-value=8e-31 Score=168.63 Aligned_cols=123 Identities=37% Similarity=0.651 Sum_probs=108.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|+++|..|||||||++++..+.+...+.+|.. +.....+.+++..+.+.+||++|++.|...+..++++++++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999999988887777765 555667888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|+++++||+++..|+..+.. ....+.|+++|+||+|+.++++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-~~~~~~piilVgNK~DL~~~~~v~ 124 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREIS 124 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECcccccccccC
Confidence 99999999999998887665 344679999999999998777664
No 7
>PTZ00369 Ras-like protein; Provisional
Probab=99.98 E-value=1.1e-30 Score=166.77 Aligned_cols=126 Identities=65% Similarity=1.132 Sum_probs=113.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+++|++++|.+|||||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56799999999999999999999998887777777777677778888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++++|+.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i 128 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQV 128 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc
Confidence 9999999999999999998887656678999999999999766554
No 8
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.98 E-value=8.7e-31 Score=164.97 Aligned_cols=126 Identities=55% Similarity=0.955 Sum_probs=111.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|.+|||||||++++..+.+...+.++....+...+..++..+.+.+||+||++.+..++..+++.++++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 35899999999999999999999988877777777766667788888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||++++.||+.+..|+..+......+++|+++|+||+|+.+.++++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~ 126 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT 126 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC
Confidence 9999999999999888877765455789999999999998766654
No 9
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.98 E-value=1.4e-30 Score=162.62 Aligned_cols=124 Identities=95% Similarity=1.404 Sum_probs=111.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++||+++|.+|||||||++++..+.+.+.+.++....+...+..++..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 57999999999999999999998888777778877766777888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|+++..+|+.+..|+..+.......+.|+++|+||+|+.+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 124 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 124 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEE
Confidence 99999999999999999887556678999999999999876554
No 10
>KOG0098|consensus
Probab=99.97 E-value=7.1e-31 Score=161.97 Aligned_cols=124 Identities=37% Similarity=0.610 Sum_probs=115.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|+.|||||+|+.++....|.+.+..|.. +.-...+.+++.++++++|||.|++.|+.....+|+++.++|+|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 58999999999999999999999999998887764 77778889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||+.+++||..+..|+..+.+ ...++..+++++||+||...|.|+
T Consensus 86 ydit~r~sF~hL~~wL~D~rq-~~~~NmvImLiGNKsDL~~rR~Vs 130 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQ-HSNENMVIMLIGNKSDLEARREVS 130 (216)
T ss_pred EEccchhhHHHHHHHHHHHHH-hcCCCcEEEEEcchhhhhcccccc
Confidence 999999999999999999999 457889999999999999998886
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=2.4e-30 Score=164.16 Aligned_cols=118 Identities=30% Similarity=0.534 Sum_probs=106.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.+|++++|++|||||||++++..+.+...+.+|....+...+..++..+.+.+|||+|++.|...++.++++++++++||
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvy 84 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 84 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEE
Confidence 58999999999999999999999999888888887766777888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++.||+++ ..|+..+... .++.|+++|+||+|+.+
T Consensus 85 Dit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~ 123 (182)
T cd04172 85 DISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 123 (182)
T ss_pred ECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhc
Confidence 99999999997 6788777663 36799999999999964
No 12
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=4.2e-30 Score=160.23 Aligned_cols=123 Identities=71% Similarity=1.130 Sum_probs=109.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|++++|.+|||||||++++..+.+.+.+.++..+.....+..++..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999888877777776666777888888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|++++++|+++..|+..+.......++|+++|+||+|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~ 123 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE 123 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc
Confidence 9999999999999999888755557899999999999976544
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=2.9e-30 Score=163.01 Aligned_cols=119 Identities=30% Similarity=0.616 Sum_probs=107.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|.+|+|||+|+.++..+.+..++.+|..+.+...+..++..+.+.+||++|++.+...+..++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999998888888877667777788889999999999999999999999999999999999
Q ss_pred CCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 84 ITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 84 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+++++||+++ ..|+..+... .++.|+++|+||+|+.+++
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 82 LISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccCh
Confidence 9999999998 6788877653 3579999999999997653
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.8e-30 Score=163.44 Aligned_cols=118 Identities=29% Similarity=0.516 Sum_probs=105.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++||+++|++|||||||++++.++.+...+.+|....+...+..++..+.+.+||++|++.|....+.++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 47999999999999999999999988888888877666677788899999999999999999999999999999999999
Q ss_pred eCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+++++||+++ ..|+..+... .++.|+++|+||+|+.+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRT 119 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhc
Confidence 99999999996 6788777663 46899999999999964
No 15
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=7.3e-30 Score=162.76 Aligned_cols=123 Identities=28% Similarity=0.486 Sum_probs=107.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|..|||||||+.++..+.+...+.++.. +.....+..++..+.+.+||++|++.|..++..++++++++++|
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV 85 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV 85 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999877666655543 44456677788889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||++++.+|+++..|+..+... .++.|+++|+||+|+.+.++++
T Consensus 86 fD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~ 129 (189)
T cd04121 86 YDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVA 129 (189)
T ss_pred EECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCC
Confidence 9999999999999999998663 4689999999999998766654
No 16
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1e-29 Score=158.56 Aligned_cols=123 Identities=74% Similarity=1.251 Sum_probs=109.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|++|||||||++++.+..+...+.++..+........++..+.+.+||+||++.+...+..++++++++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777777777767777788888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++++++++.+..|+..+.......+.|+++|+||+|+.+++.+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~ 123 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVV 123 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceE
Confidence 9999999999999988877666668999999999999876544
No 17
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=1.5e-29 Score=157.61 Aligned_cols=125 Identities=61% Similarity=1.051 Sum_probs=110.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|++|+|||||++++.++.+...+.++..+........++..+.+.+||+||++.+...+..++++++++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 46899999999999999999999987777777777666666777888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+|+.+..|+..+.......+.|+++++||+|+.+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~ 125 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKV 125 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccccee
Confidence 999999999999999998887656678999999999999776544
No 18
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.4e-29 Score=158.48 Aligned_cols=123 Identities=37% Similarity=0.581 Sum_probs=106.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|++|||||||++++..+.+.+.+.++.. +.....+..++..+.+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999999888777666654 34345567788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+.. ...++.|+++|+||+|+.+++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iiiv~nK~Dl~~~~~~ 125 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLEAQRDV 125 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccCc
Confidence 999999999999999988766 34567999999999999876654
No 19
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1.1e-29 Score=165.31 Aligned_cols=119 Identities=25% Similarity=0.452 Sum_probs=105.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++||+++|.+|||||+|++++..+.++..+.+|....+...+..++..+.+.+||++|++.|...++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 47999999999999999999999999888888887777777888999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++++|+++..+|..... ...++.|+++|+||+|+.+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~-~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQ-EFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hhCCCCCEEEEEECccccc
Confidence 99999999999655554433 3457899999999999965
No 20
>KOG0078|consensus
Probab=99.97 E-value=4.8e-30 Score=161.33 Aligned_cols=124 Identities=40% Similarity=0.699 Sum_probs=115.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
-+|++++|++|||||+++.++..+.+...+..|.. ++...++..++..+.+++|||.|++.|..+...++++++++++|
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence 48999999999999999999999998887777764 77788889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||+++..||+++..|+..+.. .....+|.++||||+|+.++|+|+
T Consensus 92 yDitne~Sfeni~~W~~~I~e-~a~~~v~~~LvGNK~D~~~~R~V~ 136 (207)
T KOG0078|consen 92 YDITNEKSFENIRNWIKNIDE-HASDDVVKILVGNKCDLEEKRQVS 136 (207)
T ss_pred EEccchHHHHHHHHHHHHHHh-hCCCCCcEEEeecccccccccccc
Confidence 999999999999999999888 566699999999999999999886
No 21
>KOG0080|consensus
Probab=99.97 E-value=1.8e-30 Score=156.93 Aligned_cols=125 Identities=40% Similarity=0.607 Sum_probs=115.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|+|||+|+-++..+.+.+....|.. ++-.+.+.+++..+++.+|||.|++.|+...+.+|++++++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 38999999999999999999999998777655453 67778889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||++.+++|.++..|..++..+...+++-.++|+||+|...+|.|+
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~ 136 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVD 136 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccccc
Confidence 9999999999999999999999999999999999999998777764
No 22
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=1.3e-29 Score=160.05 Aligned_cols=118 Identities=31% Similarity=0.605 Sum_probs=103.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|.+|||||||++++..+.+...+.++....+...+..++..+.+.+||++|++.+...+..++++++++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 69999999999999999999999888888888876666677788888999999999999999999999999999999999
Q ss_pred CCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 84 ITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 84 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++++|+++.. |...+.. ..++.|+++|+||+|+.+.
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~--~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEECHhhhhC
Confidence 999999999975 6655544 2467999999999999654
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.3e-29 Score=164.54 Aligned_cols=119 Identities=24% Similarity=0.463 Sum_probs=106.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
..+||+++|++|||||+|++++..+.+...+.+|....+...+..++..+.+.+|||+|++.|....+.++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 35899999999999999999999999988888888766667788889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||+++++||+++ ..|+..+... .++.|+++|+||+|+.+
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~ 131 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRT 131 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccccc
Confidence 999999999985 7788877663 35789999999999964
No 24
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=3.4e-29 Score=155.51 Aligned_cols=120 Identities=65% Similarity=1.148 Sum_probs=108.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++||+++|++|||||||++++.++.+...+.++..+.+...+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999888777777777766777788888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++.+|+++..|+..+.......+.|+++|+||+|+.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999998888765567899999999999975
No 25
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.7e-29 Score=161.35 Aligned_cols=122 Identities=66% Similarity=1.073 Sum_probs=107.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
||+++|.+|||||||++++..+.+...+.++..+.+......++..+.+.+||+||++.+...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999988877777777766666777788888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCcee
Q psy784 85 TAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~v 126 (128)
++.++|+.+..|+..+..... ..+.|+++|+||+|+.+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v 124 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV 124 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc
Confidence 999999999999988876443 367999999999999766554
No 26
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=5.1e-29 Score=155.81 Aligned_cols=124 Identities=46% Similarity=0.873 Sum_probs=107.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.+||+++|++|||||||++++.++.+...+.++....+...+......+.+.+||+||++.+...+...++.++++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999888777777776666666777777888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++++..|+..+..... .+++|+++|+||+|+.+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v 126 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV 126 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCee
Confidence 99999999999999887766432 267999999999999775554
No 27
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.2e-29 Score=161.02 Aligned_cols=123 Identities=22% Similarity=0.386 Sum_probs=103.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC-----CcEEEEEEEeCCCccchhHhHHhhccCCcE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-----GQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 77 (128)
+||+++|.+|||||||++++.++.+.+.+.+|.. +.....+.+. +..+.+.+||++|++.+...+..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999888777766664 3333444443 567889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhhh------------------CCCCCcEEEEEecCCCCCCcee
Q psy784 78 FILVYSITAQSTFNDLSDLREQILRVK------------------DTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+++|||+++++||+++..|+..+.... ...++|+++|+||+|+.++|.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 999999999999999999999887632 1247899999999999877644
No 28
>KOG0087|consensus
Probab=99.97 E-value=4e-30 Score=161.42 Aligned_cols=125 Identities=34% Similarity=0.564 Sum_probs=115.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
-+|++++|++++|||-|+.|+..+.|..+..+|.. ++....+.++++.++.++|||.|++.|+.....+|+++.++++|
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllV 93 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 93 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEE
Confidence 37999999999999999999999998877767764 77788889999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceecC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVSG 128 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~~ 128 (128)
||++.+.+|+++..|+.+++. ...+++++++|+||+||.+.|.|.+
T Consensus 94 YDITr~~Tfenv~rWL~ELRd-had~nivimLvGNK~DL~~lraV~t 139 (222)
T KOG0087|consen 94 YDITRRQTFENVERWLKELRD-HADSNIVIMLVGNKSDLNHLRAVPT 139 (222)
T ss_pred EechhHHHHHHHHHHHHHHHh-cCCCCeEEEEeecchhhhhccccch
Confidence 999999999999999999999 6778999999999999998887753
No 29
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=3.7e-29 Score=157.81 Aligned_cols=118 Identities=31% Similarity=0.607 Sum_probs=103.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|++++|.+|||||||+.++..+.+...+.++..+.+...+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 47999999999999999999999988888888877666667778888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++++|+++. .|+..+.. ..++.|+++|+||+|+.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~--~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEeeChhhcc
Confidence 999999999996 46665554 245899999999999965
No 30
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=7.7e-29 Score=155.27 Aligned_cols=123 Identities=39% Similarity=0.703 Sum_probs=106.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+.+.+.++.. +.....+.+.+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999999999888777766665 34445677788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+... ...+.|+++|+||+|+.+.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~ 126 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVV 126 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCC
Confidence 9999999999999999888773 4467999999999999875544
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.3e-29 Score=159.96 Aligned_cols=122 Identities=33% Similarity=0.606 Sum_probs=104.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+||+++|++|||||||++++.++.+...+.++.. +.....+... +..+.+.+||+||++.+...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999888777766664 4445566666 7888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhh---CCCCCcEEEEEecCCCCCCce
Q psy784 82 YSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~ 125 (128)
||++++++|+.+..|+..+.... ...++|+++|+||+|+.+.+.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~ 127 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA 127 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc
Confidence 99999999999999988776532 236789999999999975433
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=9.5e-29 Score=156.38 Aligned_cols=124 Identities=31% Similarity=0.580 Sum_probs=104.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC----------CcEEEEEEEeCCCccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD----------GQQCMLEILDTAGTEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~~ 71 (128)
.+|++++|++|||||||++++.++.+...+.++.. +.....+.+. +..+.+.+||+||++.+...+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 48999999999999999999999888777666654 3333444443 456889999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+++++++++|||++++++|..+..|+..+......++.|+++|+||+|+.+++++
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v 138 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV 138 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCcc
Confidence 9999999999999999999999999988877555568999999999999876554
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.1e-28 Score=154.21 Aligned_cols=122 Identities=35% Similarity=0.664 Sum_probs=104.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999888777666654 333445556777788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++.+..|...+.. ....+.|+++|+||+|+.+++.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~ 124 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVV 124 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCccccc
Confidence 99999999999999888765 33457899999999999776543
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=5.2e-29 Score=155.08 Aligned_cols=122 Identities=45% Similarity=0.825 Sum_probs=111.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
||+++|++|||||||++++.++.+.+.+.++. .+.....+..++..+.+.+||++|++.+...+...+++++++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999998888888876 57778888999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
+++++||+.+..|+..+..... .+.|+++++||.|+.+.++++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~ 123 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVS 123 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSC
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccch
Confidence 9999999999999998888444 579999999999998866654
No 35
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.1e-28 Score=154.67 Aligned_cols=124 Identities=76% Similarity=1.242 Sum_probs=110.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|++++|.+|||||||++++.++.+...+.++........+..++..+.+.+||+||++.|...+..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 57999999999999999999999888777777777666677778888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++.+..|...+.......++|+++++||+|+.+.+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~ 124 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV 124 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc
Confidence 99999999999999888877555678999999999999776543
No 36
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.6e-28 Score=153.48 Aligned_cols=124 Identities=36% Similarity=0.668 Sum_probs=106.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+|++++|++|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 358999999999999999999998877666655553 4445667778877889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ....++|+++|+||+|+.+.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~ 126 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEK-YGASNVVLLLIGNKCDLEEQREV 126 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHH-hCCCCCcEEEEEECccccccccc
Confidence 9999999999999999998876 34568999999999999766543
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.2e-28 Score=155.00 Aligned_cols=120 Identities=31% Similarity=0.529 Sum_probs=104.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
||+++|.+|||||||++++.++.+..++.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999988888877765 4444667778888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++++++++.+..|+..+.........|+++|+||+|+.+.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~ 122 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA 122 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence 99999999999999887664434457899999999996543
No 38
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.3e-28 Score=153.78 Aligned_cols=121 Identities=31% Similarity=0.589 Sum_probs=105.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.++.+.+.+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888777666654 344556777888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCC----CCCcEEEEEecCCCCCCc
Q psy784 83 SITAQSTFNDLSDLREQILRVKDT----DDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~ 124 (128)
|++++++++.+..|+..+...... .+.|+++|+||+|+.+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 126 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR 126 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc
Confidence 999999999999999988775432 579999999999997543
No 39
>KOG0394|consensus
Probab=99.97 E-value=9.1e-30 Score=156.77 Aligned_cols=124 Identities=35% Similarity=0.647 Sum_probs=113.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|+|||||+|++..++|...+..|.. ++..+++.++++.+.+++|||.|++.|......+|+++|++++||
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvy 89 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 89 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEe
Confidence 8999999999999999999999998887777764 888999999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCC---CCCcEEEEEecCCCCCC--ceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEE--RVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~v~ 127 (128)
|++++.||+++..|..++..+... ..-|+|++|||+|+.+. |+|+
T Consensus 90 dv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS 139 (210)
T KOG0394|consen 90 DVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS 139 (210)
T ss_pred ecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee
Confidence 999999999999999999885432 34799999999999873 7765
No 40
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=9.2e-29 Score=163.38 Aligned_cols=123 Identities=46% Similarity=0.762 Sum_probs=108.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|.+|||||||++++.++.+...+.+|..+.+...+.+++..+.+.+||++|++.|..++..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998888778888877777888888988999999999999999999888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh--------CCCCCcEEEEEecCCCCCCcee
Q psy784 84 ITAQSTFNDLSDLREQILRVK--------DTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++++++|+++..|+..+.... ...++|+++|+||+|+.+++++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v 131 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV 131 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc
Confidence 999999999999998887642 2357999999999999765443
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=1.4e-28 Score=153.36 Aligned_cols=123 Identities=31% Similarity=0.583 Sum_probs=106.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++..+.+.+.+.++.. +.....+...+..+.+.+||++|++.+...+..+++.++++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999888777666665 444566777888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|++++++|+.+..|+..+... ...+.|+++|+||.|+.++++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~ 124 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVG 124 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCC
Confidence 999999999999998887763 34579999999999998776653
No 42
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.3e-28 Score=154.71 Aligned_cols=125 Identities=38% Similarity=0.661 Sum_probs=106.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchh-HhHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFT-AMRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~ 80 (128)
.+||+++|++|||||||++++..+.+...+.++.. +.....+...+..+.+.+||++|++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 57999999999999999999998877666555553 4455667778888899999999999887 567888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|||++++++|+.+..|...+.......++|+++|+||+|+.+.++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 128 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP 128 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC
Confidence 99999999999999999888876666789999999999998766553
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=2.2e-28 Score=152.95 Aligned_cols=123 Identities=39% Similarity=0.726 Sum_probs=105.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
-+|++++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 37999999999999999999999887666656554 44456677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|.++..|+..+... ...+.|+++++||+|+.+.+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~ 125 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVV 125 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCC
Confidence 9999999999999999888763 3467899999999999766544
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=4.6e-28 Score=151.93 Aligned_cols=122 Identities=39% Similarity=0.653 Sum_probs=105.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|.+|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 7999999999999999999999877666555543 455566777888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++.+..|+..+... ..++.|+++|+||.|+.+++.+
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~ 127 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREV 127 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCC
Confidence 999999999999999888773 4578999999999999865443
No 45
>KOG0086|consensus
Probab=99.96 E-value=4.5e-29 Score=149.92 Aligned_cols=124 Identities=35% Similarity=0.579 Sum_probs=112.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|+.|.|||+|+.++..+++......|.. ++-..-+.+.+..+++++|||.|++.|+.....+|+++.+.++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 6999999999999999999999888776666654 555566777889999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceecC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVSG 128 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~~ 128 (128)
|++++++|+.+..|+..++. ...+++.+++++||.|+.++|+|+.
T Consensus 90 D~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~Vtf 134 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTF 134 (214)
T ss_pred eccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhH
Confidence 99999999999999999988 6788999999999999999999873
No 46
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=3e-28 Score=158.30 Aligned_cols=123 Identities=37% Similarity=0.582 Sum_probs=105.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECC-cEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDG-QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+|++++|++|||||||++++.++.+...+.++.. +.+...+...+ ..+.+.+||++|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888777777765 55556666654 578899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+.+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v 127 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV 127 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc
Confidence 999999999999999998877543 245789999999999866654
No 47
>KOG0079|consensus
Probab=99.96 E-value=3e-29 Score=149.82 Aligned_cols=122 Identities=39% Similarity=0.688 Sum_probs=112.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++.+|+|++|+|||+|+.++..+.|...|..|.. +....++.+++.++++++||+.|++.|..+...++++.+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5789999999999999999999999888877664 777788899999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|+++.+||.++..|++++.+ .++.+|-++|+||.|.++.|-|.
T Consensus 89 DVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~~RrvV~ 131 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDPERRVVD 131 (198)
T ss_pred ECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCccceeee
Confidence 99999999999999999987 57799999999999999987764
No 48
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=3.3e-28 Score=151.37 Aligned_cols=122 Identities=35% Similarity=0.601 Sum_probs=104.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999877666555543 444556677788888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++++..|+..+.. ...++.|+++++||+|+.+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~ 123 (161)
T cd04113 81 DITNRTSFEALPTWLSDARA-LASPNIVVILVGNKSDLADQREV 123 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEEchhcchhccC
Confidence 99999999999998887765 34578999999999999765543
No 49
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=5.4e-28 Score=150.96 Aligned_cols=123 Identities=33% Similarity=0.577 Sum_probs=105.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 37999999999999999999999887666656554 45566777788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++++..|+..+... ...+.|+++|+||+|+.+.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~ 126 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAV 126 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccC
Confidence 9999999999999998887763 3446999999999999765543
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3e-28 Score=158.66 Aligned_cols=120 Identities=32% Similarity=0.610 Sum_probs=105.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+..+||+++|.+|||||||++++..+.+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++++++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4578999999999999999999998888777777764 455556666777889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|||++++++|+.+..|+..+... .++.|+++|+||+|+.+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh
Confidence 999999999999999999888763 46899999999999964
No 51
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=4.4e-28 Score=150.84 Aligned_cols=121 Identities=38% Similarity=0.672 Sum_probs=103.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC--CcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD--GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+||+++|.+|+|||||++++.++.+...+.++.. +.....+... +..+.+.+||+||++.+...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999887766666654 3334555555 677889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++++++.+..|...+.. ...+.|+++|+||+|+..++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~v 124 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAVI 124 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhcccccCC
Confidence 9999999999999998887754 3568999999999999775544
No 52
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=2.4e-28 Score=152.65 Aligned_cols=122 Identities=48% Similarity=0.798 Sum_probs=103.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc-hhHhHHhhccCCcEEEEEEe
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~d 83 (128)
||+++|++|||||||++++..+.+...+.++....+...+..++..+.+.+||+||+.. +.......++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 68999999999999999999888777777777655566677888888899999999885 34556778999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCcee
Q psy784 84 ITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~v 126 (128)
++++++|+.+..|+..+..... ..++|+++|+||+|+.+.+.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v 124 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV 124 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc
Confidence 9999999999999888877543 568999999999999765544
No 53
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=2.1e-28 Score=156.16 Aligned_cols=118 Identities=35% Similarity=0.621 Sum_probs=102.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||++|++.+...+..++++++++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 89999999999999999999998887777777666666677778888999999999999999999999999999999999
Q ss_pred CChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 85 TAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 85 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+++++|+.+. .|+..+.. ..++.|+++|+||+|+.+.+
T Consensus 82 ~~~~sf~~~~~~~~~~i~~--~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 82 DSPDSLENVESKWLGEIRE--HCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred CCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhccCh
Confidence 9999999986 46666654 34689999999999997654
No 54
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=9.4e-28 Score=150.58 Aligned_cols=120 Identities=33% Similarity=0.614 Sum_probs=103.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+|++++|++|||||||++++.++.+.+.+.++.. +.....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 468999999999999999999998887766555543 4445667778888999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC---CCCCcEEEEEecCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLE 121 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~ 121 (128)
|||++++++++.+..|...+..... ..+.|+++|+||+|+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 9999999999999999887776432 3568999999999996
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=7.6e-28 Score=155.97 Aligned_cols=124 Identities=35% Similarity=0.671 Sum_probs=105.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.. .+..+.+.+||++|++.+...+..++++++++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999887766655553 444555655 4667889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++++|+++..|+..+.........|+++|+||+|+.+.+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v 127 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQV 127 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccccc
Confidence 9999999999999999998877544456889999999999876554
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=9.2e-28 Score=154.36 Aligned_cols=122 Identities=38% Similarity=0.641 Sum_probs=105.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 47999999999999999999999887766666654 44456666778888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+.. .....|+++|+||+|+.+.+++
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~--~~~~~piivVgNK~Dl~~~~~~ 128 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQ--NCDDVCKVLVGNKNDDPERKVV 128 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEECccccccccc
Confidence 999999999999999888765 3467899999999999775543
No 57
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=9.2e-28 Score=153.03 Aligned_cols=122 Identities=36% Similarity=0.597 Sum_probs=104.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999888766666654 344566777788888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++|+.+..|+..+... ...+.|+++++||+|+.+.+.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v 123 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVV 123 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccC
Confidence 999999999999998888763 3456899999999999865544
No 58
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=7.1e-28 Score=153.30 Aligned_cols=118 Identities=31% Similarity=0.572 Sum_probs=100.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.++.+...+.++....+...+... +..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999998887777777665555555555 67788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 83 SITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 83 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|++++++|+++.. |+..+.. ..++.|+++|+||+|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNH--FCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEeChhhhhC
Confidence 9999999999975 5555543 2468999999999999664
No 59
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=7.3e-28 Score=150.85 Aligned_cols=117 Identities=30% Similarity=0.629 Sum_probs=101.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++..+.+...+.++.. +.....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998877666666654 444455566777889999999999999998899999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++++++.+..|...+.... .++|+++|+||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD 118 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc
Confidence 9999999999999999887743 3899999999999973
No 60
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=1.6e-27 Score=148.20 Aligned_cols=121 Identities=31% Similarity=0.560 Sum_probs=102.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.+..+...+.++.. +.....+...+..+.+.+||+||+..+......+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999877665545443 556667777777788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|++++++|+.+..|+..+... ...+.|+++++||+|+.+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDE-RGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEEChhccccCc
Confidence 999999999999998887662 334799999999999965443
No 61
>KOG0095|consensus
Probab=99.96 E-value=1.7e-28 Score=146.94 Aligned_cols=123 Identities=40% Similarity=0.664 Sum_probs=111.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|..|+|||+|++++..+-+++-...|.. ++.-+++.++++++++++|||.|++.|+.....+|+.+++++++|
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEE
Confidence 7999999999999999999999988877655654 777788999999999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|++..++|+-+..|+.++..+ ....+--|+|+||+|+.++|+|+
T Consensus 88 discqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp 131 (213)
T KOG0095|consen 88 DISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVP 131 (213)
T ss_pred ecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhh
Confidence 999999999999999999985 34456779999999999998875
No 62
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=1.4e-27 Score=152.63 Aligned_cols=122 Identities=37% Similarity=0.695 Sum_probs=102.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+||+++|++|||||||++++.++.+.. .+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999877643 4445544 44445677788889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+++..|+..+... ...+.|+++|+||+|+.+++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVV 124 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhcccc
Confidence 9999999999999998888773 3457899999999999765543
No 63
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.5e-27 Score=155.12 Aligned_cols=123 Identities=31% Similarity=0.563 Sum_probs=106.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||++|++.+...+..++++++++++|
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 37999999999999999999999877666555554 55567788888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.+.+
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~ 135 (216)
T PLN03110 92 YDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSV 135 (216)
T ss_pred EECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCC
Confidence 9999999999999998887763 3467999999999999766554
No 64
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=6.3e-28 Score=151.81 Aligned_cols=116 Identities=33% Similarity=0.655 Sum_probs=101.2
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (128)
|+++|++|||||||++++.++.+...+.++..+.+...+..++..+.+.+||+||++.+...+...+++++++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999988877777776666667778888889999999999999999999999999999999999
Q ss_pred ChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 86 AQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 86 ~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++|+++.. |+..+.. ..++.|+++|+||+|+.++
T Consensus 81 ~~~s~~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 81 SPASFENVKEKWYPEVKH--FCPNTPIILVGTKLDLRED 117 (174)
T ss_pred CHHHHHHHHHHHHHHHHh--hCCCCCEEEEecChhhhhC
Confidence 9999999864 6665554 3468999999999999753
No 65
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.96 E-value=1.5e-27 Score=151.48 Aligned_cols=116 Identities=29% Similarity=0.533 Sum_probs=101.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|.+|||||||++++..+.+.+.+.+|.. +.....+..++..+.+.+||++|++.+...+..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999888887777775 455567888888899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|++++++|+++..|+..+.... ....| ++|+||+|+.
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcc
Confidence 9999999999999998887642 34567 6789999995
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.8e-27 Score=148.34 Aligned_cols=117 Identities=30% Similarity=0.551 Sum_probs=100.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|.+|||||||++++..+.+.+.+.++.. +........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999887766555543 344445666788888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++.+++.+..|+..+.. ..++.|+++|+||+|+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~--~~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSKWYEELRE--YRPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHH--hCCCCcEEEEEECccCch
Confidence 99999999999988888865 245789999999999853
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=2.6e-27 Score=147.48 Aligned_cols=121 Identities=34% Similarity=0.618 Sum_probs=104.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++|++++|++|||||||++++.++.+.+.+.++.. ......+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999887665555554 34456778888889999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|.+++++++.+..|+..+.... .++.|+++++||+|+.+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKR 122 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccC
Confidence 99999999999999999887743 3789999999999997544
No 68
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=160.39 Aligned_cols=123 Identities=24% Similarity=0.435 Sum_probs=104.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC-------------CcEEEEEEEeCCCccchhH
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-------------GQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~~ 66 (128)
+..+||+++|..|||||||++++.++.+...+.+|.. +.....+.++ +..+.+++||++|++.|..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3578999999999999999999999888777767765 3334555553 2568899999999999999
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhC-----------CCCCcEEEEEecCCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----------TDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~ 123 (128)
++..++++++++|+|||++++.+|+++..|+..+..... ..++|+++|+||+|+.++
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 999999999999999999999999999999999987431 135899999999999765
No 69
>KOG0093|consensus
Probab=99.96 E-value=7.1e-28 Score=143.76 Aligned_cols=123 Identities=34% Similarity=0.649 Sum_probs=111.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++.+|||+|+.+..+..+.+.+..|.. +.-.+++...+.++++++|||.|++.++.....+++++.++|++|
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy 101 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY 101 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence 5999999999999999999999999888766654 555566666788899999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|+.+.+||..+..|...+..+ .+.+.|+|+++||||+.++|-|+
T Consensus 102 DitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis 145 (193)
T KOG0093|consen 102 DITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVIS 145 (193)
T ss_pred ecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeee
Confidence 999999999999999988884 78899999999999999998876
No 70
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=1.4e-27 Score=150.30 Aligned_cols=117 Identities=32% Similarity=0.602 Sum_probs=102.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|++|+|||||++++.++.+...+.++..+.+...+..++..+.+.+||+||++.+...+..++++++++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999998888888888776767778888888899999999999999999999999999999999
Q ss_pred CCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 84 ITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++++|+++. .|+..+.. ..++.|+++++||+|+.+
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRK--HNPKAPIILVGTQADLRT 118 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhhcc
Confidence 99999999985 46655554 345799999999999964
No 71
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.9e-27 Score=149.64 Aligned_cols=118 Identities=32% Similarity=0.619 Sum_probs=101.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|++|+|||||++++..+.+.+.+.++..+.....+..++..+.+.+||+||++.+...+...+++++++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999998887777777766666677788888889999999999999999999999999999999
Q ss_pred CCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 84 ITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 84 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++.+|+++.. |...+.. . .++.|+++++||+|+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~-~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKE-Y-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHh-h-CCCCCEEEEeEchhhhcC
Confidence 999999999974 5444443 2 678999999999998653
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=2.6e-27 Score=152.14 Aligned_cols=123 Identities=37% Similarity=0.595 Sum_probs=99.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchh--------HhHHhhccC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFT--------AMRDLYMKN 74 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 74 (128)
+||+++|.+|||||||++++.++.+...+.++.. +.+...+.+++..+.+.+||+||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999888777777764 4445566778888889999999965432 113345789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCcee
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|++++|||+++++||+.+..|+..+..... ..++|+++|+||+|+.+.+.+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~ 134 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA 134 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc
Confidence 9999999999999999999999988877542 567999999999999765543
No 73
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=5.4e-27 Score=146.05 Aligned_cols=121 Identities=40% Similarity=0.723 Sum_probs=102.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.+..+...+.++.. +.....+...+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999998877655545443 344556677787788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|++++++++.+..|+..+..+ ..++.|+++++||+|+.+.++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~-~~~~~pivvv~nK~D~~~~~~ 122 (164)
T smart00175 81 DITNRESFENLKNWLKELREY-ADPNVVIMLVGNKSDLEDQRQ 122 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcccccC
Confidence 999999999999988877764 336899999999999976443
No 74
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=6.9e-27 Score=145.48 Aligned_cols=120 Identities=59% Similarity=1.040 Sum_probs=107.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|++|||||||++++....+...+.++..+........++..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999998877777777666667777778888899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++.+++.+..|+..+.......++|+++|+||+|+.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 9999999999999999988655678999999999999763
No 75
>KOG0395|consensus
Probab=99.96 E-value=1.5e-27 Score=152.47 Aligned_cols=127 Identities=73% Similarity=1.218 Sum_probs=120.0
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++.+|++++|.+|+|||+|..++..+.|...|.+|.++.+.+.+.++++.+.+.++|+.|++++..+...++++.+++++
T Consensus 1 ~~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 1 LREYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CCceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||+++++.||+.+..+++.+........+|+++|+||+|+.+.|+|+
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS 127 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC
Confidence 99999999999999999999666666779999999999999988875
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=6.5e-27 Score=145.88 Aligned_cols=121 Identities=33% Similarity=0.514 Sum_probs=100.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChh-ceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIE-DSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+|++++|++|||||||++++..+ .+.+++.++.. +.....+... +..+.+.+||+||++.+..+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 56667666654 4434445443 57789999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|||++++++++++..|+..+... ..+.|+++|+||+|+.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~ 125 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTA--SKHMPGVLVGNKMDLADKAEV 125 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccCC
Confidence 999999999999999888877763 267999999999999766544
No 77
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=5.7e-27 Score=150.56 Aligned_cols=118 Identities=44% Similarity=0.737 Sum_probs=105.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
||+++|.+|||||||++++..+.+...+.++..+.....+.+.+..+.+++||+||+..+...+..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988877777777666667777888888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++.+++.+..|+..+.......++|+++|+||+|+.+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99999999999988888866667899999999999965
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=7.9e-27 Score=146.36 Aligned_cols=120 Identities=37% Similarity=0.663 Sum_probs=101.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+||+++|++|||||||++++.++.+.+...++.. +.....+...+..+.+.+||+||++.+...+..+++++++++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999877666555543 444556777888888999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhC---CCCCcEEEEEecCCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~ 123 (128)
|++++.+++++..|...+..... ..++|+++|+||+|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK 124 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc
Confidence 99999999999888776655322 347999999999999743
No 79
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=8.9e-27 Score=144.36 Aligned_cols=122 Identities=69% Similarity=1.169 Sum_probs=108.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
||+++|++|||||||++++++..+...+.++..+.....+...+..+.+++||+||+..+.......++.++++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999877777777777777777777777788899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++++++.++..|+..+.........|+++++||+|+.+.+++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 122 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV 122 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccccee
Confidence 999999999999999888655578999999999999875443
No 80
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=7.5e-27 Score=152.28 Aligned_cols=122 Identities=43% Similarity=0.726 Sum_probs=101.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhcc-CCcEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMK-NGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 80 (128)
+||+++|++|||||||++++..+.+. ..+.++.. +.....+.+++....+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887765 45555554 5666778888888889999999988 344455667 9999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~ 125 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS 125 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec
Confidence 99999999999999998888775555689999999999998766653
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=9.8e-27 Score=144.45 Aligned_cols=122 Identities=37% Similarity=0.717 Sum_probs=102.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|+|||||++++.++.+.+.+.++.. ......+...+..+.+.+||+||++.+...+..++++++++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999877655544443 344555666777788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|++++++++.+..|+..+..... .+.|+++++||+|+.+.+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~ 123 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVV 123 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCC
Confidence 99999999999998888877433 37999999999999865543
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=6.4e-27 Score=145.55 Aligned_cols=118 Identities=28% Similarity=0.523 Sum_probs=97.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|++|||||||+.++..+.+.+.+.++. ..+...+.+++..+.+.+||++|++. ..++++++++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999888776655443 33456788888888899999999875 345688999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC--Cceec
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE--ERVVS 127 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~v~ 127 (128)
+++++||+++..|+..+.......+.|+++|+||+|+.. +++++
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~ 120 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID 120 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC
Confidence 999999999999999888755557799999999999853 44443
No 83
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=6.1e-27 Score=152.27 Aligned_cols=114 Identities=28% Similarity=0.471 Sum_probs=94.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|.+|||||||++++..+.+.. +.++...... .. ....+.+.+||++|++.+...+..++++++++++|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~-~~--~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY-LK--QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE-EE--EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999988754 3444432211 11 1245679999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++++|+++..|+..+... ...+.|+++|+||+|+.+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccc
Confidence 99999999999999888763 446799999999999976
No 84
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=1.3e-26 Score=150.08 Aligned_cols=123 Identities=36% Similarity=0.613 Sum_probs=104.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.+..+...+.++.. +.....+.+++..+.+.+||++|++.+...+..+++.++++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999998877666555553 44455677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+.. ....+.|+++++||+|+.+.+.+
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~-~~~~~~piiiv~nK~Dl~~~~~~ 129 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQ-HANANMTIMLIGNKCDLAHRRAV 129 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccCccccCC
Confidence 999999999999988887765 33468999999999999876554
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=6.2e-27 Score=147.05 Aligned_cols=119 Identities=28% Similarity=0.417 Sum_probs=101.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhce-eEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
-+|++++|.+|||||||++++.++.+. ..+.+|.... ....+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ll 83 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACL 83 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEE
Confidence 479999999999999999999998887 6777776543 34566778888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
|||++++.+++.+..|+..+.. ..++|+++|+||+|+.+.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~ 124 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQ 124 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccc
Confidence 9999999999998887775432 3479999999999997554
No 86
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1e-26 Score=147.10 Aligned_cols=122 Identities=47% Similarity=0.768 Sum_probs=106.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
.||+++|.+|||||||++++.++.+...+.++........+...+..+.+.+||+||++.+...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999998776666677665556667777778889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+++..+++.+..++..+.......+.|+++++||+|+.+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 123 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ 123 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc
Confidence 999999999999999888865557889999999999976543
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=1.4e-26 Score=149.99 Aligned_cols=123 Identities=42% Similarity=0.659 Sum_probs=100.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|++|||||||++++.++.+. .+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999987763 3444443 34445666777788899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHh-hhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILR-VKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+++..+|..... .......|+++|+||+|+...+++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i 138 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV 138 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc
Confidence 999999999999875544433 333456899999999999766554
No 88
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=8.9e-27 Score=146.71 Aligned_cols=119 Identities=32% Similarity=0.614 Sum_probs=101.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+.|++++|++|||||||++++.++.+...+.++....+...+.+++..+.+.+||++|++.+...+...+.+++++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 36899999999999999999999888777777777666667788888889999999999999988888899999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 83 SITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 83 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|++++++|+.+.. |...+.. ...+.|+++|+||+|+.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKH--FCPNVPIILVGNKKDLRND 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChhcccC
Confidence 9999999988864 5554443 2457999999999998653
No 89
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=1.9e-26 Score=143.39 Aligned_cols=118 Identities=38% Similarity=0.624 Sum_probs=102.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++.++.+...+.++.. +.....+.+.+..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998877655555554 333345566777788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|.+++.+++.+..|+..+..+....+.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 999999999999998888886667889999999999997
No 90
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=1.8e-26 Score=147.57 Aligned_cols=117 Identities=31% Similarity=0.491 Sum_probs=100.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhc-eeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIED-SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+||+++|++|||||||++++.++.+.. .+.++... .....+..++..+.+.+||++|++.+...+..++++++++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999987764 45555543 3345678888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+|+.+..|+..+.. ..++.|+++|+||+|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~--~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQN--LEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHh--cCCCCCEEEEEEcccccc
Confidence 999999999999888887766 245799999999999864
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.9e-26 Score=142.98 Aligned_cols=123 Identities=39% Similarity=0.638 Sum_probs=103.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|++|||||||++++.++.+.+.+.++.. +.....+.+.+..+.+.+||+||+..+...+..+++.++++++|
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 37999999999999999999998776655544443 45556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|...+.. ....+.|+++|+||+|+.+.+++
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~~~~~~i 130 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQ-YANNKVITILVGNKIDLAERREV 130 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECccccccccc
Confidence 999999999999888877765 34457999999999999866554
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=2.2e-26 Score=144.09 Aligned_cols=119 Identities=29% Similarity=0.385 Sum_probs=95.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|.+|||||||++++.++.+...+..+ .+.......+++..+.+.+||+||++.+...+...+..++++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999998876554333 33334445566778889999999999888888888899999999999
Q ss_pred CCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 84 ITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 84 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
++++.+++.+.. |...+.. . ..+.|+++|+||+|+.+.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~-~-~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRR-L-GVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHH-h-CCCCCEEEEEEchhcccccc
Confidence 999999999864 4454544 2 35899999999999976543
No 93
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.95 E-value=7.5e-27 Score=146.02 Aligned_cols=117 Identities=27% Similarity=0.432 Sum_probs=96.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
.|+++|++|||||||++++.++.+...+.++.... . ..+....+.+.+||+||++.+...+..++++++++++|||.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-S--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-e--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 47999999999999999999877766666665422 2 23344566799999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+++.++.....|+..+... .+++|+++|+||+|+.+.+.+
T Consensus 78 t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 78 ADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred CCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCH
Confidence 9999999998888777542 368999999999999776543
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=1.4e-26 Score=145.28 Aligned_cols=117 Identities=21% Similarity=0.383 Sum_probs=95.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++..+.+.. +.+|..... ..+.. ..+.+.+||+||++.+...+..++++++++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999998766543 344443222 22332 456799999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++++..++..+.......+.|+++|+||+|+.+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 99999999999988887776633446789999999999964
No 95
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=1.2e-26 Score=145.45 Aligned_cols=120 Identities=37% Similarity=0.661 Sum_probs=100.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|++++|++|||||||++++.++.+...+.++..+.........+..+.+++||+||++.+.......++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998876666677666666677778888899999999999988888888999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++++.+|......|..... ....+.|+++|+||+|+.+.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIR-HYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred CCCHHHHHHHHHHHHHHHH-hhCCCCCEEEEEccHHhhhch
Confidence 9999999887654444333 233489999999999997654
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=2.2e-26 Score=145.26 Aligned_cols=118 Identities=21% Similarity=0.378 Sum_probs=96.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++..+.+. .+.+|..... ..... ..+.+.+||+||++.+...+..++++++++++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~-~~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNV-ETVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccce-EEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999999876653 3445543222 23333 346799999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||+++++++++...++..+.......+.|+++|+||+|+.+.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 999999999999888888766444467999999999999653
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.95 E-value=3.4e-26 Score=145.36 Aligned_cols=120 Identities=21% Similarity=0.391 Sum_probs=98.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+.+||+++|++|||||||++++..+.+... .++.. +.....+.. ++..+.+.+||+||++.+...+..+++++++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 679999999999999999999998776544 34332 333333433 345678999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+|+++..+++.+..++..+.......+.|+++|+||+|+.+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 9999999999998888888777655566899999999999964
No 98
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=1.7e-26 Score=143.71 Aligned_cols=115 Identities=22% Similarity=0.393 Sum_probs=94.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|.+|||||||++++..+.+.. +.++..... ..+.. ..+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 489999999999999999998776653 445543222 22333 45679999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++.+++++..++..+.......+.|+++++||+|+.+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 999999999988888776533445789999999999964
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=1.6e-26 Score=146.58 Aligned_cols=118 Identities=23% Similarity=0.383 Sum_probs=95.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++||+++|.+|||||||++++..+.+. .+.+|.... ...+. ...+.+.+||+||++.+...+..+++++|++++|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~-~~~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCccee-EEEEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999876664 344554322 22233 3456799999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++++++++..++..+.......+.|+++++||+|+.+.
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 999999999988877777655333467999999999999754
No 100
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=2.8e-26 Score=147.39 Aligned_cols=112 Identities=30% Similarity=0.613 Sum_probs=99.3
Q ss_pred ECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCCh
Q psy784 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ 87 (128)
Q Consensus 9 ~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (128)
+|.+|||||||++++..+.+...+.+|.. +.....+..++..+.+.+||++|++.|..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888777777764 55566677788889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 88 STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+|+.+..|...+... .+++|+++|+||+|+.+
T Consensus 81 ~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCEEEEEECccccc
Confidence 9999999999988774 36899999999999864
No 101
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.2e-26 Score=142.23 Aligned_cols=116 Identities=17% Similarity=0.367 Sum_probs=96.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
+|+++|++|||||||++++.++ +...+.+|.... ...+... .+.+++||+||+..+...+..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999876 545555555422 3344444 45699999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++..+++++..|+..+.......+.|+++|+||+|+.+.+
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 9999999999999888764445689999999999997754
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=8.9e-26 Score=143.34 Aligned_cols=116 Identities=23% Similarity=0.391 Sum_probs=94.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
++|++++|++|||||||++++..+.+.. +.+|.... ...+.. ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~-~~~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFN-VETVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccc-eEEEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998776643 44444322 223333 4467999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++++++....++..+.......+.|+++|+||.|+.+
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 9999999999888777775533345789999999999965
No 103
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=1.1e-25 Score=141.78 Aligned_cols=118 Identities=20% Similarity=0.357 Sum_probs=95.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|++|||||||++++.+..+ ..+.++.. .....+.++ .+.+.+||+||++.+...+..++++++++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 568999999999999999999997644 23334433 223344444 35699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++.++++...|+..+.......+.|+++|+||+|+.+.
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 999999999998888887766444578999999999999653
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=1.8e-25 Score=137.88 Aligned_cols=117 Identities=42% Similarity=0.768 Sum_probs=100.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||+..+......++++++++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887666444443 444556666677788999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|.+++++++.+..|+..+.. ....+.|+++++||+|+.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 81 DITNRESFENLDKWLKELKE-YAPENIPIILVGNKIDLE 118 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEEccccc
Confidence 99999999999998887777 334679999999999996
No 105
>KOG0088|consensus
Probab=99.94 E-value=3.4e-27 Score=142.55 Aligned_cols=124 Identities=36% Similarity=0.619 Sum_probs=112.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|++++|+.=+|||+|+-++..++|......|.. .+..+.+.+.+....+.+|||.|++.|...-+.+|++++++++|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV 92 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV 92 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence 58999999999999999999999888766555654 56677888889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
||+++++||+.+..|..++..+ .-..+.+++|+||+|+.++|+|+
T Consensus 93 yDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt 137 (218)
T KOG0088|consen 93 YDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVT 137 (218)
T ss_pred EeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhh
Confidence 9999999999999999999984 44568999999999999999886
No 106
>KOG0393|consensus
Probab=99.94 E-value=6.2e-27 Score=147.61 Aligned_cols=122 Identities=34% Similarity=0.633 Sum_probs=110.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+..+|++++|.+++|||+|+..+..+.|+..|.||..+.+...+.++ +..+.+.+|||.|+++|...++..|.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 35789999999999999999999999999999999999999999995 99999999999999999999989999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+||++.+++||+++...|..... ..++++|+++||+|.||.++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~-~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIK-HHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHH-hhCCCCCEEEEeehHHhhhC
Confidence 99999999999997665555444 45699999999999999853
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.94 E-value=2e-25 Score=140.12 Aligned_cols=114 Identities=23% Similarity=0.377 Sum_probs=93.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
|++++|.+|||||||++++.+..+.. +.+|..... ..+.. ..+.+.+||+||+..+...+..++++++++++|+|.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~-~~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV-ETVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE-EEEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999876543 445543222 23333 456699999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++++.++..|+..+.......+.|+++++||+|+.+
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 99999999999988887644445689999999999964
No 108
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=4.1e-25 Score=140.81 Aligned_cols=118 Identities=31% Similarity=0.588 Sum_probs=99.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+.|++++|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+.......+..+++++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 46999999999999999999998777766666666666666777888888999999999988887777889999999999
Q ss_pred eCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+++.++|+++.. |+..+.. ..++.|+++|+||+|+.+
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~--~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRR--YCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEeeChhhhh
Confidence 9999999999974 6665554 345799999999999854
No 109
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=6.8e-25 Score=140.57 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=89.4
Q ss_pred eeEEEEECCCCCChHHHHH-HHhcCC-----CCCCCCCChh--ceeEEE--------EEECCcEEEEEEEeCCCccchhH
Q psy784 3 EYKIVVLGSGGVGKSALTV-QFVQGI-----FVEKYDPTIE--DSYRKQ--------VEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
.+||+++|.+|||||||+. ++.++. +...+.+|.. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999996 554432 3445556652 222222 24678889999999999875 3
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
....++++++++++|||++++.||+++. .|...+... .++.|+++|+||+|+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccc
Confidence 4566899999999999999999999997 476666553 35789999999999964
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.3e-24 Score=141.26 Aligned_cols=120 Identities=33% Similarity=0.662 Sum_probs=102.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+..+|++++|++|||||||++++..+.+.+.+.++.. +.....+..++..+.+.+||++|++.+...+..++..+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 3578999999999999999999888777777666654 444455556778889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|||++++.+|..+..|+..+... ..+.|+++++||+|+.+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc
Confidence 999999999999999998888763 46799999999999865
No 111
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.93 E-value=4.9e-25 Score=130.93 Aligned_cols=115 Identities=32% Similarity=0.558 Sum_probs=86.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC--CCCCCh-hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
||+++|++|||||||+++|.+..... ...... .+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999876651 111222 233333445566666699999999999998888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhh-CCCCCcEEEEEecCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCD 119 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D 119 (128)
||++++++++.+..+...+.... ...++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999866654444433 256699999999998
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.93 E-value=1.3e-24 Score=137.02 Aligned_cols=117 Identities=24% Similarity=0.402 Sum_probs=94.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|++|+|||||++++..+.+.. +.++..... ..+..+ .+.+.+||+||++.+...+..++++++++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 36899999999999999999999876654 334443322 233343 45699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+++++++.....++..+.......+.|+++++||+|+.+
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 99999999988887777776544446799999999999965
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.93 E-value=1.5e-24 Score=134.89 Aligned_cols=116 Identities=23% Similarity=0.339 Sum_probs=91.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+|+++|++|||||||++++.+.. ....+.++..-. ...+. ...+.+.+||+||++.+...+..++++++++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~-~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN-VESFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc-eEEEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999864 344444554321 22222 345669999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhh--CCCCCcEEEEEecCCCCCC
Q psy784 84 ITAQSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~ 123 (128)
++++.++..+..++..+.... ...++|+++|+||+|+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 999999988887777765532 2357999999999999754
No 114
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=2e-24 Score=134.10 Aligned_cols=115 Identities=23% Similarity=0.430 Sum_probs=92.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
+|+++|++|||||||++++.++.+... .++.. .....+.. +..+.+.+||+||++.+...+..++..++++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~-~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG-FNVEMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccC-cceEEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999998776433 33332 11223333 3456799999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++.++.....++..+.......+.|+++|+||+|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 99999999888888776644446899999999999964
No 115
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=1.9e-24 Score=135.08 Aligned_cols=116 Identities=25% Similarity=0.415 Sum_probs=90.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC------CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFV------EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 78 (128)
+|+++|++|||||||++++.+.... ..+.++.. .....+.+++ ..+.+||+||++.+...+..++++++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVG-LNIGTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccc-cceEEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 5899999999999999999863211 12222222 1223444444 4599999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++|+|.++.++++....++..+.......++|+++++||+|+.+.
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999988888888776545578999999999998654
No 116
>KOG0091|consensus
Probab=99.93 E-value=4.6e-25 Score=133.91 Aligned_cols=125 Identities=34% Similarity=0.632 Sum_probs=107.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+++++++|++-+|||+|+..+..+++++-.+||.. +.+...+.. .+..+++++|||.|++.|+.....+|+++-+.++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 57999999999999999999999998877677654 333332222 6788999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCCceec
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVS 127 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~v~ 127 (128)
|||+++++||+.+..|..+.......+..+ +.+|++|+|+..+|+|+
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt 135 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT 135 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc
Confidence 999999999999999999988866656554 58899999999999986
No 117
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=4.1e-24 Score=135.91 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=93.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.++++++|.+|||||||++++.++.+.. +.++... ....+...+ +++.+||+||+..+...+..++++++++++|+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP-TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999865532 2333322 223344443 55899999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|.++++++.....++..+.......+.|+++|+||+|+..
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 9999999988888877776544456899999999999864
No 118
>KOG0097|consensus
Probab=99.93 E-value=8e-25 Score=130.32 Aligned_cols=123 Identities=37% Similarity=0.588 Sum_probs=111.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|.+++|+-|+|||+|+..+...++..+...+.. ++-..-+.+.++++++++||+.|++.|+.....+++++.+.++||
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 7899999999999999999999888877666654 444555677899999999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|+..+.+...+..|+....+ ...++..+++++||.|+..+|.|+
T Consensus 92 ditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~ 135 (215)
T KOG0097|consen 92 DITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVT 135 (215)
T ss_pred EehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCc
Confidence 99999999999999999988 778899999999999999998875
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=4.2e-24 Score=132.51 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=94.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
|++++|.+|||||||++++.+... ..+.++... ....+.+. .+.+.+||+||+..+...+..+++.++++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~-~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGF-NVETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCc-ceEEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998763 233333321 12333443 45699999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++++++.....++..+.......+.|+++++||+|+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 9999999998888887775556789999999999997643
No 120
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=4.3e-24 Score=132.62 Aligned_cols=115 Identities=19% Similarity=0.306 Sum_probs=89.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
|++++|+++||||||++++..+.+.. +.++.... ...+.. ..+.+.+||+||++.+...+..++++++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN-VETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC-eEEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998765543 33443221 123333 345699999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+++.++.....++..+.......+.|+++|+||+|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 999888777666665544233457999999999999753
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=5.2e-24 Score=135.83 Aligned_cols=117 Identities=21% Similarity=0.399 Sum_probs=95.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+..|++++|++|||||||++++.++.+. .+.++... ....+.+.+ ..+.+||+||+..+...+..++++++++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999986653 33344332 234555555 4589999999999999899999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+++.++++....++..+.......+.|+++++||+|+.+
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 99999999988888888877644556799999999999964
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=4.9e-24 Score=131.56 Aligned_cols=116 Identities=22% Similarity=0.395 Sum_probs=95.7
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (128)
++++|++|||||||++++.+..+...+.++..... ..+...+ +.+.+||+||+..+...+..++++++++++|+|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM-RKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce-EEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 78999999999999999999887777666554322 2333333 67999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 86 AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+..++.....++..+.......++|+++|+||+|+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 999998888877777664445689999999999997643
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=8.4e-24 Score=133.52 Aligned_cols=118 Identities=28% Similarity=0.498 Sum_probs=97.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++||+++|+.||||||+++++..+.... ..||.. .....+.+.+. .+.+||.+|+..++..|+.+++++++++||
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g-~~~~~i~~~~~--~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG-FNIEEIKYKGY--SLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS-EEEEEEEETTE--EEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-cCcccc-cccceeeeCcE--EEEEEeccccccccccceeeccccceeEEE
Confidence 46899999999999999999998765432 333332 33344555554 489999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|.++.+.+.+....+..+.......++|+++++||.|+.+.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 999999999999888888877666678999999999999763
No 124
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=135.54 Aligned_cols=123 Identities=39% Similarity=0.636 Sum_probs=98.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeE-EEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
|..+|++++|++|||||||++++..+.+...+.++...... ......+..+++.+||++|++.+...+..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999999888777777653333 33333444788999999999999999999999999999
Q ss_pred EEEeCCChhHH-HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 80 LVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 80 ~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|+|.....++ +....|...+.. ......|+++++||+|+..++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRE-LAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHH-hCCCCceEEEEecccccccch
Confidence 99999995555 555555555555 333579999999999998764
No 125
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=6.2e-23 Score=132.30 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=90.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCC-cEEEEEEe
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNG-QGFILVYS 83 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 83 (128)
+++++|++|||||+|++++..+.+...+.++............+....+.+||+||+..+...+..+++.+ +++++|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887655543332222111111113445699999999999999988899998 99999999
Q ss_pred CCCh-hHHHHHHHHHHHHHhhh--CCCCCcEEEEEecCCCCCCc
Q psy784 84 ITAQ-STFNDLSDLREQILRVK--DTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 84 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~ 124 (128)
..+. .++..+..++..+.... ..+++|+++++||+|+...+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 9997 67777777766654422 23689999999999997643
No 126
>KOG0073|consensus
Probab=99.90 E-value=1.5e-22 Score=122.79 Aligned_cols=116 Identities=22% Similarity=0.384 Sum_probs=96.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++++|+++|..|+||||+++++.+.. .....|| ..+.-++..+++.. +++||.+|+..++..|+.+|...|++++|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt-~gf~Iktl~~~~~~--L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPT-LGFQIKTLEYKGYT--LNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCc-cceeeEEEEecceE--EEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 37899999999999999999999865 2222233 23334444445544 99999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+|.+++..+++....+..+....+..+.|+++++||.|+.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 9999999999998888887776666789999999999997
No 127
>KOG0081|consensus
Probab=99.90 E-value=5.2e-25 Score=133.22 Aligned_cols=124 Identities=33% Similarity=0.616 Sum_probs=107.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEE---------CCcEEEEEEEeCCCccchhHhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEV---------DGQQCMLEILDTAGTEQFTAMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~D~~g~~~~~~~~~~~~~ 73 (128)
+|++.+|++|+||||++.+...++|......|.. ++-.+.+-+ .+..+.+++|||.|++.|+.....+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 4778899999999999999999888776655542 333333333 345678999999999999999999999
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
.+=+++++||+++..||.++..|+..+.....+.+.-+++++||+|+.++|.|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs 143 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS 143 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh
Confidence 999999999999999999999999999998889999999999999999999876
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=2.6e-22 Score=126.13 Aligned_cols=118 Identities=23% Similarity=0.344 Sum_probs=93.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.++++++|++|||||||++++.+..+.. +.++.. .....+...+ ..+.+||+||+..+...+..+++.++++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g-~~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG-FNIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC-cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999865432 233332 2223344454 4589999999999988888999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|+++..++.....++..+.......++|+++++||+|+.+.
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 999999999888888877766444567999999999999654
No 129
>KOG0083|consensus
Probab=99.89 E-value=1.6e-24 Score=127.79 Aligned_cols=119 Identities=31% Similarity=0.626 Sum_probs=102.7
Q ss_pred EECCCCCChHHHHHHHhcCCCCCC-CCCCh-hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC
Q psy784 8 VLGSGGVGKSALTVQFVQGIFVEK-YDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (128)
++|.+++|||+|+-++..+.+-.. ..+|. .++..+.+..++.++++++||+.|++.|+.....+|+.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988887766443 33333 3666677888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 86 AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
++.||++++.|+.++..+ ....+.+++++||+|+.++|.|.
T Consensus 82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~ 122 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVK 122 (192)
T ss_pred cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccc
Confidence 999999999999999885 44568899999999998887765
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.89 E-value=7.2e-22 Score=124.73 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=82.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--C-----CCCCCCCh-------hceeEE--EEEE---CCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI--F-----VEKYDPTI-------EDSYRK--QVEV---DGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~--~-----~~~~~~~~-------~~~~~~--~~~~---~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+++|++++|||||++++.+.. + ...+.++. ...... ...+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998731 1 11111111 011111 1222 5667789999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.....+++++|++++|+|+++..+++....|+... ..++|+++|+||+|+.+.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcC
Confidence 99999999999999999999877766665554322 246899999999999653
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=1.9e-21 Score=119.51 Aligned_cols=120 Identities=32% Similarity=0.585 Sum_probs=93.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|.+|+|||||++++........+.++.. +.....+..++..+.+.+||+||+..+...+...++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999998765555444433 44444466677667899999999999999999999999999999
Q ss_pred EeCCCh-hHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQ-STFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|.... .++.... .+...+..... .+.|+++++||+|+...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDA 123 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcc
Confidence 999877 6666555 55555554332 38999999999999763
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=5.9e-22 Score=124.09 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=83.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCcc----chhHhHH---hhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE----QFTAMRD---LYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~---~~~~~~~ 76 (128)
+|+++|.+|||||||++++.+.... .....++.+.....+...+. ..+.+||+||.. ....... ..+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999974321 12222333333333444443 359999999963 1111222 2345699
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCce
Q psy784 77 GFILVYSITAQ-STFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~ 125 (128)
++++|+|++++ ++++.+..|...+..... ..+.|+++|+||+|+.+.+.
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 99999999998 789988888887776432 24789999999999976543
No 133
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=2.5e-21 Score=117.97 Aligned_cols=117 Identities=44% Similarity=0.792 Sum_probs=96.2
Q ss_pred EECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCC
Q psy784 8 VLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (128)
++|++|+|||||++++.+... .....++..+..............+.+||+||...+.......++.++++++|+|.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998665 3444455556666666666667789999999999998888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 87 QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+.++.....++..........+.|+++++||+|+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 99999888875444444567889999999999997653
No 134
>KOG4252|consensus
Probab=99.88 E-value=8.7e-24 Score=130.26 Aligned_cols=123 Identities=33% Similarity=0.571 Sum_probs=106.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
-+|++++|..++||||++++++.+-|...+..+.. +.....+.++++.+...+||+.|+++|......+|+++++.++|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 37999999999999999999998888777665553 34344455566666688999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
|+-+++.||+....|...+.. .+..+|.++|-||+|+.++.++.
T Consensus 100 FSTTDr~SFea~~~w~~kv~~--e~~~IPtV~vqNKIDlveds~~~ 143 (246)
T KOG4252|consen 100 FSTTDRYSFEATLEWYNKVQK--ETERIPTVFVQNKIDLVEDSQMD 143 (246)
T ss_pred EecccHHHHHHHHHHHHHHHH--HhccCCeEEeeccchhhHhhhcc
Confidence 999999999999999998877 67889999999999998876653
No 135
>KOG0075|consensus
Probab=99.88 E-value=1.4e-22 Score=121.14 Aligned_cols=117 Identities=20% Similarity=0.375 Sum_probs=101.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+..+.++|-.++|||||+|.+..+.+.+.-.++.. .....++...+.+.+||.||+..|+.+|+.+.++++++++|+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG---fnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~V 96 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG---FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVV 96 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc---ceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEe
Confidence 57899999999999999999998877665555544 223345566677999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|..+++.+......+..+...+...++|+++++||.|+++
T Consensus 97 Daad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 97 DAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred ecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 9999999999888888888878889999999999999975
No 136
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.8e-21 Score=132.42 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=89.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccc-------hhHhHHhhccCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQ-------FTAMRDLYMKNG 75 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 75 (128)
.|+++|.+|||||||+++|.+.. -...+..|+.......+.+. +.. +.+||+||..+ ........++++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 58999999999999999999743 23345556666666666663 344 89999999642 222333356789
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCc
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 124 (128)
+++++|+|+++.++++.+..|..++..+.. ..+.|+++|+||+|+.+.+
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 999999999988889999888888877543 2478999999999997654
No 137
>KOG0070|consensus
Probab=99.87 E-value=8.1e-22 Score=121.98 Aligned_cols=118 Identities=23% Similarity=0.420 Sum_probs=98.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++.+|+++|-.+|||||++.++..+..... .||.. +...++.+. .+.|++||..|++.++..|.+++++.+++|||
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG-fnVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG-FNVETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc-cceeEEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 468999999999999999999998765444 45554 223344445 45599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|.++++.+.++...+..+.......+.|+++.+||.|+++.
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 999999999999888888777555678999999999999764
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=3.3e-21 Score=124.23 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=83.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccc---------hhHhHHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ---------FTAMRDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 72 (128)
.++|+++|++|||||||++++.+..... ....++.+.....+.+.+. ..+.+||+||... +... ...+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LEEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HHHH
Confidence 3699999999999999999999865322 2222222333444555443 2589999999632 1111 1236
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..+|++++|+|.+++.++.....|...+.. ....+.|+++|+||+|+.++.
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChH
Confidence 789999999999998888777666665554 334568999999999997654
No 139
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=3.3e-21 Score=132.92 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCcc---------chhHhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE---------QFTAMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~ 73 (128)
++|+++|.+|||||||+|++.+.... .....++.+.....+.+.+. ..+.+|||+|.. .|.... ..+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHH
Confidence 79999999999999999999986532 23334555566666766332 258999999962 222222 2478
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++|++++|+|++++.+++....|...+.. ....+.|+++|+||+|+.+.+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~-l~~~~~piIlV~NK~Dl~~~~ 317 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEE-LGAEDIPQLLVYNKIDLLDEP 317 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHH-hccCCCCEEEEEEeecCCChH
Confidence 89999999999998888777665555544 334578999999999997643
No 140
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=4.6e-21 Score=135.59 Aligned_cols=112 Identities=28% Similarity=0.376 Sum_probs=86.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh--------HHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM--------RDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 72 (128)
.++++++|++|||||||+|++.+.. +...+.+++.+.....+.+++.. +.+|||||...+... ....+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5799999999999999999999853 34555566667777777777765 789999998654432 23467
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++|++++|+|.+++.+++.. |+..+. ..+.|+++|+||+|+.+
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKI 324 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCC
Confidence 899999999999998877664 444332 24789999999999964
No 141
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=8.7e-21 Score=121.52 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=80.2
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCCC--C----------Ch-hceeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKYD--P----------TI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~~~--~----------~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
+|+++|.+++|||||++++.. +.+...+. . +. .........+......+.+||+||++.|.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999997 44433220 0 00 111122233344456699999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+++++|++++|+|+++.. +.....++..+. ..++|+++++||+|+.++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL----ELGLKPIVVINKIDRPDA 132 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 9999999999999998742 222222233222 247899999999999654
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=1.1e-20 Score=118.11 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=78.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCC-CCCChhceeEEEEEECCcEEEEEEEeCCCccchh---------HhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------AMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~ 73 (128)
.+|+++|.+|+|||||++++.+..+... +..++.+.....+... ...+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 3799999999999999999998665322 2222333333333333 3569999999974211 01111123
Q ss_pred CCcEEEEEEeCCChhHH--HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 74 NGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
.++++++|+|.++..++ +....|+..+.. ...+.|+++|+||+|+.+.+.+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~--~~~~~pvilv~NK~Dl~~~~~~ 131 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKP--LFKNKPVIVVLNKIDLLTFEDL 131 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHh--hcCcCCeEEEEEccccCchhhH
Confidence 36899999999987653 555566666544 2247999999999999765543
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=1.6e-20 Score=115.77 Aligned_cols=112 Identities=23% Similarity=0.308 Sum_probs=81.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh--------HHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM--------RDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~ 73 (128)
++++++|++|+|||||++++.+.... ....++..+.....+...+. .+.+||+||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGI--PVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCE--EEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999986532 22334444554555555544 4899999997654322 234678
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+++++++|+|++++.+......+.. ..+.|+++++||+|+.+..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc
Confidence 8999999999998777766544333 4579999999999997644
No 144
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.7e-20 Score=117.22 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=79.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.++++|.+|+|||||++++....+.....+... ......+... .....+.+|||||+..+...+...++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998765543222221 1111222322 13456899999999999999888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+++....+... .+..+. ..++|+++|+||+|+.+
T Consensus 82 d~~~~~~~~~~~-~~~~~~----~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAK----AANVPFIVALNKIDKPN 116 (168)
T ss_pred ECCCCccHHHHH-HHHHHH----HcCCCEEEEEEceeccc
Confidence 999743221111 111122 25789999999999974
No 145
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=2.8e-20 Score=115.67 Aligned_cols=111 Identities=19% Similarity=0.071 Sum_probs=75.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCC---CCCCCCC-ChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI---FVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.++++|++|||||||++++.+.. +..+..+ ++.+.....+.+.+ ...+.+|||||++.+.......++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999998632 2222111 12222223344431 3358999999999988777778899999999
Q ss_pred EEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|+|+++ ..+.+.+. .+.. ....|+++++||+|+.++
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~---~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILEL---LGIKRGLVVLTKADLVDE 119 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHH---hCCCcEEEEEECccccCH
Confidence 999987 33333222 1211 123499999999999764
No 146
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=1.1e-20 Score=134.05 Aligned_cols=113 Identities=28% Similarity=0.362 Sum_probs=86.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh--------HHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM--------RDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 72 (128)
.++++++|.+|+|||||+|++.+.. +.....+++.+.....+..++.. +.+|||||...+... ....+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 5799999999999999999999854 33445556666667777776655 899999997654432 23367
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+++|++++|+|.+++.+++....|.. ..+.|+++|+||+|+.+.+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccc
Confidence 88999999999999887765433322 4578999999999997654
No 147
>KOG0071|consensus
Probab=99.85 E-value=2.4e-20 Score=110.84 Aligned_cols=120 Identities=20% Similarity=0.358 Sum_probs=100.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++++++++|-.++||||++.++.-+.... ..+|.. +...++++.+- +|.+||++|++..+..|.++|.+..++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvG-FnvetVtykN~--kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG-FNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc-cccccc-eeEEEEEeeee--EEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 57899999999999999999998765432 223332 33445555444 599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+|..+++..++++..+..+.........|+++.+||.|+++.+.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence 99999999999998888888877788899999999999987653
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=1.2e-20 Score=118.58 Aligned_cols=116 Identities=21% Similarity=0.249 Sum_probs=81.7
Q ss_pred EECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccch----hH---hHHhhccCCcEE
Q psy784 8 VLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQF----TA---MRDLYMKNGQGF 78 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~----~~---~~~~~~~~~~~~ 78 (128)
++|++|||||||++++.+... ...+..++.+.....+.+. +.. +.+||+||.... .. .....+++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998653 2233334444444445555 444 899999996321 11 223357789999
Q ss_pred EEEEeCCCh------hHHHHHHHHHHHHHhhhCC------CCCcEEEEEecCCCCCCce
Q psy784 79 ILVYSITAQ------STFNDLSDLREQILRVKDT------DDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 79 i~v~d~~~~------~s~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~~~ 125 (128)
++|+|..+. .++++...+...+...... .+.|+++|+||+|+...+.
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 999999987 5777777777777653322 4799999999999976543
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=4.5e-21 Score=118.09 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=77.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch------hHhHHhh--ccC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF------TAMRDLY--MKN 74 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~--~~~ 74 (128)
++|+++|.+|||||||+|+|.+.. ...++.+++.+.....+.+.+.. +.++|+||.... ......+ ..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999954 33456667777777788887866 899999993321 2222223 368
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.|++++|+|.++.+.-.. ....+. ..++|+++++||+|+..++.
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~----e~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLL----ELGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHH----HTTSSEEEEEETHHHHHHTT
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHH----HcCCCEEEEEeCHHHHHHcC
Confidence 999999999987543322 223333 34799999999999976543
No 150
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=4.2e-20 Score=126.55 Aligned_cols=119 Identities=19% Similarity=0.204 Sum_probs=87.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc-------hhHhHHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~~ 76 (128)
.|+++|.+|||||||+++|.+.. ....+..|+.......+.+.+ ...+.+||+||... ........+++++
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 68999999999999999999743 233444555555566666654 23489999999642 2222233456799
Q ss_pred EEEEEEeCCCh---hHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCc
Q psy784 77 GFILVYSITAQ---STFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 124 (128)
++++|+|+++. ++++++..|..++..+.. ..+.|+++|+||+|+.+++
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~ 289 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE 289 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH
Confidence 99999999986 678888888887776532 3578999999999997653
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=5.5e-20 Score=123.23 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=76.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh--------HhHHhhccC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--------AMRDLYMKN 74 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 74 (128)
+|+++|.+|||||||+|+|.+.... ....+|+...........+ .++.+|||||..... ......++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999986543 2333455444333333333 358999999965321 122346789
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++|+|+++..+.+ ..+...+. ..+.|+++|+||+|+.+.
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~----~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQ----NLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHH----hcCCCEEEEEECeeCCCH
Confidence 99999999999876654 22222222 247899999999999753
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=9.9e-20 Score=130.17 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=84.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCc----------cchhHhH-H
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT----------EQFTAMR-D 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~-~ 69 (128)
.++++++|.+|||||||+|+|++... .....+++.+.....+..++.. +.+|||||. +.+.... .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence 37999999999999999999998643 3344556666667777777766 679999994 2333332 2
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..++++|++++|+|++++.+++.+.. +..+. ..+.|+++|+||+|+.+
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~----~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRV-LSMVI----EAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHH----HcCCCEEEEEECcccCC
Confidence 35789999999999999888776642 22222 35789999999999965
No 153
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=6.3e-20 Score=113.50 Aligned_cols=109 Identities=20% Similarity=0.248 Sum_probs=76.8
Q ss_pred EECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH------hHHhhc--cCCcEE
Q psy784 8 VLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA------MRDLYM--KNGQGF 78 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~~~~ 78 (128)
++|.+|+|||||++++.+.... ..+..++.+.....+.+++. .+.+|||||+..+.. ....++ ++++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999986432 23334444554556666654 589999999876654 244455 489999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
++|+|.++.++.. .++..+.. .++|+++++||+|+.+.+.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~ 118 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRG 118 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhccccc
Confidence 9999999865432 23333322 4689999999999976543
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.3e-19 Score=129.62 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=80.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccc--------hhHhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (128)
.+|+++|.+|||||||+|++.++... .....++.+.........+.. +.+|||||.+. +......+++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999985432 222233345555556666665 88999999762 3444556788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+|++++|+|+++..++.. ..+...+. ..++|+++|+||+|+..
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~----~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLR----RSGKPVILAANKVDDER 160 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECccCCc
Confidence 9999999999998765532 12222222 35799999999999864
No 155
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=9.4e-20 Score=112.46 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=77.2
Q ss_pred EEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH--------hHHhhccCCc
Q psy784 7 VVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA--------MRDLYMKNGQ 76 (128)
Q Consensus 7 ~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 76 (128)
+++|.+|+|||||++++.+.. +.....+++.+.........+. .+.+||+||...+.. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGR--EFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCe--EEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999753 2233334444444555555554 489999999887543 3345678899
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 77 GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++++|+|..+..+..... ....+. ..+.|+++|+||+|+.+.+
T Consensus 79 ~ii~v~d~~~~~~~~~~~-~~~~~~----~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 79 VILFVVDGREGLTPADEE-IAKYLR----KSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEEeccccCCccHHH-HHHHHH----hcCCCEEEEEECcccCChH
Confidence 999999998765443321 122222 2469999999999997754
No 156
>KOG3883|consensus
Probab=99.83 E-value=3.6e-19 Score=107.30 Aligned_cols=124 Identities=36% Similarity=0.533 Sum_probs=103.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccch-hHhHHhhccCCcEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQF-TAMRDLYMKNGQGF 78 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~ 78 (128)
..|++++|..++|||.++..+.-+ ....++.+|.++.+...+... +-.=.+.++||.|...+ ...-.+++..+|++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 469999999999999999999863 333456677777777766543 23334899999998777 66667889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++||+..+++||+.+...-..+........+|+++++||+|+.+++++
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v 136 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV 136 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc
Confidence 999999999999999998888888888889999999999999887665
No 157
>PTZ00099 rab6; Provisional
Probab=99.83 E-value=2.4e-19 Score=113.27 Aligned_cols=100 Identities=34% Similarity=0.536 Sum_probs=84.9
Q ss_pred CCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh
Q psy784 26 GIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK 104 (128)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 104 (128)
+.|.+.+.+|.. +.....+.+++..+.+.+||++|++.+...+..+++++|++++|||++++.+|+.+..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~- 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE- 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh-
Confidence 345666777775 565677888888999999999999999999999999999999999999999999999998888763
Q ss_pred CCCCCcEEEEEecCCCCCCcee
Q psy784 105 DTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 105 ~~~~~p~ivv~nK~D~~~~~~v 126 (128)
...+.|+++|+||+|+.+.+++
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v 103 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKV 103 (176)
T ss_pred cCCCCeEEEEEECcccccccCC
Confidence 3467899999999999765544
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.83 E-value=2.1e-19 Score=123.74 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=76.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCccch-hHh-------HHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-TAM-------RDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~~~ 72 (128)
.++++++|.+|||||||+|+|.+..+.. ....++.......+..++.+ +.+|||||.... ... ....+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 3599999999999999999999866532 12233444445556666654 899999997432 111 12347
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.++|++++|+|..+ ++.....++..... ..+.|.++|+||+|+.+.
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~---~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLR---SLNIVPIFLLNKIDIESK 175 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHH---hcCCCEEEEEEhhcCccc
Confidence 89999999999765 44444333322222 235678899999999643
No 159
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=3e-19 Score=125.89 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=82.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCccch--hHhH------HhhccC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--TAMR------DLYMKN 74 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~------~~~~~~ 74 (128)
.+++++|.+|||||||+|+|.+.... .....++.+.....+...+.. .+.+|||+|.... ...+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999985432 223334444445555554431 4789999997331 1111 224688
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|++++|+|++++.+++.+..+...+.. ....+.|+++|+||+|+.+
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e-l~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEE-IDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHH-hccCCCCEEEEEEcccCCC
Confidence 9999999999998888777655554444 3345799999999999965
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=6.1e-19 Score=110.25 Aligned_cols=114 Identities=28% Similarity=0.346 Sum_probs=79.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccch----------hHh-HH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF----------TAM-RD 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~ 69 (128)
.++|+++|.+|+|||||++++.+.... .....+..+.....+...+.. +.+||+||.... ... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999985432 223334444444555556655 789999996432 111 12
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..++.+|++++|+|.+++.+..... ++..+ ...+.|+++++||+|+.+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLI----LEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHH----HhcCCCEEEEEeccccCCc
Confidence 3567899999999999887655432 22222 2246899999999999765
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=3.7e-19 Score=112.90 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=78.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCC-----------------hhceeEEEEEECCcEEEEEEEeCCCccchhHh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-----------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM 67 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (128)
+|+++|.+|+|||||+|++.+.......... ............ ...+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999985443322111 111112222333 345999999999999888
Q ss_pred HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 68 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+...++.+|++++|+|..+..+.... .++..+ ...+.|+++++||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~----~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIA----REGGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHH----HHCCCCeEEEEECCCCcc
Confidence 88999999999999999876544322 222222 226899999999999976
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=3.7e-19 Score=110.41 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=75.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCC--CCChhceeEEEEEECCcEEEEEEEeCCCccchhH--------hHHh
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA--------MRDL 70 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~ 70 (128)
|...+|+++|++|+|||||+|++.+....... ..+........ .......+.+||+||...... ....
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 56789999999999999999999986532221 12222222222 233345689999999654332 2344
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+..+|++++|+|..++.+.. ...+...+.. .+.|+++++||+|+..
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~----~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEG-DEFILELLKK----SKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHhCCEEEEEEECCCccCch-HHHHHHHHHH----hCCCEEEEEEchhccc
Confidence 588899999999999862111 1112222222 3689999999999973
No 163
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.82 E-value=9.4e-20 Score=111.21 Aligned_cols=96 Identities=27% Similarity=0.312 Sum_probs=68.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-----chhHhHHhhccCCcEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-----QFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i 79 (128)
||+++|++|||||||++++.+.... +.++. .+.+.. .+||+||.. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~------~~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ------AVEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccce------eEEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999876532 22221 122222 579999973 3443333 488999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|||++++.++... .|.. . ...|+++|+||+|+.+
T Consensus 68 lv~d~~~~~s~~~~-~~~~-~------~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 68 LVQSATDPESRFPP-GFAS-I------FVKPVIGLVTKIDLAE 102 (142)
T ss_pred EEecCCCCCcCCCh-hHHH-h------ccCCeEEEEEeeccCC
Confidence 99999999887552 2222 1 1249999999999965
No 164
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.2e-19 Score=126.98 Aligned_cols=118 Identities=16% Similarity=0.158 Sum_probs=84.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc----hh---HhHHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----FT---AMRDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~---~~~~~~~~~~~ 76 (128)
+|+|+|.+|||||||+|+|.+.. ....+..|+.......+.+.+. .|.+||+||... .. ......+.+++
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 78999999999999999999743 2345556666666666776664 499999999532 11 11223467899
Q ss_pred EEEEEEeCCCh----hHHHHHHHHHHHHHhhhC----------CCCCcEEEEEecCCCCCCc
Q psy784 77 GFILVYSITAQ----STFNDLSDLREQILRVKD----------TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 77 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~p~ivv~nK~D~~~~~ 124 (128)
++++|+|+++. +.++.+..+..++..+.. ..+.|+++|+||+|+.+.+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~ 300 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR 300 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH
Confidence 99999999853 345555555555555432 3578999999999997643
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.82 E-value=5.5e-19 Score=128.91 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=84.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--C-----CCCCCCC---------hhceeEEEEEE---CCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI--F-----VEKYDPT---------IEDSYRKQVEV---DGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~--~-----~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~ 65 (128)
+++++|+.++|||||+++++... . ...+..+ +.......+.+ ++..+.+.+|||||+.+|.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 79999999999999999998632 1 1111111 11111122223 4666889999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..+...++.+|++++|+|+++..+.+....|+.... .++|+++|+||+|+.+
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCc
Confidence 999999999999999999998777776666655432 4689999999999964
No 166
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=5.2e-19 Score=111.98 Aligned_cols=113 Identities=21% Similarity=0.297 Sum_probs=72.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhcee-EEEEEECCcEEEEEEEeCCCcc----------chhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE----------QFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~ 71 (128)
.++++++|.+|+|||||+|++.+..+.....++..... ...+..+ . .+.+||+||.. .+......+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D--GFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C--cEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 57999999999999999999998653333222222111 1122223 2 48999999942 233333344
Q ss_pred cc---CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 72 MK---NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 72 ~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++ .++++++|+|.+++.+..... .+..+. ..+.|+++++||+|+.+.
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~----~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR----ERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCCH
Confidence 44 357999999998765544432 122222 347899999999999753
No 167
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=6.7e-19 Score=122.90 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=86.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch-------hHhHHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-------TAMRDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~ 76 (128)
.|+++|.+|||||||+|+|.+.. ....+..|+.......+.+.+. -.+.++|+||...- .......+++++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 68999999999999999999743 3344566776666766666532 23899999996532 122223578899
Q ss_pred EEEEEEeCC---ChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCc
Q psy784 77 GFILVYSIT---AQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 77 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 124 (128)
++++|+|++ ..+.++....+...+..+.. ..+.|+++|+||+|+.+..
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~ 291 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE 291 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH
Confidence 999999998 45667777777777766422 2468999999999997543
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=8.9e-19 Score=123.08 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=83.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCccc----hh---HhHHhhccCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQ----FT---AMRDLYMKNG 75 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----~~---~~~~~~~~~~ 75 (128)
.|+++|.+|||||||+++|++... ...+..|+.......+.+. +. .+.+||+||... .. ......++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~--~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGR--SFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCc--eEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 689999999999999999998442 2344455555545555554 34 499999999642 11 1222345679
Q ss_pred cEEEEEEeCCCh---hHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCC
Q psy784 76 QGFILVYSITAQ---STFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 76 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 122 (128)
+++++|+|+++. ++++....|..++..+.. ..+.|+++|+||+|+.+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 999999999864 677777777777776533 25789999999999854
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1e-18 Score=123.98 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=80.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc--------hhHhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (128)
++|+++|.+|||||||+|+|.+... .....+++.+.......+.+. .+.+|||||... +.......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGR--EFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCc--EEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998542 334444555566666667664 499999999876 2333455688
Q ss_pred CCcEEEEEEeCCChhHHH--HHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 74 NGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+|++++|+|..++.+.. .+..|+. ..+.|+++|+||+|+.+
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~-------~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR-------KSNKPVILVVNKVDGPD 123 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH-------HcCCcEEEEEECccCcc
Confidence 999999999998754432 2222222 23789999999999754
No 170
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=8.6e-20 Score=117.39 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=70.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCC-----------ccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG-----------TEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 71 (128)
.++|+++|.+|||||||+|++.+..+.....+... .....+... .+.+||+|| ++.+...+..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 47999999999999999999998665433222211 111222222 489999999 45565555555
Q ss_pred cc----CCcEEEEEEeCCChhHH----HHH--HHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 72 MK----NGQGFILVYSITAQSTF----NDL--SDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 72 ~~----~~~~~i~v~d~~~~~s~----~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+. .++++++|+|.++...+ ... ......+.......++|+++|+||+|+.+.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 43 35677888887643221 000 000011111112357999999999999654
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5.2e-19 Score=125.24 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=80.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCc--------cchhHhHHhhccC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--------EQFTAMRDLYMKN 74 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~ 74 (128)
+|+++|.+|||||||+|+|.+... .....+++.+.....+.+.+.. +.+|||||. ..+.......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998542 2344455556666666777765 999999996 3344455667889
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|++++|+|..+..+.... .+...+. ..+.|+++|+||+|+.+.+
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~----~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLR----KSGKPVILVANKIDGKKED 123 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHH----HhCCCEEEEEECccCCccc
Confidence 9999999999875443321 1122222 2478999999999987643
No 172
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=5.8e-19 Score=116.18 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=78.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCC-C-----CCCCCh-----------hceeEEEEEECCcEEEEEEEeCCCccchhHh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFV-E-----KYDPTI-----------EDSYRKQVEVDGQQCMLEILDTAGTEQFTAM 67 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~-~-----~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (128)
+|+++|+.|+|||||+++++..... . ....+. .........+.....++.+||+||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999862110 0 000000 0111122223334456999999999999999
Q ss_pred HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 68 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
....++.+|++++|+|..+.... ....++..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 99999999999999999986443 33344444433 4789999999999975
No 173
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.81 E-value=5e-19 Score=113.19 Aligned_cols=114 Identities=19% Similarity=0.082 Sum_probs=73.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC----CCCC----CCCChhceeEEEEEEC------------CcEEEEEEEeCCCccc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI----FVEK----YDPTIEDSYRKQVEVD------------GQQCMLEILDTAGTEQ 63 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~----~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~ 63 (128)
++|+++|++|+|||||++++.+.. +... ...++.+.....+.+. +....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 1111 1112222222222222 2356699999999976
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+........+.+|++++|+|..+.........+. +.. ..+.|+++++||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~---~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGE---ILCKKLIVVLNKIDLIP 134 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHH---HcCCCEEEEEECcccCC
Confidence 6554445567789999999998754433322222 111 13679999999999964
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=1.2e-18 Score=123.45 Aligned_cols=112 Identities=29% Similarity=0.307 Sum_probs=82.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh----------H-H
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM----------R-D 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~-~ 69 (128)
.++++++|.+|+|||||+|++++.. ......+++.+.....+..++.. +.+|||||....... . .
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHHH
Confidence 4799999999999999999999754 23344456666666666666664 889999996433211 1 2
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
..++.+|++++|+|++++.+.+.... +..+ ...+.|+++|+||+|+.
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~-~~~~----~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRI-AGLI----LEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHH-HHHH----HHcCCcEEEEEECcccC
Confidence 36889999999999998777665432 2222 23478999999999997
No 175
>KOG0074|consensus
Probab=99.80 E-value=8e-19 Score=104.55 Aligned_cols=120 Identities=28% Similarity=0.406 Sum_probs=96.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++|++++|-.++|||||+..|.+.+.. ...+|. .+..+.+.+++ .+.+.+||.+|+...+..|..+|.+.|++|+|
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~-hltpT~-GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTN-GFNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh-hccccC-CcceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 5799999999999999999999876532 222222 23344454443 35699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|.++...|+++...+-++...-....+|+.+..||.|+.-+.
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 9999999999988877777775556679999999999996543
No 176
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=3.3e-19 Score=123.81 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=87.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch---------hHhHH
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF---------TAMRD 69 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~ 69 (128)
|....|+++|.||||||||+|||.+. ++..+..+++++.......+.+.. |.++||+|-+.. .....
T Consensus 1 m~~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHH
Confidence 44467999999999999999999984 455667778888888888888888 999999995532 23344
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+..+|+++||+|....-+-..- .+..+....++|+++|+||+|....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~-----~ia~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADE-----EIAKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHH-----HHHHHHHhcCCCEEEEEEcccCchh
Confidence 578889999999999874333211 1222233457999999999999743
No 177
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.80 E-value=1.7e-18 Score=115.74 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=77.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCCC--------CCCC-----h------hceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG--IFVEK--------YDPT-----I------EDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~--~~~~~--------~~~~-----~------~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
+|+++|++|+|||||+++|+.. ..... ...+ . .........+......+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6899999999999999999852 11100 0000 0 011122233444556699999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.......++.+|++++|+|.++.... ....++... ...++|+++++||+|+.+.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~----~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC----RLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH----HhcCCCEEEEEECCccCCC
Confidence 988778889999999999999875332 222333322 2357899999999998654
No 178
>COG1159 Era GTPase [General function prediction only]
Probab=99.80 E-value=9.1e-19 Score=116.03 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=82.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch--------hHhHHhh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF--------TAMRDLY 71 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~ 71 (128)
+.-.++++|.||||||||+|++.+.+. ......|++.....-++.++.+ +.++||||-..- .......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q--iIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ--IIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce--EEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 445789999999999999999999643 3445567777777777666555 999999994432 2333446
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+..+|+++||+|......- -..+..... ...+.|+++++||+|+.....
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d~~il~~l---k~~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GDEFILEQL---KKTKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred hccCcEEEEEEeccccCCc--cHHHHHHHH---hhcCCCeEEEEEccccCCcHH
Confidence 8889999999999974322 111122221 225689999999999877543
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=1.6e-18 Score=129.02 Aligned_cols=113 Identities=26% Similarity=0.378 Sum_probs=84.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc----------chhHhH-Hh
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAMR-DL 70 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~~ 70 (128)
++++++|.+|||||||+|++++... ...+.+++.+.....+.+++.. +.+|||||.. .+.... ..
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 6999999999999999999998653 3455566677767777777776 6799999953 222222 23
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.++.+|++++|+|+++..+.+.... +..+. ..++|+++|+||+|+.++
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i-~~~~~----~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKV-MSMAV----DAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHH-HHHHH----HcCCCEEEEEEchhcCCh
Confidence 4788999999999999877776643 33232 247899999999999753
No 180
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.79 E-value=6e-18 Score=107.92 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=79.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC--CCCC-----------------CCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI--FVEK-----------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
+..+|+++|+.++|||||+++|+... .... ....+.......+........+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35789999999999999999998632 1110 0011112222333312344459999999999
Q ss_pred chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.|.......+..+|++++|+|+.+....+....+.. + ...++|+++++||+|+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~-~----~~~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI-L----RELGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH-H----HHTT-SEEEEEETCTSSH
T ss_pred ceeecccceecccccceeeeeccccccccccccccc-c----cccccceEEeeeeccchh
Confidence 999999999999999999999997644333322222 2 235789999999999973
No 181
>KOG1707|consensus
Probab=99.79 E-value=1.1e-18 Score=123.66 Aligned_cols=123 Identities=24% Similarity=0.386 Sum_probs=101.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++.+||+++|+.|||||||+-++....++++. |...+.+.....+....+...++|++...+-+......+++++++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 36799999999999999999999998887654 33333334445556666778999999888888888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCc
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~ 124 (128)
+|+++++++.+.+...|..+.+... ..++|+|+|+||+|..+..
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 9999999999999999988888433 2689999999999997643
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=2.4e-18 Score=116.53 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=74.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCccchh--------HhHHhh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--------AMRDLY 71 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 71 (128)
+.-.|+++|++|||||||+|++.+..... ....++...........+ .++.++||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 34579999999999999999999865432 222333333332232222 569999999965432 223346
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+..+|++++|+|+++..+ ....+.... ....+.|+++|+||+|+..
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~---l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEK---LKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHH---HhhcCCCEEEEEECCcCCC
Confidence 788999999999998322 111112111 1234689999999999973
No 183
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=2.8e-18 Score=128.05 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=80.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh----------HH
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM----------RD 69 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~ 69 (128)
|+.++|+++|++|||||||+|++.+... ..++..++.+.....+..++ ..+.++|+||..++... ..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHH
Confidence 6789999999999999999999997432 23333444444444444444 45899999998766421 11
Q ss_pred hh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.+ ...+|++++|+|.++.+... ++...+.+ .++|+++++||+|+.+++.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQN 129 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccC
Confidence 22 35789999999998765432 23333333 4799999999999976544
No 184
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.79 E-value=4.9e-18 Score=123.62 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=81.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-hhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
..+++++|+.++|||||++++.+..+...+.+. +.......+.+.+.. .+.+|||||++.|..++...+..+|++++|
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 468999999999999999999986665443222 222222334443331 589999999999999999899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+++...-+.... +.. ....++|+++++||+|+.+
T Consensus 166 Vda~dgv~~qT~e~-i~~----~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 166 VAADDGVMPQTIEA-ISH----AKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EECCCCCCHhHHHH-HHH----HHHcCCCEEEEEECccccc
Confidence 99987432222221 111 2235789999999999964
No 185
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.79 E-value=8.8e-18 Score=99.41 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=70.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch---------hHhHHhhcc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF---------TAMRDLYMK 73 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~ 73 (128)
+|+++|.+|+|||||+|+|++... .....+++.......+.+++.. +.++|+||-... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998432 2233344444445566667776 689999995321 112233348
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEec
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 117 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (128)
.+|++++|+|.+++.. +.....+..+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 8999999999877322 2222222222 2 68999999998
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=4e-18 Score=126.08 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=82.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCC-Chh--ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIE--DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
..+|+++|+.++|||||+++|....+.....+ .+. ..+......++....+.+|||||++.|..++...+..+|+++
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaI 323 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAI 323 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEE
Confidence 36899999999999999999987655433221 111 222223333445567999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+|+++....+....+ ..+ ...++|+++++||+|+.+
T Consensus 324 LVVDA~dGv~~QT~E~I-~~~----k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 324 LIIAADDGVKPQTIEAI-NYI----QAANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEECcCCCChhhHHHH-HHH----HhcCceEEEEEECCCccc
Confidence 99999875332222211 111 235789999999999975
No 187
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=3.5e-18 Score=111.35 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=78.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC--CCCCCCC-------C--------hhceeEEEEEEC--------CcEEEEEEEeCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI--FVEKYDP-------T--------IEDSYRKQVEVD--------GQQCMLEILDTA 59 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~-------~--------~~~~~~~~~~~~--------~~~~~~~~~D~~ 59 (128)
+|+++|+.++|||||+.+|+... ....... . +.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998522 1111000 0 001111112222 346789999999
Q ss_pred CccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|+..|.......++.+|++++|+|+.+..+.+....+.. +. ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-AL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HH----HcCCCEEEEEECCCcc
Confidence 999999999999999999999999998765554332222 22 2468999999999986
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=5.3e-18 Score=120.37 Aligned_cols=114 Identities=29% Similarity=0.325 Sum_probs=81.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch----------hHh-HH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF----------TAM-RD 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~-~~ 69 (128)
.++++++|.+|+|||||+|++++.. ......+++.+.....+..++.. +.+|||||.... ... ..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 4899999999999999999999743 23334445555555566666655 789999995422 111 12
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..++.+|++++|+|++++.+.+.... +..+ ...+.|+++++||+|+.++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~----~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRI-AGLA----LEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH----HHcCCcEEEEEECccCCCH
Confidence 36788999999999998766655432 2222 2347899999999999743
No 189
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=3.2e-18 Score=111.18 Aligned_cols=112 Identities=22% Similarity=0.309 Sum_probs=77.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCC-----------CCCCh---------hceeEEEEEE---CCcEEEEEEEeCCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEK-----------YDPTI---------EDSYRKQVEV---DGQQCMLEILDTAGT 61 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~-----------~~~~~---------~~~~~~~~~~---~~~~~~~~~~D~~g~ 61 (128)
+++++|+.++|||||+++|+....... +..+. .......+.. ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 00010 0001111111 345678999999999
Q ss_pred cchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
..|.......+..+|++++|+|..+..+... ..++..+. ..+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECcccC
Confidence 9998888889999999999999987765533 22333322 2358999999999985
No 190
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.78 E-value=7.5e-19 Score=110.47 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=75.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhh---ccCCcE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLY---MKNGQG 77 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~ 77 (128)
+.-.++++|+.|+|||+|+.+|..+...+...+. .+.. .+.+ ....-.+.++|+|||...+...... ...+.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 3567999999999999999999998554433222 2221 1222 1222348999999999888766554 788999
Q ss_pred EEEEEeCCC-hhHHHHHHHHHHHHHhhh--CCCCCcEEEEEecCCCCCCc
Q psy784 78 FILVYSITA-QSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 78 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~ 124 (128)
++||+|.+. .........++..+.... ....+|+++++||.|+...+
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999984 445555555555555433 34679999999999997654
No 191
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=4.4e-18 Score=110.15 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=72.3
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCC------------------------------CCCChhceeEEEEEECCcEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------------YDPTIEDSYRKQVEVDGQQCM 52 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (128)
||+++|++|+|||||+++|+. +..... ...++.+.....+..++. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence 589999999999999999975 222100 011112222233333444 4
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+.+|||||+..|.......++.+|++++|+|+++...-+.. ..+..+.. ....++++|+||+|+.+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~---~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSL---LGIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHH---cCCCcEEEEEEchhccc
Confidence 88999999998877777778999999999999875322111 11121211 12245788999999975
No 192
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=6.1e-18 Score=117.85 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=89.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh--------HHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM--------RDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 72 (128)
.+|++++|.||||||||+|+|++ +.+..+..+|+++.....+..+|.. +.++||.|..+-... ....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 58999999999999999999998 4556677789999999999999988 899999995533332 23368
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.++|.+++|+|.+.+.+-....... ....+.|+++|.||.|+..+.
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhccccc
Confidence 8899999999999863222222111 235679999999999998753
No 193
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=103.66 Aligned_cols=120 Identities=24% Similarity=0.331 Sum_probs=85.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCC--------CCCC---ChhceeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVE--------KYDP---TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
|...||++.|+-++||||+++++....... .+.. ++...........+ ...+.++|+|||++|..+|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 456799999999999999999998754311 1111 11111122233333 23489999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
...+++.++++++|.+.+..+ .....+..+.. ...+|+++.+||.|+.+...
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~---~~~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS---RNPIPVVVAINKQDLFDALP 138 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhh---ccCCCEEEEeeccccCCCCC
Confidence 999999999999999999888 33333333322 11299999999999987643
No 194
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=112.87 Aligned_cols=116 Identities=23% Similarity=0.266 Sum_probs=87.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc------chhHhHH---hhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE------QFTAMRD---LYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~~~~~~---~~~~ 73 (128)
..+++.|.||||||||++.+.+.+ -...|..|+...+..++...+.. ++++||||.- ...-..+ ..-+
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R--~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR--IQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce--EEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 579999999999999999999844 34668888888888888877777 8999999921 1111111 1223
Q ss_pred CCcEEEEEEeCCC--hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 74 NGQGFILVYSITA--QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 74 ~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
-.++++|++|.+. ..+.+....++..+.. ....|+++|+||+|+.+..
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~---~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKE---LFKAPIVVVINKIDIADEE 296 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHH---hcCCCeEEEEecccccchh
Confidence 3578999999985 4567888888887766 3338999999999998543
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.77 E-value=1e-17 Score=122.44 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=82.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCCC-----C---------CCChhceeEEEEEE---CCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG--IFVEK-----Y---------DPTIEDSYRKQVEV---DGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~--~~~~~-----~---------~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~ 65 (128)
+++++|+.++|||||+.+|+.. .+... + ...+.......+.+ ++..+.+.+|||||+.+|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 8999999999999999999862 22111 0 01111111112222 4557889999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+...++.+|++++|+|+++....+....|.... ..++|+++|+||+|+.+.
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcc
Confidence 99999999999999999999876665554444322 247899999999999653
No 196
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.77 E-value=1.4e-17 Score=111.50 Aligned_cols=111 Identities=20% Similarity=0.205 Sum_probs=76.7
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCC-----------------CCCCChhceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVE-----------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+++|++|+|||||+++|+. +.... .....+.+.....+.+++ .++.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999974 21100 011111122223344444 458999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..+...++.+|++++|+|..+...-+. ...+..+ ...++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~----~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA----DRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCCCCC
Confidence 999999999999999999987533222 1222222 235789999999999975
No 197
>KOG0076|consensus
Probab=99.77 E-value=1.2e-18 Score=106.94 Aligned_cols=120 Identities=19% Similarity=0.325 Sum_probs=96.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhc---CCCCC---CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ---GIFVE---KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (128)
.+.++|+|..++|||||+.+... +.+.. ....++..-...++..+... +.+||..|++..+.+|..+|..+|
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAP--LSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccce--eEEEEcCChHHHHHHHHHHHHHhc
Confidence 46789999999999999998864 22221 11112222334455556555 889999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 77 GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++++++|.++++.|+.....+..+...-...+.|+++.+||.|+.+..
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~ 142 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM 142 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh
Confidence 999999999999999999888888886677899999999999997754
No 198
>KOG0096|consensus
Probab=99.77 E-value=2.7e-18 Score=106.73 Aligned_cols=120 Identities=28% Similarity=0.571 Sum_probs=103.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEE-EEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.++++++|..|.||+|+.++.+.+.+...+.++..-..... +..+...++|..||+.|++.+-.....++-...+++++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 58999999999999999999999999888888776333333 33333458999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||+..+-+..++..|...+.. .+.++|+++.+||.|..+..
T Consensus 90 FdVtsr~t~~n~~rwhrd~~r--v~~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVR--VRENIPIVLCGNKVDIKARK 130 (216)
T ss_pred eeeeehhhhhcchHHHHHHHH--HhcCCCeeeeccceeccccc
Confidence 999999999999999999988 46779999999999997643
No 199
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.3e-17 Score=124.26 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=81.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-hhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+...|+++|+.++|||||+++|....+.....+. +.......+.+.+ ..+.+|||||+..|..++...+..+|++++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 3468999999999999999999876554332221 1122223344444 358999999999999999988999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+|+++...-+....+ .. ....++|+++++||+|+.+
T Consensus 367 VVdAddGv~~qT~e~i-~~----a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-NH----AKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEECCCCCCHhHHHHH-HH----HHhcCCcEEEEEECccccc
Confidence 9999874322222111 11 2345799999999999965
No 200
>KOG0077|consensus
Probab=99.77 E-value=4.1e-18 Score=103.90 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=95.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC---CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
=|++++|-.|+|||||++.|.+.... +...||++ +..+.+.. |+.+|.+|+.+-+..|..++..++++++
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE-----~l~Ig~m~--ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-----ELSIGGMT--FTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ceEEEEeecCCchhhHHHHHccccccccCCCcCCChH-----HheecCce--EEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 48999999999999999999985443 33333333 23345555 9999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+|+.+.+.|.+....+..+.......++|+++.+||+|++..
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 9999999999999998888888666789999999999999764
No 201
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=2.3e-17 Score=105.72 Aligned_cols=114 Identities=19% Similarity=0.156 Sum_probs=76.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC--CC-C--------------CCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI--FV-E--------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~--~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++++++|+.++|||||+++|+... .. . .....+.+. ....+.....++.++||||+..|
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINT--AHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEe--eeeEecCCCeEEEEEECcCHHHH
Confidence 46899999999999999999998520 00 0 011111121 22333344456899999999998
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
.......+..+|++++|+|+.....-+. ...+..+. ..++| +++++||+|+..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLAR----QVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHH----HcCCCcEEEEEeCCCCCC
Confidence 8888888999999999999986532221 12222222 24566 789999999964
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.76 E-value=2.8e-17 Score=119.93 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=82.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc--CCCCCCCC-------------CChhceeEEEEEECCcEEEEEEEeCCCccchhHhH
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ--GIFVEKYD-------------PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR 68 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 68 (128)
-+|+++|+.++|||||+++++. +.+..... ............+....+.+.+||+||+.+|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 4899999999999999999996 33322211 00112222333444556679999999999999999
Q ss_pred HhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 69 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...++.+|++++|+|+.+....+. ..++..+.. .++|.++++||+|+.+.+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 999999999999999987543332 222333322 478999999999997543
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.76 E-value=9.5e-18 Score=118.76 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
++++++++|+.++|||||+++|+.. ..... ...++.+.... .+...
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~~~~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KFETD 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EEecC
Confidence 4689999999999999999999842 11100 11122222222 33344
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
...+.+||+||++.|.......+..+|++++|+|+++...+.....+...+.. .....|+++++||+|+.+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~--~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR--TLGINQLIVAINKMDAVN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH--HcCCCeEEEEEEcccccc
Confidence 55699999999988876666667889999999999873222121112222222 122247999999999975
No 204
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.76 E-value=2.6e-17 Score=105.30 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=70.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc----------chhHhHHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAMRDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~ 72 (128)
.++++++|++|+|||||++++.+..+.....++........+...+ ..+.+||+||.. .+......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 3689999999999999999999865433333333222111211112 459999999942 3333334444
Q ss_pred cC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+. .+++++++|...+.+..... ....+ ...+.|+++++||+|+.+.
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l----~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDLQ-MIEWL----KEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHHH-HHHHH----HHcCCcEEEEEECcccCCH
Confidence 43 46788888887654433211 11112 2347899999999999764
No 205
>KOG1673|consensus
Probab=99.75 E-value=4.7e-18 Score=102.77 Aligned_cols=116 Identities=28% Similarity=0.538 Sum_probs=100.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+|+.++|++..|||||+-+..++.+.+++..+.. +...+++...+..+.|.+||.+|++++..+.+..-.++-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 47999999999999999999998777655555443 77788899999999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
||.+.++++.++..|++..+.. ...-+| |+|+||.|.
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~ 136 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDL 136 (205)
T ss_pred EecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHh
Confidence 9999999999999999999883 333345 578999987
No 206
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.75 E-value=4.4e-17 Score=109.16 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=77.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCC-----CCC--------------hhceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKY-----DPT--------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+++|++|+|||||+++++........ ..+ +.......+.+++ ..+.+||+||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999753211000 000 0011122333344 458999999999888
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
......++.+|++++|+|.++......... +..+. ..++|.++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKL-WEFAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHH----HcCCCEEEEEECCccCCC
Confidence 888889999999999999998655443332 22222 347899999999999764
No 207
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=4.1e-17 Score=121.60 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=76.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc--------hhHhHHhhcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLYMK 73 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (128)
.+|+++|.+|||||||+|++.+... ......++.+.........+.. +.+|||||.+. +.......++
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 5799999999999999999998543 2223333334444444445554 88999999653 3344455789
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+|++++|+|.++...... ..+...+ ...++|+++|+||+|+.+
T Consensus 354 ~aD~iL~VvDa~~~~~~~d-~~i~~~L----r~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTD-ERIVRML----RRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHH----HhcCCCEEEEEECccccc
Confidence 9999999999986422111 1122222 236899999999999865
No 208
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.75 E-value=1.5e-17 Score=111.65 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=70.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCC----------CCCh-hceeEEEEEECCcEEEEEEEeCCCccchh------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY----------DPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFT------ 65 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------ 65 (128)
.++|+++|.+|+|||||+|++++..+.... .++. .......+..++..+.+.+|||||-....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 589999999999999999999986543321 1121 13333445556777889999999932211
Q ss_pred ------------Hh---HH-----hhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 ------------AM---RD-----LYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ------------~~---~~-----~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.. .. ..+. ++|+++++++.+.. .+.. +...+..... ..+|+++|+||+|+..+
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~---~D~~~lk~l~-~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKP---LDIEFMKRLS-KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCH---HHHHHHHHHh-ccCCEEEEEECCCcCCH
Confidence 10 01 1222 36677777776642 1111 1111111122 26899999999999764
Q ss_pred c
Q psy784 124 R 124 (128)
Q Consensus 124 ~ 124 (128)
.
T Consensus 159 ~ 159 (276)
T cd01850 159 E 159 (276)
T ss_pred H
Confidence 3
No 209
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=1.4e-17 Score=102.30 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=76.6
Q ss_pred EECCCCCChHHHHHHHhcCCCC-C-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH-------hHHhhccCCcEE
Q psy784 8 VLGSGGVGKSALTVQFVQGIFV-E-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNGQGF 78 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~~~ 78 (128)
++|++|+|||||++++.+.... . ...++............. ...+.+||+||...+.. .....++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999975432 1 222333333333443331 34599999999765543 334578899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++|+|..+..+..... +... ....+.|+++++||+|+....
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~----~~~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLEL----LRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHH----HHhcCCeEEEEEEccccCChh
Confidence 9999999887665554 2222 234689999999999997654
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=3.4e-17 Score=119.17 Aligned_cols=113 Identities=23% Similarity=0.219 Sum_probs=78.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-hhc--eeEEEEEE--------------CCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IED--SYRKQVEV--------------DGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-~~~--~~~~~~~~--------------~~~~~~~~~~D~~g~~~~ 64 (128)
+..-|+++|++++|||||+++|.+..+.....+. +.. ........ ......+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4457999999999999999999986554332221 110 00111110 000113889999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..++...++.+|++++|+|+++ +.+++.+. .+ ...++|+++++||+|+.+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l----~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----IL----RMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HH----HHcCCCEEEEEECCCccc
Confidence 9999999999999999999997 34444332 11 124789999999999964
No 211
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.75 E-value=1.8e-17 Score=103.05 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=66.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-----chhHhHHhhccCCcEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-----QFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i 79 (128)
+|+++|.+|+|||||+|+|.+... . .. ....+.+... .+||+||.. .+..+. ..++++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-AR------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Cc------cceEEEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEEE
Confidence 799999999999999999876421 1 11 1122233333 269999973 222222 2378999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|+|.++..++.. .|...+ ..+.|+++++||+|+.+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD 105 (158)
T ss_pred EEEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCc
Confidence 9999998876633 222221 24679999999999965
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.75 E-value=3.8e-17 Score=119.21 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=81.1
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCCCCC-------------hhceeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPT-------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
+|+++|+.++|||||+++|+. +.+....... ..........+....+.+.+|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999986 3332211000 0112222223333445699999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..++.+|++++|+|+.+.. ......++..+.. .++|+++++||+|+.+.+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcC
Confidence 9999999999999998743 3333444554443 578999999999997543
No 213
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=3.8e-17 Score=119.24 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=79.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC---CCCCCCC-ChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI---FVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+.|+++|+.++|||||+++|.+.. ++.+... .+.+.....+...+ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999998632 2222221 22233333455555 56999999999999988888899999999
Q ss_pred EEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCCc
Q psy784 80 LVYSITAQ---STFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER 124 (128)
Q Consensus 80 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 124 (128)
+|+|+++. .+.+.+. .+ . ..++| +++++||+|+.+++
T Consensus 79 LVVDa~~G~~~qT~ehl~----il-~---~lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VL-D---LLGIPHTIVVITKADRVNEE 119 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HH-H---HcCCCeEEEEEECCCCCCHH
Confidence 99999983 3433332 11 1 23677 99999999997644
No 214
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.75 E-value=8.7e-17 Score=105.71 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=61.3
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh-------HhHHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-------AMRDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 76 (128)
+++++|++|+|||||+++|.+.. ....+..++.+.....+.+++.. +++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAK--IQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeE--EEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 68999999999999999999854 23344455555556666676655 8999999964322 22345789999
Q ss_pred EEEEEEeCCChh
Q psy784 77 GFILVYSITAQS 88 (128)
Q Consensus 77 ~~i~v~d~~~~~ 88 (128)
++++|+|+++++
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998755
No 215
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.75 E-value=1.9e-17 Score=117.32 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=77.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
++++++++|+.++|||||+++|+. +..... ....+.+.. ...+...
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~~~ 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFETD 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEccC
Confidence 468999999999999999999985 222110 001111221 2233444
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
...+.+||+||++.|.......+..+|++++|+|+++.+++..... +...+.. .....|+++++||+|+.+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~--~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR--TLGINQLIVAINKMDSVN 155 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH--HcCCCeEEEEEEChhccC
Confidence 5669999999999887777777889999999999998754321111 1111222 123358999999999964
No 216
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=3.1e-17 Score=107.15 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=75.5
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCC--CChhceeEEEEEECCcEEEEEEEeCCCccchhH-----hHHhhccCCcE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-----MRDLYMKNGQG 77 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 77 (128)
||+++|+.++||||+.+.++.+-.+.+.. ..+.+.....+.+. ..+.+.+||.||+..+.. .....++++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999988777653332221 12223333344333 334699999999875544 35778999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHhh-hCCCCCcEEEEEecCCCCCC
Q psy784 78 FILVYSITAQSTFNDLSDLREQILRV-KDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|+|+|+.+.+..+.+.++...+... ...++..+.++++|+|+..+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 99999999655555555444444432 24678999999999999754
No 217
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=4.4e-17 Score=113.33 Aligned_cols=114 Identities=29% Similarity=0.383 Sum_probs=89.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc----------chhHh-HH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAM-RD 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~ 69 (128)
.+|++++|.||+|||||+|+|++ +.......+|+++.....+.++++. +.++||.|-. .|... ..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhhH
Confidence 58999999999999999999998 4455666788889999999999998 8899999932 22222 23
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+..++++++|+|.+.+-+-+... +..+....+.++++++||.|+.++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCCeEEEEEccccCCc
Confidence 3678899999999999865554433 233334568999999999999875
No 218
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.73 E-value=8.5e-17 Score=103.80 Aligned_cols=117 Identities=17% Similarity=0.096 Sum_probs=71.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCC--CCCChhceeEEEEEEC---------------------------C----
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEK--YDPTIEDSYRKQVEVD---------------------------G---- 48 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~--~~~~~~~~~~~~~~~~---------------------------~---- 48 (128)
++++++|+.|+|||||+.++.+... .+. ....+...-...+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975311 010 0000000000000000 1
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
....+.+||+||++.+.......+..+|++++|+|+.++.........+..+.. ....|+++++||+|+.++
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI---MGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH---cCCCcEEEEEEchhccCH
Confidence 114689999999999888888888899999999999973111111111222222 223579999999999753
No 219
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.72 E-value=7.2e-17 Score=116.42 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=77.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc--CCCCC--C-----------CCCChh------ceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ--GIFVE--K-----------YDPTIE------DSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~--~~~~~--~-----------~~~~~~------~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
-+++++|+.++|||||.++|+. +.... . .+.... ........+....+.+.+|||||+.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 4899999999999999999974 21110 0 000000 1111122233344569999999999
Q ss_pred chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|.......++.+|++++|+|..+...- ....++.. ....++|+++++||+|+...
T Consensus 91 df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 91 DFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred hhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCccccc
Confidence 9998888889999999999999875322 22233332 23468999999999999753
No 220
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.71 E-value=3.4e-16 Score=100.48 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=72.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCC--CCChhceeEEEEEECCcEEEEEEEeCCCccchhH----h-------HH
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKY--DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----M-------RD 69 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~-------~~ 69 (128)
++|+++|.+|+||||++|+|++.... ... .+.+...........+.. +.++||||-.+... . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999985432 221 123333334444555655 89999999543311 1 11
Q ss_pred hhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 70 LYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...++.|++++|+++.+.. ....+..++..+.. .....++++++|+.|.....
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFG--EKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhC--hHhHhcEEEEEECccccCCC
Confidence 2346789999999988621 12222222222211 12235899999999987643
No 221
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=2.6e-16 Score=110.97 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=76.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCC--CC---------------CCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFV--EK---------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++++++|+.++|||||+++|++.... .. ....+.+. ....+.....++.++|+||+..|
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHHH
Confidence 4689999999999999999999863110 00 01111111 12233334445889999999988
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (128)
.......+..+|++++|+|+.....-+... .+..+ ...++| +++++||+|+.+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~----~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLA----KQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHH----HHcCCCEEEEEEEccCCCCH
Confidence 888888889999999999998653222211 12222 234678 7789999999763
No 222
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.71 E-value=3.6e-16 Score=114.12 Aligned_cols=112 Identities=27% Similarity=0.294 Sum_probs=76.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh---ceeEEEEEE----CCcE-----E-----EEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEV----DGQQ-----C-----MLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~-----~-----~~~~~D~~g~~~~ 64 (128)
+...|+++|+.++|||||+++|.+............ ......... .+.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 456899999999999999999987543322221110 000000000 0110 1 2689999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
...+...+..+|++++|+|+++ +.+++.+.. + ...++|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~----~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----L----KRRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----H----HHcCCCEEEEEECcCCc
Confidence 9999888899999999999997 455544421 1 12478999999999985
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2e-16 Score=114.50 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=88.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc-CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-------chhHhHHhhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ-GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-------QFTAMRDLYM 72 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~ 72 (128)
|+..+++++|+|||||||++|++.+ +....++...+-+.....+...+.. ++++|.||-. +..-.++..+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 6788999999999999999999998 5555677777777778888888887 8999999933 3333333344
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 73 -KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
.+.|+++-|+|.++.+..-.+...+. +.+.|+++++|++|..+++.+
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLl-------E~g~p~ilaLNm~D~A~~~Gi 126 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLL-------ELGIPMILALNMIDEAKKRGI 126 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHH-------HcCCCeEEEeccHhhHHhcCC
Confidence 45699999999998765444332222 348899999999999876544
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.70 E-value=2.5e-16 Score=102.72 Aligned_cols=112 Identities=20% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCC--------------C----------------CCCChhceeEEEEEECCcEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVE--------------K----------------YDPTIEDSYRKQVEVDGQQCM 52 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~--------------~----------------~~~~~~~~~~~~~~~~~~~~~ 52 (128)
+|+++|+.++|||||+.+|+. +.... . ...++.+.....+...+ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 489999999999999999974 11110 0 01111122223344444 45
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhH---H---HHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST---F---NDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+.+||+||+..|.......+..+|++++|+|+++... | ......+.... .....|+++++||+|+.
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR---TLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH---HcCCCeEEEEEEccccc
Confidence 9999999998888777777888999999999998421 1 11112222221 22346899999999997
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=3.2e-16 Score=110.03 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=76.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC-----------------CCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE-----------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++++++|+.++|||||+++|++..... .....+.+. ....+......+.++|+||++.|
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHH
Confidence 46899999999999999999998621000 011111122 22333334445899999999988
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (128)
..........+|++++|+|+.....-+... .+..+. ..++| +++++||+|+.++
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~----~~g~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLAR----QVGVPYLVVFLNKVDLVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHH----HcCCCEEEEEEEecCCcch
Confidence 877777788899999999998643222211 122222 23677 6789999999743
No 226
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=1.5e-16 Score=118.43 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=81.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCC--C---------C------CCChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVE--K---------Y------DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~--~---------~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
..+|+++|+.++|||||+++|+... ... . + ...+.......+.+. ...+.+|||||+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~d 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHID 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcHH
Confidence 3589999999999999999998521 100 0 0 000111112233333 45699999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.......++.+|++++|+|.++..+.+....| ..+. ..++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEEEECCCCCCC
Confidence 999999999999999999999987766554433 3232 347899999999999764
No 227
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.70 E-value=1.4e-16 Score=116.36 Aligned_cols=107 Identities=22% Similarity=0.257 Sum_probs=73.6
Q ss_pred CCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh------HHhh--ccCCcEEEE
Q psy784 10 GSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM------RDLY--MKNGQGFIL 80 (128)
Q Consensus 10 G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~--~~~~~~~i~ 80 (128)
|++|||||||+|++.+... ..++..++.+.....+..++.. +.+||+||+.++... ...+ .+.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998654 2334444445555566666655 899999998876543 2223 347899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|+|.++.+... .+...+. ..++|+++++||+|+.+++.
T Consensus 79 VvDat~ler~l---~l~~ql~----~~~~PiIIVlNK~Dl~~~~~ 116 (591)
T TIGR00437 79 VVDASNLERNL---YLTLQLL----ELGIPMILALNLVDEAEKKG 116 (591)
T ss_pred EecCCcchhhH---HHHHHHH----hcCCCEEEEEehhHHHHhCC
Confidence 99998754322 2222222 25799999999999976543
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.70 E-value=1.6e-16 Score=102.05 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=65.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh----ceeEEEEEECCcEEEEEEEeCCCccchhH-----hHHhhcc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE----DSYRKQVEVDGQQCMLEILDTAGTEQFTA-----MRDLYMK 73 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~ 73 (128)
++||+++|.+|+|||||+|+|.+.........+.. ......+. ......+.+||+||...... .....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47999999999999999999998443221111111 00011111 11122489999999653221 2233367
Q ss_pred CCcEEEEEEeCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 74 NGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++|+++++.+- ++.+... ++..+.. .+.|+++|+||+|+..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDL 121 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchh
Confidence 78888887432 2333332 2333322 3689999999999953
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=5.6e-16 Score=108.84 Aligned_cols=116 Identities=19% Similarity=0.185 Sum_probs=75.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCC---CC------CCCCChh------ceeEEEEEECCcEEEEEEEeCCCccchhH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIF---VE------KYDPTIE------DSYRKQVEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~---~~------~~~~~~~------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
++++++++|+.++|||||+++|++... .. ..+.+.. ........+.....++.++|+||++.|..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 568999999999999999999985100 00 0001110 11112223333444589999999998887
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEE-EEEecCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEE 122 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~ 122 (128)
.....+..+|++++|+|+.+...-+.. ..+..+ ...++|.+ +++||+|+.+
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~----~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMPQTR-EHILLA----RQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchhHH-HHHHHH----HHcCCCeEEEEEEecCCcc
Confidence 777778899999999999874322211 122222 23467865 5799999974
No 230
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.69 E-value=7.7e-16 Score=114.56 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=79.0
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCC--C-C--------------CCCChhceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFV--E-K--------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~--~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+++|+.++|||||+++|+. +... . . ...++.+.....+.+++ .++.+|||||+..+.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVDFT 89 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcchh
Confidence 899999999999999999974 2110 0 0 01111122233444444 458999999999998
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
......++.+|++++|+|..+....+... .+..+. ..++|+++++||+|+...
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~----~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQAN----RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHH----HcCCCEEEEEECCCCCCC
Confidence 88888999999999999999865544332 222222 346899999999999753
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=3.8e-16 Score=112.77 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=77.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCC--CC--CC----C-----h------hceeEEEEEECCcEEEEEEEeCCCc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVE--KY--DP----T-----I------EDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~--~~--~~----~-----~------~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
.-+++++|+.++|||||+++|+. +.... .. .. + . .........+......+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 34899999999999999999864 21110 00 00 0 0 0111222334445566999999999
Q ss_pred cchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..|.......++.+|++++|+|..+... .....++... ...++|+++++||+|+..
T Consensus 91 ~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~----~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 91 EDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT----RLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH----HhcCCCEEEEEECccccC
Confidence 9998878888999999999999987421 1222333322 235789999999999964
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.69 E-value=6.2e-16 Score=108.62 Aligned_cols=115 Identities=21% Similarity=0.188 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC-----C--C-----C-----CCCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG-----I--F-----V-----EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~-----~--~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++++++|+.++|||||+++|++. . . . +.....+.+. ..+.+......+.+||+||++.|
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHHH
Confidence 5789999999999999999999732 0 0 0 0011112222 23344444556899999999998
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEE-EEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~ 123 (128)
..........+|++++|+|+......+... .+..+. ..++|.+ +++||+|+.++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~----~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLAR----QVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH----HcCCCEEEEEEEecccCCH
Confidence 877766778899999999998743222221 122222 2356755 68999999753
No 233
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.69 E-value=2.9e-16 Score=107.34 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=62.7
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
.+.+.+||++|+...+..|.+++.++++++||+|.++. ..+++....+..+.......++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 45588999999999999999999999999999999974 45667777777777755567899999999999
Q ss_pred CCCC
Q psy784 120 LEEE 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+..+
T Consensus 240 ~f~~ 243 (317)
T cd00066 240 LFEE 243 (317)
T ss_pred HHHH
Confidence 8654
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.69 E-value=6e-16 Score=110.54 Aligned_cols=117 Identities=22% Similarity=0.200 Sum_probs=76.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC--C----CCCC---CCChh------ceeEEEEEECCcEEEEEEEeCCCccchhH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI--F----VEKY---DPTIE------DSYRKQVEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~--~----~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
++++++++|+.++|||||+++|+... . ...+ +.+.. ........+......+.++|+||++.|..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence 46899999999999999999998521 1 0000 00111 11111122223334589999999999988
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 123 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (128)
.....+..+|++++|+|+.+...-+.. ..+..+. ..++| +++++||+|+.+.
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~----~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPMPQTK-EHILLAK----QVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH----HcCCCeEEEEEecccccCH
Confidence 888888899999999999875433222 2222222 34677 7889999999753
No 235
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.68 E-value=6.2e-16 Score=108.94 Aligned_cols=120 Identities=18% Similarity=0.063 Sum_probs=75.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCC---CC-CCCChhcee----E----------EEEEE----CC------cEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFV---EK-YDPTIEDSY----R----------KQVEV----DG------QQCM 52 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~---~~-~~~~~~~~~----~----------~~~~~----~~------~~~~ 52 (128)
+++++|+++|..++|||||+++|.+.... ++ .+..+...- . ..++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 47899999999999999999999753110 00 000000000 0 00001 01 1346
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+||+||+++|..........+|++++|+|+++.....+....+..+.. ....|+++++||+|+.+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~---~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI---IGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH---cCCCeEEEEEEccccCCH
Confidence 89999999999998888888899999999999964311111111222211 223579999999999754
No 236
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.4e-15 Score=108.09 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=75.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC------CCC-----------CCCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG------IFV-----------EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++|+++|+.++|||||+++|.+. ... +.....+.+. ....+.....++.++|+||+..|
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccch
Confidence 4689999999999999999999731 100 0011122222 22334444456899999999988
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (128)
..........+|++++|+|..+...-+.. ..+.. ....++| +++++||+|+.++
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt~-e~l~~----~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILL----ARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHH----HHHcCCCeEEEEEEeeccCCH
Confidence 77777777789999999999865322211 11111 2234688 5788999999753
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.66 E-value=3.2e-15 Score=92.88 Aligned_cols=109 Identities=20% Similarity=0.276 Sum_probs=66.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccc----------hhHhHHhhcc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDLYMK 73 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 73 (128)
.|+++|++|+|||||++++.++...+...++.. ......+..++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999996443333333322 22222222222 589999999433 2333333333
Q ss_pred ---CCcEEEEEEeCCChhHH--HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 74 ---NGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 74 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+++++++|.....+. ..+..+.. ..+.|+++++||+|+...
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~-------~~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE-------ELGIPFLVVLTKADKLKK 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH-------HcCCCEEEEEEchhcCCh
Confidence 45688889998865322 22222222 235899999999999643
No 238
>PRK12739 elongation factor G; Reviewed
Probab=99.66 E-value=3.6e-15 Score=111.05 Aligned_cols=113 Identities=19% Similarity=0.160 Sum_probs=79.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC--CCCC-----------------CCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG--IFVE-----------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
.+|+++|+.++|||||+++|+.. .... .....+.+.....+.+++. ++.++||||+..+
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~--~i~liDTPG~~~f 86 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGH--RINIIDTPGHVDF 86 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCE--EEEEEcCCCHHHH
Confidence 47999999999999999999752 1100 0111222333334444444 4899999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.......++.+|++++|+|..+...-+.. ..+..+ ...++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~----~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQA----DKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHH----HHcCCCEEEEEECCCCCCC
Confidence 88888899999999999999876433322 222222 2357899999999999753
No 239
>KOG1489|consensus
Probab=99.66 E-value=7.7e-16 Score=102.89 Aligned_cols=117 Identities=22% Similarity=0.285 Sum_probs=89.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhH-------HhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR-------DLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~~ 76 (128)
.+-++|.||+|||||+++|.+.+ -...|..|+-.+....+.+++-. ++.+-|.||.-+-..+. ...+++++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46789999999999999999844 34567777665555555554433 49999999944333222 23478899
Q ss_pred EEEEEEeCCCh---hHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCC
Q psy784 77 GFILVYSITAQ---STFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 122 (128)
..+||+|++.. ..|+.+..++.++..+.. ....|.++|+||+|+++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 99999999998 889999988888887643 45789999999999954
No 240
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.65 E-value=8.6e-15 Score=96.95 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH---h-------HH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA---M-------RD 69 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~~ 69 (128)
..++|+++|.+|||||||+|+|++..... ...+++..........++. .+.++||||-..... . ..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35899999999999999999999854322 2222333333333344454 489999999654421 1 11
Q ss_pred hhc--cCCcEEEEEEeCCCh-hHHH--HHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LYM--KNGQGFILVYSITAQ-STFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~~--~~~~~~i~v~d~~~~-~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.++ ...+++++|..++.. .+.. .+...+..... ..--.++++|.||+|...+..
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG--~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG--PSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC--hhhHhCEEEEEeCCccCCCCC
Confidence 122 257888888766542 1222 23323332222 111247999999999976543
No 241
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=94.83 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=71.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhcee-EEEEEECCcEEEEEEEeCCC----------ccchhHhHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAG----------TEQFTAMRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 72 (128)
.-|+++|.+|||||||+|+|++++--.....|+..+. -..+.+++. +.++|.|| .+........++
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 4789999999999999999999553333334443222 333444444 78999999 222223333344
Q ss_pred cC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+. -.++++++|......-.+. ++..+....++|+++++||+|.....
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~D~-----em~~~l~~~~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDLDR-----EMIEFLLELGIPVIVVLTKADKLKKS 151 (200)
T ss_pred hhchhheEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEccccCChh
Confidence 33 3566778888765433222 22222335789999999999998754
No 242
>PRK00049 elongation factor Tu; Reviewed
Probab=99.64 E-value=5.2e-15 Score=103.97 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=76.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCC---CCC--------------CCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIF---VEK--------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++++++++|+.++|||||+++|+.... ... ....+.+. ....+.....++.++|+||+..|
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHHH
Confidence 568999999999999999999986210 000 11111121 22333334445889999999988
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEE-EEEecCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEE 122 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~ 122 (128)
.......+..+|++++|+|......-+. ...+..+. ..++|.+ +++||+|+.+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~----~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR----QVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHH----HcCCCEEEEEEeecCCcc
Confidence 8777778899999999999987532221 12222222 3467876 6899999974
No 243
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.64 E-value=1.4e-15 Score=104.87 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=62.3
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
..+.+||++|+...+..|.+++.++++++||+|.++. ..+++....+..+.......++|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 3488999999999999999999999999999999973 457777777777777556678999999999999
Q ss_pred CCC
Q psy784 121 EEE 123 (128)
Q Consensus 121 ~~~ 123 (128)
..+
T Consensus 264 ~~~ 266 (342)
T smart00275 264 FEE 266 (342)
T ss_pred HHH
Confidence 653
No 244
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.64 E-value=6.5e-15 Score=96.29 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=71.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCC---------------Chh---------ceeE---------------EEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDP---------------TIE---------DSYR---------------KQVE 45 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~---------------~~~---------~~~~---------------~~~~ 45 (128)
|++++|+.++|||||++++..+.+.+.... .+. +... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986544221100 000 0000 0111
Q ss_pred ECCcEEEEEEEeCCCccchhHhHHhhcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 46 VDGQQCMLEILDTAGTEQFTAMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 46 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.. ...+.++|+||++.|.......+. .+|++++|+|+.....-.. ..++..+ ...++|+++++||+|+.++
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l----~~~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLA----LALNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHH----HHcCCCEEEEEECccccCH
Confidence 12 234899999999988766655554 6899999999886543221 1122222 2356899999999999654
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=5.8e-15 Score=105.69 Aligned_cols=117 Identities=19% Similarity=0.056 Sum_probs=73.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCC----------CCCh--------------h------ceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKY----------DPTI--------------E------DSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~----------~~~~--------------~------~~~~~~~~~~~~ 49 (128)
+.++++++|+.++|||||+++|+.. ...... ..+. . ........+...
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4689999999999999999999852 211100 0000 0 001111222333
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..++.++||||++.|.......+..+|++++|+|+.....-+....+ ..+.. . ...|+++++||+|+.+
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~-l--g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATL-L--GIKHLVVAVNKMDLVD 174 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHH-h--CCCceEEEEEeecccc
Confidence 44689999999998877666667999999999999865322111111 11111 1 1247999999999974
No 246
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=3.4e-15 Score=105.23 Aligned_cols=113 Identities=19% Similarity=0.094 Sum_probs=73.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcC--CCCCC-----------CC-------------CC--------hhceeEEEEEECCc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG--IFVEK-----------YD-------------PT--------IEDSYRKQVEVDGQ 49 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~--~~~~~-----------~~-------------~~--------~~~~~~~~~~~~~~ 49 (128)
++++++|+.++|||||+++|+.. ..... .. .. +.+.... .+...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~--~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYR--YFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeE--EEccC
Confidence 58999999999999999999742 11110 00 00 0111112 22233
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..++.++|+||++.|.......+..+|++++|+|+.....-+....+ ..+.. ....++++++||+|+.+
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~---~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASL---LGIRHVVLAVNKMDLVD 147 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHH---cCCCcEEEEEEeccccc
Confidence 44689999999999987777788999999999999865332221111 11111 12346899999999975
No 247
>PRK00007 elongation factor G; Reviewed
Probab=99.64 E-value=9.3e-15 Score=108.84 Aligned_cols=113 Identities=19% Similarity=0.162 Sum_probs=78.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc--CCCCC-----------------CCCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ--GIFVE-----------------KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
-+|+++|+.++|||||+++|+. +.... .....+.+.....+.+.+. .+.++||||+..|
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~--~~~liDTPG~~~f 88 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDH--RINIIDTPGHVDF 88 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCe--EEEEEeCCCcHHH
Confidence 3899999999999999999974 21100 0111222232334444544 4899999999988
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.......++.+|++++|+|......-+....+. .+. ..++|.++++||+|+.+.
T Consensus 89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~----~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QAD----KYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHH----HcCCCEEEEEECCCCCCC
Confidence 887788899999999999988764444333222 222 357899999999999753
No 248
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.64 E-value=4e-15 Score=104.97 Aligned_cols=118 Identities=18% Similarity=0.063 Sum_probs=72.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCC--CCC--CCCChhceeE--------------EEEEE----C--C----cEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIF--VEK--YDPTIEDSYR--------------KQVEV----D--G----QQCML 53 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~--~~~--~~~~~~~~~~--------------~~~~~----~--~----~~~~~ 53 (128)
++++++++|+.++|||||+.+|.+... .++ ....+..... ..+.. + + ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999965211 111 0111100000 00000 0 1 12468
Q ss_pred EEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 54 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+||+||++.|..........+|++++|+|+.++. .-+... .+..+.. ....|+++|+||+|+.++
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~---~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDI---IGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHH---cCCCcEEEEEEeeccccc
Confidence 99999999988877666677789999999999642 111111 1111211 223479999999999764
No 249
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.63 E-value=2.2e-14 Score=96.86 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=69.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHh---hc----
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL---YM---- 72 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---~~---- 72 (128)
..++|+++|.+|+||||++|+|++.... ....+.............+. .+.++||||..+....... .+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~--~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGF--TLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCe--EEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 4689999999999999999999985431 12222222222222333444 4899999996654322211 11
Q ss_pred --cCCcEEEEEEeCCC--hhHH-HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 --KNGQGFILVYSITA--QSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 --~~~~~~i~v~d~~~--~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
...|++++|..++. .... ..+...+..++. ..--.+.|+++|+.|..+.
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCCC
Confidence 25899999965542 2212 223333333322 1223579999999998754
No 250
>KOG1423|consensus
Probab=99.63 E-value=3.1e-15 Score=99.70 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=75.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc------------hhHhHHh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ------------FTAMRDL 70 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------------~~~~~~~ 70 (128)
.++++++|.+|+|||||.|.+.+.+..+..+-+........-.+.....++.++||||... +......
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~ 151 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRD 151 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHH
Confidence 4789999999999999999999976554433322222233323344445699999999321 1112234
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
....+|++++++|+++......- ..+..+. ...++|=++|.||+|...++
T Consensus 152 a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~---~ys~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 152 AAQNADCVVVVVDASATRTPLHP-RVLHMLE---EYSKIPSILVMNKIDKLKQK 201 (379)
T ss_pred HHhhCCEEEEEEeccCCcCccCh-HHHHHHH---HHhcCCceeeccchhcchhh
Confidence 57779999999999963221111 1111122 23578999999999987654
No 251
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=2.3e-15 Score=99.05 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=79.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCC-CC-ChhceeEEEEEECCcEEEEEEEeCCCccc-------hhHhHHhhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKY-DP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYM 72 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 72 (128)
++++++++|.+|+||||++|+|+.+...+.. .+ +..........++++. +.+||+||-.+ ++......+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4678999999999999999999975443322 11 2222212223345554 89999999665 666667788
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+.|.++++.+..++.---. .+++..+.. ..-+.++++++|.+|+...
T Consensus 116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~--~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTD-EDFLRDVII--LGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred hhccEEEEeccCCCccccCC-HHHHHHHHH--hccCceeEEEEehhhhhcc
Confidence 89999999999998743222 223333333 2334899999999998654
No 252
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.62 E-value=3.3e-15 Score=111.58 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=77.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC---------------CCCCC--CC-Chh-ceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI---------------FVEKY--DP-TIE-DSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~---------------~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
-+|+++|+.++|||||+++|+... +.+.+ .. |.. ........+++..+.+.+|||||+..|
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 389999999999999999997521 11100 00 111 111122234566778999999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.......++.+|++++|+|.......+.... +..+ ...++|.++++||+|+..
T Consensus 100 ~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~----~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQA----LKENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHH----HHcCCCEEEEEEChhccc
Confidence 8888889999999999999987533322222 2222 234678899999999964
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.61 E-value=9.4e-15 Score=107.95 Aligned_cols=115 Identities=19% Similarity=0.093 Sum_probs=73.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC----------CCCCh----------------------hceeEEEEEEC
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK----------YDPTI----------------------EDSYRKQVEVD 47 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~----------~~~~~----------------------~~~~~~~~~~~ 47 (128)
+.++++++|++++|||||+++|+.. ..... ...++ .+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4689999999999999999999862 22110 01110 01111122223
Q ss_pred CcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 48 GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 48 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..++.++|+||++.|..........+|++++|+|+.....-+.... +..+.. ....|+++++||+|+.+
T Consensus 103 --~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~---~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 103 --KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASL---LGIRHVVLAVNKMDLVD 171 (632)
T ss_pred --CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHH---hCCCeEEEEEEeccccc
Confidence 3358899999999887766667889999999999986532221111 111211 12357899999999974
No 254
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.61 E-value=5.4e-15 Score=89.55 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=64.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc----chhHhHHhhccCCcEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE----QFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~ 80 (128)
|++++|+.|||||||+++|.+....... | ..+.+.+ .++||||.. .+..-.-....+++++++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--T------q~i~~~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--T------QAIEYYD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--c------ceeEecc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 7899999999999999999985543221 1 1122222 349999943 333333334568999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|.|.+++.+.-.-. + ....+.|+|-|+||+|+.
T Consensus 70 l~dat~~~~~~pP~-----f---a~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 70 LQDATEPRSVFPPG-----F---ASMFNKPVIGVITKIDLP 102 (143)
T ss_pred EecCCCCCccCCch-----h---hcccCCCEEEEEECccCc
Confidence 99999865432111 1 123468999999999998
No 255
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.61 E-value=2.3e-14 Score=93.12 Aligned_cols=117 Identities=22% Similarity=0.292 Sum_probs=68.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC-CCCC--CCChhceeEEEEEECCcEEEEEEEeCCCccchh----H----h---HH
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF-VEKY--DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT----A----M---RD 69 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~----~---~~ 69 (128)
++|+++|.+|+||||++|.|++... .... .+.+..........++.. +.++||||-.+.. . . ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 6899999999999999999998543 3221 122334444555667776 8999999932211 1 1 11
Q ss_pred hhccCCcEEEEEEeCCChhHH--HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LYMKNGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
...++.+++++|+.... -+- .....++..+.. ..--..++||+|+.|......
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG--~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFG--EEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHC--GGGGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecCc-chHHHHHHHHHHHHHcc--HHHHhHhhHHhhhcccccccc
Confidence 23567899999999983 222 222223333322 122357999999998876543
No 256
>KOG0082|consensus
Probab=99.60 E-value=1.6e-14 Score=98.67 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=67.8
Q ss_pred EEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhhCCCCCc
Q psy784 41 RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVP 110 (128)
Q Consensus 41 ~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p 110 (128)
...+.+.+.. +.+.|++||..-+..|.+++.++++++||+++++-+ .+.+....+..+.+.....+++
T Consensus 187 e~~F~~k~~~--f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ts 264 (354)
T KOG0082|consen 187 EVEFTIKGLK--FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTS 264 (354)
T ss_pred EEEEEeCCCc--eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCc
Confidence 3445555644 999999999999999999999999999999999742 3566667777788877788999
Q ss_pred EEEEEecCCCCCCc
Q psy784 111 MVLVGNKCDLEEER 124 (128)
Q Consensus 111 ~ivv~nK~D~~~~~ 124 (128)
+|+++||.|+.++.
T Consensus 265 iiLFLNK~DLFeEK 278 (354)
T KOG0082|consen 265 IILFLNKKDLFEEK 278 (354)
T ss_pred EEEEeecHHHHHHH
Confidence 99999999997653
No 257
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=2.4e-14 Score=105.11 Aligned_cols=112 Identities=20% Similarity=0.142 Sum_probs=72.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC---CCCCC-CCChhceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI---FVEKY-DPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~---~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
-|+++|+.++|||||+++|.+.. +.++. ...+.+.....+.. ++. .+.+||+||++.|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 47899999999999999998632 22221 12222221122222 233 3899999999999877777889999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 123 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (128)
+|+|+++...-+.... +. +.. ..++| +++|+||+|+.++
T Consensus 80 LVVda~eg~~~qT~eh-l~-il~---~lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 80 LVVACDDGVMAQTREH-LA-ILQ---LTGNPMLTVALTKADRVDE 119 (614)
T ss_pred EEEECCCCCcHHHHHH-HH-HHH---HcCCCeEEEEEECCccCCH
Confidence 9999987422111111 11 112 23455 5899999999764
No 258
>KOG1191|consensus
Probab=99.60 E-value=1.7e-14 Score=101.17 Aligned_cols=119 Identities=24% Similarity=0.291 Sum_probs=85.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc---------hhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ---------FTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~ 71 (128)
.++|+|+|+||+|||||+|+|.+. .+......|+++.....++++|.. +.+.||.|-.+ -.......
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence 579999999999999999999984 344455678889999999999988 88999999554 11122335
Q ss_pred ccCCcEEEEEEeCCC--hhHHHHHHHHHHHHHh-----hhCCCCCcEEEEEecCCCCCC
Q psy784 72 MKNGQGFILVYSITA--QSTFNDLSDLREQILR-----VKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~-----~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+..+|++++|+|... -++-..+...+..... .+.....|++++.||+|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 788999999999943 3333332232322222 123355899999999999764
No 259
>COG2262 HflX GTPases [General function prediction only]
Probab=99.60 E-value=5e-14 Score=97.16 Aligned_cols=116 Identities=21% Similarity=0.322 Sum_probs=83.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC-CCCCCCCCChhceeEEEEEECC-cEEEEEEEeCCCcc---------chhHhHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDG-QQCMLEILDTAGTE---------QFTAMRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~---------~~~~~~~~~~ 72 (128)
..|.++|-+|+|||||+|++.+. .+..+..+.+-++....+...+ .. +.+-||.|-- .|.... ...
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksTL-EE~ 269 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKSTL-EEV 269 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHHH-HHh
Confidence 57999999999999999999973 3434434444444455555553 44 8899999911 222222 235
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+|+++.|+|.+++...+.+.....-+.. ......|+++|+||+|+.++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADEIPIILVLNKIDLLED 319 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCCCCEEEEEecccccCc
Confidence 679999999999999777777766666666 45566999999999998654
No 260
>KOG0072|consensus
Probab=99.60 E-value=2.6e-15 Score=89.90 Aligned_cols=117 Identities=20% Similarity=0.314 Sum_probs=91.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++.+++++|-.|+||+++..++.-++.... .|+.... ...+++ ...++++||..|+.+.+-.|+-+|.+.+++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfn-ve~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFN-VETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcC-cccccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 357999999999999999888876543332 2333211 223333 445599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|.++++........+..+....+-.+..+++++||.|...
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG 133 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh
Confidence 99999988877777776666656667789999999999864
No 261
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=3.7e-14 Score=100.94 Aligned_cols=116 Identities=21% Similarity=0.159 Sum_probs=75.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCC----------------------CCCChh------ceeEEEEEECCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEK----------------------YDPTIE------DSYRKQVEVDGQQC 51 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~----------------------~~~~~~------~~~~~~~~~~~~~~ 51 (128)
++++++++|+.++|||||+.+|+. +..... .+.... ........+.....
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 468999999999999999999975 211100 000010 11111223344455
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhH---H---HHHHHHHHHHHhhhCCCCCc-EEEEEecCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST---F---NDLSDLREQILRVKDTDDVP-MVLVGNKCDLE 121 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 121 (128)
.+.++|+||+.+|.......+..+|++++|+|...... | ......+..+ ...++| +|+++||+|+.
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~----~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA----FTLGVKQMIVCINKMDDK 158 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH----HHcCCCeEEEEEEccccc
Confidence 69999999999999888888999999999999987531 1 1111122222 234666 67999999953
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.58 E-value=3.6e-14 Score=100.96 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=76.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCC----------------------CCCChh------ceeEEEEEECCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEK----------------------YDPTIE------DSYRKQVEVDGQQC 51 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~----------------------~~~~~~------~~~~~~~~~~~~~~ 51 (128)
++++++++|+.++|||||+.+|+. +..... .+.... ........+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 468999999999999999999874 211100 000010 11111223344555
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHH-------HHHHHHHHHHhhhCCCCC-cEEEEEecCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFN-------DLSDLREQILRVKDTDDV-PMVLVGNKCDLE 121 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~ 121 (128)
.+.++|+||+++|.......+..+|++++|+|+.+. .|+ .....+..+ ...++ ++++++||+|+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~----~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA----FTLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH----HHcCCCcEEEEEEcccCC
Confidence 699999999999999999999999999999999873 221 222222212 23456 578899999986
No 263
>KOG0090|consensus
Probab=99.58 E-value=2e-14 Score=91.29 Aligned_cols=115 Identities=17% Similarity=0.306 Sum_probs=85.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhcc---CCcEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMK---NGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i~ 80 (128)
-.++++|+.+||||+|+-+|..+...... ++.+.....+...+.. .+++|.|||...+.....++. .+.+++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv--tSiepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV--TSIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee--eeeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 36899999999999999999987544332 3334445555555555 899999999999999888877 7899999
Q ss_pred EEeCCC-hhHHHHHHHHHHHHHhhh--CCCCCcEEEEEecCCCCC
Q psy784 81 VYSITA-QSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 122 (128)
|+|... .........++-.+.... ....+|+++.+||.|+.-
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 999874 334455555554444433 356789999999999954
No 264
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.58 E-value=2.3e-14 Score=108.61 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=78.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC--CCCCCCCC-------h--------hceeEEEEEE--------------CCcEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPT-------I--------EDSYRKQVEV--------------DGQQCM 52 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~-------~--------~~~~~~~~~~--------------~~~~~~ 52 (128)
-+|+++|+.++|||||+++|+... ........ . .......+.+ .+....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 389999999999999999998522 11110000 0 0111111222 123566
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+.++||||+.+|.......++.+|++++|+|+...-.-+....|.. + ...++|+++++||+|+.
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-H----HHCCCCEEEEEECCccc
Confidence 8999999999999999999999999999999997654444333322 2 23589999999999997
No 265
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.57 E-value=4.1e-14 Score=95.60 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=85.2
Q ss_pred EEEECCCCCChHHHHHHHhc-CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH-------hHHhhccCCcE
Q psy784 6 IVVLGSGGVGKSALTVQFVQ-GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNGQG 77 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~~ 77 (128)
+-++|.||+|||||++++.. +.-..+|..|+--+.-..+...+.. .|.+-|.||.-+-.. .....+.++.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~-sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE-SFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC-cEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 56899999999999999998 4445678888766666666653222 499999999443222 22335778999
Q ss_pred EEEEEeCCChh---HHHHHHHHHHHHHhh-hCCCCCcEEEEEecCCCCC
Q psy784 78 FILVYSITAQS---TFNDLSDLREQILRV-KDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 78 ~i~v~d~~~~~---s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~ 122 (128)
+++|+|++..+ ..++......++..+ ....+.|.++|+||+|+..
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 99999999654 356666666777665 3456899999999999644
No 266
>PTZ00416 elongation factor 2; Provisional
Probab=99.54 E-value=5.6e-14 Score=106.37 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=76.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCCCCCCC-------hh--------ceeEEEEEEC--------CcEEEEEEEeCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG--IFVEKYDPT-------IE--------DSYRKQVEVD--------GQQCMLEILDTA 59 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~-------~~--------~~~~~~~~~~--------~~~~~~~~~D~~ 59 (128)
+|+++|+.++|||||+++|+.. ........+ .. ......+.+. +....+.++|||
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 8999999999999999999862 111100000 00 0001122222 224568999999
Q ss_pred CccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|+.+|.......++.+|++++|+|....-.-+... .+..+. ..++|+++++||+|+.
T Consensus 101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQAL----QERIRPVLFINKVDRA 157 (836)
T ss_pred CHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHH----HcCCCEEEEEEChhhh
Confidence 99999999999999999999999999864433332 233332 3468999999999997
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=1.8e-13 Score=101.82 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=73.8
Q ss_pred ECCCCCChHHHHHHHhcCCC--CC--CCC-C-C-------------hhceeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 9 LGSGGVGKSALTVQFVQGIF--VE--KYD-P-T-------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 9 ~G~~~~GKstl~~~l~~~~~--~~--~~~-~-~-------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
+|+.++|||||+++|+.... .. ... . + +.......+.+.+ ..+.+||+||+..+.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 59999999999999965211 10 000 0 0 0011122333444 4599999999999888888
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+..+|++++|+|.+..........| ..+. ..++|+++++||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH----HcCCCEEEEEECCCCCCC
Confidence 889999999999999987655544332 2222 347899999999999753
No 268
>KOG4423|consensus
Probab=99.50 E-value=8e-17 Score=100.09 Aligned_cols=120 Identities=33% Similarity=0.545 Sum_probs=97.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECC-cEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDG-QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
++++++|.-|+||++++.+.....+...|+.+.. +...+....++ ..+++++||..|+++|..+..-+++.+++..+|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 5889999999999999999988777677766664 33333334444 345689999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCC---CCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~ 123 (128)
||+++.-+|+....|.+.+..-..- .-.|+++..||||....
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 9999999999999999998774332 33788999999998653
No 269
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.50 E-value=1.9e-13 Score=102.40 Aligned_cols=112 Identities=22% Similarity=0.278 Sum_probs=75.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC--CCCCCCCC-------C--------hhceeEEEE--EECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG--IFVEKYDP-------T--------IEDSYRKQV--EVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~-------~--------~~~~~~~~~--~~~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+++|+.++|||||+.+|+.. ........ . +.......+ .+.+....+.++||||+.+|.
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~ 101 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence 7999999999999999999852 21111000 0 001111112 224456678999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
......++.+|++++|+|......-+.... +..+.. .+.|.++++||+|+.
T Consensus 102 ~~~~~~l~~~D~avlVvda~~g~~~~t~~~-~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQTETV-LRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCCccHHHH-HHHHHH----cCCCeEEEEECchhh
Confidence 888889999999999999987643333222 222222 356889999999986
No 270
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.4e-13 Score=93.90 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=81.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCC----------------------CCCChh------ceeEEEEEECCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEK----------------------YDPTIE------DSYRKQVEVDGQQC 51 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~----------------------~~~~~~------~~~~~~~~~~~~~~ 51 (128)
++++++++|+..+|||||+-+|+. +.+.+. .+.+.+ ........+....+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 578999999999999999999974 222110 000000 11112233444556
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HH--HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.++++|+||+.+|....-.-..++|++++|+|+.+.+ .| .........+... -.-..+|+++||+|..+-
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--lGi~~lIVavNKMD~v~w 160 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--LGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--cCCceEEEEEEccccccc
Confidence 7999999999999999999999999999999999874 22 2222233333332 224578999999999863
No 271
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.47 E-value=3.6e-12 Score=79.74 Aligned_cols=62 Identities=26% Similarity=0.405 Sum_probs=42.0
Q ss_pred EEEEeCCCccc----hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecC
Q psy784 53 LEILDTAGTEQ----FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118 (128)
Q Consensus 53 ~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (128)
+.++|+||-.. .......+++.+|++++|.+.+...+-.....+.... ......+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML----DPDKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH----TTTCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh----cCCCCeEEEEEcCC
Confidence 88999999542 2355666779999999999999855544443333333 23445599999985
No 272
>KOG3886|consensus
Probab=99.44 E-value=3.1e-13 Score=87.11 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=83.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh-----HhHHhhccCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----AMRDLYMKNG 75 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~ 75 (128)
.-|++++|.+|+|||++=..++.+ .+.....+.+.+....+..+-|.- .+.+||++|++.+- ......++++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl-~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNL-VLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhh-eeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 458999999999999995444422 111111122234445555555544 38999999988433 2445689999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhh-hCCCCCcEEEEEecCCCCCCc
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++.+++||++..+--..+.++...+... ...+...+.+..+|+|+...+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 9999999999987766666666654443 356788899999999997643
No 273
>KOG0462|consensus
Probab=99.44 E-value=1.4e-12 Score=92.86 Aligned_cols=115 Identities=18% Similarity=0.248 Sum_probs=87.3
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCC--------------CCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKY--------------DPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAM 67 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (128)
++.|+-+-.=|||||..+|+. +...... +.-+. ......+..++..+.+.++|||||.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 567788888999999999986 3221111 01010 111122233467788999999999999999
Q ss_pred HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 68 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
....+..++++++|+|.+....-+....++..+.. +..+|.|+||+|++..+
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSAD 193 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCC
Confidence 99999999999999999998888888887777655 89999999999998653
No 274
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=3.5e-13 Score=93.19 Aligned_cols=111 Identities=19% Similarity=0.134 Sum_probs=55.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhc-CCCCCCCCCC--hhceeEEEEEECCcEEEEEEEeCCCccchhHhHHh-----hccC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ-GIFVEKYDPT--IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-----YMKN 74 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~~ 74 (128)
.++|+++|.+|+|||||+|+|.+ +...+...++ .+.............-.+.+||.||.......... -+..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~ 114 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYR 114 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccc
Confidence 58999999999999999999987 2221222222 11111111111222224899999995433322222 3556
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
-|.+|++.+- .|.....++... ....++|+++|-||+|.
T Consensus 115 yD~fiii~s~----rf~~ndv~La~~---i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 115 YDFFIIISSE----RFTENDVQLAKE---IQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp -SEEEEEESS----S--HHHHHHHHH---HHHTT-EEEEEE--HHH
T ss_pred cCEEEEEeCC----CCchhhHHHHHH---HHHcCCcEEEEEecccc
Confidence 7877765442 232222222222 22358899999999996
No 275
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=1.6e-12 Score=77.18 Aligned_cols=92 Identities=25% Similarity=0.345 Sum_probs=67.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCC-CChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+|++++|..|+|||+++.++....+...+. ++.. +.......++.++.++.|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999997766543322 1111 3334455677889999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+.....+++.+ |...+.. ......|.++++||.|+.+++
T Consensus 55 ~~~~~~s~~~~--~~~~i~~-~~k~dl~~~~~~nk~dl~~~~ 93 (124)
T smart00010 55 RVDDRDSADNK--NVPEVLV-GNKSDLPILVGGNRDVLEEER 93 (124)
T ss_pred EccCHHHHHHH--hHHHHHh-cCCCCCcEEEEeechhhHhhC
Confidence 99999998766 5544443 344568999999999985543
No 276
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.43 E-value=8.3e-13 Score=88.95 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=66.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCC---C-------CCh-hceeEEEEEECCcEEEEEEEeCCCcc---------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY---D-------PTI-EDSYRKQVEVDGQQCMLEILDTAGTE--------- 62 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~---~-------~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~--------- 62 (128)
+++|+++|.+|+|||||+|.|++....... . .+. .......+.-++..+.+.++||||-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999985432221 0 000 12222334446778889999999911
Q ss_pred ---------chhHhHHh---------hccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 63 ---------QFTAMRDL---------YMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 63 ---------~~~~~~~~---------~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|...... .=.++|++++.+..+... +-..+ ..+..+ ...+++|.|+.|.|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L-----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL-----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH-----TTTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh-----cccccEEeEEecccccCH
Confidence 11111111 112368889988876421 11111 122222 456899999999999765
Q ss_pred cee
Q psy784 124 RVV 126 (128)
Q Consensus 124 ~~v 126 (128)
.++
T Consensus 158 ~el 160 (281)
T PF00735_consen 158 EEL 160 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 277
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.41 E-value=6.1e-12 Score=86.07 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=56.1
Q ss_pred EEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEE---------------------CC-cEEEEEEEeCCCc-
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEV---------------------DG-QQCMLEILDTAGT- 61 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~D~~g~- 61 (128)
++++|.+|||||||+|++.+.... ..+..++.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999985432 33444443333322221 22 3367999999997
Q ss_pred ---cchhHhHHh---hccCCcEEEEEEeCCC
Q psy784 62 ---EQFTAMRDL---YMKNGQGFILVYSITA 86 (128)
Q Consensus 62 ---~~~~~~~~~---~~~~~~~~i~v~d~~~ 86 (128)
+.+..+... .++.+|++++|+|+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 445544444 4899999999999973
No 278
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.5e-12 Score=90.04 Aligned_cols=117 Identities=23% Similarity=0.194 Sum_probs=83.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.+=++++|+-.-|||||+..+...+..+....-.+ .--...+..+ +....+.|+|||||+-|..++..-..-+|++++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 34588999999999999999998665443332222 2222233332 122359999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
|+++++.-.-+... ..++....++|++++.||+|+++.+
T Consensus 85 VVa~dDGv~pQTiE-----AI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 85 VVAADDGVMPQTIE-----AINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred EEEccCCcchhHHH-----HHHHHHHCCCCEEEEEecccCCCCC
Confidence 99999853333221 1122446799999999999998643
No 279
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.39 E-value=3.7e-12 Score=89.58 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=59.8
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCCh----------hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
..+.++|++|+...+..|.+++.++++++||+++++- ..+.+....+..+.......++|+++++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 3489999999999999999999999999999998753 236666677777777666679999999999998
Q ss_pred CC
Q psy784 121 EE 122 (128)
Q Consensus 121 ~~ 122 (128)
..
T Consensus 316 f~ 317 (389)
T PF00503_consen 316 FE 317 (389)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 280
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.39 E-value=2.7e-11 Score=79.82 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=42.2
Q ss_pred EEEEEEeCCCccc-------------hhHhHHhhccC-CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy784 51 CMLEILDTAGTEQ-------------FTAMRDLYMKN-GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 116 (128)
Q Consensus 51 ~~~~~~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (128)
..+.++|+||-.. ...+...++++ .+++++|+|....-.-..... +.......+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~----ia~~ld~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK----LAKEVDPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH----HHHHHHHcCCcEEEEEE
Confidence 3488999999642 11223445664 458889998875322222111 12222345789999999
Q ss_pred cCCCCCC
Q psy784 117 KCDLEEE 123 (128)
Q Consensus 117 K~D~~~~ 123 (128)
|+|..++
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9999764
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=1.6e-11 Score=80.44 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=65.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
...++++|.+|+|||||++.+.+....... ........ .....+ .++.++|+||.. .......+.+|++++++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-~~~~g~i~-i~~~~~--~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-SDIKGPIT-VVTGKK--RRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcc-ccccccEE-EEecCC--ceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 456899999999999999999864211111 01111111 111233 348899999854 22223467899999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcE-EEEEecCCCCC
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEE 122 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~ 122 (128)
|.+........ ..+..+. ..+.|. ++|+||+|+.+
T Consensus 112 Da~~~~~~~~~-~i~~~l~----~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 112 DASFGFEMETF-EFLNILQ----VHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred ecCcCCCHHHH-HHHHHHH----HcCCCeEEEEEeccccCC
Confidence 99864433221 2222222 345775 55999999964
No 282
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.7e-12 Score=92.70 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=83.1
Q ss_pred eEEEEECCCCCChHHHHHHHhc--CCCCC--CCC-------CChh--------ceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ--GIFVE--KYD-------PTIE--------DSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~--~~~~~--~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
-++.++|+-.+||||+..+|+. +.... +.. .... ......+.+.+ .+.++++|||||-+|
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVDF 89 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVDF 89 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcccc
Confidence 3789999999999999999985 22111 100 0111 11112233343 466999999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.......++-+|++++|+|+...-..+.-..|.+.. ..++|.++++||+|+...
T Consensus 90 t~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~-----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 90 TIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD-----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh-----hcCCCeEEEEECcccccc
Confidence 999999999999999999999876666555555543 358999999999999754
No 283
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.38 E-value=1.4e-11 Score=86.55 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=56.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEE---------------------C-CcEEEEEEEeCCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEV---------------------D-GQQCMLEILDTAG 60 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~g 60 (128)
++++++|.+|||||||+|+|.+.... ..+..++.+.......+ + .....++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999985443 34444544333333221 1 1236689999999
Q ss_pred c----cchhHhHHhh---ccCCcEEEEEEeCC
Q psy784 61 T----EQFTAMRDLY---MKNGQGFILVYSIT 85 (128)
Q Consensus 61 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 85 (128)
. .....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2333333333 89999999999997
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.38 E-value=9.1e-12 Score=86.98 Aligned_cols=83 Identities=20% Similarity=0.202 Sum_probs=59.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccc---
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQ--- 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~--- 63 (128)
.+++.++|.+|||||||+|+|.+.. ....+..++.+.....+.+.+.. .+++++|+||...
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 4689999999999999999998743 34456666666666666654332 2489999999432
Q ss_pred ----hhHhHHhhccCCcEEEEEEeCC
Q psy784 64 ----FTAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 64 ----~~~~~~~~~~~~~~~i~v~d~~ 85 (128)
........++++|++++|+|..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2222333578899999999984
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.36 E-value=2.5e-11 Score=88.92 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=69.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC-CCCCC-CCChhceeEEEEEECCcEEEEEEEeCCCccchh-------HhH---Hh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI-FVEKY-DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-------AMR---DL 70 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~---~~ 70 (128)
.++|+++|.+|+||||++|+|++.. +.... .+.+..........++.. +.++||||-.... ... ..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHHH
Confidence 3689999999999999999999854 33221 122222222233345544 8999999955321 111 11
Q ss_pred hcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhh-CCCCCcEEEEEecCCCCCC
Q psy784 71 YMK--NGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~ 123 (128)
++. ..|++|+|..+.......+-...+..+.... ..--..+|||+|+.|..+.
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 223 4799999988764332211112233332211 1223588999999999863
No 286
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.36 E-value=7.2e-12 Score=89.39 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC---CCCC-CCCCh-hceeEE--------------EEEECC--------------
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI---FVEK-YDPTI-EDSYRK--------------QVEVDG-------------- 48 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~---~~~~-~~~~~-~~~~~~--------------~~~~~~-------------- 48 (128)
++++|.++|+-..|||||+.+|.+-. +..+ .+..+ .-.+.. ......
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 46899999999999999999998621 1111 11111 000000 000000
Q ss_pred --cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 49 --QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 49 --~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
....+.++|+||++.|..........+|++++|+|+... ..-+.... +..+.. ..-.|+++++||+|+.+
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~---lgi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEI---MKLKHIIILQNKIDLVK 185 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHH---cCCCcEEEEEecccccC
Confidence 013589999999999988887888899999999999974 22222211 121211 22347899999999975
No 287
>KOG1490|consensus
Probab=99.35 E-value=1.9e-12 Score=91.42 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=81.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-----chhHh-HHh---hccC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-----QFTAM-RDL---YMKN 74 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~-~~~---~~~~ 74 (128)
+++++|-+|+|||||+|.+.... -.+.|..|+..-+..++.+.... ++++||||.- +.+.. ... ..+-
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlr--wQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLR--WQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheee--eeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 68999999999999999988743 33456667766666777666666 8999999922 11111 111 1122
Q ss_pred CcEEEEEEeCCC--hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 75 GQGFILVYSITA--QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 75 ~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
-.+++++.|++. ..|......++..+.. ...+.|.|+|+||+|+.....+
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCcccc
Confidence 346788889885 4566666666666655 3568999999999999775543
No 288
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=7.1e-12 Score=88.15 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=86.9
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCC--------------CCCCChh--ceeEEEEEE-CCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVE--------------KYDPTIE--DSYRKQVEV-DGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~--------------~~~~~~~--~~~~~~~~~-~~~~~~~~~~D~~g~~~~~ 65 (128)
++.++-+-.=|||||..|++. +.... ..++-+. ......+.. +++.+.+.++|||||.+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 466777888999999999986 22211 1111111 122222332 4588999999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
-.....+..|.++++++|.+..-.-+.+...+..+.. +.-++.|+||+||+..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~A 143 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAA 143 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCC
Confidence 9999999999999999999998877888887777755 8899999999999874
No 289
>KOG1707|consensus
Probab=99.34 E-value=2.5e-11 Score=86.94 Aligned_cols=117 Identities=23% Similarity=0.310 Sum_probs=88.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
+++.++|+.++|||.+++.++++.+...+..+.. .+....+...++...+.+-|.+-. ......... ..+|++.++|
T Consensus 426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~Y 503 (625)
T KOG1707|consen 426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVY 503 (625)
T ss_pred eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEec
Confidence 6899999999999999999999877664433332 333344555577777888888754 333333333 7799999999
Q ss_pred eCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 83 SITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|.+++.+|.-+......... ...+|+++|++|+|+.+..|
T Consensus 504 DsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q 543 (625)
T KOG1707|consen 504 DSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQ 543 (625)
T ss_pred ccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhh
Confidence 99999999888776665444 37899999999999987654
No 290
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.33 E-value=1.5e-11 Score=85.06 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=59.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccch---
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQF--- 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~--- 64 (128)
+++.++|.+|||||||+|+|.+.. ....+..++.+.....+.+.+.. .++.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999844 33455666666666666555432 24899999994321
Q ss_pred ----hHhHHhhccCCcEEEEEEeCC
Q psy784 65 ----TAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 65 ----~~~~~~~~~~~~~~i~v~d~~ 85 (128)
.......++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112233478899999999984
No 291
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=83.43 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=67.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC-CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH-------hHHhhccCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNG 75 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 75 (128)
-+++++|.|++|||||+++|.+. .-..+|..|+.+.....+.+++-. +++.|+||.-.-.. ..-...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 47899999999999999999984 344668888888888888888887 89999998432222 233468899
Q ss_pred cEEEEEEeCCChhH
Q psy784 76 QGFILVYSITAQST 89 (128)
Q Consensus 76 ~~~i~v~d~~~~~s 89 (128)
|.+++|+|+.....
T Consensus 142 DlIiiVld~~~~~~ 155 (365)
T COG1163 142 DLIIIVLDVFEDPH 155 (365)
T ss_pred CEEEEEEecCCChh
Confidence 99999999997654
No 292
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.30 E-value=1.5e-11 Score=82.48 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=56.4
Q ss_pred EEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccch-----
Q psy784 6 IVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQF----- 64 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~----- 64 (128)
++++|.+|||||||+|+|.+.. ....+..++.+.....+.+.+.. ..++++|+||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 4789999999999999999844 33455666656666666665532 24899999994321
Q ss_pred --hHhHHhhccCCcEEEEEEeCC
Q psy784 65 --TAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 65 --~~~~~~~~~~~~~~i~v~d~~ 85 (128)
.......++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112233467899999999874
No 293
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.30 E-value=5.1e-12 Score=74.21 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=68.1
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhH----HhhccCCcEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR----DLYMKNGQGFIL 80 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i~ 80 (128)
|++++|..|+|||||.+++.+....... ...+.+++.- .+|+||.--....+ ......++++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK--------TQAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK--------TQAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc--------cceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999999986533221 1222333331 38999944333333 335678999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|-.++++++--.-. .......|+|=|.||.|+.+..+|
T Consensus 71 v~~and~~s~f~p~--------f~~~~~k~vIgvVTK~DLaed~dI 108 (148)
T COG4917 71 VHAANDPESRFPPG--------FLDIGVKKVIGVVTKADLAEDADI 108 (148)
T ss_pred eecccCccccCCcc--------cccccccceEEEEecccccchHhH
Confidence 99999986632211 012345679999999999965544
No 294
>KOG0085|consensus
Probab=99.29 E-value=8.8e-13 Score=85.39 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy784 47 DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGN 116 (128)
Q Consensus 47 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (128)
+-+.+.|.++|++|+...+..|-+++.++..++|++..+. ....++...++..+..+....+.++|+.+|
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLN 274 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 274 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEec
Confidence 3355668899999999999999999999888877666553 334666677777788888889999999999
Q ss_pred cCCCCCCcee
Q psy784 117 KCDLEEERVV 126 (128)
Q Consensus 117 K~D~~~~~~v 126 (128)
|.|+.+++..
T Consensus 275 KkDlLEekI~ 284 (359)
T KOG0085|consen 275 KKDLLEEKIL 284 (359)
T ss_pred hhhhhhhhhh
Confidence 9999887654
No 295
>PRK09866 hypothetical protein; Provisional
Probab=99.28 E-value=2.4e-10 Score=83.65 Aligned_cols=68 Identities=26% Similarity=0.412 Sum_probs=44.4
Q ss_pred EEEEEeCCCccch-----hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQF-----TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++.++||||-... .......+..+|+++||+|.....+.... .....+.. ...+.|+++|+||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk--~~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILA--VGQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHh--cCCCCCEEEEEEcccCCC
Confidence 4789999996542 22334478999999999999874333221 11222222 112369999999999964
No 296
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4e-11 Score=83.68 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=84.1
Q ss_pred eEEEEECCCCCChHHHHHHHhc--CCCCCCC--------CCC-h----------hceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ--GIFVEKY--------DPT-I----------EDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~--~~~~~~~--------~~~-~----------~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
=..+|+-+|.+|||||-.+|+- +.+...- ..+ + .......+.++.....+.+.|||||+
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe 92 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE 92 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence 3678999999999999999863 3322110 000 0 12223334555556669999999999
Q ss_pred chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|......-+-.+|.+++|+|+...---+.+. +...++..++|++-++||.|+.....+
T Consensus 93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-----LfeVcrlR~iPI~TFiNKlDR~~rdP~ 151 (528)
T COG4108 93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-----LFEVCRLRDIPIFTFINKLDREGRDPL 151 (528)
T ss_pred ccchhHHHHHHhhheeeEEEecccCccHHHHH-----HHHHHhhcCCceEEEeeccccccCChH
Confidence 99999999999999999999998753333332 333456789999999999999765543
No 297
>KOG1145|consensus
Probab=99.24 E-value=1.8e-10 Score=82.42 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=82.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh---ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.=+.++|+-.=|||||+..|...........-.. .-+...++ .++. ++|.|||||.-|..++..--+-.|++++
T Consensus 154 PVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 154 PVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccEEEE
Confidence 3478999999999999999987654433322221 23334444 5665 8999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|+...+.-.-+.+.. ..+....++|+++.+||||.++.
T Consensus 231 VVAadDGVmpQT~Ea-----IkhAk~A~VpiVvAinKiDkp~a 268 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEA-----IKHAKSANVPIVVAINKIDKPGA 268 (683)
T ss_pred EEEccCCccHhHHHH-----HHHHHhcCCCEEEEEeccCCCCC
Confidence 999998543332221 11234578999999999999764
No 298
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.24 E-value=1.4e-11 Score=81.22 Aligned_cols=70 Identities=19% Similarity=0.080 Sum_probs=37.3
Q ss_pred EEEEEeCCCccchhHhHHhhc--------cCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYM--------KNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+.++|+|||.++...+.... ...-++++++|.....+-... ..++..+.. ....+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 489999999988777765533 345578888888754332111 111222111 1225799999999999976
No 299
>KOG1532|consensus
Probab=99.22 E-value=6.8e-12 Score=82.98 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=47.4
Q ss_pred EEEEEEeCCCcc-chhHhHHhh-------ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTE-QFTAMRDLY-------MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~-~~~~~~~~~-------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
....++||||+- .|.|..... ....-++++++|.....+-.........+.++.....+|+|+++||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 458899999965 445444332 122357778888876443333333333344445578899999999999977
Q ss_pred Cc
Q psy784 123 ER 124 (128)
Q Consensus 123 ~~ 124 (128)
..
T Consensus 196 ~~ 197 (366)
T KOG1532|consen 196 SE 197 (366)
T ss_pred cH
Confidence 53
No 300
>KOG0458|consensus
Probab=99.22 E-value=6.6e-11 Score=84.81 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=80.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCC--------------------C--CCCCCCh------hceeEEEEEECCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIF--------------------V--EKYDPTI------EDSYRKQVEVDGQQC 51 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~--------------------~--~~~~~~~------~~~~~~~~~~~~~~~ 51 (128)
.++.++++|+..+|||||+-+++. +.. . ...+.|. .........++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 368899999999999999999853 110 0 0000111 122233445556666
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.++++|.||+.+|....-.-...+|++++|+|++..+ .|+.-....+...-.....-..+|+++||+|+.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 7999999999999999988899999999999999742 3332222222221111233568899999999975
No 301
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.20 E-value=1.6e-10 Score=81.30 Aligned_cols=116 Identities=19% Similarity=0.247 Sum_probs=81.0
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCCCCChh-------------ceeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIE-------------DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
+|+|+-+-.=|||||+..|+. +.|.....-..+ .-..+...++...+.+.++|||||-+|-...+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 789999999999999999986 344332111110 11222233344556699999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
..+.=+|++++++|..+...-+.- .....+. ..+.+-|+|+||+|+++.|.
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl----~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQTR-FVLKKAL----ALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhhhhcceEEEEEEcccCCCCchh-hhHHHHH----HcCCCcEEEEeCCCCCCCCH
Confidence 999999999999999986433221 1222222 34777788889999988764
No 302
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.1e-10 Score=78.33 Aligned_cols=116 Identities=21% Similarity=0.135 Sum_probs=76.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC--C--------CC--CCC----------------------hhceeEEEEEECC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV--E--------KY--DPT----------------------IEDSYRKQVEVDG 48 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~--~--------~~--~~~----------------------~~~~~~~~~~~~~ 48 (128)
.+|++-+|.-.-|||||+-||+...-. + .. ..+ +.+.-...+ .-
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--sT 83 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--ST 83 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--cc
Confidence 479999999999999999999752110 0 00 001 001111112 22
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.+-+|.+.|||||++|....-.--.-||++++++|.-. -..+...-...+.... .-..+++..||+||.+.+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccC
Confidence 33359999999999999988887888999999999954 3333333334344422 235789999999998754
No 303
>KOG0468|consensus
Probab=99.18 E-value=2.8e-10 Score=83.04 Aligned_cols=113 Identities=22% Similarity=0.335 Sum_probs=80.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCC---------CCCCChh----ceeE--------EEEEECCcEEEEEEEeCCCcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVE---------KYDPTIE----DSYR--------KQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~---------~~~~~~~----~~~~--------~~~~~~~~~~~~~~~D~~g~~ 62 (128)
.++.++|+-..|||+|+.-|....-+. .|..+.. .... .--..++..+.++++|||||.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 478999999999999999886532111 1111110 0000 001225667779999999999
Q ss_pred chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+|-......++.+|++++++|+...-+++.-..... ....+.|+++|+||+|+.
T Consensus 209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikh-----aiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKH-----AIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHH-----HHhccCcEEEEEehhHHH
Confidence 999999999999999999999998777654332222 334689999999999984
No 304
>PRK13768 GTPase; Provisional
Probab=99.18 E-value=1.5e-11 Score=81.89 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=43.9
Q ss_pred EEEEEeCCCccchhH---hHHhh---ccC--CcEEEEEEeCCChhHHHHHHH-HHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTA---MRDLY---MKN--GQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~---~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+.++|+||+.+... .+..+ +.+ .+++++++|.....+...... ++..+... ...+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhcC
Confidence 489999999766432 22222 222 789999999975443322211 11111111 124799999999999976
Q ss_pred Cc
Q psy784 123 ER 124 (128)
Q Consensus 123 ~~ 124 (128)
..
T Consensus 177 ~~ 178 (253)
T PRK13768 177 EE 178 (253)
T ss_pred ch
Confidence 54
No 305
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.18 E-value=8.5e-10 Score=77.29 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=68.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC----C-------------CCCCCCC---ChhceeE---EEEEE---CCcEEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG----I-------------FVEKYDP---TIEDSYR---KQVEV---DGQQCMLEIL 56 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~----~-------------~~~~~~~---~~~~~~~---~~~~~---~~~~~~~~~~ 56 (128)
++.|.++|+.++|||||+|++.+. . .++...+ ++.++.. ..+.. ++-..++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 478999999999999999999875 2 2223233 2333222 22222 4556779999
Q ss_pred eCCCcc--------chhH-----------h----------HHhhcc-CCcEEEEEE-eCCC----hhHHHHH-HHHHHHH
Q psy784 57 DTAGTE--------QFTA-----------M----------RDLYMK-NGQGFILVY-SITA----QSTFNDL-SDLREQI 100 (128)
Q Consensus 57 D~~g~~--------~~~~-----------~----------~~~~~~-~~~~~i~v~-d~~~----~~s~~~~-~~~~~~~ 100 (128)
|++|-. +... . ....++ .+++.++|. |.+- ++.+... ..+...+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999922 1111 0 222344 788888887 6641 1222222 2233333
Q ss_pred HhhhCCCCCcEEEEEecCCC
Q psy784 101 LRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 101 ~~~~~~~~~p~ivv~nK~D~ 120 (128)
...++|+++++||.|-
T Consensus 177 ----k~~~kPfiivlN~~dp 192 (492)
T TIGR02836 177 ----KELNKPFIILLNSTHP 192 (492)
T ss_pred ----HhcCCCEEEEEECcCC
Confidence 3478999999999993
No 306
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.13 E-value=7.7e-10 Score=85.23 Aligned_cols=101 Identities=23% Similarity=0.232 Sum_probs=66.5
Q ss_pred CChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECC----------------cEEEEEEEeCCCccchhHhHHhhccCCc
Q psy784 14 VGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDG----------------QQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (128)
Q Consensus 14 ~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (128)
++||||+.+|.+...+.......+ .--...+..+. ....+.+|||||++.|.......+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 569999999998554433222221 10011111110 0112899999999999998888888999
Q ss_pred EEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 77 GFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++|+|+++ +.+++.+. .+. ..++|+++++||+|+.+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk----~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILR----QYKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHH----HcCCCEEEEEECCCCcc
Confidence 9999999986 34444332 122 23689999999999964
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.12 E-value=5.9e-10 Score=76.39 Aligned_cols=118 Identities=20% Similarity=0.333 Sum_probs=69.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCC-----CC-----Ch-hceeEEEEEECCcEEEEEEEeCCC-----------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY-----DP-----TI-EDSYRKQVEVDGQQCMLEILDTAG----------- 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~-----~~-----~~-~~~~~~~~~~~~~~~~~~~~D~~g----------- 60 (128)
.+++.++|++|.|||||+|+|++....... .+ +. .......+.-++..+.+.++||||
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 478999999999999999999975322211 11 11 122223334467788899999999
Q ss_pred -------ccchhHhHHh---hc-------cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 61 -------TEQFTAMRDL---YM-------KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 61 -------~~~~~~~~~~---~~-------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..++...... .. .++|++++.+-.+.. .+..+ ...+.. .....+.+|.|+.|.|....
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~---DIe~Mk-~ls~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPL---DIEAMK-RLSKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHH---HHHHHH-HHhcccCeeeeeeccccCCH
Confidence 1122222111 11 236777777765542 22111 111111 23457899999999999765
Q ss_pred ce
Q psy784 124 RV 125 (128)
Q Consensus 124 ~~ 125 (128)
++
T Consensus 178 ~E 179 (373)
T COG5019 178 DE 179 (373)
T ss_pred HH
Confidence 54
No 308
>KOG2655|consensus
Probab=99.11 E-value=5.9e-10 Score=76.71 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=70.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCC-----CCCCh-----hceeEEEEEECCcEEEEEEEeCCC------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK-----YDPTI-----EDSYRKQVEVDGQQCMLEILDTAG------------ 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~D~~g------------ 60 (128)
.|++.++|++|.|||||+|.|+...+... ..... .......+.-++-.+.++++||||
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 38999999999999999999987533222 00011 122222333367788899999999
Q ss_pred ------ccchhHhHHh-------hcc--CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 61 ------TEQFTAMRDL-------YMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 61 ------~~~~~~~~~~-------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
..+|...... .+. ++|++++.+..+.. .+..+ ...+.. .....+++|.|+.|.|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~---Di~~Mk-~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPL---DIEFMK-KLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHh---hHHHHH-HHhccccccceeeccccCCHHH
Confidence 1122222111 122 57788887776542 11111 111222 2345789999999999976554
Q ss_pred e
Q psy784 126 V 126 (128)
Q Consensus 126 v 126 (128)
+
T Consensus 176 l 176 (366)
T KOG2655|consen 176 L 176 (366)
T ss_pred H
Confidence 3
No 309
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.10 E-value=3.7e-10 Score=68.94 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=36.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
+++++|.+|+|||||+|++.+............+.+...+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 78999999999999999999865432211112233334444443 3789999994
No 310
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.06 E-value=7.9e-10 Score=68.64 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=34.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
+.+++++|.+|+|||||+|++.+..... ...+++. ....+.. +.. +.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~--~~~~~~~-~~~--~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETK--VWQYITL-MKR--IYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeE--eEEEEEc-CCC--EEEEECcC
Confidence 5688999999999999999999854322 2222221 1222222 333 78999998
No 311
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.04 E-value=8.7e-09 Score=73.85 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=61.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEEC--CcEEEEEEEeCCCccchhHhHHhhccCC----
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVD--GQQCMLEILDTAGTEQFTAMRDLYMKNG---- 75 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~---- 75 (128)
+-.|+++|..++|||||+.+|.+..- +..+. -++....+.-. +...++.+|-..|...+.......+...
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 35799999999999999999876432 11222 23333222221 2334689999988777777776655542
Q ss_pred cEEEEEEeCCChhHH-HHHHHHHHH
Q psy784 76 QGFILVYSITAQSTF-NDLSDLREQ 99 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~~~ 99 (128)
-++++|+|.+.+..+ +++..|...
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~v 126 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSV 126 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHH
Confidence 377889999999765 455555443
No 312
>KOG1144|consensus
Probab=99.02 E-value=1.5e-09 Score=80.16 Aligned_cols=111 Identities=23% Similarity=0.197 Sum_probs=76.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEE-------------EECC----cEEEEEEEeCCCccchh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-------------EVDG----QQCMLEILDTAGTEQFT 65 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~D~~g~~~~~ 65 (128)
..=+|++|+-.+|||-|+..+.+.+.+....+......-.++ .-++ .---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 345899999999999999999874332221122111110000 0011 11237899999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
..+......||.+|+|+|+-.. .+.+++. .++..++|+|+.+||+|+.
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi~--------lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESIN--------LLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHHH--------HHHhcCCCeEEeehhhhhh
Confidence 9999999999999999999864 3333322 1345789999999999985
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.3e-09 Score=75.11 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=60.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECC----------------cEEEEEEEeCCCcc---
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDG----------------QQCMLEILDTAGTE--- 62 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g~~--- 62 (128)
.+++.|+|.||||||||+|++.... -..+|+.++.++......+.+ ....++++|..|..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999844 346677777655555443311 23458999988833
Q ss_pred ----chhHhHHhhccCCcEEEEEEeCCC
Q psy784 63 ----QFTAMRDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 63 ----~~~~~~~~~~~~~~~~i~v~d~~~ 86 (128)
=.-+.....++.+|+++.|+++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 233344456888999999999984
No 314
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.02 E-value=1.4e-09 Score=68.51 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=35.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCC--CCCChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
++++++|.+|+|||||+|++.+...... ..+++.. ...+... .. +.++|+||
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~-~~--~~l~DtPG 171 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLD-KK--VKLLDSPG 171 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeC-CC--EEEEECcC
Confidence 6899999999999999999998543222 2222222 2233332 33 88999998
No 315
>KOG0461|consensus
Probab=99.01 E-value=4.9e-09 Score=71.77 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=75.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC----CCCCCCCCChhceeEEE-----EEE-------CCcEEEEEEEeCCCccchhH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG----IFVEKYDPTIEDSYRKQ-----VEV-------DGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~----~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~~~D~~g~~~~~~ 66 (128)
.+++.++|+-.+|||||.+++..- +|.....++.+ ..... +.. .++..++.++|+||+.....
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eR-giTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTER-GITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCccccc-ceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 479999999999999999999862 33332222221 11111 111 46778899999999887766
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..-.-..=.|..++|+|+.....-+...-++. .... -...++|+||+|..++.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLii---g~~~--c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLII---GELL--CKKLVVVINKIDVLPEN 138 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhh---hhhh--ccceEEEEeccccccch
Confidence 55554555678899999997655544432221 1112 23678888999987663
No 316
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.00 E-value=4.6e-09 Score=72.96 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=61.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccc---
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQ--- 63 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~--- 63 (128)
+++.++|.+++|||||+|.+.+... ...|..++.+.....+.+.+.+ ..+++.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998543 3456666656666666665532 3588999999543
Q ss_pred ----hhHhHHhhccCCcEEEEEEeCC
Q psy784 64 ----FTAMRDLYMKNGQGFILVYSIT 85 (128)
Q Consensus 64 ----~~~~~~~~~~~~~~~i~v~d~~ 85 (128)
........++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2334455689999999999985
No 317
>KOG3905|consensus
Probab=98.96 E-value=2.2e-08 Score=68.12 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=62.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEE--ECCcEEEEEEEeCCCccchhHhHHhhccCC----c
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVE--VDGQQCMLEILDTAGTEQFTAMRDLYMKNG----Q 76 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----~ 76 (128)
.-+|+++|+.++|||||+.+|.+..- ... ...-++....+. ..+...++.+|-..|.-.........+... .
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~-~Kk-gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSET-VKK-GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccc-cCC-CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 35799999999999999999987431 111 122222222221 123335688899999777777777666543 4
Q ss_pred EEEEEEeCCChhHH-HHHHHHHHHH
Q psy784 77 GFILVYSITAQSTF-NDLSDLREQI 100 (128)
Q Consensus 77 ~~i~v~d~~~~~s~-~~~~~~~~~~ 100 (128)
.+|++.|+++++.+ +++..|..-+
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl 154 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVL 154 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHH
Confidence 67789999999664 5555555433
No 318
>KOG1486|consensus
Probab=98.94 E-value=1.4e-08 Score=66.92 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=67.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc-CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHH-------hhccCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ-GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD-------LYMKNG 75 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~~ 75 (128)
-|++++|.|.+|||||+..+.. ..-...|..|+-......+.+++.. +++.|.||.-+-...-. ...+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeecc
Confidence 5899999999999999999987 3444567777777888888888888 88999999554433322 245668
Q ss_pred cEEEEEEeCCChhHHHHH
Q psy784 76 QGFILVYSITAQSTFNDL 93 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~ 93 (128)
|.+++|.|....+.-..+
T Consensus 141 DlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREI 158 (364)
T ss_pred cEEEEEecCCcchhHHHH
Confidence 999999999987655433
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=7e-09 Score=69.59 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc---CCC---CCC-----------CCCChhceeEEEEEECCcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ---GIF---VEK-----------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~---~~~---~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (128)
++.+|..+|+-.-|||||--+|.. ... ... ...-+.+.-..++....+. +-.+|+||+.+|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDY 88 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHH
Confidence 578999999999999999988753 111 001 1111112333334444555 778999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-cEEEEEecCCCCCCce
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEERV 125 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~ 125 (128)
....-.-..++|+.|+|+...+...-+.....+ . .+.-++ .+++++||+|+.++++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----l-arqvGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----L-ARQVGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----h-hhhcCCcEEEEEEecccccCcHH
Confidence 998888888999999999999864433322211 1 122345 5677889999987543
No 320
>KOG0099|consensus
Probab=98.93 E-value=4.4e-09 Score=69.52 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh----------HHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
.++|.++|++|+.+.+..|-.+++++.+++||...++-. .+++.-.++..+-+-.....+.+|+.+||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 345999999999999999999999999999999988632 2333333333333312234689999999999
Q ss_pred CCCCc
Q psy784 120 LEEER 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+.+++
T Consensus 281 llaeK 285 (379)
T KOG0099|consen 281 LLAEK 285 (379)
T ss_pred HHHHH
Confidence 97653
No 321
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.92 E-value=5.4e-09 Score=65.80 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=36.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
++++++|.+|+||||++|++.+..................+... . .+.++||||-
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~--~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-P--GIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-C--CEEEEECCCC
Confidence 68999999999999999999986543221111112222333333 3 3789999993
No 322
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.90 E-value=7.8e-09 Score=69.79 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=36.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCC--CCCChhceeEEEEEECCcEEEEEEEeCCCc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
.++++++|.+|+|||||+|+|.+...... ...++.. ...+... .. +.++||||-
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~-~~--~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLS-DG--LELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeC-CC--EEEEECCCc
Confidence 47899999999999999999997543222 2222222 2233332 23 789999995
No 323
>KOG1547|consensus
Probab=98.89 E-value=1.8e-08 Score=65.95 Aligned_cols=115 Identities=24% Similarity=0.373 Sum_probs=65.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCC-CC-----CC---hh-ceeEEEEEECCcEEEEEEEeCCC------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK-YD-----PT---IE-DSYRKQVEVDGQQCMLEILDTAG------------ 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~-----~~---~~-~~~~~~~~~~~~~~~~~~~D~~g------------ 60 (128)
+++|.++|.+|.|||||+|+++....... .. +. .+ ......+.-++-+.+++++||||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 48999999999999999999986322111 11 11 11 11122234467778899999999
Q ss_pred ------ccchhHhH--------HhhccC--CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 61 ------TEQFTAMR--------DLYMKN--GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 61 ------~~~~~~~~--------~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+++.... ...+.. ++++++.+-.+. .++..+. .++.. ....-+.++-|+-|.|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplD---ieflk-rLt~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLD---IEFLK-RLTEVVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCccc---HHHHH-HHhhhheeeeeEeeccccc
Confidence 11222222 122222 566676665554 3333322 11222 1233567888999999754
No 324
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.88 E-value=7.6e-08 Score=59.36 Aligned_cols=113 Identities=17% Similarity=0.264 Sum_probs=65.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCC-Cc--------------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTA-GT-------------------- 61 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g~-------------------- 61 (128)
.+|+++.|++|+||||++.++.+.--.. ..........++...+..+-|.++|+. |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~--g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK--GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc--CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 4799999999999999999998621111 123344556667777777888888877 31
Q ss_pred -cchhHh----HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 62 -EQFTAM----RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 62 -~~~~~~----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+.+... .+..++.+|++++ |--.+--+ ....+...+.. .-....|++.++++.+.+
T Consensus 83 v~~le~i~~~al~rA~~~aDvIII--DEIGpMEl-ks~~f~~~ve~-vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVIII--DEIGPMEL-KSKKFREAVEE-VLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEEEE--ecccchhh-ccHHHHHHHHH-HhcCCCcEEEEEecccCC
Confidence 111111 1223445676554 44333222 12222333333 334678899999887553
No 325
>KOG2486|consensus
Probab=98.88 E-value=8.3e-09 Score=68.59 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=64.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCC-CCChhceeEEEEEECCcEEEEEEEeCCC----------ccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY-DPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 71 (128)
..+++++|.+|+|||+|+|-+......... .+....+......--+.. +.++|.|| ..+...+...+
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCcccccCCccCcchHhHhHHHH
Confidence 478999999999999999999874322221 112222223222223444 88899999 12333333333
Q ss_pred -ccCCc--EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 72 -MKNGQ--GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 72 -~~~~~--~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++.+ .+++++|++.+-. ... .....+....++|+.+|+||||..-
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~--~~D---~~~i~~~ge~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQ--PTD---NPEIAWLGENNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHhhhhhheeeeeeeccCCCC--CCC---hHHHHHHhhcCCCeEEeeehhhhhh
Confidence 33322 2334555554321 111 1122334567999999999999853
No 326
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.87 E-value=1.4e-08 Score=68.97 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=36.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
.++++++|.+||||||++|+|.+............+.....+.. +.. +.++||||-.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~--~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKG--LELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCc--EEEEECCCcC
Confidence 37899999999999999999998543222111111111223333 233 7899999943
No 327
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.86 E-value=1.4e-08 Score=62.94 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=35.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC-C-CCCCCChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF-V-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
..+++++|.+|+||||++|++.+... . .....++..... +... . .+.++||||
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~--~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-N--KIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-C--CEEEEECCC
Confidence 46799999999999999999998442 2 222233333322 2322 3 388999998
No 328
>KOG3887|consensus
Probab=98.85 E-value=7.1e-09 Score=67.87 Aligned_cols=116 Identities=15% Similarity=0.205 Sum_probs=75.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCC---ChhceeEEEEEECCcEEEEEEEeCCCccchhH---hHHhhccCCcE
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDP---TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA---MRDLYMKNGQG 77 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~ 77 (128)
.+++++|...+|||++...++. +.++...- ++......+ +.+.-+.|++||.||+..+-. ...+.++++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFh-kMsPneTlflESTski~~d~--is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTSKITRDH--ISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeee-ccCCCceeEeeccCcccHhh--hhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 5799999999999999555544 32222110 000000111 123557799999999875543 34667999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHh-hhCCCCCcEEEEEecCCCCCC
Q psy784 78 FILVYSITAQSTFNDLSDLREQILR-VKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+++|+|..+. ..+.+..+...+.+ +.-.+++.+-+.++|.|-..+
T Consensus 105 LifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 105 LIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 9999999863 34444444433333 345688999999999998653
No 329
>KOG1954|consensus
Probab=98.83 E-value=4e-08 Score=67.91 Aligned_cols=118 Identities=16% Similarity=0.269 Sum_probs=75.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCC---CCChhceeEEEEE-----ECCcEE------------------------
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVE-----VDGQQC------------------------ 51 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~------------------------ 51 (128)
.=|+++|.=..||||+++-|+...++..- .+|+..+....-. +.+...
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 35889999999999999999987765321 1222111111100 001000
Q ss_pred ---------EEEEEeCCC-----------ccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcE
Q psy784 52 ---------MLEILDTAG-----------TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 111 (128)
Q Consensus 52 ---------~~~~~D~~g-----------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 111 (128)
.++++|+|| ...|....+.+..++|.++++||....+--.+....+..+ ....-.+
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Edki 214 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHEDKI 214 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCccee
Confidence 288999999 2356677788899999999999987654333333333333 3345578
Q ss_pred EEEEecCCCCCCce
Q psy784 112 VLVGNKCDLEEERV 125 (128)
Q Consensus 112 ivv~nK~D~~~~~~ 125 (128)
-+|+||.|..+..|
T Consensus 215 RVVLNKADqVdtqq 228 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQ 228 (532)
T ss_pred EEEeccccccCHHH
Confidence 88999999977543
No 330
>KOG1491|consensus
Probab=98.82 E-value=1.1e-08 Score=69.65 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=59.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECC---------------cEEEEEEEeCCCcc---
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDG---------------QQCMLEILDTAGTE--- 62 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~--- 62 (128)
.++++.|+|.+++|||||+|.|.+.. .+.++..++.+.....+.+.+ ....++++|+.|..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 36799999999999999999999843 345566666555555544322 33458999988733
Q ss_pred -c---hhHhHHhhccCCcEEEEEEeCCC
Q psy784 63 -Q---FTAMRDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 63 -~---~~~~~~~~~~~~~~~i~v~d~~~ 86 (128)
. .-......++.+|+++.|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 2 22333345778999999888764
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=1.4e-08 Score=64.91 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.+++++|.+|+|||||+|+|.+.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHh
Confidence 57999999999999999999974
No 332
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.81 E-value=1.5e-08 Score=69.73 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=38.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
..++.++|-+||||||+||+|.+............+.....+..+.. +.++||||--
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 37899999999999999999998654322222222333344444333 7899999933
No 333
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.80 E-value=3e-08 Score=61.42 Aligned_cols=55 Identities=25% Similarity=0.232 Sum_probs=35.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
..+++++|.+|+||||++|++.+.... ...++........+...+. .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~--~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS--KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC--CEEEEECcC
Confidence 368899999999999999999974422 2222222222222221233 389999998
No 334
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.78 E-value=9e-09 Score=63.90 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|++|||||||+|.|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999975
No 335
>KOG0467|consensus
Probab=98.76 E-value=3.7e-08 Score=73.00 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=77.1
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCCCCCC------hhc-------eeEEEEEECCcEEEEEEEeCCCccchhHhHH
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPT------IED-------SYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
+++++-+-.=|||||+..|.. +.+.+...+. .++ .-...++.....+.+.++|+|||.+|.....
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 678888999999999999874 2221111111 111 1112233334556689999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
...+-+|++++++|+...---+......+.. ..+...++|+||+|+
T Consensus 91 sas~l~d~alvlvdvvegv~~qt~~vlrq~~-----~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVCSQTYAVLRQAW-----IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeeccccchhHHHHHHHHH-----HccCceEEEEehhhh
Confidence 9999999999999999765444443333322 347788999999995
No 336
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.74 E-value=1.2e-07 Score=74.85 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCCC--CC----hhceeEEEEEECCcEEEEEEEeCCCcc--------chhHhHHhh
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFVEKYD--PT----IEDSYRKQVEVDGQQCMLEILDTAGTE--------QFTAMRDLY 71 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~ 71 (128)
.+++|++|+||||+++.- +..++-... .. ..........+.++ ..++|++|.. .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 589999999999998876 333322110 00 01111112223334 4689999932 222334443
Q ss_pred c---------cCCcEEEEEEeCCChhH---------HHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 72 M---------KNGQGFILVYSITAQST---------FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 72 ~---------~~~~~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+ +-.+++|+++|+.+.-. -..+...+.++.. ......|+.+++||+|+.+
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~-~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE-QLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH-HhCCCCCEEEEEecchhhc
Confidence 2 23799999999986421 1344444455554 3345799999999999863
No 337
>KOG0448|consensus
Probab=98.74 E-value=2.7e-07 Score=67.90 Aligned_cols=66 Identities=17% Similarity=0.356 Sum_probs=42.4
Q ss_pred EEEEeCCCcc---chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 53 LEILDTAGTE---QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 53 ~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.++|.||.+ ..+.....+-..+|++++|.+..+..+..+.. ++..... ....++++-||.|....
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~----~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE----EKPNIFILNNKWDASAS 276 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc----cCCcEEEEechhhhhcc
Confidence 7789999944 55566666778899999998887654443322 2222222 24455666677798765
No 338
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.74 E-value=1.5e-08 Score=67.34 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=50.2
Q ss_pred cchhHhHHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 62 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+.+..+.+.+++++|++++|||+.++. +++.+..|+..+.. .++|+++|+||+||.++++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~ 84 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDED 84 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHH
Confidence 666777778999999999999999877 89999888875543 6799999999999976544
No 339
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.69 E-value=1.1e-06 Score=57.77 Aligned_cols=83 Identities=22% Similarity=0.182 Sum_probs=50.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC--CCCCC--CCCChhceeEEEEEEC-CcEEEEEEEeCCCccchhH------hHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG--IFVEK--YDPTIEDSYRKQVEVD-GQQCMLEILDTAGTEQFTA------MRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~--~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~------~~~~~~ 72 (128)
.-|.++|++++|||+|+|+|++. .+... ..+++........... +....+.++||+|...... .....+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 45789999999999999999986 55322 2233333222222221 2335699999999553322 222233
Q ss_pred cC--CcEEEEEEeCCC
Q psy784 73 KN--GQGFILVYSITA 86 (128)
Q Consensus 73 ~~--~~~~i~v~d~~~ 86 (128)
.. ++++++..+.+.
T Consensus 88 ~~llss~~i~n~~~~~ 103 (224)
T cd01851 88 ATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHhCEEEEeccCcc
Confidence 33 677777666654
No 340
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.67 E-value=1.1e-07 Score=65.67 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=38.9
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+.++||+|..+-... ....+|.++++.+....+..+.... .... ..-++|+||+|+...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNK 209 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccch
Confidence 45899999996633332 4667999999876555554444321 1111 223899999998753
No 341
>KOG0705|consensus
Probab=98.66 E-value=2.1e-08 Score=72.13 Aligned_cols=114 Identities=25% Similarity=0.528 Sum_probs=90.7
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++++|+.|+|..++|||+|+.+++.+.+.+...+.. ..+.+++-..++...+.+.|.+|... ..+-..+|+.||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcC-ccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 467899999999999999999999988877654433 44566777788887788888887332 223456899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
||.+.+..+|+.+..+...+..+.....+|+++++++.=.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i 141 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI 141 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchh
Confidence 9999999999999988888877666778899999887544
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=98.66 E-value=4e-08 Score=68.24 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|.+|||||||+|+|++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 3689999999999999999974
No 343
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.64 E-value=3.9e-07 Score=62.27 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=37.1
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+.++||+|...... .....+|.++++...... +++......+ ..+|.++++||+|+.+.
T Consensus 127 ~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 127 YDVIIVETVGVGQSEV---DIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGA 187 (300)
T ss_pred CCEEEEeCCCCchhhh---HHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccch
Confidence 4589999998543222 245667777777443322 3332222222 35678999999999754
No 344
>KOG0464|consensus
Probab=98.64 E-value=4.4e-09 Score=73.67 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=84.3
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCC----CCCCCCh-----------hceeEEEEEECCcEEEEEEEeCCCccchhHh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFV----EKYDPTI-----------EDSYRKQVEVDGQQCMLEILDTAGTEQFTAM 67 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (128)
+|.++..-.+||||.-.|++. +... .+...|. ...+...+.++....++.++||||+.+|+..
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 567788889999999999874 1111 0111111 1233444555666666999999999999999
Q ss_pred HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 68 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
...+++--|+++.|||.+..-.-+.+..|.+ ....++|-++.+||+|...
T Consensus 119 verclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhhh
Confidence 9999999999999999998777677766655 3456899999999999864
No 345
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.8e-07 Score=64.15 Aligned_cols=112 Identities=17% Similarity=0.062 Sum_probs=74.4
Q ss_pred EEEECCCCCChHHHHHHHhcCC--CCCC--CCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 6 IVVLGSGGVGKSALTVQFVQGI--FVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
|...|+---|||||++.+.+.. ..++ ...++.+ -....+......+.++|+||++++....-......|.+++|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiD--lg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITID--LGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEe--eeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 5667888899999999998732 1122 1222222 12222233333699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++.++.-..+...... +.. .......++|+||+|+.++
T Consensus 81 V~~deGl~~qtgEhL~--iLd--llgi~~giivltk~D~~d~ 118 (447)
T COG3276 81 VAADEGLMAQTGEHLL--ILD--LLGIKNGIIVLTKADRVDE 118 (447)
T ss_pred EeCccCcchhhHHHHH--HHH--hcCCCceEEEEeccccccH
Confidence 9997654333322211 111 1234456999999999875
No 346
>PRK12289 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.4e-07 Score=65.66 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4799999999999999999964
No 347
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=2.3e-07 Score=61.67 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|.+|||||||+|+|.+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 36789999999999999999974
No 348
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.54 E-value=1.8e-06 Score=53.71 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCccchhHhHHh--------hccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDL--------YMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
.....++|+||-......... ..-..+.+++++|..+-... .+...+...+.. .=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 345789999997654444433 23346889999997643322 122222222222 23568899996
No 349
>KOG3859|consensus
Probab=98.53 E-value=8.4e-07 Score=59.45 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=40.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEE-----EEEECCcEEEEEEEeCCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-----QVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~D~~g 60 (128)
++|+.+|.+|.|||||+.+|++..+.....+.....+.. ...-.+-.++++++||.|
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 789999999999999999999977755443333222221 122245567899999998
No 350
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.51 E-value=1.4e-07 Score=64.05 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|++|+|||||+|.|.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 46899999999999999999974
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.48 E-value=4.2e-07 Score=63.62 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=34.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC-------CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF-------VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
-++.++|.+|||||||+|+|++... ......++.. ...+... .. +.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~-~~--~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLD-DG--HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeC-CC--CEEEECCCCCC
Confidence 3799999999999999999997321 1111122222 2223332 22 57999999543
No 352
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=4.3e-07 Score=61.42 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=35.6
Q ss_pred EEEEECCCCCChHHHHHHHhcCC------CCCCC-CCChhceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI------FVEKY-DPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
..+++|.+|||||||+|+|.... ..... ....+..+...+.+.+.. .++||||-.++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 56899999999999999998521 11111 122223444555554332 469999944433
No 353
>KOG0410|consensus
Probab=98.47 E-value=4.8e-07 Score=61.66 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCC--CCChhc-eeEEEEEECCcEEEEEEEeCCCcc---------chhHhHHhh
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIED-SYRKQVEVDGQQCMLEILDTAGTE---------QFTAMRDLY 71 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~ 71 (128)
.-|.++|-+|||||||+++|......++. ..|... ....+.. .+.. +.+.||-|-- .|.... ..
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp-sg~~--vlltDTvGFisdLP~~LvaAF~ATL-ee 254 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP-SGNF--VLLTDTVGFISDLPIQLVAAFQATL-EE 254 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC-CCcE--EEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence 35889999999999999999964443321 112111 1112222 3444 8889999811 222222 23
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCC----CcEEEEEecCCCCC
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD----VPMVLVGNKCDLEE 122 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~----~p~ivv~nK~D~~~ 122 (128)
...+|.++.|.|++.+.--+.....+.-+.. ...+. ..++=|-||+|..+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhcccccccc
Confidence 5668999999999998654444443333333 22222 33556778888754
No 354
>KOG0465|consensus
Probab=98.47 E-value=8.4e-08 Score=69.74 Aligned_cols=114 Identities=19% Similarity=0.102 Sum_probs=77.2
Q ss_pred EEEECCCCCChHHHHHHHhcCC-C----CCC-CCCCh-----------hceeEEEEEECCcEEEEEEEeCCCccchhHhH
Q psy784 6 IVVLGSGGVGKSALTVQFVQGI-F----VEK-YDPTI-----------EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR 68 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~-~----~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 68 (128)
|-+.-+-.+||||+-++++... . ... ...+. ..-......+......+.++|||||.+|....
T Consensus 42 Igi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EV 121 (721)
T KOG0465|consen 42 IGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEV 121 (721)
T ss_pred cceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEe
Confidence 4455566799999999987411 1 000 00000 01111222333445669999999999999999
Q ss_pred HhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 69 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...++--|++++++|....-.-+....|.+.-. -++|.+..+||+|+....
T Consensus 122 eRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r-----y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 122 ERALRVLDGAVLVLDAVAGVESQTETVWRQMKR-----YNVPRICFINKMDRMGAS 172 (721)
T ss_pred hhhhhhccCeEEEEEcccceehhhHHHHHHHHh-----cCCCeEEEEehhhhcCCC
Confidence 999999999999999987765555555544332 389999999999997654
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=4.2e-07 Score=63.72 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=34.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC-------CCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF-------VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
-++.++|.+|||||||+|+|+.... ......|+.+. ..+...+. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence 4789999999999999999985321 11222233322 22333333 4789999953
No 356
>PRK00098 GTPase RsgA; Reviewed
Probab=98.44 E-value=3.1e-07 Score=62.69 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.-.++++|++|+|||||+|+|.+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999874
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.42 E-value=2.9e-06 Score=60.39 Aligned_cols=66 Identities=12% Similarity=-0.017 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCccchhHhHHh------hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDL------YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+.+.++||+|........-. .....+-+++|+|......-.+.. ..+.. .--+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~----~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKD----SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHh----ccCCcEEEEECccCCC
Confidence 356899999996644332211 123467889999987543222221 11111 1236788899999864
No 358
>KOG0460|consensus
Probab=98.41 E-value=1.5e-06 Score=59.66 Aligned_cols=119 Identities=17% Similarity=0.100 Sum_probs=76.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc---C-C------CC-----CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ---G-I------FV-----EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~---~-~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
+++++.-+|+-.=|||||--++.. . . +. ++.......-...++.+....-.+--.|+||+.+|..
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 467889999999999999888753 1 1 10 0000001111222333322222366799999999998
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..-.--.+.|+.|+|+..++...-+.-...+. .. ...-..+++.+||.|+.++.
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLL-Ar---QVGV~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLL-AR---QVGVKHIVVFINKVDLVDDP 186 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHH-HH---HcCCceEEEEEecccccCCH
Confidence 88888888999999999998654433222211 22 23446788899999998543
No 359
>KOG1424|consensus
Probab=98.33 E-value=1.1e-06 Score=63.08 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
+.|.++|-+||||||.||+|.+.+-...........+..++..... +.+.|+||.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGL 369 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGL 369 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence 7899999999999999999999765443322233566666655444 788999993
No 360
>KOG1143|consensus
Probab=98.31 E-value=7.4e-07 Score=61.98 Aligned_cols=117 Identities=22% Similarity=0.247 Sum_probs=71.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-------------CCCCCh-----------hceeEEEEEE----------CC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-------------KYDPTI-----------EDSYRKQVEV----------DG 48 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-------------~~~~~~-----------~~~~~~~~~~----------~~ 48 (128)
++|++++|...+|||||+-.|..+.... ....+. .+.....+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5799999999999999988775432110 000000 0110111111 11
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccC--CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKN--GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...-++++|..|+..|....-+-+.+ .|.+.++++....-.+..-..+- + ...-++|++++.+|+|+.+..
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg--l---~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG--L---IAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHH--H---HHHhCCCeEEEEEeeccccch
Confidence 22348999999999887665443332 58888999988765553322211 1 124589999999999998763
No 361
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.3e-06 Score=57.70 Aligned_cols=118 Identities=19% Similarity=0.118 Sum_probs=71.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC---CC----------------------CCCCCCChhceeEEEEEEC----CcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG---IF----------------------VEKYDPTIEDSYRKQVEVD----GQQCM 52 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~---~~----------------------~~~~~~~~~~~~~~~~~~~----~~~~~ 52 (128)
+.++|-++|+-.=|||||..+|.+- .. +..+.+.. -......... ...-.
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~-y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPEC-YTTEPKCPNCGAETELVRR 87 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcc-cccCCCCCCCCCCccEEEE
Confidence 3679999999999999999999651 10 11110000 0000001111 11234
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.|+|.|||+..-+....-..-+|++++|+..+.+..--+....+-.+. .-.-..++++=||+|+..+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale---Iigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE---IIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh---hhccceEEEEecccceecH
Confidence 7899999999777666665666899999999997532211111111111 2345689999999999764
No 362
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.6e-05 Score=58.32 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=64.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEE-ECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVE-VDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+=++++|++|+|||||+..+..+--... .. .....++ +.+..-.+++..+| .+...+.. ..+=+|.++++
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLl 140 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLL 140 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEE
Confidence 35678999999999999999876311111 10 1111111 24555668999998 33333332 23447999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+|.+-.--.+.+.. +..+.. .....++-|+|+.|+..
T Consensus 141 IdgnfGfEMETmEF-Lnil~~---HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 141 IDGNFGFEMETMEF-LNILIS---HGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred eccccCceehHHHH-HHHHhh---cCCCceEEEEeeccccc
Confidence 99986544444332 222222 23345788999999964
No 363
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=2.1e-05 Score=55.27 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+||||++.+|..
T Consensus 139 ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999875
No 364
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.24 E-value=1.3e-05 Score=56.02 Aligned_cols=117 Identities=21% Similarity=0.182 Sum_probs=71.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC---------------hhceeEEEEEECCcE-----------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT---------------IEDSYRKQVEVDGQQ----------------- 50 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~----------------- 50 (128)
++.+...|+-+.|||||.-.|..+....-...+ +.+.....+.+++..
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 578899999999999998887653321111001 111111222222211
Q ss_pred ----EEEEEEeCCCccchhHhH--HhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 51 ----CMLEILDTAGTEQFTAMR--DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 51 ----~~~~~~D~~g~~~~~~~~--~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
--+.++|+.|++.+-... ..+-.+.|..++++..++..+--.-. ..-+ ......|++++.||+|+.+++
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi---~~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGI---ALAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhh---hhhhcCCEEEEEEecccCcHH
Confidence 127899999998654333 33456789999999999865432211 1111 224578999999999997754
No 365
>KOG0447|consensus
Probab=98.22 E-value=2.7e-05 Score=56.87 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=45.7
Q ss_pred EEEEeCCC-------------ccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 53 LEILDTAG-------------TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 53 ~~~~D~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
+.++|.|| -+....+..++..+.+++|+|+--- |.+.-......+.....-.+...|+|+||.|
T Consensus 414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVD 490 (980)
T ss_pred eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecc
Confidence 77899999 2345566677889999999986322 2222222333445544556788999999999
Q ss_pred CCCC
Q psy784 120 LEEE 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+.+.
T Consensus 491 lAEk 494 (980)
T KOG0447|consen 491 LAEK 494 (980)
T ss_pred hhhh
Confidence 9764
No 366
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.17 E-value=9e-06 Score=41.60 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.7
Q ss_pred cCCcEEEEEEeCCC--hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 73 KNGQGFILVYSITA--QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 73 ~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
+-.++++|++|.+. ..+.++....+.++.. ...+.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 44689999999996 4567777777777766 355899999999998
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.16 E-value=3.3e-05 Score=52.23 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=37.8
Q ss_pred EEEEEEeCCCccchhHhHHh-------hc-----cCCcEEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCcEEEEEec
Q psy784 51 CMLEILDTAGTEQFTAMRDL-------YM-----KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNK 117 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (128)
+.+.++||||........-. .. ...+..++|+|.... +.+..... +.. .. -+--+|+||
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~--~~--~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNE--AV--GLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHh--hC--CCCEEEEEc
Confidence 56899999997654333211 11 237888999999853 22332221 211 01 256888999
Q ss_pred CCCCC
Q psy784 118 CDLEE 122 (128)
Q Consensus 118 ~D~~~ 122 (128)
.|...
T Consensus 227 lDe~~ 231 (272)
T TIGR00064 227 LDGTA 231 (272)
T ss_pred cCCCC
Confidence 99854
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.15 E-value=1.9e-05 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.1
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
--++++|++|+||||++..+..
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999998864
No 369
>KOG1534|consensus
Probab=98.14 E-value=5.2e-06 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|.++-.+++|+.|+||||+++.+..
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHH
Confidence 5677889999999999999999853
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.12 E-value=5.3e-06 Score=57.53 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=36.0
Q ss_pred EEEEEEeCCCccchhHhH----Hhh--ccCCcEEEEEEeCCChhH-HHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMR----DLY--MKNGQGFILVYSITAQST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+.+.++||+|........ ..+ ..+.+..++|.|...... .+.+.. +.. . --+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~---~-~~~~giIlTKlD~~~ 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNE---A-VGIDGVILTKVDADA 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHh---c-CCCCEEEEeeecCCC
Confidence 348999999966422221 111 224678889999876432 222221 111 1 123577889999854
No 371
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.08 E-value=4.9e-05 Score=51.75 Aligned_cols=101 Identities=11% Similarity=0.173 Sum_probs=64.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc---------------------
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE--------------------- 62 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------------------- 62 (128)
..++++|++|.|||++++++...-.. .... +...+.+..+.+|...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~-~~d~------------~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPP-QSDE------------DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCC-CCCC------------CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC
Confidence 46899999999999999999974321 1111 1112235555555411
Q ss_pred ---chhHhHHhhccCCcEEEEEEeCCCh---hHHHHHHHHHHHHHhhhCCCCCcEEEEEec
Q psy784 63 ---QFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNK 117 (128)
Q Consensus 63 ---~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (128)
.........++...+=++++|=-.. -+..+....+..+......-.+|++.+||+
T Consensus 129 ~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 129 RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 2222233467777777888876532 245556666666777667888999999975
No 372
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.08 E-value=3.3e-05 Score=48.58 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=37.4
Q ss_pred EEEEEEeCCCccchhHhH----Hhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMR----DLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+.++|++|...+.... ..+ ....+..++|++....... ......+.. ..+ ..-+|+||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~---~~~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNE---ALG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHh---hCC-CCEEEEECCcCCCC
Confidence 347889999975332111 111 2347889999998754322 122222322 112 36777799998653
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.07 E-value=3.5e-06 Score=54.24 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.0
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy784 5 KIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~ 24 (128)
-++++|++||||||.+-+|.
T Consensus 3 vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHH
Confidence 57899999999999998885
No 374
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.03 E-value=4.8e-06 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 375
>KOG4273|consensus
Probab=98.03 E-value=1.9e-05 Score=52.41 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=69.5
Q ss_pred eEEEEECCCCC--ChHHHHHHHhcCCCCCCCCC-ChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 4 YKIVVLGSGGV--GKSALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 4 ~~i~i~G~~~~--GKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.-.+++|.+|+ ||-++..+|....+...... ...+++-+++..+...-.+.+.=.+--+.+.........-..++++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 45789999998 99999999988666543222 2234444554433333223322222111111111122333578899
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+||.+....+..+..|+..-.- +.. --+++++||.|+.+
T Consensus 85 vfdlse~s~l~alqdwl~htdi-nsf--dillcignkvdrvp 123 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDI-NSF--DILLCIGNKVDRVP 123 (418)
T ss_pred EEeccchhhhHHHHhhcccccc-ccc--hhheeccccccccc
Confidence 9999999999999888764322 111 24578899999864
No 376
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=4.5e-05 Score=55.74 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+||||++..|..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988864
No 377
>PRK13695 putative NTPase; Provisional
Probab=98.02 E-value=4.3e-05 Score=48.18 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++++|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998754
No 378
>PRK08118 topology modulation protein; Reviewed
Probab=98.02 E-value=5.6e-06 Score=51.99 Aligned_cols=21 Identities=52% Similarity=0.860 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
||+|+|++||||||++..|..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999986
No 379
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.01 E-value=1.3e-05 Score=54.49 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 68 RDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
....+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD 124 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh
Confidence 445689999999999999887 77777776665543 47899999999999654
No 380
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.01 E-value=5.9e-06 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
||+++|++||||||++.+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 381
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.00 E-value=1e-05 Score=51.68 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.2
Q ss_pred cchhHhHHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 62 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+......++++++++++|+|+.+.. ++. ..+. ....+.|+++|+||+|+.++
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~--~~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLR--LFGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCccc------hhHH--HhcCCCcEEEEEEchhcCCC
Confidence 346788888999999999999998753 221 1111 12356899999999999653
No 382
>PRK07261 topology modulation protein; Provisional
Probab=97.99 E-value=6.7e-06 Score=51.83 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
||+|+|++|+|||||++.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 383
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.98 E-value=1.6e-05 Score=50.03 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=31.9
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDT 58 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 58 (128)
++++.|++|+||||+++++...--.. ......++...+..++..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~--~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK--GLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT--CGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc--CCccceEEeecccCCCceEEEEEEEC
Confidence 68999999999999999988621000 01112233444445666666777776
No 384
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.97 E-value=1.1e-05 Score=49.95 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=37.0
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+....+..+++|++++|+|..++...... . +..+....+.|+++|+||+|+.++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~----l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K----LERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H----HHHHHHhCCCcEEEEEEhHHhCCH
Confidence 45667788899999999999875433221 1 111112346899999999999643
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.97 E-value=9.7e-06 Score=49.41 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=35.7
Q ss_pred HhhccCCcEEEEEEeCCChhHHH--HHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 69 DLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...+.++|++++|+|+.++.+.. .+..++. . ...++|+++|+||+|+.+++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~--~~~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVK---E--VDPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHH---h--ccCCCcEEEEEechhcCCHH
Confidence 34578899999999998876543 2222222 2 12578999999999997543
No 386
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.97 E-value=0.00013 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=20.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
--+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998743
No 387
>PRK14530 adenylate kinase; Provisional
Probab=97.96 E-value=8.3e-06 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|.+.+|+++|++||||||+++.|..
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5677999999999999999999864
No 388
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.95 E-value=9.4e-05 Score=50.22 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=34.6
Q ss_pred EEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+.++.|.|--+.... ..+-+|.++++.-.--.+..+-+..-+-++ -=++|+||.|+..
T Consensus 146 vIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~ 203 (323)
T COG1703 146 VIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKG 203 (323)
T ss_pred EEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhh
Confidence 777888774433322 223367777776666566666554433333 3478889999654
No 389
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.94 E-value=8.4e-05 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++||+||||||-+-+|..
T Consensus 205 vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999998887754
No 390
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.93 E-value=0.00025 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6889999999999999988874
No 391
>KOG1487|consensus
Probab=97.93 E-value=2.8e-05 Score=51.89 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=61.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh-------HHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM-------RDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~~~~ 76 (128)
++-++|.+.+||||++..+.+.. ..+.+..+.-........+++-. +++.|.||.-+-... .-...+.|+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 78899999999999999998742 23445555544445555566666 899999994432221 122456689
Q ss_pred EEEEEEeCCChhHHHHHH
Q psy784 77 GFILVYSITAQSTFNDLS 94 (128)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~ 94 (128)
.+++|.|+..+-+-..+.
T Consensus 139 li~~vld~~kp~~hk~~i 156 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKII 156 (358)
T ss_pred EEEEEeeccCcccHHHHH
Confidence 999999999887665553
No 392
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=9.3e-06 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|||||||++-+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999887
No 393
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.92 E-value=0.00017 Score=40.45 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=55.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh-HHhhccCCcEEEEEEeC
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM-RDLYMKNGQGFILVYSI 84 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 84 (128)
+++.|.+|+||||+...+...--...+ .....+ .+.++|+++....... .......++.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 578899999999999988752100010 011111 5889999986544432 24456677888888777
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEe
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 116 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (128)
... +....................+..++.|
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 69 EAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred chh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 643 3333333322233323445556666554
No 394
>KOG2484|consensus
Probab=97.91 E-value=1.5e-05 Score=55.79 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=35.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCC-CCCChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
.+++.++|-+|+||||+||+|..+..... ..+..+ ..-..+. -+.. +.+.|+||
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT-~smqeV~-Ldk~--i~llDsPg 306 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT-RSMQEVK-LDKK--IRLLDSPG 306 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCCCCccch-hhhhhee-ccCC--ceeccCCc
Confidence 58999999999999999999998544322 222211 1122222 2333 78899999
No 395
>KOG0463|consensus
Probab=97.88 E-value=2.8e-05 Score=54.43 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=37.8
Q ss_pred EEEEEeCCCccchhHhHHhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 52 MLEILDTAGTEQFTAMRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
-++++|..|++.|-...-.- =+-.|-..+++..+..- --+.+...-+ ...-++|+++|.||+|+.+..
T Consensus 220 viTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgL---ALaL~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGL---ALALHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhh---hhhhcCcEEEEEEeeccCcHH
Confidence 37899999999876543221 12234455555555321 0111111111 123578999999999987654
No 396
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.88 E-value=1.8e-05 Score=41.39 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++.|+.|+||||++.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998864
No 397
>PRK12289 GTPase RsgA; Reviewed
Probab=97.88 E-value=3.2e-05 Score=54.04 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=37.9
Q ss_pred HhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 69 DLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
...+.++|.+++|+|+.++. ....+..|+..+. ..++|+++|+||+|+.++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSP 135 (352)
T ss_pred chhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCCh
Confidence 33588899999999998765 3445555555442 357999999999999754
No 398
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.87 E-value=1.3e-05 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 399
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.86 E-value=0.0002 Score=41.17 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=48.8
Q ss_pred EEEEC-CCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 6 IVVLG-SGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 6 i~i~G-~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
+++.| .+|+||||+...+...--.... + ..-+.. +..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-~------vl~~d~-d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK-R------VLLIDL-DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC-c------EEEEeC-CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 45666 6699999998876541100000 0 111111 111568999999865433 33677889999988876
Q ss_pred CChhHHHHHHHHHH
Q psy784 85 TAQSTFNDLSDLRE 98 (128)
Q Consensus 85 ~~~~s~~~~~~~~~ 98 (128)
+ ..+++.+..+..
T Consensus 72 ~-~~s~~~~~~~~~ 84 (104)
T cd02042 72 S-PLDLDGLEKLLE 84 (104)
T ss_pred C-HHHHHHHHHHHH
Confidence 5 445666555544
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00019 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++||||||++.++..
T Consensus 208 ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998863
No 401
>KOG0459|consensus
Probab=97.85 E-value=8.9e-06 Score=57.07 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=73.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC------CCC-----------------CC-h------hceeEEEEEECCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE------KYD-----------------PT-I------EDSYRKQVEVDGQQC 51 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~------~~~-----------------~~-~------~~~~~~~~~~~~~~~ 51 (128)
.+++++++|.-.+||||+...|+...... .|. .+ . ...-...-.+.-..-
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 36799999999999999988774311000 000 00 0 001111112222333
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.|.+.|.||+..|....-.-..++|+.++|++.-..+ -|+.=..............-...|+++||+|=+.
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 4999999999999988877788889888888774322 2333222223333323445578899999999753
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=4.1e-05 Score=54.96 Aligned_cols=63 Identities=17% Similarity=0.061 Sum_probs=36.5
Q ss_pred EEEEEeCCCccchhHhHH------hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-cEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRD------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~ 122 (128)
.+.++||+|........- .....++.+++|+|..... +.......+.. .. ..-+|+||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGTA 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCCC
Confidence 589999999665432221 1234578889999987642 22222222111 12 3467889999754
No 403
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00014 Score=57.60 Aligned_cols=112 Identities=21% Similarity=0.155 Sum_probs=61.5
Q ss_pred EEEECCCCCChHHHHHHHhcCCCCCC--CC--CChhc-eeEEEEEECCcEEEEEEEeCCCcc--------chhHhHHhh-
Q psy784 6 IVVLGSGGVGKSALTVQFVQGIFVEK--YD--PTIED-SYRKQVEVDGQQCMLEILDTAGTE--------QFTAMRDLY- 71 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~- 71 (128)
.+++|++|+||||++..- +..++-. .. ..... +....-.+.++ -.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 478999999999996532 2222211 00 00000 01111122233 5788988832 222333332
Q ss_pred --------ccCCcEEEEEEeCCChhH---------HHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 72 --------MKNGQGFILVYSITAQST---------FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 72 --------~~~~~~~i~v~d~~~~~s---------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+-.+++++.+|+.+.-+ -..+..-++++.. .-.-..|+++++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccc
Confidence 234789999999987321 1223333444444 2345789999999999975
No 404
>PRK00098 GTPase RsgA; Reviewed
Probab=97.81 E-value=3.1e-05 Score=53.00 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=36.2
Q ss_pred hccCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
...++|++++|+|+.++..+... ..|+..+. ..++|+++|+||+|+.+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~ 125 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLD 125 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCC
Confidence 46889999999999887665544 44444332 35789999999999964
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=9.5e-05 Score=56.22 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|+.|+||||.+.+|..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 478999999999999998874
No 406
>PRK08233 hypothetical protein; Provisional
Probab=97.80 E-value=2.8e-05 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+..-|++.|.+||||||++++|..
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 5667788999999999999999975
No 407
>KOG2485|consensus
Probab=97.79 E-value=2.6e-05 Score=53.01 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=34.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCC--CC----CChhceeEEEEEECCcEEEEEEEeCCC
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEK--YD----PTIEDSYRKQVEVDGQQCMLEILDTAG 60 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (128)
.++++.++|-||+|||+|+|++........ .. +.....+...+.+.++. .+.+.||||
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence 367899999999999999999875221111 00 00011112223333333 388999999
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.79 E-value=0.00016 Score=47.54 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=31.5
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCC-CcEEEEEecCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD-VPMVLVGNKCDLE 121 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~ 121 (128)
..+++|.+++|+|.+.+ ++..+........ .-+ .++.+|+||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~~-sl~taeri~~L~~----elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYK-SLRTAERIKELAE----ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHH-HHHHHHHHHHHHH----HhCCceEEEEEeeccch
Confidence 45678999999998753 5554444333332 234 7999999999965
No 409
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.78 E-value=0.00024 Score=43.19 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=60.3
Q ss_pred EECCCCCChHHHHHHHhcCCCCCCCCCCh---hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTI---EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 8 i~G~~~~GKstl~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
.-|.+|+|||++.-.+...--... ..+. .+... ....+.+.++|+|+... ......+..+|.++++.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~~~-----~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDADLGL-----ANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCCCC-----CCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCC
Confidence 447899999999877653100000 0000 00000 01115689999997543 3335678889999998887
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+ ..++......+..+.. .....++.+|+|+.+..
T Consensus 77 ~-~~s~~~~~~~l~~l~~--~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 77 E-PTSITDAYALIKKLAK--QLRVLNFRVVVNRAESP 110 (139)
T ss_pred C-hhHHHHHHHHHHHHHH--hcCCCCEEEEEeCCCCH
Confidence 6 4455555444444433 12456788999999754
No 410
>KOG2423|consensus
Probab=97.78 E-value=9.8e-06 Score=56.89 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=38.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
+++-+.++|-+|+||||++|+|...+......-..+..+...++.. .. +-++|+||-.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm-kr--IfLIDcPGvV 363 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM-KR--IFLIDCPGVV 363 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH-hc--eeEecCCCcc
Confidence 4678999999999999999999986654443222233333333332 22 6689999943
No 411
>KOG0057|consensus
Probab=97.78 E-value=7.9e-05 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+.-|++|+|++||||||+++.|++
T Consensus 377 kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999875
No 412
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.77 E-value=8.5e-05 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.8
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++||+|||||||++.+-+
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999988865
No 413
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.76 E-value=0.00031 Score=50.62 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=40.5
Q ss_pred CccchhHhHHhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 60 GTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
|..+........|++++.+|+ +.+. +..++..++..+.. ....++.+|+|-+|.+-
T Consensus 144 G~qQRVEIlKaLyr~a~iLIL----DEPTaVLTP~E~~~lf~~l~~-l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 144 GEQQRVEILKALYRGARLLIL----DEPTAVLTPQEADELFEILRR-LAAEGKTIIFITHKLKE 202 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEE----cCCcccCCHHHHHHHHHHHHH-HHHCCCEEEEEeccHHH
Confidence 455666777888999998777 4433 45777777776666 56678999999888653
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.76 E-value=3.3e-05 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
+++.|++|+||||+++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998864
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.75 E-value=3.8e-05 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++|+|++|||||||+|-+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998865
No 416
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.74 E-value=3.7e-05 Score=47.67 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=33.6
Q ss_pred hccCCcEEEEEEeCCChhH--HHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 71 YMKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.+..+|++++|+|+.++.. ...+...+. . ...+.|+++|+||+|+.+++
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~--~~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K--EKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h--ccCCCCEEEEEEchhcCCHH
Confidence 4678999999999988632 222222221 1 24468999999999997643
No 417
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=0.0001 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.+++.|++|||||||...+..-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5899999999999999988764
No 418
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.73 E-value=3e-05 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5799999999999999988874
No 419
>PRK06217 hypothetical protein; Validated
Probab=97.73 E-value=3.4e-05 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.1
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999976
No 420
>KOG0469|consensus
Probab=97.73 E-value=9.4e-05 Score=53.66 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=48.2
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
...-+.++|+||+.+|.......++-.|++++|+|..+.--.+.-..+.+.+. .++.=+++.||.|+
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~-----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA-----ERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH-----hhccceEEeehhhH
Confidence 44558899999999999999999999999999999987533222222222222 23444566799997
No 421
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.71 E-value=3.1e-05 Score=53.61 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++||+||||||+++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999987
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.71 E-value=2.1e-05 Score=49.01 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999753
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.70 E-value=3.9e-05 Score=46.65 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.0
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
++++|++|+||||+++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 424
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.70 E-value=3.8e-05 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++|+|++||||||+++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999763
No 425
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.69 E-value=3.8e-05 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++||||||+++.|..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 426
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=5.4e-05 Score=49.22 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||++.+-+-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5789999999999999988763
No 427
>PRK14531 adenylate kinase; Provisional
Probab=97.69 E-value=4.7e-05 Score=48.44 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||+..+|..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 428
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.68 E-value=4.3e-05 Score=45.50 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999873
No 429
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.67 E-value=0.00058 Score=41.81 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEe-CC-CccchhHhHHhhccCCcEEEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILD-TA-GTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~-g~~~~~~~~~~~~~~~~~~i~ 80 (128)
.++++|+.|+|||||++.+.+...+. ...+.+++.. .+.+.. .+ |+.+-.........+.+++++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~----------~G~i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPD----------EGIVTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC----------ceEEEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999998743211 1223333321 122211 33 344444555666777776665
No 430
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.67 E-value=0.00037 Score=40.45 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=56.0
Q ss_pred CCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh
Q psy784 10 GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS 88 (128)
Q Consensus 10 G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 88 (128)
+.+|+||||....|...--......+. -..... .+. .+.++|+|+..... ....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~----l~d~d~~~~~--D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVL----LVDLDLQFGD--DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEE----EEECCCCCCC--CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCC-hH
Confidence 567899999877765411000000000 000000 011 58999999865433 344678889988887665 45
Q ss_pred HHHHHHHHHHHHHhhhCCC-CCcEEEEEec
Q psy784 89 TFNDLSDLREQILRVKDTD-DVPMVLVGNK 117 (128)
Q Consensus 89 s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 117 (128)
+...+..+...+... ..+ ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 666666666666653 232 4567777775
No 431
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.66 E-value=4.8e-05 Score=48.39 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+++|+|++|+|||||+|-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 689999999999999998865
No 432
>PRK03839 putative kinase; Provisional
Probab=97.65 E-value=5.1e-05 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|.+||||||+.++|..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 433
>PRK01889 GTPase RsgA; Reviewed
Probab=97.65 E-value=4.8e-05 Score=53.31 Aligned_cols=60 Identities=25% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEE----EEeCCCccch
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLE----ILDTAGTEQF 64 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~D~~g~~~~ 64 (128)
+++++|.+|+|||||+|.+.+........-........+.+....-..+. ++|+||-..+
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhhh
No 434
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.65 E-value=5e-05 Score=47.98 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++||||||+++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999873
No 435
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.63 E-value=6.4e-05 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+...|+|.|++|||||||++.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 436
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.63 E-value=6.2e-05 Score=47.71 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++++|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 437
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.63 E-value=8.1e-05 Score=52.29 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=40.8
Q ss_pred ccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+.|..+...++++++++++|+|+.+.. ..|...+... ..+.|+++|+||+|+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~--~~~~piilV~NK~DLl~k 105 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF--VGGNPVLLVGNKIDLLPK 105 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHH--hCCCCEEEEEEchhhCCC
Confidence 5678888888889999999999997643 1222333332 136799999999999753
No 438
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=6.5e-05 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=21.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
-.++++|++|+|||+++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999998743
No 439
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.62 E-value=6.6e-05 Score=48.49 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.++|+.|+||||+++++.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.62 E-value=6e-05 Score=43.83 Aligned_cols=20 Identities=25% Similarity=0.788 Sum_probs=18.3
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy784 5 KIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~ 24 (128)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999876
No 441
>PRK12288 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00019 Score=50.13 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=39.3
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..++|.+++|++++...++..+..|+..+. ..++|.++|+||+|+.+.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~ 165 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDD 165 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCc
Confidence 466899999999988888888888876443 357899999999999763
No 442
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.61 E-value=7.7e-05 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..-+++.|++|||||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999975
No 443
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.60 E-value=6.1e-05 Score=48.40 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=18.2
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+.+.|++|||||||++.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 444
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.59 E-value=0.00043 Score=50.85 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=17.6
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+++.||+||||||.++.|..
T Consensus 48 LlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56689999999999998875
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.59 E-value=8.3e-05 Score=47.53 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.=++++|++||||||++++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34789999999999999999874
No 446
>PRK04195 replication factor C large subunit; Provisional
Probab=97.59 E-value=0.00053 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-+++.|++|+||||+++.+...
T Consensus 41 ~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 447
>KOG1970|consensus
Probab=97.58 E-value=0.00053 Score=50.20 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
..+|+|=|.-+...++....+...+..+......|+|+++|-+-.
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~ 239 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLS 239 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 356788788776555555666666666667788999999987765
No 448
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.58 E-value=0.00072 Score=47.08 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
+.++++.|++|+||||++++++..
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999863
No 449
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.58 E-value=0.00076 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988874
No 450
>PRK13949 shikimate kinase; Provisional
Probab=97.58 E-value=7.8e-05 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 451
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.57 E-value=6.2e-05 Score=44.63 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 452
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.56 E-value=8.2e-05 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 453
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=7.3e-05 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 454
>KOG3347|consensus
Probab=97.56 E-value=6e-05 Score=46.25 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...+|++.|-||+||||+..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 357899999999999999999975
No 455
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.56 E-value=7.4e-05 Score=49.96 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999976
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.56 E-value=8.7e-05 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|++|+||||+++.+.+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998863
No 457
>PTZ00301 uridine kinase; Provisional
Probab=97.55 E-value=9.7e-05 Score=48.13 Aligned_cols=24 Identities=38% Similarity=0.500 Sum_probs=21.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHh
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~ 24 (128)
|+.+=|.|-|++|||||||+++|.
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHH
Confidence 667789999999999999998774
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.55 E-value=8.9e-05 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-+|+++|++|+||||+.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35799999999999999999875
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.55 E-value=8e-05 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+.++|++|+|||||+..|.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 460
>KOG0066|consensus
Probab=97.55 E-value=0.00091 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-||+|+|+.|+|||||+..|++.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcC
Confidence 48999999999999999887763
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.55 E-value=8e-05 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.9
Q ss_pred eEEEEECCCCCChHHHHHHHh
Q psy784 4 YKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~ 24 (128)
..++++|++||||||+++++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999987
No 462
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.54 E-value=9.3e-05 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 463
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.54 E-value=9.2e-05 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.691 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++++|++|||||+|+..++.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999998875
No 464
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.53 E-value=9.4e-05 Score=48.16 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 465
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=9.6e-05 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.52 E-value=0.0001 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 467
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.52 E-value=0.0002 Score=51.30 Aligned_cols=65 Identities=20% Similarity=0.066 Sum_probs=35.3
Q ss_pred EEEEEEeCCCccchhHhHHh------hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDL------YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+.+.++||+|........-. .....+.+++|+|..... +.......+.. .- -..-+|+||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~---~v-~i~giIlTKlD~~~ 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNE---RL-GLTGVVLTKLDGDA 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHh---hC-CCCEEEEeCccCcc
Confidence 45899999995433221111 123467789999987542 22222222221 11 13467789998643
No 468
>PRK14532 adenylate kinase; Provisional
Probab=97.52 E-value=9.8e-05 Score=47.06 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 469
>PRK10867 signal recognition particle protein; Provisional
Probab=97.51 E-value=0.0024 Score=45.98 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.2
Q ss_pred eEEEEECCCCCChHHHHHHHh
Q psy784 4 YKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~ 24 (128)
.-++++|++|+||||.+-.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 468899999999999766654
No 470
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.51 E-value=0.00011 Score=45.42 Aligned_cols=44 Identities=18% Similarity=0.101 Sum_probs=30.0
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|++++|+|+.++.+.... ++.. ......++|+++|+||+|+.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcCCCCEEEEEechhcCCH
Confidence 678999999887554432 1110 1123467999999999999654
No 471
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.51 E-value=8.5e-05 Score=44.98 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998875
No 472
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.51 E-value=0.00036 Score=42.20 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
--+++.|+.|+|||||++.+...
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999874
No 473
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.50 E-value=9.9e-05 Score=47.13 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988873
No 474
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.50 E-value=0.00011 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 475
>KOG0780|consensus
Probab=97.50 E-value=0.00023 Score=50.08 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=33.1
Q ss_pred CcEEEEEEEeCCCccchhHhHHh------hccCCcEEEEEEeCCChhHHHHHHHHHHH
Q psy784 48 GQQCMLEILDTAGTEQFTAMRDL------YMKNGQGFILVYSITAQSTFNDLSDLREQ 99 (128)
Q Consensus 48 ~~~~~~~~~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~ 99 (128)
.+.+.+.++||.|.+.-....-. -.-+.|-++||.|.+-...-+.....+..
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 45566999999996643333211 23346899999999977655544444433
No 476
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.50 E-value=0.00011 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 477
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.50 E-value=8.5e-05 Score=47.38 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||++..|..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 478
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.50 E-value=0.00011 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998863
No 479
>PHA00729 NTP-binding motif containing protein
Probab=97.50 E-value=0.00013 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++.|++|+|||+|+.++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 480
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00012 Score=47.89 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 481
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.50 E-value=9.3e-05 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=18.1
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+.+.|++|||||||++.|.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999998875
No 482
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00012 Score=47.90 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 483
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.49 E-value=0.0014 Score=45.90 Aligned_cols=24 Identities=17% Similarity=0.513 Sum_probs=21.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
+.++++.|++|+||||++++++..
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc
Confidence 468999999999999999999874
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.49 E-value=0.00012 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998743
No 485
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.49 E-value=0.0001 Score=47.50 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
+++.|++|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998763
No 486
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.49 E-value=0.00012 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 487
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.49 E-value=0.0001 Score=46.63 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
|+++|++||||||++.+|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999865
No 488
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00013 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-++|+|++||||||+++.|..
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4578899999999999999975
No 489
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.49 E-value=8.4e-05 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=18.0
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|++||||||+++.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 490
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00012 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.48 E-value=0.00013 Score=47.13 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999863
No 492
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.48 E-value=0.00012 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 493
>PRK02496 adk adenylate kinase; Provisional
Probab=97.48 E-value=0.00013 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++++|++||||||++..|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 494
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.48 E-value=0.00013 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..+|+++|++||||||++..|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 495
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00012 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998873
No 496
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.48 E-value=0.00012 Score=47.44 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 497
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.48 E-value=0.0016 Score=45.14 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
.++-|.=||||||+++.++.
T Consensus 4 tvitGFLGsGKTTlL~~lL~ 23 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLA 23 (323)
T ss_pred EEEeecCCCCHHHHHHHHHh
Confidence 46779999999999999986
No 498
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.48 E-value=0.0001 Score=51.34 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++||+||||||+++.|.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999876
No 499
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.48 E-value=0.00013 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 500
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00011 Score=48.93 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+.++||.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368999999999999999988
Done!