Query psy784
Match_columns 128
No_of_seqs 102 out of 1473
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 20:12:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.5E-33 5E-38 182.3 14.4 126 1-127 11-137 (216)
2 1c1y_A RAS-related protein RAP 100.0 4.5E-31 1.5E-35 163.4 15.3 126 1-126 1-126 (167)
3 1kao_A RAP2A; GTP-binding prot 100.0 9.9E-31 3.4E-35 161.6 16.3 126 1-126 1-126 (167)
4 1u8z_A RAS-related protein RAL 100.0 2E-30 6.7E-35 160.4 16.1 126 1-126 2-127 (168)
5 3kkq_A RAS-related protein M-R 100.0 4E-30 1.4E-34 161.6 16.3 125 2-126 17-141 (183)
6 3t5g_A GTP-binding protein RHE 100.0 5.1E-30 1.8E-34 160.9 15.3 125 2-126 5-129 (181)
7 2a9k_A RAS-related protein RAL 100.0 1E-29 3.5E-34 159.8 16.1 126 1-126 16-141 (187)
8 2nzj_A GTP-binding protein REM 100.0 1.9E-29 6.5E-34 157.2 16.3 126 1-126 2-129 (175)
9 2fn4_A P23, RAS-related protei 100.0 1.1E-29 3.6E-34 159.0 15.1 125 2-126 8-132 (181)
10 2bov_A RAla, RAS-related prote 100.0 2.3E-29 7.9E-34 160.7 16.8 126 1-126 12-137 (206)
11 1ek0_A Protein (GTP-binding pr 100.0 4.6E-29 1.6E-33 154.6 16.8 122 1-123 1-123 (170)
12 1z06_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 158.0 16.6 126 1-126 18-145 (189)
13 2ce2_X GTPase HRAS; signaling 100.0 6E-29 2.1E-33 153.3 16.7 122 1-122 1-122 (166)
14 4dsu_A GTPase KRAS, isoform 2B 100.0 6.2E-29 2.1E-33 156.6 16.5 121 2-122 3-123 (189)
15 3oes_A GTPase rhebl1; small GT 100.0 9.6E-30 3.3E-34 162.4 12.8 125 2-126 23-147 (201)
16 3c5c_A RAS-like protein 12; GD 100.0 2.8E-29 9.5E-34 158.8 14.3 124 2-126 20-145 (187)
17 2atv_A RERG, RAS-like estrogen 100.0 5.4E-29 1.8E-33 158.3 15.5 124 2-126 27-150 (196)
18 3con_A GTPase NRAS; structural 100.0 1.3E-28 4.5E-33 155.6 17.1 122 1-122 19-140 (190)
19 1r2q_A RAS-related protein RAB 100.0 9.3E-29 3.2E-33 153.2 16.1 124 2-126 5-129 (170)
20 3ihw_A Centg3; RAS, centaurin, 100.0 7E-29 2.4E-33 156.7 15.7 115 1-121 18-132 (184)
21 3q72_A GTP-binding protein RAD 100.0 4.9E-29 1.7E-33 154.3 14.3 124 2-126 1-124 (166)
22 2efe_B Small GTP-binding prote 100.0 2.6E-28 9E-33 152.9 17.6 124 2-126 11-135 (181)
23 2y8e_A RAB-protein 6, GH09086P 100.0 5.6E-29 1.9E-33 155.5 14.5 125 1-126 12-137 (179)
24 1z0j_A RAB-22, RAS-related pro 100.0 1.7E-28 5.9E-33 152.1 16.2 124 2-126 5-129 (170)
25 2erx_A GTP-binding protein DI- 100.0 1.2E-28 4.1E-33 153.0 15.2 125 2-126 2-127 (172)
26 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-28 5.4E-33 153.7 15.8 115 1-121 5-121 (178)
27 2ew1_A RAS-related protein RAB 100.0 1.6E-28 5.6E-33 157.1 16.0 123 3-126 26-149 (201)
28 2hup_A RAS-related protein RAB 100.0 1.3E-28 4.6E-33 157.3 15.5 123 3-126 29-152 (201)
29 3q3j_B RHO-related GTP-binding 100.0 6E-29 2.1E-33 160.3 13.9 120 1-122 25-145 (214)
30 2bme_A RAB4A, RAS-related prot 100.0 2.2E-28 7.6E-33 153.9 15.9 123 3-126 10-133 (186)
31 3reg_A RHO-like small GTPase; 100.0 1.6E-28 5.6E-33 155.8 15.3 120 2-123 22-142 (194)
32 3tkl_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 154.2 16.6 123 3-126 16-139 (196)
33 1z0f_A RAB14, member RAS oncog 100.0 3.3E-28 1.1E-32 151.9 16.4 123 3-126 15-138 (179)
34 1mh1_A RAC1; GTP-binding, GTPa 100.0 9.2E-29 3.1E-33 155.4 13.8 121 1-123 3-124 (186)
35 1m7b_A RND3/RHOE small GTP-bin 100.0 1.7E-28 6E-33 154.6 14.6 119 2-122 6-125 (184)
36 1z08_A RAS-related protein RAB 100.0 1.1E-28 3.7E-33 153.2 13.3 124 2-126 5-129 (170)
37 1z2a_A RAS-related protein RAB 100.0 2E-28 6.8E-33 151.6 14.5 123 2-126 4-127 (168)
38 1zbd_A Rabphilin-3A; G protein 100.0 9.2E-28 3.1E-32 153.2 17.8 123 3-126 8-131 (203)
39 2il1_A RAB12; G-protein, GDP, 100.0 2E-28 6.9E-33 155.3 14.6 124 2-126 25-149 (192)
40 3q85_A GTP-binding protein REM 100.0 1.7E-28 5.8E-33 152.2 13.9 124 3-126 2-127 (169)
41 3cbq_A GTP-binding protein REM 100.0 3.1E-28 1.1E-32 155.0 15.1 125 2-126 22-148 (195)
42 2a5j_A RAS-related protein RAB 100.0 2.1E-28 7.3E-33 155.0 14.2 124 2-126 20-144 (191)
43 2fg5_A RAB-22B, RAS-related pr 100.0 4E-28 1.4E-32 153.9 15.2 124 2-126 22-146 (192)
44 2fu5_C RAS-related protein RAB 100.0 6.1E-29 2.1E-33 156.2 11.3 123 3-126 8-131 (183)
45 2bcg_Y Protein YP2, GTP-bindin 100.0 5E-28 1.7E-32 154.8 15.7 123 3-126 8-131 (206)
46 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.6E-27 5.3E-32 148.9 17.5 121 2-122 6-130 (177)
47 3bc1_A RAS-related protein RAB 100.0 9.3E-28 3.2E-32 151.6 16.6 124 3-126 11-145 (195)
48 3tw8_B RAS-related protein RAB 100.0 3E-28 1E-32 152.4 14.1 122 3-126 9-131 (181)
49 1x3s_A RAS-related protein RAB 100.0 5.1E-28 1.8E-32 153.1 15.1 121 2-122 14-135 (195)
50 2g6b_A RAS-related protein RAB 100.0 1.2E-27 4.1E-32 149.7 16.4 124 2-126 9-134 (180)
51 2g3y_A GTP-binding protein GEM 100.0 9.4E-28 3.2E-32 154.6 16.0 125 2-126 36-163 (211)
52 4gzl_A RAS-related C3 botulinu 100.0 1.4E-28 4.9E-33 157.4 12.2 121 2-124 29-150 (204)
53 2gf9_A RAS-related protein RAB 100.0 8.2E-28 2.8E-32 152.0 15.4 123 3-126 22-145 (189)
54 2j0v_A RAC-like GTP-binding pr 100.0 1.3E-28 4.5E-33 158.1 11.9 122 2-125 8-130 (212)
55 2atx_A Small GTP binding prote 100.0 7E-28 2.4E-32 152.8 14.9 119 3-123 18-137 (194)
56 2hxs_A RAB-26, RAS-related pro 100.0 2.4E-28 8.2E-33 152.7 12.5 126 1-126 4-133 (178)
57 1gwn_A RHO-related GTP-binding 100.0 5.4E-28 1.8E-32 155.0 14.4 119 2-122 27-146 (205)
58 2oil_A CATX-8, RAS-related pro 100.0 8.8E-28 3E-32 152.2 15.2 123 3-126 25-148 (193)
59 2j1l_A RHO-related GTP-binding 100.0 4.2E-28 1.4E-32 156.3 13.6 121 2-124 33-154 (214)
60 2q3h_A RAS homolog gene family 100.0 5.6E-28 1.9E-32 154.0 13.9 119 2-122 19-138 (201)
61 1g16_A RAS-related protein SEC 100.0 7.3E-28 2.5E-32 149.3 13.6 120 2-122 2-122 (170)
62 2o52_A RAS-related protein RAB 100.0 3.3E-28 1.1E-32 155.3 12.3 123 3-126 25-148 (200)
63 3dz8_A RAS-related protein RAB 100.0 1.6E-28 5.6E-33 155.5 10.6 123 3-126 23-146 (191)
64 2yc2_C IFT27, small RAB-relate 100.0 2.8E-28 9.6E-33 155.7 11.7 125 2-126 19-151 (208)
65 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-27 5.4E-32 152.2 14.8 120 2-123 24-144 (201)
66 3cpj_B GTP-binding protein YPT 100.0 7.5E-28 2.6E-32 155.9 13.4 123 3-126 13-136 (223)
67 2p5s_A RAS and EF-hand domain 100.0 1.5E-27 5E-32 152.1 14.4 119 2-121 27-146 (199)
68 2fv8_A H6, RHO-related GTP-bin 100.0 1.2E-27 4E-32 153.4 13.8 121 1-123 23-144 (207)
69 2gf0_A GTP-binding protein DI- 100.0 2.4E-27 8.2E-32 150.6 15.0 121 2-122 7-128 (199)
70 1ksh_A ARF-like protein 2; sma 100.0 2.6E-27 8.7E-32 149.2 14.6 119 2-124 17-135 (186)
71 3bwd_D RAC-like GTP-binding pr 100.0 7.4E-29 2.5E-33 155.5 7.2 122 2-125 7-129 (182)
72 2f7s_A C25KG, RAS-related prot 100.0 5.6E-28 1.9E-32 155.7 11.3 124 3-126 25-159 (217)
73 1r8s_A ADP-ribosylation factor 100.0 4.9E-27 1.7E-31 145.0 14.8 116 4-123 1-116 (164)
74 3cph_A RAS-related protein SEC 100.0 5.5E-27 1.9E-31 150.4 15.5 118 3-121 20-138 (213)
75 2cjw_A GTP-binding protein GEM 100.0 4.4E-27 1.5E-31 149.3 14.5 125 2-126 5-132 (192)
76 1ky3_A GTP-binding protein YPT 100.0 3.5E-27 1.2E-31 147.6 13.8 121 2-122 7-132 (182)
77 1zd9_A ADP-ribosylation factor 100.0 7E-27 2.4E-31 147.7 15.3 119 2-123 21-139 (188)
78 1vg8_A RAS-related protein RAB 100.0 5.3E-27 1.8E-31 149.9 14.5 121 2-122 7-131 (207)
79 4bas_A ADP-ribosylation factor 100.0 3.6E-27 1.2E-31 149.7 13.5 119 2-123 16-142 (199)
80 3clv_A RAB5 protein, putative; 99.9 1.4E-26 4.7E-31 147.2 15.5 119 3-125 7-163 (208)
81 2h57_A ADP-ribosylation factor 99.9 1.1E-26 3.7E-31 146.9 14.8 119 2-123 20-141 (190)
82 1f6b_A SAR1; gtpases, N-termin 99.9 4.7E-27 1.6E-31 149.8 12.6 117 2-122 24-140 (198)
83 1m2o_B GTP-binding protein SAR 99.9 1.6E-26 5.3E-31 146.5 14.9 117 2-122 22-138 (190)
84 1upt_A ARL1, ADP-ribosylation 99.9 2.5E-26 8.5E-31 142.6 15.1 118 2-123 6-123 (171)
85 1zj6_A ADP-ribosylation factor 99.9 6.8E-27 2.3E-31 147.5 12.4 118 2-123 15-132 (187)
86 3gj0_A GTP-binding nuclear pro 99.9 3.1E-27 1.1E-31 152.7 10.8 121 2-124 14-135 (221)
87 2b6h_A ADP-ribosylation factor 99.9 9.1E-27 3.1E-31 147.8 12.6 118 2-123 28-145 (192)
88 1fzq_A ADP-ribosylation factor 99.9 1.5E-26 5.3E-31 145.5 13.5 119 2-124 15-133 (181)
89 3l0i_B RAS-related protein RAB 99.9 2.3E-28 7.9E-33 155.8 5.1 123 3-126 33-156 (199)
90 4djt_A GTP-binding nuclear pro 99.9 5.8E-27 2E-31 151.0 11.3 124 2-126 10-135 (218)
91 2h17_A ADP-ribosylation factor 99.9 9.7E-27 3.3E-31 146.2 11.8 118 2-123 20-137 (181)
92 2x77_A ADP-ribosylation factor 99.9 1.6E-26 5.4E-31 146.0 10.6 118 2-123 21-138 (189)
93 1moz_A ARL1, ADP-ribosylation 99.9 1.6E-26 5.6E-31 145.0 10.4 118 2-123 17-134 (183)
94 2fh5_B SR-beta, signal recogni 99.9 1.5E-25 5E-30 144.1 14.5 121 2-124 6-131 (214)
95 3r7w_A Gtpase1, GTP-binding pr 99.9 2.7E-25 9.1E-30 150.3 13.5 120 2-122 2-129 (307)
96 3t1o_A Gliding protein MGLA; G 99.9 8.4E-26 2.9E-30 143.0 10.4 118 3-123 14-150 (198)
97 2wkq_A NPH1-1, RAS-related C3 99.9 2.5E-25 8.6E-30 151.0 13.3 119 3-123 155-274 (332)
98 2zej_A Dardarin, leucine-rich 99.9 2.3E-26 7.9E-31 144.9 7.3 121 3-125 2-129 (184)
99 3th5_A RAS-related C3 botulinu 99.9 6.3E-28 2.2E-32 154.2 0.0 120 2-123 29-149 (204)
100 2f9l_A RAB11B, member RAS onco 99.9 1.1E-24 3.6E-29 138.8 14.9 123 3-126 5-128 (199)
101 3llu_A RAS-related GTP-binding 99.9 3.5E-25 1.2E-29 140.8 10.3 119 2-122 19-143 (196)
102 3o47_A ADP-ribosylation factor 99.9 6.2E-25 2.1E-29 149.7 10.8 119 2-124 164-282 (329)
103 3lvq_E ARF-GAP with SH3 domain 99.9 4.5E-24 1.5E-28 152.2 15.3 118 2-123 321-438 (497)
104 1oix_A RAS-related protein RAB 99.9 5.4E-24 1.8E-28 135.0 13.8 122 3-125 29-151 (191)
105 2ged_A SR-beta, signal recogni 99.9 1E-24 3.6E-29 137.9 8.2 119 3-126 48-174 (193)
106 2wji_A Ferrous iron transport 99.9 7.8E-24 2.7E-28 131.3 11.9 116 1-125 1-125 (165)
107 1nrj_B SR-beta, signal recogni 99.9 2.5E-24 8.4E-29 138.7 8.9 116 3-126 12-138 (218)
108 2gj8_A MNME, tRNA modification 99.9 7.9E-24 2.7E-28 132.2 10.1 117 2-122 3-129 (172)
109 2lkc_A Translation initiation 99.9 1.1E-23 3.6E-28 131.5 10.4 112 2-123 7-122 (178)
110 3c5h_A Glucocorticoid receptor 99.9 5.2E-25 1.8E-29 145.4 2.9 124 2-125 18-215 (255)
111 2qu8_A Putative nucleolar GTP- 99.9 7.6E-23 2.6E-27 132.8 12.8 120 2-126 28-160 (228)
112 2dyk_A GTP-binding protein; GT 99.9 1.3E-22 4.3E-27 124.7 12.1 113 4-123 2-123 (161)
113 3r7w_B Gtpase2, GTP-binding pr 99.9 1.4E-23 4.7E-28 142.1 8.0 113 5-123 1-121 (331)
114 3i8s_A Ferrous iron transport 99.9 3E-23 1E-27 138.3 9.5 115 1-124 1-128 (274)
115 1svi_A GTP-binding protein YSX 99.9 7.7E-23 2.6E-27 129.4 9.6 116 3-126 23-152 (195)
116 2wjg_A FEOB, ferrous iron tran 99.9 7.7E-23 2.6E-27 128.8 9.6 116 1-125 5-129 (188)
117 1wf3_A GTP-binding protein; GT 99.9 1.4E-21 4.9E-26 131.7 15.4 118 2-125 6-134 (301)
118 3def_A T7I23.11 protein; chlor 99.9 5E-22 1.7E-26 131.6 11.3 120 1-123 34-166 (262)
119 3dpu_A RAB family protein; roc 99.9 2.3E-22 7.9E-27 144.6 10.0 121 1-126 39-168 (535)
120 3iev_A GTP-binding protein ERA 99.9 1.5E-21 5E-26 132.1 13.3 114 3-121 10-135 (308)
121 2cxx_A Probable GTP-binding pr 99.9 8.1E-23 2.8E-27 128.7 6.7 116 4-124 2-138 (190)
122 3iby_A Ferrous iron transport 99.9 1.3E-22 4.4E-27 134.1 7.4 112 4-124 2-126 (256)
123 3a1s_A Iron(II) transport prot 99.9 5.2E-22 1.8E-26 131.3 10.2 116 1-125 3-127 (258)
124 3lxx_A GTPase IMAP family memb 99.9 1.5E-21 5.2E-26 127.5 12.1 121 2-126 28-163 (239)
125 3gee_A MNME, tRNA modification 99.9 3.8E-22 1.3E-26 141.5 9.7 118 3-125 233-360 (476)
126 3k53_A Ferrous iron transport 99.9 1E-21 3.5E-26 130.6 9.4 116 1-124 1-125 (271)
127 3b1v_A Ferrous iron uptake tra 99.9 1E-21 3.5E-26 130.7 8.4 112 3-124 3-123 (272)
128 3pqc_A Probable GTP-binding pr 99.9 3.1E-21 1E-25 121.8 10.2 112 3-124 23-149 (195)
129 2hjg_A GTP-binding protein ENG 99.9 1E-21 3.4E-26 138.3 8.4 116 3-125 175-303 (436)
130 2hjg_A GTP-binding protein ENG 99.9 2E-21 6.9E-26 136.8 8.6 116 1-123 1-126 (436)
131 3lxw_A GTPase IMAP family memb 99.8 3.6E-20 1.2E-24 121.7 13.1 119 2-123 20-154 (247)
132 1mky_A Probable GTP-binding pr 99.8 5.1E-20 1.7E-24 129.7 13.7 112 4-122 2-124 (439)
133 4dhe_A Probable GTP-binding pr 99.8 2.9E-21 9.7E-26 124.6 6.8 116 3-125 29-161 (223)
134 4fid_A G protein alpha subunit 99.8 3.9E-21 1.3E-25 130.9 7.4 75 49-123 159-243 (340)
135 1h65_A Chloroplast outer envel 99.8 1.2E-20 4.1E-25 125.4 9.6 120 2-124 38-170 (270)
136 2xtp_A GTPase IMAP family memb 99.8 2.2E-19 7.5E-24 118.6 14.2 118 2-123 21-154 (260)
137 1cip_A Protein (guanine nucleo 99.8 2.3E-20 8E-25 128.0 9.7 73 50-122 192-274 (353)
138 3geh_A MNME, tRNA modification 99.8 2.2E-20 7.4E-25 132.1 9.5 114 3-125 224-347 (462)
139 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-20 3.9E-25 129.1 7.9 118 5-123 160-289 (342)
140 1xzp_A Probable tRNA modificat 99.8 2.4E-20 8.2E-25 132.5 9.3 112 3-123 243-365 (482)
141 2xtz_A Guanine nucleotide-bind 99.8 3.5E-21 1.2E-25 132.1 4.5 75 49-123 181-265 (354)
142 3ohm_A Guanine nucleotide-bind 99.8 9.8E-21 3.3E-25 128.5 6.6 75 50-124 166-250 (327)
143 4dcu_A GTP-binding protein ENG 99.8 3.8E-20 1.3E-24 130.9 9.3 116 3-125 195-323 (456)
144 3p26_A Elongation factor 1 alp 99.8 4.6E-20 1.6E-24 131.3 9.8 118 2-123 32-186 (483)
145 4dcu_A GTP-binding protein ENG 99.8 1.8E-20 6.2E-25 132.6 7.5 116 1-123 21-146 (456)
146 3sjy_A Translation initiation 99.8 3.8E-19 1.3E-23 124.1 12.5 120 2-124 7-145 (403)
147 3qq5_A Small GTP-binding prote 99.8 5.8E-20 2E-24 128.6 7.8 115 3-125 34-157 (423)
148 2ywe_A GTP-binding protein LEP 99.8 9.4E-19 3.2E-23 126.9 14.0 116 3-123 6-140 (600)
149 2qtf_A Protein HFLX, GTP-bindi 99.8 1E-18 3.5E-23 120.4 13.6 116 4-123 179-307 (364)
150 2e87_A Hypothetical protein PH 99.8 7.5E-19 2.6E-23 120.9 12.9 118 3-124 167-296 (357)
151 1ega_A Protein (GTP-binding pr 99.8 4.5E-19 1.5E-23 119.5 11.5 113 2-122 7-130 (301)
152 3j2k_7 ERF3, eukaryotic polype 99.8 7.6E-19 2.6E-23 123.7 12.8 118 2-122 16-169 (439)
153 3cb4_D GTP-binding protein LEP 99.8 5.5E-19 1.9E-23 128.2 12.3 115 4-123 5-138 (599)
154 3izq_1 HBS1P, elongation facto 99.8 3.1E-19 1.1E-23 130.0 10.8 119 2-122 166-319 (611)
155 3t5d_A Septin-7; GTP-binding p 99.8 1.9E-19 6.5E-24 119.8 9.0 117 3-124 8-160 (274)
156 1wb1_A Translation elongation 99.8 4.1E-19 1.4E-23 126.3 11.0 113 1-123 17-140 (482)
157 2c78_A Elongation factor TU-A; 99.8 1.1E-18 3.7E-23 121.9 12.4 114 2-122 10-142 (405)
158 3tr5_A RF-3, peptide chain rel 99.8 6.7E-20 2.3E-24 131.5 6.4 114 3-123 13-149 (528)
159 1azs_C GS-alpha; complex (lyas 99.8 2.3E-19 7.7E-24 124.7 8.1 74 51-124 217-300 (402)
160 1zcb_A G alpha I/13; GTP-bindi 99.8 3.7E-19 1.3E-23 122.5 8.9 73 50-122 200-282 (362)
161 1mky_A Probable GTP-binding pr 99.8 9.9E-19 3.4E-23 123.2 11.1 115 3-124 180-308 (439)
162 1d2e_A Elongation factor TU (E 99.8 1.1E-18 3.6E-23 121.7 10.8 116 2-122 2-133 (397)
163 1jny_A EF-1-alpha, elongation 99.8 1.4E-18 4.9E-23 122.3 11.4 118 2-122 5-158 (435)
164 3izy_P Translation initiation 99.8 5E-21 1.7E-25 137.2 -2.1 115 2-123 3-119 (537)
165 1f60_A Elongation factor EEF1A 99.8 3.5E-18 1.2E-22 120.9 12.2 115 2-122 6-159 (458)
166 2h5e_A Peptide chain release f 99.8 4.2E-18 1.4E-22 122.3 12.6 116 2-124 12-150 (529)
167 1zun_B Sulfate adenylate trans 99.8 1.3E-17 4.4E-22 117.4 14.6 116 3-122 24-171 (434)
168 1r5b_A Eukaryotic peptide chai 99.8 3E-19 1E-23 126.6 6.2 118 2-122 42-195 (467)
169 1s0u_A EIF-2-gamma, translatio 99.8 1.6E-17 5.5E-22 116.1 14.1 116 2-124 7-151 (408)
170 1dar_A EF-G, elongation factor 99.8 8.7E-18 3E-22 123.9 13.3 114 3-123 12-144 (691)
171 1g7s_A Translation initiation 99.8 9.7E-19 3.3E-23 126.9 7.5 113 2-122 4-136 (594)
172 2aka_B Dynamin-1; fusion prote 99.8 8.6E-18 2.9E-22 112.7 11.4 117 3-124 26-208 (299)
173 2xex_A Elongation factor G; GT 99.8 1.2E-17 4E-22 123.2 12.5 114 3-123 10-142 (693)
174 1zo1_I IF2, translation initia 99.8 2.1E-19 7.3E-24 127.9 2.9 114 2-122 3-117 (501)
175 1jwy_B Dynamin A GTPase domain 99.8 7.4E-18 2.5E-22 113.9 10.3 69 52-124 132-214 (315)
176 2qag_A Septin-2, protein NEDD5 99.8 3.8E-19 1.3E-23 122.5 3.8 120 3-126 37-192 (361)
177 2qpt_A EH domain-containing pr 99.7 2.1E-18 7.3E-23 124.3 7.2 117 3-125 65-235 (550)
178 2elf_A Protein translation elo 99.7 1.9E-18 6.4E-23 119.4 6.7 103 5-123 23-127 (370)
179 1kk1_A EIF2gamma; initiation o 99.7 2.3E-17 7.7E-22 115.4 11.9 114 3-123 10-152 (410)
180 1n0u_A EF-2, elongation factor 99.7 1.1E-17 3.7E-22 125.6 10.4 114 3-121 19-163 (842)
181 2rdo_7 EF-G, elongation factor 99.7 5E-17 1.7E-21 120.0 13.6 116 3-123 10-149 (704)
182 2j69_A Bacterial dynamin-like 99.7 2E-17 6.9E-22 122.0 11.0 118 2-123 68-245 (695)
183 3t34_A Dynamin-related protein 99.7 8.1E-17 2.8E-21 110.9 11.9 117 4-124 35-219 (360)
184 3avx_A Elongation factor TS, e 99.7 2E-17 6.9E-22 126.1 9.3 116 2-122 295-426 (1289)
185 1wxq_A GTP-binding protein; st 99.7 4.4E-17 1.5E-21 113.4 9.6 84 4-87 1-114 (397)
186 3mca_A HBS1, elongation factor 99.7 2.9E-19 9.9E-24 129.7 -3.3 116 2-122 176-329 (592)
187 4a9a_A Ribosome-interacting GT 99.7 2.9E-16 9.8E-21 108.4 10.7 115 4-122 73-196 (376)
188 2dy1_A Elongation factor G; tr 99.7 3.7E-16 1.3E-20 114.9 11.9 114 3-121 9-139 (665)
189 3vqt_A RF-3, peptide chain rel 99.7 6.7E-16 2.3E-20 111.3 12.8 113 5-124 33-168 (548)
190 1pui_A ENGB, probable GTP-bind 99.7 4.5E-16 1.6E-20 99.3 9.6 114 2-123 25-152 (210)
191 2x2e_A Dynamin-1; nitration, h 99.6 3.3E-15 1.1E-19 102.6 11.5 117 3-124 31-213 (353)
192 1jal_A YCHF protein; nucleotid 99.6 3.3E-15 1.1E-19 102.7 11.2 84 3-86 2-108 (363)
193 1udx_A The GTP-binding protein 99.6 6.2E-15 2.1E-19 103.1 10.6 117 5-123 159-284 (416)
194 4fn5_A EF-G 1, elongation fact 99.6 1.7E-14 5.9E-19 106.8 13.1 114 5-123 15-152 (709)
195 2qag_C Septin-7; cell cycle, c 99.6 2.6E-15 8.7E-20 105.1 6.7 119 3-126 31-185 (418)
196 3j25_A Tetracycline resistance 99.5 4.9E-15 1.7E-19 108.5 5.7 113 5-124 4-135 (638)
197 2dby_A GTP-binding protein; GD 99.5 2.2E-13 7.6E-18 94.0 11.1 83 4-86 2-111 (368)
198 2qnr_A Septin-2, protein NEDD5 99.5 1.4E-14 4.8E-19 97.6 4.2 118 3-125 18-172 (301)
199 3zvr_A Dynamin-1; hydrolase, D 99.5 8.5E-13 2.9E-17 97.9 13.4 116 3-123 51-232 (772)
200 2ohf_A Protein OLA1, GTP-bindi 99.5 7.7E-14 2.6E-18 96.8 6.6 87 3-89 22-131 (396)
201 1u0l_A Probable GTPase ENGC; p 99.4 1.4E-14 4.7E-19 97.7 0.3 99 18-125 32-132 (301)
202 1yrb_A ATP(GTP)binding protein 99.3 1.9E-12 6.5E-17 85.2 6.4 73 51-124 109-187 (262)
203 3p32_A Probable GTPase RV1496/ 99.3 1.9E-13 6.4E-18 94.0 1.6 61 51-123 172-232 (355)
204 2www_A Methylmalonic aciduria 99.3 2.6E-12 9E-17 88.1 7.2 59 52-122 168-226 (349)
205 2p67_A LAO/AO transport system 99.3 1.9E-12 6.4E-17 88.6 3.4 61 51-123 149-209 (341)
206 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 7.8E-11 2.7E-15 81.8 9.1 84 3-86 20-127 (392)
207 3ec1_A YQEH GTPase; atnos1, at 99.2 2.8E-12 9.6E-17 88.6 0.6 113 3-125 162-291 (369)
208 2qag_B Septin-6, protein NEDD5 99.1 4.5E-10 1.5E-14 78.7 10.2 116 4-125 43-193 (427)
209 2wsm_A Hydrogenase expression/ 99.1 2.1E-11 7E-16 78.3 2.7 108 3-122 30-168 (221)
210 3sop_A Neuronal-specific septi 99.1 5.6E-11 1.9E-15 78.9 4.7 23 3-25 2-24 (270)
211 3h2y_A GTPase family protein; 99.1 1.4E-11 4.8E-16 85.1 0.0 113 3-125 160-290 (368)
212 2hf9_A Probable hydrogenase ni 99.0 5.2E-13 1.8E-17 86.1 -8.7 26 3-28 38-63 (226)
213 2qm8_A GTPase/ATPase; G protei 99.0 6.1E-10 2.1E-14 76.1 6.0 60 51-122 148-207 (337)
214 2j37_W Signal recognition part 98.9 1.6E-08 5.4E-13 72.4 9.4 65 51-123 184-255 (504)
215 1puj_A YLQF, conserved hypothe 98.9 3.7E-09 1.3E-13 70.6 5.8 55 3-62 120-176 (282)
216 3cnl_A YLQF, putative uncharac 98.8 4E-09 1.4E-13 69.7 3.6 55 4-63 100-156 (262)
217 2yv5_A YJEQ protein; hydrolase 98.7 8.3E-09 2.8E-13 69.5 3.9 60 61-124 66-126 (302)
218 1f5n_A Interferon-induced guan 98.7 1.8E-08 6.1E-13 73.3 5.7 61 3-63 38-103 (592)
219 3l82_B F-box only protein 4; T 98.6 3E-08 1E-12 63.3 4.1 64 58-122 109-177 (227)
220 1tq4_A IIGP1, interferon-induc 98.6 2.5E-07 8.4E-12 64.8 8.9 111 4-121 70-188 (413)
221 3szr_A Interferon-induced GTP- 98.6 2.8E-07 9.6E-12 67.5 9.0 23 5-27 47-69 (608)
222 2v3c_C SRP54, signal recogniti 98.6 3.3E-07 1.1E-11 64.6 8.3 64 51-122 181-252 (432)
223 3dm5_A SRP54, signal recogniti 98.4 5.6E-07 1.9E-11 63.5 7.1 66 51-123 183-254 (443)
224 3l2o_B F-box only protein 4; s 98.4 1.3E-07 4.3E-12 63.2 2.8 64 58-122 194-262 (312)
225 1j8m_F SRP54, signal recogniti 98.2 9.4E-06 3.2E-10 54.5 7.9 64 51-122 181-253 (297)
226 3kl4_A SRP54, signal recogniti 98.2 1.4E-06 4.9E-11 61.3 3.8 65 51-122 180-252 (433)
227 1bif_A 6-phosphofructo-2-kinas 98.1 1.2E-07 4.2E-12 67.3 -2.6 96 3-102 39-147 (469)
228 3q5d_A Atlastin-1; G protein, 98.1 7.2E-06 2.5E-10 58.0 6.4 21 5-25 69-89 (447)
229 3h2y_A GTPase family protein; 98.0 4.9E-06 1.7E-10 57.5 4.2 57 60-123 55-111 (368)
230 1ye8_A Protein THEP1, hypothet 98.0 5.2E-06 1.8E-10 51.7 3.3 21 5-25 2-22 (178)
231 1kgd_A CASK, peripheral plasma 97.9 6.9E-06 2.4E-10 51.0 3.4 22 4-25 6-27 (180)
232 1lvg_A Guanylate kinase, GMP k 97.9 6.6E-06 2.2E-10 52.0 3.0 22 4-25 5-26 (198)
233 1t9h_A YLOQ, probable GTPase E 97.8 4.5E-06 1.5E-10 56.3 1.5 23 4-26 174-196 (307)
234 3ney_A 55 kDa erythrocyte memb 97.8 1.2E-05 4.2E-10 50.9 3.4 24 2-25 18-41 (197)
235 1kht_A Adenylate kinase; phosp 97.8 1.2E-05 4.2E-10 49.9 3.2 25 1-25 1-25 (192)
236 3tr0_A Guanylate kinase, GMP k 97.8 1.1E-05 3.9E-10 50.7 3.1 22 4-25 8-29 (205)
237 3ec1_A YQEH GTPase; atnos1, at 97.8 8.5E-06 2.9E-10 56.3 2.7 60 56-123 54-113 (369)
238 3a00_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 50.4 2.9 20 6-25 4-23 (186)
239 1znw_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 51.2 3.0 21 5-25 22-42 (207)
240 1puj_A YLQF, conserved hypothe 97.8 2.3E-05 7.8E-10 52.3 4.5 62 55-123 3-65 (282)
241 1zp6_A Hypothetical protein AT 97.8 1.2E-05 4.1E-10 50.1 2.9 23 4-26 10-32 (191)
242 3c8u_A Fructokinase; YP_612366 97.8 1.6E-05 5.3E-10 50.5 3.4 23 3-25 22-44 (208)
243 1s96_A Guanylate kinase, GMP k 97.8 1.3E-05 4.5E-10 51.5 3.1 21 5-25 18-38 (219)
244 1z6g_A Guanylate kinase; struc 97.8 1.3E-05 4.4E-10 51.4 3.0 21 5-25 25-45 (218)
245 1tev_A UMP-CMP kinase; ploop, 97.8 1.8E-05 6.2E-10 49.2 3.5 25 1-25 1-25 (196)
246 2plr_A DTMP kinase, probable t 97.8 2.2E-05 7.6E-10 49.5 3.7 25 1-25 2-26 (213)
247 4gp7_A Metallophosphoesterase; 97.8 1.4E-05 4.8E-10 49.3 2.7 18 5-22 11-28 (171)
248 3tau_A Guanylate kinase, GMP k 97.7 1.8E-05 6.1E-10 50.3 3.1 23 4-26 9-31 (208)
249 2xxa_A Signal recognition part 97.7 0.0001 3.5E-09 52.0 7.1 64 51-122 184-254 (433)
250 2j41_A Guanylate kinase; GMP, 97.7 2.2E-05 7.6E-10 49.4 3.4 24 3-26 6-29 (207)
251 1qhx_A CPT, protein (chloramph 97.7 2.4E-05 8.2E-10 48.1 3.4 25 1-25 1-25 (178)
252 3tif_A Uncharacterized ABC tra 97.7 1.9E-05 6.4E-10 51.3 2.9 21 5-25 33-53 (235)
253 1ex7_A Guanylate kinase; subst 97.7 2.3E-05 7.8E-10 49.2 3.1 20 6-25 4-23 (186)
254 3cm0_A Adenylate kinase; ATP-b 97.7 3.6E-05 1.2E-09 47.7 3.8 24 2-25 3-26 (186)
255 1knq_A Gluconate kinase; ALFA/ 97.7 3.3E-05 1.1E-09 47.4 3.6 23 3-25 8-30 (175)
256 2qor_A Guanylate kinase; phosp 97.7 2.6E-05 8.7E-10 49.3 3.1 22 4-25 13-34 (204)
257 1kag_A SKI, shikimate kinase I 97.7 2.7E-05 9.3E-10 47.7 3.1 22 4-25 5-26 (173)
258 1htw_A HI0065; nucleotide-bind 97.7 2.8E-05 9.6E-10 47.5 3.0 22 5-26 35-56 (158)
259 3asz_A Uridine kinase; cytidin 97.7 3.1E-05 1.1E-09 49.0 3.2 23 3-25 6-28 (211)
260 2pcj_A ABC transporter, lipopr 97.6 2.5E-05 8.7E-10 50.3 2.7 22 5-26 32-53 (224)
261 2bdt_A BH3686; alpha-beta prot 97.6 3E-05 1E-09 48.3 3.0 21 5-25 4-24 (189)
262 2rcn_A Probable GTPase ENGC; Y 97.6 3.2E-05 1.1E-09 53.2 3.3 23 5-27 217-239 (358)
263 3lw7_A Adenylate kinase relate 97.6 3.2E-05 1.1E-09 47.1 3.0 20 4-23 2-21 (179)
264 1cke_A CK, MSSA, protein (cyti 97.6 3.5E-05 1.2E-09 49.2 3.3 22 4-25 6-27 (227)
265 3kb2_A SPBC2 prophage-derived 97.6 3.3E-05 1.1E-09 47.1 2.9 21 5-25 3-23 (173)
266 2onk_A Molybdate/tungstate ABC 97.6 3.4E-05 1.2E-09 50.3 3.1 22 5-26 26-47 (240)
267 4eun_A Thermoresistant glucoki 97.6 3.5E-05 1.2E-09 48.6 3.1 22 4-25 30-51 (200)
268 3gfo_A Cobalt import ATP-bindi 97.6 3.2E-05 1.1E-09 51.4 3.0 22 5-26 36-57 (275)
269 1b0u_A Histidine permease; ABC 97.6 3.4E-05 1.1E-09 50.9 3.0 22 5-26 34-55 (262)
270 2cbz_A Multidrug resistance-as 97.6 3.8E-05 1.3E-09 49.9 3.1 22 5-26 33-54 (237)
271 4g1u_C Hemin import ATP-bindin 97.6 3.5E-05 1.2E-09 51.0 3.0 22 5-26 39-60 (266)
272 2bbw_A Adenylate kinase 4, AK4 97.6 4.2E-05 1.4E-09 49.7 3.3 21 4-24 28-48 (246)
273 1ly1_A Polynucleotide kinase; 97.6 4E-05 1.4E-09 47.1 3.0 22 4-25 3-24 (181)
274 2eyu_A Twitching motility prot 97.6 3.8E-05 1.3E-09 50.6 3.0 21 5-25 27-47 (261)
275 1sgw_A Putative ABC transporte 97.6 3.8E-05 1.3E-09 49.2 3.0 22 5-26 37-58 (214)
276 1mv5_A LMRA, multidrug resista 97.6 4.4E-05 1.5E-09 49.8 3.2 21 5-25 30-50 (243)
277 1g6h_A High-affinity branched- 97.6 3.8E-05 1.3E-09 50.5 2.9 22 5-26 35-56 (257)
278 2ff7_A Alpha-hemolysin translo 97.6 4.3E-05 1.5E-09 50.0 3.1 22 5-26 37-58 (247)
279 2v9p_A Replication protein E1; 97.6 4.3E-05 1.5E-09 51.5 3.1 21 5-25 128-148 (305)
280 3t61_A Gluconokinase; PSI-biol 97.6 4.4E-05 1.5E-09 48.1 3.0 21 5-25 20-40 (202)
281 3vaa_A Shikimate kinase, SK; s 97.6 5.1E-05 1.7E-09 47.7 3.3 22 4-25 26-47 (199)
282 2pze_A Cystic fibrosis transme 97.6 4.9E-05 1.7E-09 49.1 3.2 22 5-26 36-57 (229)
283 2olj_A Amino acid ABC transpor 97.6 4.3E-05 1.5E-09 50.5 3.0 22 5-26 52-73 (263)
284 2d2e_A SUFC protein; ABC-ATPas 97.6 4.6E-05 1.6E-09 49.9 3.1 22 5-26 31-52 (250)
285 2i3b_A HCR-ntpase, human cance 97.6 4.2E-05 1.4E-09 48.1 2.7 21 5-25 3-23 (189)
286 1y63_A LMAJ004144AAA protein; 97.6 5.6E-05 1.9E-09 47.0 3.3 24 3-26 10-33 (184)
287 1ji0_A ABC transporter; ATP bi 97.6 4.4E-05 1.5E-09 49.7 2.9 22 5-26 34-55 (240)
288 3uie_A Adenylyl-sulfate kinase 97.6 6.1E-05 2.1E-09 47.4 3.5 22 4-25 26-47 (200)
289 2zu0_C Probable ATP-dependent 97.6 5E-05 1.7E-09 50.2 3.1 22 5-26 48-69 (267)
290 2qi9_C Vitamin B12 import ATP- 97.6 4.7E-05 1.6E-09 49.9 3.0 22 5-26 28-49 (249)
291 1vpl_A ABC transporter, ATP-bi 97.5 4.7E-05 1.6E-09 50.1 3.0 22 5-26 43-64 (256)
292 3fb4_A Adenylate kinase; psych 97.5 5.1E-05 1.8E-09 48.2 3.1 21 5-25 2-22 (216)
293 3ec2_A DNA replication protein 97.5 4E-05 1.4E-09 47.4 2.5 22 4-25 39-60 (180)
294 3b85_A Phosphate starvation-in 97.5 4.6E-05 1.6E-09 48.6 2.8 22 5-26 24-45 (208)
295 2ghi_A Transport protein; mult 97.5 5.3E-05 1.8E-09 49.9 3.1 22 5-26 48-69 (260)
296 2ihy_A ABC transporter, ATP-bi 97.5 5.6E-05 1.9E-09 50.3 3.2 22 5-26 49-70 (279)
297 3dl0_A Adenylate kinase; phosp 97.5 5.7E-05 1.9E-09 48.0 3.1 21 5-25 2-22 (216)
298 2ixe_A Antigen peptide transpo 97.5 5.7E-05 1.9E-09 50.1 3.1 22 5-26 47-68 (271)
299 1u0l_A Probable GTPase ENGC; p 97.5 6.2E-05 2.1E-09 50.6 3.3 22 5-26 171-192 (301)
300 2if2_A Dephospho-COA kinase; a 97.5 5.5E-05 1.9E-09 47.6 2.9 22 4-25 2-23 (204)
301 2v54_A DTMP kinase, thymidylat 97.5 7.2E-05 2.5E-09 46.9 3.4 25 2-26 3-27 (204)
302 1np6_A Molybdopterin-guanine d 97.5 6.5E-05 2.2E-09 46.6 3.1 21 5-25 8-28 (174)
303 3lnc_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 49.6 1.8 21 5-25 29-50 (231)
304 2nq2_C Hypothetical ABC transp 97.5 5.7E-05 1.9E-09 49.6 2.9 22 5-26 33-54 (253)
305 1jjv_A Dephospho-COA kinase; P 97.5 8.3E-05 2.8E-09 46.9 3.6 22 4-25 3-24 (206)
306 2yz2_A Putative ABC transporte 97.5 5.7E-05 2E-09 49.9 2.9 22 5-26 35-56 (266)
307 2ehv_A Hypothetical protein PH 97.5 6.5E-05 2.2E-09 48.5 3.1 20 5-24 32-51 (251)
308 3aez_A Pantothenate kinase; tr 97.5 8E-05 2.7E-09 50.3 3.6 22 4-25 91-112 (312)
309 2jaq_A Deoxyguanosine kinase; 97.5 7.6E-05 2.6E-09 46.7 3.3 21 5-25 2-22 (205)
310 3iij_A Coilin-interacting nucl 97.5 5.9E-05 2E-09 46.6 2.7 23 3-25 11-33 (180)
311 2yv5_A YJEQ protein; hydrolase 97.5 6.8E-05 2.3E-09 50.4 3.2 21 4-24 166-186 (302)
312 1lw7_A Transcriptional regulat 97.5 5.1E-05 1.7E-09 52.2 2.6 22 4-25 171-192 (365)
313 1nks_A Adenylate kinase; therm 97.5 7E-05 2.4E-09 46.4 3.0 21 5-25 3-23 (194)
314 2rhm_A Putative kinase; P-loop 97.5 8E-05 2.7E-09 46.3 3.2 23 3-25 5-27 (193)
315 3trf_A Shikimate kinase, SK; a 97.5 7.8E-05 2.7E-09 46.1 3.1 22 4-25 6-27 (185)
316 3tlx_A Adenylate kinase 2; str 97.5 9.1E-05 3.1E-09 48.2 3.5 24 2-25 28-51 (243)
317 2yvu_A Probable adenylyl-sulfa 97.5 0.0001 3.5E-09 45.7 3.6 24 2-25 12-35 (186)
318 4a74_A DNA repair and recombin 97.5 6.2E-05 2.1E-09 48.0 2.7 21 5-25 27-47 (231)
319 2pjz_A Hypothetical protein ST 97.5 7.8E-05 2.7E-09 49.2 3.2 23 5-27 32-54 (263)
320 2jeo_A Uridine-cytidine kinase 97.5 9.3E-05 3.2E-09 48.1 3.4 23 3-25 25-47 (245)
321 3fvq_A Fe(3+) IONS import ATP- 97.4 6.8E-05 2.3E-09 51.6 2.8 22 5-26 32-53 (359)
322 3nh6_A ATP-binding cassette SU 97.4 4.5E-05 1.5E-09 51.4 1.8 21 5-25 82-102 (306)
323 1gvn_B Zeta; postsegregational 97.4 0.00011 3.6E-09 49.1 3.6 23 3-25 33-55 (287)
324 2qt1_A Nicotinamide riboside k 97.4 0.0001 3.4E-09 46.6 3.3 24 3-26 21-44 (207)
325 2vli_A Antibiotic resistance p 97.4 6E-05 2.1E-09 46.5 2.2 25 1-25 3-27 (183)
326 4e22_A Cytidylate kinase; P-lo 97.4 0.0001 3.6E-09 48.2 3.4 22 3-24 27-48 (252)
327 2c95_A Adenylate kinase 1; tra 97.4 9.2E-05 3.1E-09 46.1 3.0 23 3-25 9-31 (196)
328 2cdn_A Adenylate kinase; phosp 97.4 0.00011 3.7E-09 46.2 3.3 23 3-25 20-42 (201)
329 1via_A Shikimate kinase; struc 97.4 8.2E-05 2.8E-09 45.7 2.7 21 5-25 6-26 (175)
330 1aky_A Adenylate kinase; ATP:A 97.4 0.0001 3.6E-09 47.0 3.3 23 3-25 4-26 (220)
331 2kjq_A DNAA-related protein; s 97.4 7E-05 2.4E-09 45.2 2.3 21 5-25 38-58 (149)
332 3rlf_A Maltose/maltodextrin im 97.4 9.2E-05 3.1E-09 51.4 3.1 22 5-26 31-52 (381)
333 2f1r_A Molybdopterin-guanine d 97.4 3.4E-05 1.2E-09 47.8 0.9 21 5-25 4-24 (171)
334 1z47_A CYSA, putative ABC-tran 97.4 9.1E-05 3.1E-09 51.0 3.1 22 5-26 43-64 (355)
335 3sr0_A Adenylate kinase; phosp 97.4 0.0001 3.6E-09 46.9 3.1 21 5-25 2-22 (206)
336 3jvv_A Twitching mobility prot 97.4 9.1E-05 3.1E-09 51.0 3.0 21 5-25 125-145 (356)
337 2wwf_A Thymidilate kinase, put 97.4 8.8E-05 3E-09 46.8 2.7 23 3-25 10-32 (212)
338 3tui_C Methionine import ATP-b 97.4 0.0001 3.4E-09 50.9 3.1 22 5-26 56-77 (366)
339 2x8a_A Nuclear valosin-contain 97.4 9.9E-05 3.4E-09 48.9 3.0 20 6-25 47-66 (274)
340 2yyz_A Sugar ABC transporter, 97.4 9.8E-05 3.3E-09 50.9 3.1 22 5-26 31-52 (359)
341 2it1_A 362AA long hypothetical 97.4 0.0001 3.5E-09 50.8 3.1 22 5-26 31-52 (362)
342 3co5_A Putative two-component 97.4 0.00038 1.3E-08 41.5 5.3 23 4-26 28-50 (143)
343 1e4v_A Adenylate kinase; trans 97.4 9.8E-05 3.4E-09 46.9 2.8 21 5-25 2-22 (214)
344 2bbs_A Cystic fibrosis transme 97.4 9.6E-05 3.3E-09 49.5 2.9 22 5-26 66-87 (290)
345 2ze6_A Isopentenyl transferase 97.4 0.00011 3.6E-09 48.2 3.0 21 5-25 3-23 (253)
346 1odf_A YGR205W, hypothetical 3 97.4 0.00013 4.6E-09 48.8 3.5 23 3-25 31-53 (290)
347 1uf9_A TT1252 protein; P-loop, 97.4 0.00014 4.9E-09 45.5 3.5 24 3-26 8-31 (203)
348 1ixz_A ATP-dependent metallopr 97.4 0.00011 3.8E-09 47.8 3.0 20 6-25 52-71 (254)
349 1g29_1 MALK, maltose transport 97.4 0.00011 3.7E-09 50.9 3.1 22 5-26 31-52 (372)
350 2iyv_A Shikimate kinase, SK; t 97.4 0.00011 3.7E-09 45.5 2.8 21 5-25 4-24 (184)
351 1v43_A Sugar-binding transport 97.4 0.00011 3.8E-09 50.8 3.1 22 5-26 39-60 (372)
352 3r20_A Cytidylate kinase; stru 97.4 0.00012 4.2E-09 47.5 3.1 24 2-25 8-31 (233)
353 1nn5_A Similar to deoxythymidy 97.4 0.00012 4.2E-09 46.2 3.0 23 3-25 9-31 (215)
354 2gza_A Type IV secretion syste 97.3 0.0001 3.5E-09 50.7 2.8 21 5-25 177-197 (361)
355 2pez_A Bifunctional 3'-phospho 97.3 0.00018 6.1E-09 44.4 3.5 24 2-25 4-27 (179)
356 2pt5_A Shikimate kinase, SK; a 97.3 0.00016 5.4E-09 44.0 3.3 21 5-25 2-22 (168)
357 1sxj_E Activator 1 40 kDa subu 97.3 0.0016 5.5E-08 44.2 8.5 20 6-25 39-58 (354)
358 1zd8_A GTP:AMP phosphotransfer 97.3 0.00013 4.4E-09 46.8 3.0 22 4-25 8-29 (227)
359 1rz3_A Hypothetical protein rb 97.3 0.00015 5.2E-09 45.7 3.2 22 4-25 23-44 (201)
360 1rj9_A FTSY, signal recognitio 97.3 0.00013 4.3E-09 49.2 3.0 21 5-25 104-124 (304)
361 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.00012 3.9E-09 49.9 2.7 22 5-26 173-194 (330)
362 1jbk_A CLPB protein; beta barr 97.3 0.00015 5.3E-09 44.5 3.1 21 5-25 45-65 (195)
363 1vht_A Dephospho-COA kinase; s 97.3 0.00019 6.5E-09 45.7 3.5 23 3-25 4-26 (218)
364 1sq5_A Pantothenate kinase; P- 97.3 0.00016 5.4E-09 48.7 3.3 22 4-25 81-102 (308)
365 2ewv_A Twitching motility prot 97.3 0.00015 5E-09 50.2 3.1 21 5-25 138-158 (372)
366 2xb4_A Adenylate kinase; ATP-b 97.3 0.00018 6E-09 46.1 3.3 21 5-25 2-22 (223)
367 3gd7_A Fusion complex of cysti 97.3 0.00013 4.4E-09 50.8 2.8 21 5-25 49-69 (390)
368 3tqc_A Pantothenate kinase; bi 97.3 0.0002 6.8E-09 48.6 3.5 22 4-25 93-114 (321)
369 3b9q_A Chloroplast SRP recepto 97.3 0.00016 5.5E-09 48.6 3.1 21 5-25 102-122 (302)
370 2p5t_B PEZT; postsegregational 97.3 0.00013 4.6E-09 47.6 2.6 23 3-25 32-54 (253)
371 2z0h_A DTMP kinase, thymidylat 97.3 0.00017 5.9E-09 44.9 3.0 21 5-25 2-22 (197)
372 3be4_A Adenylate kinase; malar 97.3 0.00017 5.8E-09 46.0 3.0 23 3-25 5-27 (217)
373 3d31_A Sulfate/molybdate ABC t 97.3 9.1E-05 3.1E-09 50.8 1.8 22 5-26 28-49 (348)
374 1iy2_A ATP-dependent metallopr 97.3 0.00017 5.9E-09 47.6 3.0 20 6-25 76-95 (278)
375 1p9r_A General secretion pathw 97.3 0.00016 5.6E-09 50.7 3.0 21 5-25 169-189 (418)
376 2pbr_A DTMP kinase, thymidylat 97.2 0.00022 7.5E-09 44.2 3.3 21 5-25 2-22 (195)
377 3ake_A Cytidylate kinase; CMP 97.2 0.00023 7.9E-09 44.7 3.4 24 1-25 1-24 (208)
378 1e6c_A Shikimate kinase; phosp 97.2 0.0002 6.8E-09 43.7 3.0 21 5-25 4-24 (173)
379 1in4_A RUVB, holliday junction 97.2 0.00018 6.1E-09 48.9 3.0 21 5-25 53-73 (334)
380 2bwj_A Adenylate kinase 5; pho 97.2 0.00019 6.6E-09 44.7 3.0 22 4-25 13-34 (199)
381 1ukz_A Uridylate kinase; trans 97.2 0.00026 8.8E-09 44.5 3.6 22 4-25 16-37 (203)
382 3kta_A Chromosome segregation 97.2 0.00018 6.3E-09 44.3 2.8 21 5-25 28-48 (182)
383 3e70_C DPA, signal recognition 97.2 0.00019 6.5E-09 48.9 3.0 22 4-25 130-151 (328)
384 1xjc_A MOBB protein homolog; s 97.2 0.00022 7.4E-09 44.1 3.0 21 5-25 6-26 (169)
385 1zak_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 46.0 2.7 22 4-25 6-27 (222)
386 3umf_A Adenylate kinase; rossm 97.2 0.00022 7.5E-09 45.8 3.1 23 3-25 28-51 (217)
387 1lv7_A FTSH; alpha/beta domain 97.2 0.00021 7.3E-09 46.6 3.1 21 5-25 47-67 (257)
388 2oap_1 GSPE-2, type II secreti 97.2 0.00018 6E-09 51.8 2.8 22 5-26 262-283 (511)
389 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00021 7E-09 46.9 3.0 22 4-25 5-26 (260)
390 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00021 7.2E-09 45.5 3.0 21 5-25 25-45 (235)
391 1t9h_A YLOQ, probable GTPase E 97.2 0.00068 2.3E-08 45.7 5.4 50 70-123 82-132 (307)
392 1ak2_A Adenylate kinase isoenz 97.2 0.00025 8.7E-09 45.6 3.3 22 4-25 17-38 (233)
393 2vp4_A Deoxynucleoside kinase; 97.2 0.00021 7.2E-09 46.0 2.9 24 3-26 20-43 (230)
394 2grj_A Dephospho-COA kinase; T 97.2 0.00032 1.1E-08 44.2 3.6 23 3-25 12-34 (192)
395 1qf9_A UMP/CMP kinase, protein 97.2 0.00029 9.9E-09 43.6 3.4 22 4-25 7-28 (194)
396 1gtv_A TMK, thymidylate kinase 97.2 6.4E-05 2.2E-09 47.5 0.3 21 5-25 2-22 (214)
397 1oxx_K GLCV, glucose, ABC tran 97.2 8.9E-05 3.1E-09 51.0 1.0 22 5-26 33-54 (353)
398 3nwj_A ATSK2; P loop, shikimat 97.2 0.00015 5.1E-09 47.6 1.9 23 3-25 48-70 (250)
399 1zuh_A Shikimate kinase; alpha 97.2 0.00031 1.1E-08 42.8 3.2 21 5-25 9-29 (168)
400 2w58_A DNAI, primosome compone 97.2 0.00027 9.1E-09 44.3 3.0 22 4-25 55-76 (202)
401 2h92_A Cytidylate kinase; ross 97.2 0.00022 7.7E-09 45.3 2.6 25 1-25 1-25 (219)
402 4eaq_A DTMP kinase, thymidylat 97.1 0.00041 1.4E-08 44.7 3.7 23 3-25 26-48 (229)
403 3bos_A Putative DNA replicatio 97.1 0.00028 9.6E-09 45.1 3.0 22 4-25 53-74 (242)
404 1nij_A Hypothetical protein YJ 97.1 0.0002 6.7E-09 48.5 2.3 26 1-26 1-27 (318)
405 1ltq_A Polynucleotide kinase; 97.1 0.0004 1.4E-08 46.3 3.8 22 4-25 3-24 (301)
406 2npi_A Protein CLP1; CLP1-PCF1 97.1 0.0002 6.9E-09 50.9 2.3 22 4-25 139-160 (460)
407 2og2_A Putative signal recogni 97.1 0.00029 1E-08 48.5 3.1 21 5-25 159-179 (359)
408 2p65_A Hypothetical protein PF 97.1 0.00024 8.1E-09 43.5 2.4 22 4-25 44-65 (187)
409 1uj2_A Uridine-cytidine kinase 97.1 0.00037 1.3E-08 45.4 3.4 23 3-25 22-44 (252)
410 3exa_A TRNA delta(2)-isopenten 97.1 0.00041 1.4E-08 47.0 3.7 25 1-25 1-25 (322)
411 3n70_A Transport activator; si 97.1 0.00035 1.2E-08 41.7 3.0 23 4-26 25-47 (145)
412 1m7g_A Adenylylsulfate kinase; 97.1 0.00042 1.4E-08 43.9 3.5 22 4-25 26-47 (211)
413 2cvh_A DNA repair and recombin 97.1 0.00032 1.1E-08 44.3 3.0 21 5-25 22-42 (220)
414 2obl_A ESCN; ATPase, hydrolase 97.1 0.00033 1.1E-08 48.1 3.0 22 5-26 73-94 (347)
415 1n0w_A DNA repair protein RAD5 97.1 0.00036 1.2E-08 44.8 3.0 21 5-25 26-46 (243)
416 2yhs_A FTSY, cell division pro 97.1 0.00034 1.2E-08 50.1 3.0 21 5-25 295-315 (503)
417 1yqt_A RNAse L inhibitor; ATP- 97.1 0.00039 1.3E-08 50.3 3.4 22 5-26 49-70 (538)
418 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00043 1.5E-08 41.7 3.1 19 6-24 26-44 (149)
419 1cr0_A DNA primase/helicase; R 97.1 0.00031 1.1E-08 46.8 2.7 21 5-25 37-57 (296)
420 3cnl_A YLQF, putative uncharac 97.1 0.00016 5.3E-09 47.7 1.2 57 58-123 4-61 (262)
421 3b5x_A Lipid A export ATP-bind 97.0 0.00039 1.3E-08 50.7 3.3 21 5-25 371-391 (582)
422 3b60_A Lipid A export ATP-bind 97.0 0.00034 1.2E-08 51.0 2.9 21 5-25 371-391 (582)
423 3b9p_A CG5977-PA, isoform A; A 97.0 0.00039 1.3E-08 46.2 3.0 22 4-25 55-76 (297)
424 2f6r_A COA synthase, bifunctio 97.0 0.00047 1.6E-08 45.8 3.2 23 3-25 75-97 (281)
425 3euj_A Chromosome partition pr 97.0 0.0004 1.4E-08 49.6 3.0 21 5-25 31-51 (483)
426 3h4m_A Proteasome-activating n 97.0 0.00041 1.4E-08 45.8 2.9 21 5-25 53-73 (285)
427 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00044 1.5E-08 44.9 3.0 21 5-25 41-61 (262)
428 2dpy_A FLII, flagellum-specifi 97.0 0.0004 1.4E-08 49.1 3.0 22 5-26 159-180 (438)
429 4ido_A Atlastin-1; GTPase, GTP 97.0 0.0014 4.8E-08 46.5 5.6 20 5-24 69-88 (457)
430 3gmt_A Adenylate kinase; ssgci 97.0 0.00053 1.8E-08 44.4 3.2 23 3-25 8-30 (230)
431 1njg_A DNA polymerase III subu 97.0 0.00047 1.6E-08 43.8 3.0 21 5-25 47-67 (250)
432 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.00045 1.5E-08 47.6 3.1 19 6-24 26-44 (365)
433 2chg_A Replication factor C sm 97.0 0.00048 1.6E-08 43.2 3.0 20 6-25 41-60 (226)
434 3cf0_A Transitional endoplasmi 97.0 0.00045 1.5E-08 46.2 2.9 21 5-25 51-71 (301)
435 3qf4_B Uncharacterized ABC tra 97.0 0.00038 1.3E-08 51.0 2.7 21 5-25 383-403 (598)
436 2yl4_A ATP-binding cassette SU 97.0 0.00036 1.2E-08 51.0 2.6 21 5-25 372-392 (595)
437 3ozx_A RNAse L inhibitor; ATP 97.0 0.00044 1.5E-08 50.1 3.0 22 5-26 27-48 (538)
438 2qmh_A HPR kinase/phosphorylas 97.0 0.00058 2E-08 43.3 3.2 23 4-26 35-57 (205)
439 1svm_A Large T antigen; AAA+ f 97.0 0.00047 1.6E-08 47.8 3.0 21 5-25 171-191 (377)
440 3t15_A Ribulose bisphosphate c 97.0 0.00044 1.5E-08 46.2 2.8 21 5-25 38-58 (293)
441 4edh_A DTMP kinase, thymidylat 97.0 0.00067 2.3E-08 43.3 3.5 25 1-25 4-28 (213)
442 1l8q_A Chromosomal replication 96.9 0.00049 1.7E-08 46.4 2.9 21 5-25 39-59 (324)
443 3j16_B RLI1P; ribosome recycli 96.9 0.00051 1.7E-08 50.5 3.1 22 5-26 105-126 (608)
444 1q3t_A Cytidylate kinase; nucl 96.9 0.00066 2.3E-08 43.8 3.4 23 3-25 16-38 (236)
445 4a82_A Cystic fibrosis transme 96.9 0.00032 1.1E-08 51.2 1.8 21 5-25 369-389 (578)
446 1tue_A Replication protein E1; 96.9 0.00051 1.7E-08 43.8 2.4 21 5-25 60-80 (212)
447 3zvl_A Bifunctional polynucleo 96.9 0.00061 2.1E-08 47.8 3.1 21 5-25 260-280 (416)
448 3qf4_A ABC transporter, ATP-bi 96.9 0.00042 1.5E-08 50.6 2.3 21 5-25 371-391 (587)
449 3bk7_A ABC transporter ATP-bin 96.9 0.00067 2.3E-08 49.8 3.2 22 5-26 119-140 (607)
450 3crm_A TRNA delta(2)-isopenten 96.9 0.00075 2.6E-08 45.8 3.2 21 5-25 7-27 (323)
451 3d3q_A TRNA delta(2)-isopenten 96.9 0.00095 3.3E-08 45.6 3.7 22 4-25 8-29 (340)
452 1d2n_A N-ethylmaleimide-sensit 96.9 0.00096 3.3E-08 43.8 3.6 22 4-25 65-86 (272)
453 3ozx_A RNAse L inhibitor; ATP 96.9 0.00063 2.2E-08 49.3 3.0 22 5-26 296-317 (538)
454 1ofh_A ATP-dependent HSL prote 96.8 0.00077 2.6E-08 44.8 3.0 21 5-25 52-72 (310)
455 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00084 2.9E-08 48.6 3.4 22 5-26 314-335 (538)
456 3syl_A Protein CBBX; photosynt 96.8 0.00077 2.6E-08 44.9 3.0 21 5-25 69-89 (309)
457 4b4t_K 26S protease regulatory 96.8 0.0008 2.7E-08 47.4 3.1 21 5-25 208-228 (428)
458 1nlf_A Regulatory protein REPA 96.8 0.0007 2.4E-08 44.7 2.7 21 5-25 32-52 (279)
459 4fcw_A Chaperone protein CLPB; 96.8 0.00079 2.7E-08 44.9 3.0 21 5-25 49-69 (311)
460 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.00082 2.8E-08 45.5 3.0 22 5-26 47-68 (322)
461 2qby_A CDC6 homolog 1, cell di 96.8 0.00073 2.5E-08 46.1 2.7 21 5-25 47-67 (386)
462 1a7j_A Phosphoribulokinase; tr 96.8 0.00043 1.5E-08 46.3 1.5 23 3-25 5-27 (290)
463 4b4t_M 26S protease regulatory 96.8 0.00084 2.9E-08 47.4 3.0 21 5-25 217-237 (434)
464 2dr3_A UPF0273 protein PH0284; 96.8 0.00083 2.8E-08 43.2 2.8 21 5-25 25-45 (247)
465 3bk7_A ABC transporter ATP-bin 96.8 0.00095 3.3E-08 49.0 3.4 22 5-26 384-405 (607)
466 4f4c_A Multidrug resistance pr 96.7 0.00052 1.8E-08 54.5 2.0 21 5-25 1107-1127(1321)
467 3eie_A Vacuolar protein sortin 96.7 0.00091 3.1E-08 45.1 3.0 22 4-25 52-73 (322)
468 4b4t_L 26S protease subunit RP 96.7 0.00093 3.2E-08 47.2 3.0 21 5-25 217-237 (437)
469 1sxj_C Activator 1 40 kDa subu 96.7 0.00091 3.1E-08 45.4 2.9 21 6-26 49-69 (340)
470 1fnn_A CDC6P, cell division co 96.7 0.00096 3.3E-08 45.7 3.0 21 5-25 46-66 (389)
471 1c9k_A COBU, adenosylcobinamid 96.7 0.001 3.4E-08 41.5 2.8 21 6-26 2-22 (180)
472 3lv8_A DTMP kinase, thymidylat 96.7 0.001 3.5E-08 43.2 3.0 25 1-25 25-49 (236)
473 3a8t_A Adenylate isopentenyltr 96.7 0.0014 4.8E-08 44.8 3.7 21 5-25 42-62 (339)
474 3j16_B RLI1P; ribosome recycli 96.7 0.00099 3.4E-08 48.9 3.1 21 6-26 381-401 (608)
475 3v9p_A DTMP kinase, thymidylat 96.7 0.00097 3.3E-08 43.1 2.8 24 2-25 24-47 (227)
476 2px0_A Flagellar biosynthesis 96.7 0.00089 3E-08 44.9 2.7 21 5-25 107-127 (296)
477 4tmk_A Protein (thymidylate ki 96.7 0.0011 3.8E-08 42.3 3.0 25 1-25 1-25 (213)
478 3qks_A DNA double-strand break 96.7 0.0012 4.2E-08 41.7 3.1 19 6-24 26-44 (203)
479 2qgz_A Helicase loader, putati 96.7 0.0012 4.2E-08 44.4 3.2 22 4-25 153-174 (308)
480 3tqf_A HPR(Ser) kinase; transf 96.7 0.0012 4.1E-08 41.0 2.8 22 5-26 18-39 (181)
481 2r62_A Cell division protease 96.7 0.00042 1.5E-08 45.3 0.9 20 6-25 47-66 (268)
482 4b4t_J 26S protease regulatory 96.7 0.0011 3.8E-08 46.3 3.0 21 5-25 184-204 (405)
483 2bjv_A PSP operon transcriptio 96.7 0.0012 4.2E-08 43.1 3.1 23 4-26 30-52 (265)
484 1vma_A Cell division protein F 96.6 0.0012 4.2E-08 44.5 3.0 21 5-25 106-126 (306)
485 3foz_A TRNA delta(2)-isopenten 96.6 0.0013 4.5E-08 44.4 3.1 21 5-25 12-32 (316)
486 1sxj_D Activator 1 41 kDa subu 96.6 0.0012 4.1E-08 44.7 3.0 20 6-25 61-80 (353)
487 3m6a_A ATP-dependent protease 96.6 0.0011 3.9E-08 48.0 2.9 21 5-25 110-130 (543)
488 3hws_A ATP-dependent CLP prote 96.6 0.0012 4.2E-08 45.2 3.0 22 4-25 52-73 (363)
489 2z4s_A Chromosomal replication 96.6 0.0012 3.9E-08 46.7 2.9 21 5-25 132-152 (440)
490 2v1u_A Cell division control p 96.6 0.001 3.4E-08 45.4 2.5 21 5-25 46-66 (387)
491 3pfi_A Holliday junction ATP-d 96.6 0.0013 4.3E-08 44.5 3.0 22 5-26 57-78 (338)
492 3cr8_A Sulfate adenylyltranfer 96.6 0.00072 2.5E-08 49.1 1.8 23 3-25 369-391 (552)
493 1p5z_B DCK, deoxycytidine kina 96.6 0.00096 3.3E-08 43.7 2.3 23 3-25 24-46 (263)
494 1pzn_A RAD51, DNA repair and r 96.6 0.0011 3.8E-08 45.4 2.7 22 5-26 133-154 (349)
495 2qp9_X Vacuolar protein sortin 96.6 0.0013 4.4E-08 45.1 3.0 21 5-25 86-106 (355)
496 3uk6_A RUVB-like 2; hexameric 96.6 0.0011 3.8E-08 45.2 2.7 21 5-25 72-92 (368)
497 2ocp_A DGK, deoxyguanosine kin 96.6 0.0016 5.5E-08 42.0 3.3 23 3-25 2-24 (241)
498 1um8_A ATP-dependent CLP prote 96.6 0.0014 4.6E-08 45.2 3.0 22 4-25 73-94 (376)
499 2iw3_A Elongation factor 3A; a 96.6 0.0016 5.5E-08 50.2 3.6 23 5-27 463-485 (986)
500 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0013 4.5E-08 47.2 2.9 22 5-26 66-87 (499)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.5e-33 Score=182.30 Aligned_cols=126 Identities=33% Similarity=0.580 Sum_probs=107.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
|+++||+++|.+|||||||++++..+.+...+.+|.. +.....+..++..+.+.+|||+|++.|...++.+++++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 5689999999999999999999999999888888875 677778888999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCceec
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v~ 127 (128)
+|||+++++||+++..|+..+.. ...+++|+++|+||+|+.++|+|+
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~-~~~~~~piilVgNK~Dl~~~r~V~ 137 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRT-ERGSDVIIMLVGNKTDLADKRQVS 137 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHH-HHTTSSEEEEEEECTTCGGGCCSC
T ss_pred EEeecchhHHHHHHHHHHHHHHH-hcCCCCeEEEEeeccchHhcCccc
Confidence 99999999999999999999887 345689999999999999888775
No 2
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=4.5e-31 Score=163.42 Aligned_cols=126 Identities=94% Similarity=1.373 Sum_probs=112.7
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999999998877777777766666677778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 126 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 126 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccC
Confidence 9999999999999999988888666778999999999999876554
No 3
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=9.9e-31 Score=161.61 Aligned_cols=126 Identities=71% Similarity=1.138 Sum_probs=113.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+++||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 78999999999999999999999998877777777666667778888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 126 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREV 126 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCS
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccC
Confidence 9999999999999999998888666678999999999999776554
No 4
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=2e-30 Score=160.42 Aligned_cols=126 Identities=54% Similarity=0.935 Sum_probs=110.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 67899999999999999999999998877777777766666777888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++++++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 127 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCcc
Confidence 9999999999999999999888766678999999999999876544
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=4e-30 Score=161.61 Aligned_cols=125 Identities=56% Similarity=0.964 Sum_probs=113.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+...+.++...........++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 96 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 57899999999999999999999988877777777766677788889988899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v 141 (183)
T 3kkq_A 97 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKV 141 (183)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCc
Confidence 999999999999999999888777789999999999999876655
No 6
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=5.1e-30 Score=160.87 Aligned_cols=125 Identities=42% Similarity=0.758 Sum_probs=109.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 45899999999999999999999888877777887777677888889888999999999999998899999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 129 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhccee
Confidence 999999999999999998888666778999999999999876655
No 7
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1e-29 Score=159.81 Aligned_cols=126 Identities=54% Similarity=0.935 Sum_probs=112.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 46799999999999999999999998877777777776667777888888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 141 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 141 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc
Confidence 9999999999999999999888777678999999999999775544
No 8
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=157.22 Aligned_cols=126 Identities=35% Similarity=0.583 Sum_probs=96.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc--hhHhHHhhccCCcEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--FTAMRDLYMKNGQGF 78 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 78 (128)
++.+||+++|++|||||||++++.+..+...+.....+.....+.+++..+.+.+||+||++. +......+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 467999999999999999999999877655444444455667778888888899999999887 667778889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.+++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v 129 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREV 129 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccccc
Confidence 999999999999999999888877544568999999999999876655
No 9
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.1e-29 Score=159.02 Aligned_cols=125 Identities=60% Similarity=0.976 Sum_probs=111.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 56899999999999999999999988777777777766667778888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v 132 (181)
T 2fn4_A 88 FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQV 132 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc
Confidence 999999999999999998877666778999999999999876554
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=160.65 Aligned_cols=126 Identities=54% Similarity=0.935 Sum_probs=112.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++.+||+++|++|||||||++++.++.+...+.++........+.+++..+.+.+||+||++.+...+..+++.++++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 45789999999999999999999998877777777776667778888888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 137 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 137 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccc
Confidence 9999999999999999998888666678999999999999876554
No 11
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-29 Score=154.60 Aligned_cols=122 Identities=32% Similarity=0.560 Sum_probs=106.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
|+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 6789999999999999999999999877666555554 444566777888889999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGS
T ss_pred EEEecCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccc
Confidence 999999999999999998888773 4568999999999999765
No 12
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=4.1e-29 Score=157.97 Aligned_cols=126 Identities=36% Similarity=0.645 Sum_probs=108.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchh-HhHHhhccCCcEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFT-AMRDLYMKNGQGF 78 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~ 78 (128)
++.+||+++|.+|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+. ..+..+++++|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 3568999999999999999999998877666555543 4556677778888889999999999998 8888899999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 145 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQV 145 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccee
Confidence 999999999999999999998888666778999999999999776554
No 13
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=6e-29 Score=153.32 Aligned_cols=122 Identities=63% Similarity=1.081 Sum_probs=109.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 78899999999999999999999998777666677666667777888888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|||+++..+++.+..|+..+.......+.|+++|+||+|+.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 999999999999999999888866667899999999999976
No 14
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=6.2e-29 Score=156.58 Aligned_cols=121 Identities=63% Similarity=1.107 Sum_probs=108.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++||+++|++|||||||++++.++.+...+.++..+.....+..++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 57899999999999999999999988877777777777777888889998999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++.+..|+..+.......+.|+++|+||+|+.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 99999999999999999998877778999999999999975
No 15
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=9.6e-30 Score=162.39 Aligned_cols=125 Identities=39% Similarity=0.676 Sum_probs=104.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..++++++++++|
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence 57899999999999999999999988877777777666666666677788899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 147 (201)
T 3oes_A 103 YSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147 (201)
T ss_dssp EETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCS
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccccc
Confidence 999999999999999999888666678999999999999876654
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=158.77 Aligned_cols=124 Identities=34% Similarity=0.603 Sum_probs=104.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+... ..+++.++++++|
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv 98 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVV 98 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEE
Confidence 568999999999999999999999888777777777666677778888899999999999988775 5688999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+++++
T Consensus 99 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v 145 (187)
T 3c5c_A 99 YSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV 145 (187)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS
T ss_pred EECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc
Confidence 999999999999999888877432 368999999999999776554
No 17
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-29 Score=158.30 Aligned_cols=124 Identities=44% Similarity=0.761 Sum_probs=109.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++....+...+.+++..+.+.+||+||++. ...+..+++.++++++|
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv 105 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLV 105 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEE
Confidence 46899999999999999999999988877777777666666778888889999999999988 77788899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++++.+..|+..+.......++|+++|+||+|+.+.+++
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV 150 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccccc
Confidence 999999999999999998888666778999999999999876554
No 18
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.3e-28 Score=155.61 Aligned_cols=122 Identities=65% Similarity=1.120 Sum_probs=99.3
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|.+|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 67899999999999999999999998777766677666667778888888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|||+++..+++.+..|+..+.......+.|+++|+||+|+.+
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999999999998888766667899999999999976
No 19
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=9.3e-29 Score=153.23 Aligned_cols=124 Identities=34% Similarity=0.596 Sum_probs=106.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+.+..+.+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 578999999999999999999998777665555543 3445566778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ...++.|+++|+||+|+.+++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~nK~Dl~~~~~~ 129 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAV 129 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccCcccccc
Confidence 9999999999999999888877 34568999999999999765543
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=7e-29 Score=156.68 Aligned_cols=115 Identities=26% Similarity=0.510 Sum_probs=100.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+++||+++|++|||||||++++.++.+...+.++ ...+...+.+++..+.+.+||++|++.+. ++++++++++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 57899999999999999999999998887766666 44455788889999999999999999887 6778999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|||++++.+|+.+..|+..+.......+.|+++|+||+|+.
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 99999999999999999988775444789999999999994
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=4.9e-29 Score=154.27 Aligned_cols=124 Identities=35% Similarity=0.546 Sum_probs=86.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.+...... .++........+..++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 358999999999999999999987654322 3344445566777889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++++++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 124 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 124 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccc
Confidence 999999999999999999888656678999999999999876654
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=2.6e-28 Score=152.88 Aligned_cols=124 Identities=31% Similarity=0.550 Sum_probs=106.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|+|||||++++.++.+...+.++.. +.....+.+.+..+.+.+||+||++.+...+..+++++|++++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 468999999999999999999999877665545443 4555667778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ...++.|+++|+||+|+.+.+++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~i~v~nK~Dl~~~~~~ 135 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQA-QGNPNMVMALAGNKSDLLDARKV 135 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECCcccccccC
Confidence 9999999999999999988877 34568999999999999876554
No 23
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=5.6e-29 Score=155.48 Aligned_cols=125 Identities=33% Similarity=0.576 Sum_probs=108.0
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
|+++||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++++++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 5679999999999999999999998777666555554 566677778888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+++++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~ 137 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQV 137 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcC
Confidence 999999999999999998888763 3467999999999999876554
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=1.7e-28 Score=152.14 Aligned_cols=124 Identities=35% Similarity=0.593 Sum_probs=106.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+.+.+.++.. +.....+.+.+....+.+||+||++.+......+++++|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 578999999999999999999999877666555554 3445667778888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ...+..|+++|+||+|+.+++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~~iilv~nK~Dl~~~~~v 129 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREV 129 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCS
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECCcccccccc
Confidence 9999999999999888888877 45678999999999999876554
No 25
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-28 Score=152.99 Aligned_cols=125 Identities=46% Similarity=0.876 Sum_probs=106.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+...+.++...........++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999987766666666655566667788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+..... .++.|+++|+||+|+.+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v 127 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREV 127 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccccc
Confidence 999999999999999888777432 368999999999999776554
No 26
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1.6e-28 Score=153.71 Aligned_cols=115 Identities=26% Similarity=0.488 Sum_probs=98.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++.+||+++|++|||||||++++.++.+.. +.++..+.+...+.+++..+.+.+||+||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999987765 56676666677788888889999999999887 456788999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLE 121 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~ 121 (128)
|||++++++++.+..|+..+..... .+++|+++|+||+|+.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 9999999999999998766665433 3689999999999994
No 27
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=157.05 Aligned_cols=123 Identities=40% Similarity=0.649 Sum_probs=106.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 48999999999999999999999877666555553 55566777888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl~~~~~v 149 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQ-YASNKVITVLVGNKIDLAERREV 149 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCSS
T ss_pred EECCCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCcccccc
Confidence 999999999999999888876 34567999999999999865554
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=157.27 Aligned_cols=123 Identities=35% Similarity=0.601 Sum_probs=101.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|.+|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999877666555543 45566777788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.+++++
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v 152 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREV 152 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCcccccccc
Confidence 9999999999999998888773 3578999999999999876554
No 29
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=6e-29 Score=160.33 Aligned_cols=120 Identities=26% Similarity=0.484 Sum_probs=104.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
++.+||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||++|++.+...+..++++++++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 35789999999999999999999998888877788776667777778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHH-HHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|||++++++++. +..|+..+... .++.|+++|+||+|+.+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGG
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcc
Confidence 999999999998 67787777763 46899999999999976
No 30
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=2.2e-28 Score=153.88 Aligned_cols=123 Identities=34% Similarity=0.578 Sum_probs=106.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999877666555544 45566677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~ 133 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARM-LASQNIVIILCGNKKDLDADREV 133 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccccccccc
Confidence 999999999999999888776 34568999999999999765544
No 31
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=1.6e-28 Score=155.77 Aligned_cols=120 Identities=28% Similarity=0.568 Sum_probs=105.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 101 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC 101 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence 46899999999999999999999988877777887777777788889999999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++.+++.+ ..|...+.. ...+.|+++|+||+|+.++
T Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 102 FAVNNRTSFDNISTKWEPEIKH--YIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHH--HCTTSEEEEEEECGGGCCT
T ss_pred EECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhhccC
Confidence 999999999997 555555554 3568999999999999753
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=154.18 Aligned_cols=123 Identities=38% Similarity=0.708 Sum_probs=107.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 47999999999999999999999877666555553 55567778888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+.+
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~~ 139 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVV 139 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECccccccccc
Confidence 999999999999999888877 34568999999999999876654
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=3.3e-28 Score=151.95 Aligned_cols=123 Identities=37% Similarity=0.584 Sum_probs=106.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|.+|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 58999999999999999999999877666555544 44556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~ 138 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDV 138 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCS
T ss_pred EeCcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccccccccc
Confidence 999999999999999888877 34568999999999999765544
No 34
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=9.2e-29 Score=155.45 Aligned_cols=121 Identities=30% Similarity=0.563 Sum_probs=106.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|+.+||+++|++|||||||++++.++.+...+.++..+.....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 67899999999999999999999998877777777777667777888999999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEccccccc
Confidence 99999999999987 566666653 348999999999999764
No 35
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=1.7e-28 Score=154.55 Aligned_cols=119 Identities=29% Similarity=0.523 Sum_probs=104.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
..+||+++|++|||||||++++.++.+...+.++........+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence 46899999999999999999999988877777777666666777788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++.+ ..|...+... .++.|+++|+||+|+.+
T Consensus 86 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 86 FDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhc
Confidence 999999999998 5676666553 36899999999999975
No 36
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=1.1e-28 Score=153.16 Aligned_cols=124 Identities=34% Similarity=0.631 Sum_probs=98.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999877666555554 4445667778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+++++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~ 129 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHV 129 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCS
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccccccccc
Confidence 99999999999999888887663 3357999999999999876554
No 37
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=2e-28 Score=151.60 Aligned_cols=123 Identities=36% Similarity=0.652 Sum_probs=106.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+......+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 368999999999999999999999877666555543 5556777778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCI 127 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCccccc
Confidence 999999999999999988887744 68999999999999775543
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=9.2e-28 Score=153.18 Aligned_cols=123 Identities=35% Similarity=0.647 Sum_probs=105.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 48999999999999999999999877666555553 44456667788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+.+
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~ 131 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVV 131 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHH-HSCSSCEEEEEEECTTCTTSCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccCccccc
Confidence 999999999999998888776 34568999999999999876554
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=155.31 Aligned_cols=124 Identities=37% Similarity=0.644 Sum_probs=101.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+||+++|.+|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iil 104 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 104 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 358999999999999999999998777665555553 5556677778888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+++
T Consensus 105 V~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v 149 (192)
T 2il1_A 105 VYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREI 149 (192)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCS
T ss_pred EEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccccccccc
Confidence 9999999999999888877766 44568999999999999876554
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=1.7e-28 Score=152.23 Aligned_cols=124 Identities=27% Similarity=0.487 Sum_probs=94.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCC-CChhceeEEEEEECCcEEEEEEEeCCCccchhH-hHHhhccCCcEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFIL 80 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 80 (128)
.+||+++|++|||||||++++.+........ ....+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 4799999999999999999998755443322 233566677778889899999999999998876 66777899999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++++++.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 127 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 127 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccC
Confidence 9999999999999999999888655568999999999999866554
No 41
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=155.00 Aligned_cols=125 Identities=28% Similarity=0.478 Sum_probs=102.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH-hHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-MRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 79 (128)
..+||+++|++|||||||++++.+..... ....+..+.....+.+++..+.+.+||++|++.+.. .+..+++++++++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 35899999999999999999997533222 222334456667778889899999999999987764 7778899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+++++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 148 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREV 148 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCc
Confidence 99999999999999999988877544468999999999999876655
No 42
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=2.1e-28 Score=154.96 Aligned_cols=124 Identities=38% Similarity=0.605 Sum_probs=103.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999877665555433 4555677778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~v 144 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQ-HSSSNMVIMLIGNKSDLESRRDV 144 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCS
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccCCcccc
Confidence 9999999999999999888876 34568999999999999765554
No 43
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4e-28 Score=153.90 Aligned_cols=124 Identities=35% Similarity=0.602 Sum_probs=105.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+.+..+.+.+||+||++.+...+..++++++++++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 468999999999999999999999877655555554 3444556677788889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~-~~~~~~piiiv~NK~Dl~~~~~v 146 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKE-HGPENIVMAIAGNKCDLSDIREV 146 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCS
T ss_pred EEeCCCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECccccccccc
Confidence 9999999999999999888877 34568999999999999765543
No 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=6.1e-29 Score=156.21 Aligned_cols=123 Identities=33% Similarity=0.659 Sum_probs=80.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 48999999999999999999998776555444443 34455677788888999999999999999989999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~v 131 (183)
T 2fu5_C 88 YDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQV 131 (183)
T ss_dssp EETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECccCCccCcC
Confidence 999999999999998888876 34568999999999999876654
No 45
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=5e-28 Score=154.78 Aligned_cols=123 Identities=41% Similarity=0.695 Sum_probs=106.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 48999999999999999999999877666555544 45556777888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~ 131 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDR-YATSTVLKLLVGNKCDLKDKRVV 131 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCcccccc
Confidence 999999999999999888876 34568999999999999876554
No 46
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.6e-27 Score=148.87 Aligned_cols=121 Identities=33% Similarity=0.639 Sum_probs=102.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++++++++++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 358999999999999999999998777665555554 4556677788888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhC---CCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~ 122 (128)
|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 9999999999999999888876443 26789999999999973
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=9.3e-28 Score=151.63 Aligned_cols=124 Identities=29% Similarity=0.530 Sum_probs=104.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhc-ee-EEEEEECCc---------EEEEEEEeCCCccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SY-RKQVEVDGQ---------QCMLEILDTAGTEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~~~~ 71 (128)
.+||+++|++|||||||++++.++.+...+.++... .. ...+...+. .+.+.+||+||++.+...+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 489999999999999999999997776665555543 22 344555554 6789999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~ 145 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV 145 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccc
Confidence 9999999999999999999999999988887555578999999999999875544
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=152.38 Aligned_cols=122 Identities=37% Similarity=0.630 Sum_probs=103.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence 48999999999999999999998776655555543 55567777888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+... .++.|+++|+||+|+.+.+.+
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~ 131 (181)
T 3tw8_B 89 YDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVV 131 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCS
T ss_pred EECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhccc
Confidence 9999999999999988888663 458999999999999876544
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-28 Score=153.13 Aligned_cols=121 Identities=37% Similarity=0.598 Sum_probs=105.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 568999999999999999999999877666666553 4455667778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.+
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 999999999999999988887755557899999999999954
No 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-27 Score=149.74 Aligned_cols=124 Identities=33% Similarity=0.655 Sum_probs=97.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+.+||+++|++|||||||++++.++.+.. .+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 88 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 88 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEE
Confidence 46899999999999999999999877643 3444443 444455677888888999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+++++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~ 134 (180)
T 2g6b_A 89 LLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVV 134 (180)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECCSTTSCCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccCccccc
Confidence 999999999999999988888773 3478999999999999876554
No 51
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.4e-28 Score=154.64 Aligned_cols=125 Identities=35% Similarity=0.585 Sum_probs=101.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc-hhHhHHhhccCCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGF 78 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~ 78 (128)
..+||+++|.+|||||||++++.+. .+...+.++..+.....+.+++..+.+.+||++|.+. +......+++.++++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 3589999999999999999999963 3344444455566677788889988999999999876 566677788999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+++
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v 163 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV 163 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE
Confidence 999999999999999998887766434468999999999999876655
No 52
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=1.4e-28 Score=157.43 Aligned_cols=121 Identities=31% Similarity=0.601 Sum_probs=104.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++..+.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 108 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 108 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999988877777777777777788888998999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||++++.+++.+. .|+..+... ..+.|+++|+||+|+.+.+
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 109 FSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCH
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccch
Confidence 9999999999997 666666653 3789999999999997654
No 53
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=8.2e-28 Score=151.97 Aligned_cols=123 Identities=34% Similarity=0.628 Sum_probs=105.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 48999999999999999999999877666555543 34445666778888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~ 145 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKT-YSWDNAQVILVGNKCDLEDERVV 145 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCS
T ss_pred EECCCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccccccCC
Confidence 999999999999998888776 34568999999999999876544
No 54
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.3e-28 Score=158.10 Aligned_cols=122 Identities=31% Similarity=0.597 Sum_probs=104.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|+|||||++++.++.+...+.++..+.+...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 46899999999999999999999988877777777776677777888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
||++++.+++.+. .|+..+... .++.|+++|+||+|+.+++.
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCcc
Confidence 9999999999987 677766653 35899999999999976543
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7e-28 Score=152.77 Aligned_cols=119 Identities=31% Similarity=0.615 Sum_probs=104.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.+||+++|++|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 58999999999999999999999888777777777666677777888889999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 83 SITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+.
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 999999999987 677766653 358999999999999764
No 56
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=2.4e-28 Score=152.68 Aligned_cols=126 Identities=39% Similarity=0.630 Sum_probs=104.0
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEECC-cEEEEEEEeCCCccchhHhHHhhccCCcEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDG-QQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 78 (128)
++.+||+++|++|||||||++++.++.+...+.++. .+.....+.+.+ ..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 367999999999999999999999877765555555 356667777766 567899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCc-EEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKD-TDDVP-MVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~~~~v 126 (128)
++|||++++.+++.+..|+..+..... ..+.| +++|+||+|+.+++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~ 133 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI 133 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc
Confidence 999999999999999988887766422 12445 8999999999875544
No 57
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=5.4e-28 Score=155.05 Aligned_cols=119 Identities=29% Similarity=0.523 Sum_probs=103.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
..+||+++|++|||||||++++.++.+...+.++........+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 106 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 106 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence 35899999999999999999999988877777777666566677788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++++ ..|...+... .++.|+++|+||+|+.+
T Consensus 107 ~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 107 FDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhcc
Confidence 999999999998 6777766653 36899999999999975
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=8.8e-28 Score=152.19 Aligned_cols=123 Identities=28% Similarity=0.505 Sum_probs=105.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+.+..+.+.+||+||++.+...+..++++++++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 58999999999999999999999877666555543 44456667788888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+++
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~~ 148 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYD-HAEATIVVMLVGNKSDLSQAREV 148 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHT-TSCTTCEEEEEEECGGGGGGCCS
T ss_pred EECCCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECCCccccccc
Confidence 999999999999998888776 34568999999999999775543
No 59
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=156.28 Aligned_cols=121 Identities=31% Similarity=0.662 Sum_probs=86.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..++++++++++|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 46899999999999999999999987777777777666677778888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||++++.+++.+. .|+..+... .+++|+++|+||+|+.+++
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCH
T ss_pred EECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccc
Confidence 9999999999987 566666553 4679999999999997753
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=5.6e-28 Score=153.97 Aligned_cols=119 Identities=34% Similarity=0.603 Sum_probs=98.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+...+.++..+.+...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 98 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLC 98 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEE
Confidence 46899999999999999999999987777777777777677788888888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++.+. .|+..+... .++.|+++|+||+|+.+
T Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 99 FSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGG
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhh
Confidence 9999999999997 677766653 35899999999999976
No 61
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=7.3e-28 Score=149.30 Aligned_cols=120 Identities=38% Similarity=0.646 Sum_probs=99.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+||+++|++|+|||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 368999999999999999999999877665555544 4555667777888889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+|++++.+++.+..|+..+.. ....+.|+++|+||+|+.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECccCCc
Confidence 9999999999999999888877 3446899999999999943
No 62
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=155.28 Aligned_cols=123 Identities=36% Similarity=0.581 Sum_probs=98.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998777665555543 45566677788888899999999999998899999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++.+
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~v 148 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDART-LASPNIVVILCGNKKDLDPEREV 148 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HTCTTCEEEEEEECGGGGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECCCccccccc
Confidence 999999999999999888876 34478999999999999765554
No 63
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.6e-28 Score=155.50 Aligned_cols=123 Identities=36% Similarity=0.652 Sum_probs=105.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+...+..+.+.+||+||++.+...+..++++++++++|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 102 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence 48999999999999999999998776665545443 45556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++.+
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~ 146 (191)
T 3dz8_A 103 YDITNEESFNAVQDWATQIKT-YSWDNAQVILVGNKCDMEEERVV 146 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCcccccc
Confidence 999999999999998888877 44578999999999999776554
No 64
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=2.8e-28 Score=155.73 Aligned_cols=125 Identities=27% Similarity=0.368 Sum_probs=77.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChh-ceeEEEEEECCc--EEEEEEEeCCCccchhHhHHhhccCCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIE-DSYRKQVEVDGQ--QCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (128)
+.+||+++|++|||||||++++.++ .+...+.++.. +.....+.+.+. .+.+.+||+||++.+...+..+++++|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 3589999999999999999999987 66666666654 556667777776 788999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhC--CCCCcEEEEEecCCCCC-Ccee
Q psy784 77 GFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE-ERVV 126 (128)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~v 126 (128)
++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+ ++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v 151 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV 151 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC
Confidence 99999999999999999999988877443 26899999999999987 5554
No 65
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.6e-27 Score=152.15 Aligned_cols=120 Identities=32% Similarity=0.610 Sum_probs=103.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.++||+++|.+|||||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 35899999999999999999999988777777776655556677888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++.+++.+ ..|...+... .++.|+++|+||+|+.+.
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence 999999999998 5566655552 358999999999999765
No 66
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.5e-28 Score=155.91 Aligned_cols=123 Identities=32% Similarity=0.569 Sum_probs=100.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 48999999999999999999999877665555543 45556677788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+.+++
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~v 136 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRE-NADDNVAVGLIGNKSDLAHLRAV 136 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHH-HCC--CEEEEEECCGGGGGGCCS
T ss_pred EeCCCHHHHHHHHHHHHHHHH-hCCCCCeEEEEEECccccccccc
Confidence 999999999999999888876 34568999999999999876554
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=152.06 Aligned_cols=119 Identities=33% Similarity=0.637 Sum_probs=96.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.++.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 358999999999999999999999877655555543 4555677788888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
|||++++.+++.+..|+..+.. ....+.|+++|+||+|+.
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIED-AAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHH-HC---CCEEEEEECGGGH
T ss_pred EEECCChHHHHHHHHHHHHHHH-hcCCCCCEEEEEECcccc
Confidence 9999999999999988887766 344679999999999996
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-27 Score=153.38 Aligned_cols=121 Identities=31% Similarity=0.576 Sum_probs=99.0
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
|.++||+++|.+|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45689999999999999999999998877666677666656667778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHH-HHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|||++++.+++.+ ..|...+.. ..++.|+++|+||+|+.+.
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGC
T ss_pred EEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhcc
Confidence 9999999999998 556665555 2368999999999999765
No 69
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.4e-27 Score=150.58 Aligned_cols=121 Identities=45% Similarity=0.896 Sum_probs=105.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.++|+++|++|||||||++++.++.+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence 35899999999999999999999987766666666655566667788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 122 (128)
||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 999999999999988887776443 35789999999999975
No 70
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=2.6e-27 Score=149.21 Aligned_cols=119 Identities=23% Similarity=0.362 Sum_probs=99.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++. ...+.++.. .....+.+++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999876 445555544 3344555554 4599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|++++.+++++..|+..+.......+.|+++|+||+|+.+++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 9999999999999998888774445789999999999997653
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=7.4e-29 Score=155.52 Aligned_cols=122 Identities=32% Similarity=0.602 Sum_probs=90.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|+|||||++++.++.+...+.++....+...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 86 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEE
Confidence 46899999999999999999999987776666666544444455567777889999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
||++++.+++.+. .|...+... .++.|+++|+||+|+.+++.
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 87 FSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcc
Confidence 9999999999997 576666653 35899999999999976543
No 72
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=5.6e-28 Score=155.67 Aligned_cols=124 Identities=30% Similarity=0.564 Sum_probs=101.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCc----------EEEEEEEeCCCccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQ----------QCMLEILDTAGTEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~~~ 71 (128)
.+||+++|++|||||||++++.++.+...+.++.. +.....+.+.+. .+.+.+||+||++.+...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 58999999999999999999998777555444433 333445555555 6789999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++.+|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+++++
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 159 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREV 159 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccccc
Confidence 9999999999999999999999888877665333378999999999999876554
No 73
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=4.9e-27 Score=145.00 Aligned_cols=116 Identities=22% Similarity=0.375 Sum_probs=96.0
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEe
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYS 83 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (128)
+||+++|++|||||||++++.++.+.. +.+|.. .....+...+ +.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999876653 334443 2233444444 559999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++++++.+..|+..+.......+.|+++|+||+|+.++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 9999999999988888776445568999999999999764
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5.5e-27 Score=150.40 Aligned_cols=118 Identities=36% Similarity=0.645 Sum_probs=102.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|++|||||||++++.+..+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 99 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV 99 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998777665555543 55556777788888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 100 YDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCS
T ss_pred EECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCc
Confidence 9999999999999888888773 34579999999999994
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=4.4e-27 Score=149.35 Aligned_cols=125 Identities=35% Similarity=0.605 Sum_probs=98.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc-hhHhHHhhccCCcEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-FTAMRDLYMKNGQGF 78 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~ 78 (128)
..+||+++|.+|||||||++++.+ ..+...+.++..+.....+.+++..+.+.+||++|... +......+++.++++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 468999999999999999999996 33444444444566677788889988899999999765 455667778889999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++|||++++++|+.+..|+..+.......+.|+++|+||+|+.+++.+
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v 132 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREV 132 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccc
Confidence 999999999999999999888776545568999999999999765554
No 76
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=3.5e-27 Score=147.64 Aligned_cols=121 Identities=32% Similarity=0.636 Sum_probs=91.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEEC-CcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+.+||+++|++|||||||++++.++.+...+.++. .+.....+..+ +..+.+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 46899999999999999999999987766655554 34555566665 55678999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhC---CCCCcEEEEEecCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~ 122 (128)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 99999999999999999888877543 36899999999999954
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=7e-27 Score=147.71 Aligned_cols=119 Identities=18% Similarity=0.362 Sum_probs=99.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+...+.++..... ..+... .+.+.+||+||++.+...+..+++++|++++|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE-EEEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 468999999999999999999998877666556554332 233333 45699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++++++.+..|+..+.......+.|+++|+||+|+.+.
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 999999999999999888876444578999999999999754
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=5.3e-27 Score=149.88 Aligned_cols=121 Identities=36% Similarity=0.630 Sum_probs=103.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|++|||||||++++.+..+...+.++. .+.....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 46899999999999999999999987766665555 35556667778888889999999999999998999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC---CCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~ 122 (128)
|||++++.+++.+..|+..+...... .+.|+++|+||+|+.+
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 99999999999999988887764432 5789999999999974
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=3.6e-27 Score=149.74 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=97.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
...||+++|.+|||||||++++.++.+.. .+.++.. .....+. ...+.+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999988766 5556654 2233333 444569999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC-------CCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDT-------DDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~ 123 (128)
|||++++++|+.+..|+..+...... .++|+++|+||+|+.+.
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 99999999999999888887663221 38999999999999876
No 80
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-26 Score=147.18 Aligned_cols=119 Identities=27% Similarity=0.447 Sum_probs=97.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcE-------------------------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQ------------------------------- 50 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------------------- 50 (128)
.+||+++|++|||||||++++.+..+...+.++.. +.....+...+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999877666655553 3444445555443
Q ss_pred ------EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 51 ------CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 51 ------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..+.+||+||++.+......+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| ..++
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~ 162 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKF 162 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-C
T ss_pred cCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccc
Confidence 789999999999999999999999999999999999999999998888887632 399999999999 4433
Q ss_pred e
Q psy784 125 V 125 (128)
Q Consensus 125 ~ 125 (128)
+
T Consensus 163 ~ 163 (208)
T 3clv_A 163 Q 163 (208)
T ss_dssp C
T ss_pred c
Confidence 3
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=146.95 Aligned_cols=119 Identities=19% Similarity=0.357 Sum_probs=99.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.+||+++|.+|||||||++++.++. +...+.++.. .....+.+++ ..+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999866 4445544443 4455566665 459999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCC--CCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~ 123 (128)
|||++++.+++.+..|+..+...... .+.|+++|+||+|+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 99999999999999998888774333 68999999999999764
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=4.7e-27 Score=149.80 Aligned_cols=117 Identities=19% Similarity=0.345 Sum_probs=91.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+. .+.+|.... ...+.+++ +.+.+||+||++.+...+..+++++|++++|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 4689999999999999999999987653 334444332 45566666 5699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++++|+++..|+..+.......+.|+++|+||+|+.+
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 99999999999999998887644457899999999999975
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.6e-26 Score=146.51 Aligned_cols=117 Identities=19% Similarity=0.361 Sum_probs=98.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++||+++|++|||||||++++.++.+. .+.++... ....+.+++ +.+.+||+||++.+...+..+++++|++++|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4679999999999999999999987764 33444433 355666666 5699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
||++++++++++..|+..+.......+.|+++|+||+|+.+
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 99999999999999998887654557899999999999975
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=2.5e-26 Score=142.57 Aligned_cols=118 Identities=22% Similarity=0.309 Sum_probs=97.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+.. +.++.. .....+.+++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG-FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc-cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 35899999999999999999999877643 334433 3344555554 4599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 999999999999888888776444478999999999999765
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.8e-27 Score=147.52 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=94.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+. .+.++.. .....+.+++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999999987665 4444443 2234455555 5699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++++++.+..|+..+.......+.|+++|+||+|+.++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 999999999999999888877444578999999999999763
No 86
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=3.1e-27 Score=152.67 Aligned_cols=121 Identities=28% Similarity=0.603 Sum_probs=103.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
..+||+++|.+|||||||+++++.+.+...+.++.. +.....+..++..+.+.+||+||++.+...+..++++++++++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 568999999999999999999777655555555553 5555667778888899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
|||++++.+++.+..|+..+... ..++|+++|+||+|+.+.+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCS
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCcccccc
Confidence 99999999999999998888874 3589999999999997643
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=9.1e-27 Score=147.81 Aligned_cols=118 Identities=21% Similarity=0.394 Sum_probs=92.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+.. +.+|.. .....+...+ +.+.+||+||++.+...+..+++++|++++|
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999876643 233333 3334454444 5699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++++++.+..|+..+.......+.|+++|+||+|+.+.
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 999999999999988888776444568999999999999764
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=1.5e-26 Score=145.47 Aligned_cols=119 Identities=24% Similarity=0.349 Sum_probs=96.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|++|||||||++++.++.+. .+.++.. .....+.+++ +.+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g-~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG-FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT-EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC-eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999999986542 2333333 3334555554 5599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||++++++++.+..|+..+.......+.|+++|+||+|+.+.+
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 9999999999998888877664445789999999999997653
No 89
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.3e-28 Score=155.78 Aligned_cols=123 Identities=38% Similarity=0.708 Sum_probs=99.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.+||+++|.+|||||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 48999999999999999999998776655444443 55567777888888999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
||++++.+++.+..|+..+.. ....+.|+++|+||+|+.+++++
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ilv~nK~Dl~~~~~v 156 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDR-YASENVNKLLVGNKCDLTTKKVV 156 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHS-CC-CCSEEEEC-CCSSCC--CCC
T ss_pred EECCCHHHHHHHHHHHHHHHH-hccCCCCEEEEEECccCCccccC
Confidence 999999999999998888866 34458999999999999876654
No 90
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=5.8e-27 Score=151.01 Aligned_cols=124 Identities=27% Similarity=0.508 Sum_probs=98.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhcee-EEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
..+||+++|.+|||||||++++.++.+...+.++..... ...+.. .+..+.+.+||+||++.+...+..+++++|+++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 468999999999999999999998777665555554322 223333 234478999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+.+++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~ 135 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKI 135 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----C
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccc
Confidence 999999999999999988888774 3456899999999999876554
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=9.7e-27 Score=146.21 Aligned_cols=118 Identities=20% Similarity=0.317 Sum_probs=97.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+ ..+.++... ....+.+++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS-SCEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce-eeEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 568999999999999999999998776 333344332 234455555 5599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++++++.+..|+..+.......+.|+++|+||+|+.+.
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 999999999999998888876444578999999999999763
No 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.94 E-value=1.6e-26 Score=145.97 Aligned_cols=118 Identities=18% Similarity=0.284 Sum_probs=97.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+++||+++|++|||||||++++.++.+.. +.+|.. .....+..++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999999998876643 334443 3344455554 4599999999999999988999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++++++.+..|+..+.......+.|+++|+||+|+.+.
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 999999999999888888776444578999999999999765
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.6e-26 Score=144.98 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=94.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|++|||||||++++.++.+ ..+.++.. .....+.+++ ..+.+||+||++.+...+..+++++|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 478999999999999999999998765 33444443 3344555555 5599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999999999999988888876444678999999999999764
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=1.5e-25 Score=144.05 Aligned_cols=121 Identities=17% Similarity=0.300 Sum_probs=93.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCc-EEEEEEEeCCCccchhH-hHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQ-QCMLEILDTAGTEQFTA-MRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 79 (128)
+.+||+++|++|||||||++++.++.+...+.++..+.. .+.+++. .+.+.+||+||++.+.. .+..+++++++++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 568999999999999999999999877776654443332 3555543 56799999999999988 7888899999999
Q ss_pred EEEeCCChh-HHHHHHHHHHHHHhh--hCCCCCcEEEEEecCCCCCCc
Q psy784 80 LVYSITAQS-TFNDLSDLREQILRV--KDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 80 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+|||+++.. ++.....++..+... ....+.|+++|+||+|+.+.+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 999999854 566666666555442 234579999999999998754
No 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.93 E-value=2.7e-25 Score=150.28 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=94.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch-----hHhHHhhccC
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-----TAMRDLYMKN 74 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 74 (128)
..+||+++|++|||||||+++++++ .+......++.+.....+.+.+ .+.+.+||+||++.+ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 4689999999999999999999886 3322222333333444555544 567999999999988 6778888999
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhh-hCCCCCcEEEEEecCCCCC
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~ 122 (128)
++++++|||++++++++++..|...+... ...+++|+++|+||+|+.+
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999998776655442 2256899999999999987
No 96
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.93 E-value=8.4e-26 Score=143.03 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=89.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCC-----------Chh-ceeEEEE-EECCcEEEEEEEeCCCccchhHhHH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDP-----------TIE-DSYRKQV-EVDGQQCMLEILDTAGTEQFTAMRD 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~-----------~~~-~~~~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (128)
.+||+++|++|||||||++.+.+. +...+.+ +.. +.....+ ..++..+.+.+||+||++.+...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 589999999999999999766653 3333222 111 1111112 3456678899999999999999999
Q ss_pred hhccCCcEEEEEEeCC------ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSIT------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+++++|++++|||++ +.++++.+..|+..+. ....+.|+++|+||+|+.++
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTC
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccc
Confidence 9999999999999999 5567777777766652 24578999999999999764
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=2.5e-25 Score=151.03 Aligned_cols=119 Identities=31% Similarity=0.587 Sum_probs=104.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVY 82 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (128)
.++++++|.+|+|||||++++.++.+...+.++..+.....+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 234 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF 234 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEE
Confidence 48999999999999999999999888777777877777777888899989999999999999999999999999999999
Q ss_pred eCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 83 SITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|++++.+++.+. .|...+... ..++|+++|+||+|+.+.
T Consensus 235 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 235 SLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTC
T ss_pred eCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccc
Confidence 999999999987 566666553 348999999999999653
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.93 E-value=2.3e-26 Score=144.94 Aligned_cols=121 Identities=21% Similarity=0.389 Sum_probs=88.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCCCCCChh-ceeEEEEEE---CCcEEEEEEEeCCCccchhHhHHhhccCCc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIE-DSYRKQVEV---DGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (128)
++|++++|++|||||||++++.+. .+...+.++.. +.....+.. ++..+.+.+||++|++.+...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 689999999999999999999984 44444444432 322232222 235667999999999999998888999999
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 77 GFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+++.
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~ 129 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQ 129 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHH
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchh
Confidence 99999999987 5899999998877653 35789999999999987544
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=6.3e-28 Score=154.20 Aligned_cols=120 Identities=31% Similarity=0.609 Sum_probs=102.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+...+.++..+.....+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 45899999999999999999999887777766777666666667777888899999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++.+++.+. .|+..+.. ..++.|+++|+||+|+.+.
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~--~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDD 149 (204)
Confidence 9999999999887 56555544 2348999999999999764
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=1.1e-24 Score=138.84 Aligned_cols=123 Identities=31% Similarity=0.559 Sum_probs=101.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.++++++|++|||||||++++.+..+...+.++.. +.....+.+++..+.+.+||++|++.+......+++.++++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 48999999999999999999999877655555543 45567788899888899999999999988888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+|+.+..+++++..|+..+.. ....+.|+++++||+|+.+.+.+
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~~ 128 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRAV 128 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCS
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEECcccccccCc
Confidence 999999999998888776655 34457899999999999765443
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=3.5e-25 Score=140.78 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=87.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEE-CCcEEEEEEEeCCCccchhHhH---HhhccCCcE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMR---DLYMKNGQG 77 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~~~ 77 (128)
+.+||+++|.+|||||||++++.+....................+ .+..+.+.+||+||++.|.... ..+++++++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 468999999999999999998877432221111111111222223 2566779999999999987776 889999999
Q ss_pred EEEEEeCCCh--hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 78 FILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 78 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++|||++++ ++++.+..|+..+.. ..++.|+++|+||+|+.+
T Consensus 99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 99 LIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSC
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCc
Confidence 9999999997 666777666666543 356899999999999865
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.2e-25 Score=149.72 Aligned_cols=119 Identities=23% Similarity=0.394 Sum_probs=92.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+||+++|.+|||||||++++.++.+.... +|.. .....+... .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~-~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT-EEEEEEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc-eEEEEEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 3579999999999999999999987764433 3322 223334444 45699999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||++++.+|+.+..++..+.......++|+++|+||+|+.+..
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 9999999999999888888775555789999999999997653
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=4.5e-24 Score=152.24 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=98.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
+.+|++++|.+|||||||++++.++.+.. +.+|.. .....+...+ +.+.+|||+|++.+...+..+++++|++++|
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG-FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccc-eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 56899999999999999999999877543 333433 3334444444 4599999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||++++++|+.+..|+..+.......++|+++|+||+|+.+.
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999999999999999998877555578999999999999764
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=5.4e-24 Score=134.95 Aligned_cols=122 Identities=31% Similarity=0.559 Sum_probs=102.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILV 81 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (128)
.++++++|++|||||||++++.+..+...+.++.. +.....+.+++..+.+.+||++|.+.+...+..+++.++++++|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 47999999999999999999999877666555544 44567788889888899999999999888888889999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 82 YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+|+.+..+++++..|+..+.. ....+.|+++++||+|+.+.+.
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~-~~~~~~~i~~v~nK~Dl~~~~~ 151 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRD-HADSNIVIMLVGNKSDLRHLRA 151 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCC
T ss_pred EECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccc
Confidence 999999999998888776654 3445789999999999976543
No 105
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1e-24 Score=137.92 Aligned_cols=119 Identities=17% Similarity=0.246 Sum_probs=88.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccC----CcEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKN----GQGF 78 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~~~~ 78 (128)
.++|+++|++|||||||++++.+..+.... .+... ..........+.+||+||+..+...+..++.. ++++
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 122 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEP----LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL 122 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCC----ceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEE
Confidence 579999999999999999999987653311 01110 01111123348999999999887777776665 8999
Q ss_pred EEEEeCC-ChhHHHHHHHHHHHHHhhh---CCCCCcEEEEEecCCCCCCcee
Q psy784 79 ILVYSIT-AQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 79 i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++|+|++ +..++..+..|+..+.... ...+.|+++|+||+|+.+.+.+
T Consensus 123 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 123 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred EEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 9999999 8999999988888776643 3468999999999999876654
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=7.8e-24 Score=131.25 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=83.2
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCC-ChhceeEEEEEECCcEEEEEEEeCCCccchh------HhHHhhcc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFT------AMRDLYMK 73 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 73 (128)
|+.++++++|++|||||||++++.+..+.....+ +..+.....+..++. .+.+||+||++.+. .....+++
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 7889999999999999999999998654332222 233444555666654 59999999988764 33455554
Q ss_pred --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 74 --NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+++++++|+|.++.++. ..|+..+.. .+.|+++|+||+|+.+++.
T Consensus 79 ~~~~~~~i~v~D~~~~~~~---~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 79 NEKPDLVVNIVDATALERN---LYLTLQLME----MGANLLLALNKMDLAKSLG 125 (165)
T ss_dssp HHCCSEEEEEEETTCHHHH---HHHHHHHHH----TTCCEEEEEECHHHHHHTT
T ss_pred cCCCCEEEEEecCCchhHh---HHHHHHHHh----cCCCEEEEEEchHhccccC
Confidence 89999999999986543 345555443 3789999999999965443
No 107
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.5e-24 Score=138.68 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=91.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCC---CCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccC----C
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKN----G 75 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 75 (128)
.++++++|++|+|||||++++.+..+... +.++... ......+.+||+||++.+...+..+++. +
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET--------TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE--------EeeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 57999999999999999999998765432 2222111 1133458999999999999888888877 8
Q ss_pred cEEEEEEeCC-ChhHHHHHHHHHHHHHhhh---CCCCCcEEEEEecCCCCCCcee
Q psy784 76 QGFILVYSIT-AQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 76 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~v 126 (128)
+++++|+|++ ++.++.....|+..+.... ...++|+++|+||+|+.+.+.+
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 9999999999 8889998888888777643 3468999999999999876543
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=7.9e-24 Score=132.17 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=87.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh--------HHhh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM--------RDLY 71 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 71 (128)
+..|++++|++|||||||++++.+... ...+.++..+.....+..++.. +.+||+||...+... ....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 358999999999999999999998543 2334445556667777777765 889999998643211 1235
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
++++|++++|+|++++.+++. ..|+..+.. ....++|+++|+||+|+.+
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIA-RLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHH-HSCTTCCEEEEEECHHHHC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-hcccCCCEEEEEECccCCc
Confidence 789999999999999888753 456665555 3345799999999999954
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=1.1e-23 Score=131.50 Aligned_cols=112 Identities=26% Similarity=0.326 Sum_probs=86.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+.++|+++|++|||||||++++.++.+...+.++. .+.....+..++.. +.+||+||++.+...+...++.+|++++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 45899999999999999999999877665543333 34444556666665 7899999999999888888999999999
Q ss_pred EEeCCCh---hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 81 VYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 81 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|+|++++ .+++.+. . ....+.|+++|+||+|+.+.
T Consensus 85 v~d~~~~~~~~~~~~l~----~----~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAIN----H----AKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEETTCCCCHHHHHHHH----H----HGGGSCCEEEEEETTTSSCS
T ss_pred EEECCCCCcHHHHHHHH----H----HHhCCCCEEEEEECccCCcC
Confidence 9999883 3443321 1 12357899999999999763
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=5.2e-25 Score=145.41 Aligned_cols=124 Identities=25% Similarity=0.392 Sum_probs=87.8
Q ss_pred ceeEEEEECCC---------CCChHHHHHHHhc---CCCCCCCCCCh--hceeEEE--------------EEECCcEEEE
Q psy784 2 REYKIVVLGSG---------GVGKSALTVQFVQ---GIFVEKYDPTI--EDSYRKQ--------------VEVDGQQCML 53 (128)
Q Consensus 2 ~~~~i~i~G~~---------~~GKstl~~~l~~---~~~~~~~~~~~--~~~~~~~--------------~~~~~~~~~~ 53 (128)
+.+||+++|.+ |||||||++++.+ ..+...+.++. .+..... ...++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 46899999999 9999999999998 45555554543 1211111 1235677789
Q ss_pred EEEe-----------------------CCCccchhHhHHhhcc---------------------CCcEEEEEEeCCCh--
Q psy784 54 EILD-----------------------TAGTEQFTAMRDLYMK---------------------NGQGFILVYSITAQ-- 87 (128)
Q Consensus 54 ~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-- 87 (128)
.+|| +.|++.+...+..+++ ++|++++|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 5556666666666666 79999999999998
Q ss_pred hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 88 STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.+|+.+..|+..+.......++|+++|+||+|+.+++.
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~ 215 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY 215 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH
Confidence 99999999998887743446799999999999976544
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=7.6e-23 Score=132.79 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=80.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCC-CCCChhceeEEEEEECCcEEEEEEEeCCCc------cc----hhHhHHh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDGQQCMLEILDTAGT------EQ----FTAMRDL 70 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------~~----~~~~~~~ 70 (128)
+.++|+++|.+|||||||++++.+..+... ...++.......+...+ ..+.+||+||. +. +.. ...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 358999999999999999999998765422 22233334344444444 45999999998 33 222 233
Q ss_pred hccCCcEEEEEEeCCChhHHHH--HHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 71 YMKNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++..++++++|||++++.++.. ...|+..+.. ...+.|+++|+||+|+.+.+++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~--~~~~~piilv~nK~Dl~~~~~~ 160 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKS--VFSNKSIVIGFNKIDKCNMDSL 160 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT--CC-CCCEEEEEECGGGCC--CC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHH--hhcCCcEEEEEeCcccCCchhh
Confidence 4788899999999999877642 2233433333 2358999999999999876654
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=1.3e-22 Score=124.68 Aligned_cols=113 Identities=23% Similarity=0.264 Sum_probs=79.6
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccc-------hhHhHHhhccC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-------FTAMRDLYMKN 74 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 74 (128)
.|++++|++|+|||||++++.++.+. ....++..+.....+...+.. +.+||+||... +.......++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999986532 233334445556666666664 89999999887 45566678899
Q ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 75 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++++++|+|+++..+... .++..... ..+.|+++|+||+|+.++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~---~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLR---RKGKPVILVATKVDDPKH 123 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHH---HHTCCEEEEEECCCSGGG
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHH---hcCCCEEEEEECcccccc
Confidence 999999999998544322 22222222 157899999999999764
No 113
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=1.4e-23 Score=142.08 Aligned_cols=113 Identities=13% Similarity=0.191 Sum_probs=80.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCC---CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH---hHHhhccCCcEE
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA---MRDLYMKNGQGF 78 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 78 (128)
|++++|.+||||||+++++.++-.+. ...+|...... .+ +..+++++|||+|++.|.. ....++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~v---~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-HF---STLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-EE---CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-EE---ccEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887653322 12334332211 22 2347799999999999964 468899999999
Q ss_pred EEEEeCCCh--hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 79 ILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 79 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++|||++++ +.++.+..|+..+.. ..+++|+++++||+|+.++
T Consensus 77 IlV~Ditd~~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp EEECCCSSCTTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCS
T ss_pred EEEEECCchHHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCch
Confidence 999999997 222333333333322 2568999999999999864
No 114
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=3e-23 Score=138.25 Aligned_cols=115 Identities=18% Similarity=0.199 Sum_probs=84.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH----------hHH
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----------MRD 69 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~ 69 (128)
|++++|+++|.+|||||||+|++.+..... ...+++.+.....+...+.. +.+||+||...+.. ...
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHH
Confidence 789999999999999999999999865432 23344445556666666655 88899999877652 222
Q ss_pred hh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 70 LY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 70 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.+ .+.+|++++|+|.++.++...+..++. . .++|+++|+||+|+.+.+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~----~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLL---E----LGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---H----HTCCEEEEEECHHHHHHT
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---h----cCCCEEEEEECccchhhh
Confidence 23 378999999999998766554433333 3 278999999999986543
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=7.7e-23 Score=129.44 Aligned_cols=116 Identities=15% Similarity=0.254 Sum_probs=78.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh-ceeEEEEEECCcEEEEEEEeCCC----------ccchhHhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 71 (128)
.++|+++|++|||||||++++.++.+...+.++.. .........++ .+.+||+|| ++.+......+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 48999999999999999999998764443333332 11122233333 389999999 77777777777
Q ss_pred ccCC---cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 72 MKNG---QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 72 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++.+ +++++|+|++++.++.... ++..+. ..+.|+++|+||+|+.+.+++
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~----~~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLK----YYGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHH----HTTCCEEEEEECGGGSCGGGH
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCChHHH
Confidence 7776 9999999999877776543 122222 257899999999999876543
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=7.7e-23 Score=128.75 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=84.3
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCC-CCCChhceeEEEEEECCcEEEEEEEeCCCccchh------HhHHhhcc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT------AMRDLYMK 73 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 73 (128)
|+.++++++|++|||||||++++.+..+... +..+..+.....+..++ ..+.+||+||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 6789999999999999999999998543322 22233345556666665 459999999988774 34555554
Q ss_pred --CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 74 --NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.+.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTT
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhcccccc
Confidence 5899999999875 4455555555543 5789999999999965443
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=1.4e-21 Score=131.69 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=83.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCccc--------hhHhHHhh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ--------FTAMRDLY 71 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 71 (128)
+..+++++|.+|||||||+|++++..+.. ....++.......+... ..++.+|||||... +.......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 45689999999999999999999876532 22234444433334433 34599999999776 55666778
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHH-HHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLR-EQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
++.+|++++|+|++++.+... .|+ ..+.. ..++.|+++|+||+|+.+.+.
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~--~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKP--LVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGG--GTTTSCEEEEEECGGGCSSHH
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHh--hcCCCCEEEEEECcccCCchH
Confidence 999999999999987654432 333 33333 125799999999999986543
No 118
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.88 E-value=5e-22 Score=131.58 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=82.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhc------
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYM------ 72 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~------ 72 (128)
|+.++|+++|.+|+|||||+|++++... ...+.+++.......+...+.. +.+|||||+..+......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCee--EEEEECCCCCCcccchHHHHHHHHHH
Confidence 4679999999999999999999998653 3334444445555556666654 99999999877654433332
Q ss_pred ---cCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhhCC-CCCcEEEEEecCCCCCC
Q psy784 73 ---KNGQGFILVYSITAQSTFNDL-SDLREQILRVKDT-DDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ---~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 123 (128)
.+++++++|++++... +... ..++..+...... ...|+++|+||+|+.+.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2789999999987654 3322 3445545442221 23599999999999644
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=2.3e-22 Score=144.59 Aligned_cols=121 Identities=20% Similarity=0.328 Sum_probs=87.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEE---------EECCcEEEEEEEeCCCccchhHhHHhh
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV---------EVDGQQCMLEILDTAGTEQFTAMRDLY 71 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~g~~~~~~~~~~~ 71 (128)
++.+||+++|.+|||||||++++.+..+...+.++....+.... ..++..+.+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 35689999999999999999999998776666555543322211 112335679999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
++.++++++|+|+++. +....|...+..+. ++.|+++|+||+|+.+.+++
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v 168 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNI 168 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCccccccc
Confidence 9999999999999865 55566777776642 47899999999999876654
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.5e-21 Score=132.06 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=86.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCccchh----------HhHHh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT----------AMRDL 70 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~ 70 (128)
.-.|+++|.+|||||||+|+|.+..+.. ....++........... ...++.+|||||...+. .....
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 4589999999999999999999876542 23334444444445544 13459999999985543 55667
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
.++.+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+.
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGS
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCC
Confidence 88999999999999998888877665665544 478999999999997
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=8.1e-23 Score=128.67 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=82.9
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCC-----------ccchhHhHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG-----------TEQFTAMRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 72 (128)
+||+++|++|||||||++++.+..+...+.++.. .....+... .+.+||+|| ++.+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT-TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc-ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999776655444332 112233333 489999999 667777777777
Q ss_pred cC-CcEEEEEEeCCChhHHHHH-HHHHHH--------HHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KN-GQGFILVYSITAQSTFNDL-SDLREQ--------ILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+. ++++++|+++.+..++.++ ..|... +.......+.|+++|+||+|+.+.+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 77 7777777777777788776 344321 2222334689999999999998753
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=1.3e-22 Score=134.06 Aligned_cols=112 Identities=16% Similarity=0.154 Sum_probs=83.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH----------hHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----------MRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 72 (128)
.+|+++|.+|||||||+|+|.+.... ..+.+++.+.....+...+.. +.+||+||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL--IEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE--EEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE--EEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 47999999999999999999986432 233444456666677777764 99999999877653 444555
Q ss_pred --cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 --KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+++|++++|+|+++.+++..+..+ + ...+.|+++|+||+|+.+.+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l----~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---L----FELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---H----TTSCSCEEEEEECHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---H----HHcCCCEEEEEEChhcCCcC
Confidence 889999999999987665544322 2 23489999999999986544
No 123
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.87 E-value=5.2e-22 Score=131.28 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=83.1
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH------hHHhhc-
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA------MRDLYM- 72 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 72 (128)
++.++|+++|++|||||||+|+|.+..+. ..+..++.+.....+...+ ..+.+||+||...+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35789999999999999999999986543 2233334444445555544 4599999999876653 224444
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 73 -KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
..+|++++|+|.++.++.. .|+..+.. .+.|+++++||+|+.+.+.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccc
Confidence 5899999999999876543 34444433 4799999999999965443
No 124
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=127.54 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=77.5
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCC---ChhceeEEEEEECCcEEEEEEEeCCCcc-----------chhHh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDP---TIEDSYRKQVEVDGQQCMLEILDTAGTE-----------QFTAM 67 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----------~~~~~ 67 (128)
+.+||+++|++|||||||+|+|++........+ ++.......+...+.. +.+|||||.. .+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998665433222 3334555566666665 8999999943 34444
Q ss_pred HHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHh-hhCCCCCcEEEEEecCCCCCCcee
Q psy784 68 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR-VKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
....+++++++++|+|+++..... ..++..+.. .......|+++|+||+|+.+.+.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 555677889999999997543311 112222221 111234699999999999776544
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=3.8e-22 Score=141.48 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=72.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhH--------Hhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR--------DLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 72 (128)
.++|+++|.+|||||||+|+|.+.. +.....+++.+.....+..++.. +.+|||||...+.... ...+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 5799999999999999999999854 33444556666666777777755 9999999987766443 3368
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+++|++++|+|.+++.+++.+..+...+.. ..+.|+++|+||+|+.+.+.
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~---l~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA---HPAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH---CTTSEEEEEEECTTSCTTTH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh---cCCCCEEEEEECcCCCCccc
Confidence 899999999999998887654333333333 22799999999999987653
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1e-21 Score=130.64 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=84.6
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH------hHHhhc-
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA------MRDLYM- 72 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 72 (128)
|+.++|+++|++|||||||+|++.+..+.. .....+.+.....+...+.. +.+||+||...+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhh
Confidence 788999999999999999999999865432 23333445555666666665 89999999887665 445555
Q ss_pred -cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 -KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.++|++++|+|.++.+ ....++..+.. ....|+++++||+|+.+.+
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFE---MEVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHH---TTCCSEEEEEECHHHHHHH
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHh---cCCCCEEEEEEChhcCccc
Confidence 7899999999999764 33334444444 2238999999999986543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=1e-21 Score=130.73 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=79.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC-CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh------HhHHhhcc--
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT------AMRDLYMK-- 73 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 73 (128)
.++|+++|++|||||||+|++.+.. ....+.+++.+.....+ .. ...+.+||+||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5799999999999999999999854 33344333333333333 33 3459999999988775 34455554
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++|++++|+|+++.+++. .|...+.. .+.|+++++||+|+.+.+
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~----~~~p~ilv~NK~Dl~~~~ 123 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---YLTTQLIE----TGIPVTIALNMIDVLDGQ 123 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---HHHHHHHH----TCSCEEEEEECHHHHHHT
T ss_pred CCCEEEEEecCCchHhHH---HHHHHHHh----cCCCEEEEEEChhhCCcC
Confidence 699999999999865543 34444433 579999999999996543
No 128
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=3.1e-21 Score=121.78 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=76.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCC----------ccchhHhHHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 72 (128)
.+||+++|++|||||||++++.+..... ..++............+.. +.+||+|| ++.+......++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNSK--YYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETTT--EEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECCc--EEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4799999999999999999999866332 2222221112222222333 78999999 666777777777
Q ss_pred cCC---cEEEEEEeCCChhHH--HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KNG---QGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~~---~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+.+ +++++|+|.++..+. ..+..|.. . .+.|+++|+||+|+.+++
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~----~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---S----LNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCGG
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHH---H----cCCCEEEEEEChhcCChH
Confidence 665 899999999875433 33222222 2 278999999999997543
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1e-21 Score=138.28 Aligned_cols=116 Identities=21% Similarity=0.243 Sum_probs=84.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCc----------cchhHhHH-
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT----------EQFTAMRD- 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~- 69 (128)
.+|++++|.+|||||||+|++++... ...+.+++.+.....+..++.. +.+|||||+ +.|...+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHH
Confidence 47999999999999999999998654 3344556666666677777776 899999997 55555544
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
..++.+|++++|+|++++.+++... |...+.. .+.|+++|+||+|+.+.++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE----AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH----TTCEEEEEEECGGGSCCCT
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH----cCCcEEEEEECccCCCcch
Confidence 4788899999999999988877753 4443432 5799999999999987543
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2e-21 Score=136.75 Aligned_cols=116 Identities=22% Similarity=0.227 Sum_probs=74.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCcc--------chhHhHHh
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE--------QFTAMRDL 70 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 70 (128)
|...+|+++|.+|||||||+|+|.+.... ....+++.+.......+.+.. +.+|||||.+ .+......
T Consensus 1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 1 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQAEI 78 (436)
T ss_dssp --CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSC--CEEEC---------CHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCce--EEEEECCCCCCcchhHHHHHHHHHHH
Confidence 55689999999999999999999985432 223334444444444444554 9999999985 56667777
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+++.+|++++|+|+.++.+.... ++..+ ....++|+++|+||+|+.+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~--~~~~~---l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADE--EVAKI---LYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHH--HHHHH---HTTCCSCEEEEEECCCC---
T ss_pred HHHhCCEEEEEEeCCCCCCHHHH--HHHHH---HHHcCCCEEEEEECccCccc
Confidence 89999999999999987665432 22222 23468999999999999754
No 131
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=3.6e-20 Score=121.73 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCC-CCC--ChhceeEEEEEECCcEEEEEEEeCCCc--------cchhHhHHh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEK-YDP--TIEDSYRKQVEVDGQQCMLEILDTAGT--------EQFTAMRDL 70 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~ 70 (128)
+.+||+++|.+|||||||+|+|++...... ..+ ++..........++.. +.+|||||. +.+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE--EEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE--EEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 578999999999999999999998654322 222 3334445556666655 899999995 333232323
Q ss_pred h----ccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 71 Y----MKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~----~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
. .+++|++++|+|+++.... ..+..++..+.. ....+.|+++++||+|+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC
Confidence 3 3899999999999853221 222223333222 12236899999999999753
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=5.1e-20 Score=129.74 Aligned_cols=112 Identities=23% Similarity=0.289 Sum_probs=76.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc---------hhHhHHhhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ---------FTAMRDLYM 72 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 72 (128)
.+|+++|.+|||||||+|+|.+... .....+++.+.....+.+.+.. +.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 4799999999999999999998543 3444455566667777777776 89999999664 345566789
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+++|++++|+|+.++.+.... ++..... ..++|+++|+||+|+.+
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~---~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLR---KSTVDTILVANKAENLR 124 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHH---HHTCCEEEEEESCCSHH
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHH---HcCCCEEEEEeCCCCcc
Confidence 999999999999876544321 1111111 13789999999999853
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=2.9e-21 Score=124.62 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=76.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC---CCCCCCChhceeEEEEEEC-CcEEEEEEEeCCCc----------cchhHhH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF---VEKYDPTIEDSYRKQVEVD-GQQCMLEILDTAGT----------EQFTAMR 68 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~~ 68 (128)
.++|+++|.+|||||||+|+|.+... .....+++... ...... .....+.+|||||. +.+....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 57999999999999999999998652 22222222222 222333 33345899999994 3445555
Q ss_pred HhhccC---CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 69 DLYMKN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 69 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
..+++. +|++++|+|.++..+... ..++..+. ..++|+++|+||+|+.+.++
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~----~~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFA----PTGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHG----GGCCCEEEEEECGGGSCHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHH----hcCCCEEEEEeccccCChhh
Confidence 555555 788999999987533221 22233232 25789999999999987543
No 134
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=3.9e-21 Score=130.93 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=67.3
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecC
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (128)
..+.+++||++|++.++..|..++++++++++|||++ +..++++...|+..+.......++|+++++||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3456999999999999999999999999999999998 778999999999998885566789999999999
Q ss_pred CCCCC
Q psy784 119 DLEEE 123 (128)
Q Consensus 119 D~~~~ 123 (128)
|+.++
T Consensus 239 DL~~e 243 (340)
T 4fid_A 239 DLFEE 243 (340)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 99754
No 135
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.84 E-value=1.2e-20 Score=125.38 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=78.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHH-------h--
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD-------L-- 70 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~-- 70 (128)
+.++|+++|.+|+|||||+|+|++..+. ....++........+...+ ..+.+|||||...+..... .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4689999999999999999999986542 2233333334344444444 4599999999876542211 1
Q ss_pred hccCCcEEEEEEeCCChhHHHHH-HHHHHHHHhhhC-CCCCcEEEEEecCCCCCCc
Q psy784 71 YMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKD-TDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~ 124 (128)
..+++|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+.+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 23479999999998753 23322 244444444211 1127999999999997654
No 136
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.83 E-value=2.2e-19 Score=118.56 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=77.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC-CCCCCCC--ChhceeEEEEEECCcEEEEEEEeCCCccchh-----------Hh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI-FVEKYDP--TIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----------AM 67 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~ 67 (128)
+.++|+++|++|||||||+|+|++.. +.....+ ++.......+...+.. +.+|||||...+. ..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999855 4333333 3344455556666655 8999999976542 22
Q ss_pred HHhhccCCcEEEEEEeCCChhHH-HHHHHHHHHHHhhhCCCCCcEEEEEe-cCCCCCC
Q psy784 68 RDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGN-KCDLEEE 123 (128)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~ 123 (128)
....++.+|++++|+|+++.... ..+..++..... .....|.++++| |+|+.+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG--EDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC--chhhccEEEEEEcccccCCc
Confidence 23367899999999999862221 222222222211 112457777777 9999753
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=2.3e-20 Score=128.05 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
.+.+.+||++|++.++..|..+++++++++||||+++ ..++++...|+..+.......++|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4569999999999999999999999999999999999 567999999998888754557899999999999
Q ss_pred CCC
Q psy784 120 LEE 122 (128)
Q Consensus 120 ~~~ 122 (128)
+.+
T Consensus 272 L~~ 274 (353)
T 1cip_A 272 LFE 274 (353)
T ss_dssp HHH
T ss_pred chh
Confidence 964
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=2.2e-20 Score=132.14 Aligned_cols=114 Identities=28% Similarity=0.388 Sum_probs=77.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHH--------hhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD--------LYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~ 72 (128)
.++|+++|++|||||||+|+|.+.. +.....+++.+.....+..++.. +.+|||||...+..... ..+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence 5799999999999999999999743 33444556666666667777765 89999999766544332 357
Q ss_pred cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 73 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+.+|++++|+|.+++.+... ..++..+ ...|+++|+||+|+.+.+.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQL 347 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGG
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchh
Confidence 88999999999998766554 2233322 2369999999999987654
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=1.2e-20 Score=129.12 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=86.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccc----hhHhHHhh---ccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ----FTAMRDLY---MKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~~ 76 (128)
+|+++|.+|||||||+++|.+... ...+..++.......+.+.+. ..+.+||+||..+ +......+ +++++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 588999999999999999997542 233444444444455555542 2489999999543 22233333 45699
Q ss_pred EEEEEEeCCC---hhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCC
Q psy784 77 GFILVYSITA---QSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 123 (128)
++++|+|+++ +.+++.+..|...+..+.. ..++|+++|+||+|+.+.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 9999999998 7889999888888877543 357999999999999764
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.83 E-value=2.4e-20 Score=132.47 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=86.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-chh--------HhHHhh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-QFT--------AMRDLY 71 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 71 (128)
.++|+++|.+|||||||+|++.+.. +...+.+++.+.....+..++.. +.+|||||.. .+. ......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 34556667777777788887765 8999999987 543 233457
Q ss_pred ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 72 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++.+|++++|+|++++.+++.... +.. . .+.|+++|+||+|+.+.
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~----l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LER----I--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHH----H--TTSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHH----h--cCCCEEEEEECcccccc
Confidence 889999999999998877765432 221 1 37899999999999753
No 141
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=3.5e-21 Score=132.11 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=65.5
Q ss_pred cEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecC
Q psy784 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118 (128)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (128)
..+.+.+||++|++.++..+..++++++++++|||++ +..++++...|+..+.......++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5678999999999999999999999999999999998 788999999999988875445789999999999
Q ss_pred CCCCC
Q psy784 119 DLEEE 123 (128)
Q Consensus 119 D~~~~ 123 (128)
|+.++
T Consensus 261 DL~~~ 265 (354)
T 2xtz_A 261 DIFEK 265 (354)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99654
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=9.8e-21 Score=128.51 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCC----------ChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
.+.+++||++|++.++..|.+++++++++++|||++ +..++++...|+..+.......++|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 466999999999999999999999999999999654 6778998888998888755567899999999999
Q ss_pred CCCCc
Q psy784 120 LEEER 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+.+++
T Consensus 246 L~~~k 250 (327)
T 3ohm_A 246 LLEEK 250 (327)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 97643
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=3.8e-20 Score=130.89 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=83.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCCCCCChhceeEEEEEECCcEEEEEEEeCCC----------ccchhHhHHh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG----------TEQFTAMRDL 70 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 70 (128)
.++++++|.+|+|||||+|++.+.. ....+.+++.+.....+..++.. +.+||||| ++.+......
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 5799999999999999999999743 33444555666666677777765 89999999 6777776654
Q ss_pred -hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 71 -YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 71 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
+++++|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+.+.++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSCCCS
T ss_pred HHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEEChhcCCCch
Confidence 7899999999999997543222 223333322 5799999999999987554
No 144
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=4.6e-20 Score=131.28 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
+++||+++|.+++|||||+++|+.. .+... ....+.+.....+. ..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--TH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--CS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--cC
Confidence 4689999999999999999999753 11110 00111122222233 33
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHH-----HHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-----LSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
...+.+||+||++.|.......+..+|++++|+|+++..++.. .......+.. .....|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~--~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS--SLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH--HTTCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH--HcCCCcEEEEEECcCcccc
Confidence 4459999999999999999999999999999999998754322 1111111222 1223579999999999863
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.8e-20 Score=132.56 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=75.6
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCC--------ccchhHhHHh
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAG--------TEQFTAMRDL 70 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~ 70 (128)
|+..+|+++|.+|||||||+|+|.+.... ....+++.+.........+. .+.+||||| ++.+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS--CCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc--eEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 56679999999999999999999985442 22223333333333333344 599999999 7778888888
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+++++|++++|+|..+..+.. ..++..+ ....++|+++|+||+|+.+.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~--d~~l~~~---l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA--DEEVAKI---LYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH--HHHHHHH---HTTCCSCEEEEEECC-----
T ss_pred hHhhCCEEEEEEeCCCCCChH--HHHHHHH---HHHcCCCEEEEEECccchhh
Confidence 999999999999987643322 2233322 23478999999999999754
No 146
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=3.8e-19 Score=124.12 Aligned_cols=120 Identities=18% Similarity=0.114 Sum_probs=84.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-----------hceeEEE-----EEE---CCcEEEEEEEeCCCcc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-----------EDSYRKQ-----VEV---DGQQCMLEILDTAGTE 62 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-----------~~~~~~~-----~~~---~~~~~~~~~~D~~g~~ 62 (128)
++++|+++|++|+|||||+++|.+........... ....... ... ......+.+||+||++
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 56899999999999999999998743211100000 0000000 000 1122569999999999
Q ss_pred chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.|.......+..+|++++|+|+++..++.+...++..+... ...|+++++||+|+.+.+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence 99999999999999999999999877666666666555442 235899999999997653
No 147
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.81 E-value=5.8e-20 Score=128.63 Aligned_cols=115 Identities=24% Similarity=0.282 Sum_probs=80.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHh-------HHhhcc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM-------RDLYMK 73 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~ 73 (128)
.++|+++|+.|+|||||++++.+..+. ....+++.+.....+...+.. .+.+|||||+..+... ...+++
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 579999999999999999999986542 334445556666677776652 5899999998866543 455788
Q ss_pred CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 74 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
++|++++|+|+...+. ...|+..+.. .++|+++|+||+|+.+.+.
T Consensus 113 ~aD~vllVvD~~~~~~---~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 113 RADCGILVTDSAPTPY---EDDVVNLFKE----MEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp SCSEEEEECSSSCCHH---HHHHHHHHHH----TTCCEEEECCCCTTTTCCC
T ss_pred cCCEEEEEEeCCChHH---HHHHHHHHHh----cCCCEEEEEeCcCCCCccH
Confidence 9999999999943332 2344454444 2789999999999987653
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.81 E-value=9.4e-19 Score=126.86 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=83.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCCC-----C---------CCChhceeEEEEEE---CCcEEEEEEEeCCCccc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVEK-----Y---------DPTIEDSYRKQVEV---DGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~~-----~---------~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~ 63 (128)
..+++++|+.++|||||+++|+. +.+... . ...+.......+.+ ++..+.+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 35899999999999999999986 222111 0 00011111112222 45567899999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.......++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcccc
Confidence 99999999999999999999999888877777665443 47899999999999764
No 149
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=1e-18 Score=120.42 Aligned_cols=116 Identities=19% Similarity=0.175 Sum_probs=80.3
Q ss_pred eE-EEEECCCCCChHHHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCcc---------chhHhHHhhc
Q psy784 4 YK-IVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE---------QFTAMRDLYM 72 (128)
Q Consensus 4 ~~-i~i~G~~~~GKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~ 72 (128)
++ ++++|.+|||||||+|++.+.... .....++.+.....+.+.+.. +.+|||+|.. .+..... .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 899999999999999999986542 223344445667778887754 8999999962 2333322 57
Q ss_pred cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+|++++|+|++++. ..+....+...+.. ....+.|+++|+||+|+.+.
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKING 307 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCS
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCc
Confidence 8899999999999876 55555555554444 34467899999999999753
No 150
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.81 E-value=7.5e-19 Score=120.89 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=84.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCcEEEEEEEeCCCccchh---------HhHHhhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------AMRDLYM 72 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 72 (128)
.++++++|.+|||||||++++.+..... ....++.......+...+. .+.+|||||..... .......
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYF--RYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTE--EEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCc--eEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4689999999999999999999865321 2223333333444444443 48999999975321 1222345
Q ss_pred cCCcEEEEEEeCCChh--HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 73 KNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
..+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+.+.+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEE 296 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHH
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChH
Confidence 5799999999999876 6777777877776632 289999999999997654
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=4.5e-19 Score=119.54 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=76.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCcc-ch--------hHhHHh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE-QF--------TAMRDL 70 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~--------~~~~~~ 70 (128)
+..+++++|++|||||||+|++.+.... .....++.......+..++. ++.+|||||.. .. ......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~--~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCe--eEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4568999999999999999999986542 12223333333444444443 58999999987 22 222344
Q ss_pred hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.++.+|++++|+|.++ +.....++... ....+.|+++++||+|+..
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~---l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNK---LREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHH---HHSSSSCEEEEEESTTTCC
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHH---HHhcCCCEEEEEECcccCc
Confidence 6788999999999976 22222232222 2245799999999999976
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.80 E-value=7.6e-19 Score=123.74 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=77.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCC------------------------------CCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKY------------------------------DPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 49 (128)
.+++++++|++++|||||+++|+.. .+.... ...+.+.....+...+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 4689999999999999999999652 111100 1111122222333333
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhH---HHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST---FNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
..+.+|||||+++|.......+..+|++++|+|+++... |+........+.. ....++| +++++||+|+.+
T Consensus 95 -~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 95 -KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred -eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HHHcCCCeEEEEeecCCCcc
Confidence 469999999999999999999999999999999998632 1111111111111 1224566 999999999953
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.80 E-value=5.5e-19 Score=128.15 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=80.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcC--CCCCC-----C---------CCChhceeEEEEEE---CCcEEEEEEEeCCCccch
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG--IFVEK-----Y---------DPTIEDSYRKQVEV---DGQQCMLEILDTAGTEQF 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~--~~~~~-----~---------~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~ 64 (128)
.+++++|+.++|||||+++|+.. ..... . ...+.......+.+ ++..+.+.+|||||+.+|
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 58999999999999999999862 22110 0 00011111122223 455678999999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.......++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.
T Consensus 85 ~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 85 SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccc
Confidence 9999999999999999999999877777776665443 37899999999999764
No 154
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-19 Score=129.95 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=79.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCC--------------------------------CCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKY--------------------------------DPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~ 49 (128)
+++||+++|++|+|||||+++|+.....-.. ...+.+.....+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 3689999999999999999999864221100 1112222233344444
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..+.+|||||++.|.......+..+|++++|+|+++.. ++.........+.........|+++|+||+|+.+
T Consensus 245 -~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp -CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred -ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 45999999999999999999999999999999998752 1101111112222211223346999999999986
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=1.9e-19 Score=119.85 Aligned_cols=117 Identities=19% Similarity=0.312 Sum_probs=68.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC-CCCCC-------CCChh-ceeEEEEEECCcEEEEEEEeCCCcc-------chhH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI-FVEKY-------DPTIE-DSYRKQVEVDGQQCMLEILDTAGTE-------QFTA 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~-~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~ 66 (128)
.++|+++|.+|+|||||+|+|++.. +...+ .++.. +.....+..++..+.+.+|||||.. .+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 5899999999999999999988743 33332 22222 3333334445555689999999962 2222
Q ss_pred hH-------Hhhcc-------------CCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 67 MR-------DLYMK-------------NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 67 ~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.. ..++. ++|+++++++.+.......-..++..+ .. ++|+++|+||+|+....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l----~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL----HE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH----TT-TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH----hc-cCCEEEEEeccCCCCHH
Confidence 22 22222 367888888766522111112222222 22 89999999999997543
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.80 E-value=4.1e-19 Score=126.35 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=80.0
Q ss_pred CceeEEEEECCCCCChHHHHHHHhcCC-------CCCC-CCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQGI-------FVEK-YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYM 72 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 72 (128)
|++++++++|+.++|||||+++|.+.. ...+ ....+.+.....+.+++. .+.+||+||+++|.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~--~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENY--RITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTE--EEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCE--EEEEEECCChHHHHHHHHHHH
Confidence 678999999999999999999999754 1111 111122222233444553 599999999999999999999
Q ss_pred cCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 73 KNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 73 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+|++++|+|+++ +.+.+.+. .+. ..++|+++++||+|+.++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~----~~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILD----HFNIPIIVVITKSDNAGT 140 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHH----HTTCCBCEEEECTTSSCH
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHH----HcCCCEEEEEECCCcccc
Confidence 99999999999987 33443332 122 246889999999999763
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.80 E-value=1.1e-18 Score=121.89 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=80.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--------CCCCC--CC--------CChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--------IFVEK--YD--------PTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--------~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
+.++++++|++++|||||+++|.+. .+... .+ ..+.+. ....+......+.+||+||+++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChHH
Confidence 4689999999999999999999862 11100 00 111122 2233333334589999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
|.......+..+|++++|+|+++....+ ...++..+.. .++| +++++||+|+.+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 9998888999999999999999865433 3334443333 3678 899999999975
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=6.7e-20 Score=131.46 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CC---------------CCC------CCCChhceeEEEEEECCcEEEEEEEeCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IF---------------VEK------YDPTIEDSYRKQVEVDGQQCMLEILDTA 59 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~---------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 59 (128)
..+|+++|++|+|||||+++|+.. .. ... ....+.......+.+.+ +.+.+||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP 90 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP 90 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence 468999999999999999999721 10 000 00111122233444444 459999999
Q ss_pred CccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|+.+|.......++.+|++++|+|.++..+.+....|.. +. ..++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH----HcCCCEEEEEeCCCCccc
Confidence 999999999999999999999999998777666654432 22 347899999999999754
No 159
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.79 E-value=2.3e-19 Score=124.69 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=67.4
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (128)
+.+.+||++|++.++..|..++++++++++|||+++ ..+|+++..|+..+.......++|+++++||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 669999999999999999999999999999999999 8899999999999887545678999999999999
Q ss_pred CCCc
Q psy784 121 EEER 124 (128)
Q Consensus 121 ~~~~ 124 (128)
.+++
T Consensus 297 ~~~k 300 (402)
T 1azs_C 297 LAEK 300 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6544
No 160
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.79 E-value=3.7e-19 Score=122.49 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=59.1
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCC----------hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (128)
.+.+.+||++|++.++..|..+++++++++||||+++ ..++++...|+..+.......++|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 3569999999999999999999999999999999999 779999999999888754557899999999999
Q ss_pred CCC
Q psy784 120 LEE 122 (128)
Q Consensus 120 ~~~ 122 (128)
+.+
T Consensus 280 L~~ 282 (362)
T 1zcb_A 280 LLE 282 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 964
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=9.9e-19 Score=123.18 Aligned_cols=115 Identities=24% Similarity=0.281 Sum_probs=77.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhH------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMR------------ 68 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------------ 68 (128)
.++++++|++|||||||+|++.+... .....+++.+.....+.+++.. +.+||++|........
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHHH
Confidence 37999999999999999999998543 3344455556666777888876 7899999975433221
Q ss_pred HhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 69 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...++.++++++++|..+..+.+... +...+ ...+.|+++++||+|+.+.+
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l----~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQR-MAGLM----ERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHH-HHHHH----HHTTCEEEEEEECGGGSTTG
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHH----HHcCCCEEEEEECccCCCch
Confidence 23567899999999999866655422 22222 23578999999999998654
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.79 E-value=1.1e-18 Score=121.65 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=79.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC-------CCCC--CCCCh------hceeEEEEEECCcEEEEEEEeCCCccchhH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI-------FVEK--YDPTI------EDSYRKQVEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~-------~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
++++|+++|+.++|||||+++|.+.. +... .+... .........+......+.+||+||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 47899999999999999999998631 1000 00000 000011122333334589999999999998
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
.....+..+|++++|+|+++....+....+ ..+.. .++| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCC
Confidence 888899999999999999986544433333 22222 4678 789999999975
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.78 E-value=1.4e-18 Score=122.26 Aligned_cols=118 Identities=20% Similarity=0.234 Sum_probs=79.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCCC------------------------------CCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEKY------------------------------DPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 49 (128)
+.++++++|+.++|||||+++|+.. .+.... ...+.+.....+. ..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~--~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--TK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--CS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe--cC
Confidence 4689999999999999999999863 222110 1111111122233 33
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHh---hhCCCC-CcEEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDD-VPMVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~-~p~ivv~nK~D~~~ 122 (128)
...+.+||+||+++|.......+..+|++++|+|+++ .+|++...|...... .....+ .|+++++||+|+.+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3459999999999999999999999999999999998 677644322111111 011123 46999999999976
No 164
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.78 E-value=5e-21 Score=137.17 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=82.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-hhceeEEEEEE-CCcEEEEEEEeCCCccchhHhHHhhccCCcEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEV-DGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (128)
+.++|+++|++++|||||+++|.+..+.....++ +.+.....+.. .+. .+.+|||||++.|...+...+..+|+++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3578999999999999999999875433222222 11111122222 233 4899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 80 LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+|+|+++....+....+.. + ...++|+++++||+|+.+.
T Consensus 81 LVVDa~dg~~~qt~e~l~~-~----~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 81 LVVAADDGVMKQTVESIQH-A----KDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp EECBSSSCCCHHHHHHHHH-H----HTTTCCEEECCBSGGGTTT
T ss_pred EEEECCCCccHHHHHHHHH-H----HHcCCcEEEEEeccccccc
Confidence 9999998665554433322 2 2357899999999999753
No 165
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=3.5e-18 Score=120.93 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=78.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
++++++++|+.++|||||+++|++. .+... ....+.+.....+. ..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--TP 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--CS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--cC
Confidence 4689999999999999999999863 22110 01111111122333 33
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HHH---HHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
...+.+|||||+++|.......+..+|++++|+|+++.. +|+ .....+..+. ..++| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~----~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF----TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH----HcCCCeEEEEEEcccccc
Confidence 446999999999999999999999999999999999753 231 1222222222 23555 999999999974
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=4.2e-18 Score=122.26 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=79.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC--------CCCC-------------hhceeEEEEEECCcEEEEEEEeC
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK--------YDPT-------------IEDSYRKQVEVDGQQCMLEILDT 58 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~--------~~~~-------------~~~~~~~~~~~~~~~~~~~~~D~ 58 (128)
+..+|+++|++|+|||||+++|+.. .+... ...+ +.......+.+.+ ..+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 3579999999999999999999862 11000 0000 0011112233333 45999999
Q ss_pred CCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 59 AGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
||+.+|.......++.+|++++|+|+++...... ...+ ......++|+++++||+|+...+
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~----~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLM----EVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHH----HHHTTTTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHH----HHHHHcCCCEEEEEcCcCCcccc
Confidence 9999999888899999999999999997643222 1222 22334689999999999997643
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.3e-17 Score=117.38 Aligned_cols=116 Identities=18% Similarity=0.074 Sum_probs=76.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC--CCCC----------CCCChhce--------------------eEEEEEECCcE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI--FVEK----------YDPTIEDS--------------------YRKQVEVDGQQ 50 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~--~~~~----------~~~~~~~~--------------------~~~~~~~~~~~ 50 (128)
.++++++|+.++|||||+++|++.. +... ..++.... ......+....
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4899999999999999999998632 1110 00111000 00111222333
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..+.+||+||++.|.......+..+|++++|+|+++....+. ..++..+.. ....|+++++||+|+.+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~---~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL---LGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEEcCcCCc
Confidence 469999999999999988889999999999999998643322 223332322 12236999999999976
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.77 E-value=3e-19 Score=126.64 Aligned_cols=118 Identities=21% Similarity=0.217 Sum_probs=67.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc--CCCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
+.++|+++|+.++|||||+++|+. +.+... ....+.+.....+..++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~- 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH- 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-
Confidence 358999999999999999999975 222100 00011111112233333
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
..+.+||+||+++|.......+..+|++++|+|+++.. +|+....+...+.. ....++| +++++||+|+.+
T Consensus 121 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 121 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHHTTCSSEEEEEECTTSTT
T ss_pred -eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHHcCCCEEEEEEECccCCC
Confidence 45899999999999998888899999999999999863 33322222222222 1234677 999999999964
No 169
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=1.6e-17 Score=116.07 Aligned_cols=116 Identities=22% Similarity=0.172 Sum_probs=76.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC---CCCCCCC--Chh-ceeEEEEEE-------------C--C----cEEEEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI---FVEKYDP--TIE-DSYRKQVEV-------------D--G----QQCMLEIL 56 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~---~~~~~~~--~~~-~~~~~~~~~-------------~--~----~~~~~~~~ 56 (128)
++++|+++|+.++|||||+++|.+.. +..+..+ |.. ......+.. . + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 35899999999999999999998532 2222111 221 111111111 1 1 12679999
Q ss_pred eCCCccchhHhHHhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 57 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 57 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
|+||++.|.......+..+|++++|+|+++. .+.+.+.. +.. ....|+++++||+|+.+.+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~---l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEI---LGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHH---TTCCCEEEEEECTTSSCTT
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHH---cCCCeEEEEEEccCCCCHH
Confidence 9999999998888888899999999999953 34443322 222 1235899999999997643
No 170
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=8.7e-18 Score=123.89 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=82.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCCC-----------------CCCChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVEK-----------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
..+|+++|+.|+|||||+++|+. +.+... ....+.......+.+.+ +.+.+|||||+.+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCccc
Confidence 47999999999999999999984 211100 00111112222334443 4599999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.......++.+|++++|+|.++..+++....|.. +.. .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999999887777665544 322 47999999999999764
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.76 E-value=9.7e-19 Score=126.88 Aligned_cols=113 Identities=23% Similarity=0.211 Sum_probs=78.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCC-CChhceeEEEEEEC----------------CcEEEEEEEeCCCccch
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDSYRKQVEVD----------------GQQCMLEILDTAGTEQF 64 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 64 (128)
+.++|+++|+.++|||||+++|.+........ ..+...-...+... .....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998754322111 11100001111110 01124899999999999
Q ss_pred hHhHHhhccCCcEEEEEEeCCC---hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 65 TAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
...+...++.+|++++|+|+++ +.+++.+.. +. ..++|+++++||+|+.+
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~----~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR----MYRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HH----HTTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HH----HcCCeEEEEeccccccc
Confidence 9998888999999999999998 555554432 22 25789999999999975
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=8.6e-18 Score=112.72 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=75.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCC------CCC-----------------------hhc---------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY------DPT-----------------------IED--------------- 38 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~------~~~-----------------------~~~--------------- 38 (128)
.++|+++|.+|||||||+|+|.+..+.+.. .++ ..+
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999987653221 111 100
Q ss_pred --------eeEEEEEECCcEEEEEEEeCCCcc-------------chhHhHHhhccCCcEEE-EEEeCCChhHHHHHHHH
Q psy784 39 --------SYRKQVEVDGQQCMLEILDTAGTE-------------QFTAMRDLYMKNGQGFI-LVYSITAQSTFNDLSDL 96 (128)
Q Consensus 39 --------~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 96 (128)
.....+.. .....+.+|||||.. .+......+++.++.++ +|+|.++..+......+
T Consensus 106 ~~~gi~~~~~~~~~~~-~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 106 TNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp STTCCCSCCEEEEEEE-TTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred cCCCccccceEEEEeC-CCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00000111 112459999999953 34556667788888666 79999875444332223
Q ss_pred HHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 97 REQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
...+ ...+.|+++|+||+|+.+.+
T Consensus 185 ~~~~----~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 185 AKEV----DPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHH----CTTCSSEEEEEECGGGSCTT
T ss_pred HHHh----CCCCCeEEEEEEccccCCCC
Confidence 3222 34578999999999997653
No 173
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.76 E-value=1.2e-17 Score=123.24 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=82.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhc--CCCCCC-----------------CCCChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ--GIFVEK-----------------YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
..+|+++|++|+|||||+++|+. +.+... ....+.......+.+.+ ..+.+|||||+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence 46899999999999999999985 222110 00111111223344444 4599999999999
Q ss_pred hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.......++.+|++++|+|.++..+.+....|.. +.. .++|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcccc
Confidence 99999999999999999999998877766655443 333 47899999999999764
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.75 E-value=2.1e-19 Score=127.86 Aligned_cols=114 Identities=22% Similarity=0.239 Sum_probs=78.8
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCC-CChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEE
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYD-PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFIL 80 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (128)
+..+++++|+.++|||||+++|.+..+..... ..+.+.....+..++. .+.+|||||++.|...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 45789999999999999999998743322211 1111111112223444 48999999999999999888999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
|+|+++....+.... +..+. ..++|+++++||+|+.+
T Consensus 81 VVda~~g~~~qT~e~-l~~~~----~~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 81 VVAADDGVMPQTIEA-IQHAK----AAQVPVVVAVNKIDKPE 117 (501)
T ss_dssp EEETTTBSCTTTHHH-HHHHH----HTTCCEEEEEECSSSST
T ss_pred EeecccCccHHHHHH-HHHHH----hcCceEEEEEEeccccc
Confidence 999987432222211 12222 25789999999999975
No 175
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.75 E-value=7.4e-18 Score=113.87 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=46.6
Q ss_pred EEEEEeCCCccc-------------hhHhHHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEec
Q psy784 52 MLEILDTAGTEQ-------------FTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNK 117 (128)
Q Consensus 52 ~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (128)
.+.+|||||... +......+++.+|++++|+|..+.. .......+ .......+.|+++|+||
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i----~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL----AKEVDPEGKRTIGVITK 207 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH----HHHHCSSCSSEEEEEEC
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH----HHHhCCCCCcEEEEEcC
Confidence 589999999753 5556667889999999999974332 11111111 12223467899999999
Q ss_pred CCCCCCc
Q psy784 118 CDLEEER 124 (128)
Q Consensus 118 ~D~~~~~ 124 (128)
+|+.+.+
T Consensus 208 ~Dl~~~~ 214 (315)
T 1jwy_B 208 LDLMDKG 214 (315)
T ss_dssp TTSSCSS
T ss_pred cccCCcc
Confidence 9997644
No 176
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=3.8e-19 Score=122.52 Aligned_cols=120 Identities=22% Similarity=0.322 Sum_probs=62.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC-CCCCCCC--------CChh-ceeEEEEEECCcEEEEEEEeCCCc-------cchh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG-IFVEKYD--------PTIE-DSYRKQVEVDGQQCMLEILDTAGT-------EQFT 65 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~-~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~ 65 (128)
.++|+++|++|+|||||+++|++. .+...+. ++.. ......+...+..+.+.+||+||. +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 478999999999999999998763 3322221 1111 111222233455678999999998 5555
Q ss_pred HhHH-------hhccCCc-----------EEEEEEeCCC-hhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 66 AMRD-------LYMKNGQ-----------GFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 66 ~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
.... .+++.++ +.+++|++++ ..++..+...+.. . ...++|+++|+||+|+...+++
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~--~--l~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMK--A--IHNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHH--H--TCS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHH--H--hccCCCEEEEEECCCCCCHHHH
Confidence 4544 4443322 2234455543 3444444321111 1 1367999999999999876543
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.75 E-value=2.1e-18 Score=124.30 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=78.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC---CCCCCChhceeEEEEEECCc------------------------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVEVDGQ------------------------------ 49 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~------------------------------ 49 (128)
.++|+++|.+|+|||||+|+|++..+. ....+++... ..+...+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 469999999999999999999987652 1111221110 00000000
Q ss_pred E----------EEEEEEeCCCccc-----------hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCC
Q psy784 50 Q----------CMLEILDTAGTEQ-----------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD 108 (128)
Q Consensus 50 ~----------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 108 (128)
. ..+.+|||||... +......++.++|++++|+|.++.........++..+ ...+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l----~~~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL----RGHE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT----TTCG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH----HhcC
Confidence 0 2488999999775 5566777889999999999998754444444444433 2346
Q ss_pred CcEEEEEecCCCCCCce
Q psy784 109 VPMVLVGNKCDLEEERV 125 (128)
Q Consensus 109 ~p~ivv~nK~D~~~~~~ 125 (128)
.|+++|+||+|+.+.++
T Consensus 219 ~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp GGEEEEEECGGGSCHHH
T ss_pred CCEEEEEECCCccCHHH
Confidence 89999999999986544
No 178
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.75 E-value=1.9e-18 Score=119.40 Aligned_cols=103 Identities=8% Similarity=0.020 Sum_probs=73.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 84 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (128)
+++++|+.++|||||+++|+.+. .+.+.....+...+. .+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~g-------iTi~~~~~~~~~~~~--~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKG-------TSSDITMYNNDKEGR--NMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEE-------EESSSEEEEECSSSS--EEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-------EEEEeeEEEEecCCe--EEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998211 111122223333344 49999999999998888888999999999999
Q ss_pred CChhHHHHHHHHHHHHHhhhCCCCCcE-EEEEe-cCCCCCC
Q psy784 85 TAQSTFNDLSDLREQILRVKDTDDVPM-VLVGN-KCDLEEE 123 (128)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~ 123 (128)
+. ..+.+...++..+.. .++|. ++++| |+|+ ++
T Consensus 93 ~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~ 127 (370)
T 2elf_A 93 PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HM 127 (370)
T ss_dssp TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CH
T ss_pred CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CH
Confidence 54 333344444444433 35777 99999 9999 53
No 179
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=2.3e-17 Score=115.39 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=76.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCC---CCCCCCC--Chhc-eeEEEEEE-------------C--C----cEEEEEEEe
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGI---FVEKYDP--TIED-SYRKQVEV-------------D--G----QQCMLEILD 57 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~---~~~~~~~--~~~~-~~~~~~~~-------------~--~----~~~~~~~~D 57 (128)
.++|+++|+.++|||||+++|.+.. ...+..+ |... .....+.. . + ....+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 5899999999999999999998532 2222111 2211 11111111 0 1 125799999
Q ss_pred CCCccchhHhHHhhccCCcEEEEEEeCCCh----hHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 58 TAGTEQFTAMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+||++.|.......+..+|++++|+|+++. .+.+.+.. +... ...|+++++||+|+.+.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~---~~~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII---GQKNIIIAQNKIELVDK 152 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH---TCCCEEEEEECGGGSCH
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc---CCCcEEEEEECccCCCH
Confidence 999999988888888899999999999954 33343322 2221 23589999999999764
No 180
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.74 E-value=1.1e-17 Score=125.57 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=83.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCC------C---------CCChhceeEEEEEE--------------CCcEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEK------Y---------DPTIEDSYRKQVEV--------------DGQQC 51 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~------~---------~~~~~~~~~~~~~~--------------~~~~~ 51 (128)
..+|+++|+.++|||||+++|+.. ..... . ...+.......+.+ ++..+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 468999999999999999999863 11110 0 00000111112222 33467
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
.+.+|||||+.+|.......++.+|++++|+|+++..+++....|.... . .++|+++++||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 8999999999999999999999999999999999988887766554433 2 478999999999986
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=5e-17 Score=120.05 Aligned_cols=116 Identities=19% Similarity=0.148 Sum_probs=81.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC--CCCCC-----------C------CCChhceeEEEEEECC-----cEEEEEEEeC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG--IFVEK-----------Y------DPTIEDSYRKQVEVDG-----QQCMLEILDT 58 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~--~~~~~-----------~------~~~~~~~~~~~~~~~~-----~~~~~~~~D~ 58 (128)
..+|+++|+.|+|||||+++|+.. .+... + ...+.......+.+.+ ..+.+.+|||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 468999999999999999999752 11110 0 0000111112233322 3367999999
Q ss_pred CCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 59 AGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
||+.+|.......++.+|++++|+|.++....+....|.. +. ..++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 90 PGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH----HcCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999998766555544432 22 347899999999999764
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=2e-17 Score=122.01 Aligned_cols=118 Identities=17% Similarity=0.269 Sum_probs=79.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhce--------eEEEEEECC-c----------------------
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDS--------YRKQVEVDG-Q---------------------- 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~--------~~~~~~~~~-~---------------------- 49 (128)
..++|+++|.+|+|||||+|+|++....+ ...+++... ...+..+.+ .
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999865433 222332100 000111100 0
Q ss_pred -----------------------E--EEEEEEeCCCccc---hhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHH
Q psy784 50 -----------------------Q--CMLEILDTAGTEQ---FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL 101 (128)
Q Consensus 50 -----------------------~--~~~~~~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 101 (128)
. ..+.+|||||... .......+++++|++++|+|.++..+......|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l- 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI- 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-
Confidence 0 2489999999655 3345556789999999999999887776665443332
Q ss_pred hhhCCCCCcEEEEEecCCCCCC
Q psy784 102 RVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 102 ~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
...+.|+++|+||+|+.+.
T Consensus 227 ---~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 227 ---KGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp ---TTSCCCEEEEEECGGGGGG
T ss_pred ---HhhCCCEEEEEECcccccc
Confidence 2346799999999999654
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=8.1e-17 Score=110.87 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=76.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCCh-hcee------------------------------------------
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSY------------------------------------------ 40 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~-~~~~------------------------------------------ 40 (128)
.+|+++|++|||||||+|+|.+..+.+....+. ....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999976533222111 0000
Q ss_pred ------------EEEEEECCcEEEEEEEeCCCccch-------------hHhHHhhccCCcEEEEEEeCCChhHHHHHHH
Q psy784 41 ------------RKQVEVDGQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFILVYSITAQSTFNDLSD 95 (128)
Q Consensus 41 ------------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 95 (128)
...+. ......+.+||+||...+ ......++++++++++|+|..+..... ..
T Consensus 115 ~g~~~~~s~~~i~l~i~-~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIY-SPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp SCTTCCCCCSCEEEEEE-ETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred cCCCCCcccceEEEEEe-CCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 00111 011224899999997765 566677899999999999876533222 12
Q ss_pred HHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 96 LREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 96 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++..+.. ....+.|+++|+||+|+.+.+
T Consensus 192 ~~~l~~~-~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 192 AIKISRE-VDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHH-SCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHH-hcccCCCEEEEEeCCccCCCc
Confidence 2222222 345678999999999997654
No 184
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.72 E-value=2e-17 Score=126.11 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=78.0
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCC-------CCC--CCCCChh------ceeEEEEEECCcEEEEEEEeCCCccchhH
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGI-------FVE--KYDPTIE------DSYRKQVEVDGQQCMLEILDTAGTEQFTA 66 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~-------~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (128)
+.++|+++|+.++|||||+++|.+.. +.. ..+.... +.....+.+......+.+|||||+++|..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 46899999999999999999998631 000 0000000 00011123333445599999999999998
Q ss_pred hHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 67 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
.....+..+|++++|+|+++....+. ..++..+.. .++| +++++||+|+.+
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 88889999999999999998643332 223333322 3678 799999999985
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=4.4e-17 Score=113.44 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=47.7
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEE---------------------ECC-cEEEEEEEeCCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVE---------------------VDG-QQCMLEILDTAG 60 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g 60 (128)
++++++|.+|||||||+|++.+... ...+..++.+....... +++ ..+.+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998552 22333344333333211 122 246799999999
Q ss_pred ccch----hHhHH---hhccCCcEEEEEEeCCCh
Q psy784 61 TEQF----TAMRD---LYMKNGQGFILVYSITAQ 87 (128)
Q Consensus 61 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 87 (128)
.... ..... ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.70 E-value=2.9e-19 Score=129.73 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=61.2
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC--CCCCC------------------------------CCCChhceeEEEEEECCc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG--IFVEK------------------------------YDPTIEDSYRKQVEVDGQ 49 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (128)
+.++|+++|++++|||||+++|+.. .+... ...++.+.....+...
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-- 253 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-- 253 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--
Confidence 3579999999999999999999641 11100 0011111112222222
Q ss_pred EEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh---HH--HHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF--NDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
...+.+|||||++.|.......+..+|++++|+|+++.. .+ .........+.. ..++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~---~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLR---ALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHH---HSSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHH---HcCCCeEEEEEecccccc
Confidence 345899999999999888888899999999999998632 11 111111111111 23555 999999999975
No 187
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.9e-16 Score=108.40 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=82.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc-CCCCCCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh-------HhHHhhccCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ-GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 75 (128)
.+|+++|.||||||||+|+|.+ .....++..++.+.....+.+.+.. ++++|+||..... .......+.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4899999999999999999998 4444567778888888888888877 8999999954221 2223457889
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhh-hCCCCCcEEEEEecCCCCC
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~ 122 (128)
|++++|+|++++.... .....++... ......|.++++||+|...
T Consensus 151 d~il~vvD~~~p~~~~--~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHK--QIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp SEEEEEEETTSHHHHH--HHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred CccccccccCccHHHH--HHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 9999999999864322 2222233332 1234578899999999743
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.68 E-value=3.7e-16 Score=114.87 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=79.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-----------------hhceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-----------------IEDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
..+++++|+.|+|||||+++|.+.........+ ..........+....+.+.+||+||+..|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 468999999999999999999852211000000 001111222233334569999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
......++.+|++++|+|..+....+.. .++..+.. .++|+++++||+|+.
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999999999999999998876444333 33333333 478999999999987
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=6.7e-16 Score=111.31 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=83.0
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCC---------------------CCCCCChhceeEEEEEECCcEEEEEEEeCCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFV---------------------EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (128)
+|+|+|+.++|||||..+|+. +... +..+..+.......+.+++. .++++||||+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~--~iNlIDTPGH 110 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDR--VVNLLDTPGH 110 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTE--EEEEECCCCG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCE--EEEEEeCCCc
Confidence 799999999999999999963 1110 00011111222334455554 4999999999
Q ss_pred cchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.+|.......++-+|++++|+|....-.-+....|..... .++|.++++||+|+...+
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~-----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM-----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCCEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH-----hCCceEEEEecccchhcc
Confidence 9999999999999999999999998776666665554443 489999999999997643
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=4.5e-16 Score=99.33 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=68.3
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhc-eeEEEEEECCcEEEEEEEeCCCccc----------hhHhHHh
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDGQQCMLEILDTAGTEQ----------FTAMRDL 70 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 70 (128)
+..+++++|++|||||||++++.+..+.....++... .....+...+ .+.+||+||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 3578999999999999999999986532222222221 1222333333 378999999742 2222223
Q ss_pred hc---cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 71 YM---KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 71 ~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
++ +.++++++++|+....++.... ....+ ...+.|+++++||+|+...
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~----~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQ-MIEWA----VDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHH----HHTTCCEEEEEECGGGSCH
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHH-HHHHH----HHcCCCeEEEEecccCCCc
Confidence 33 5688999999998865543211 11111 1357899999999998753
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=3.3e-15 Score=102.61 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=68.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCC-hh-ce-----------------------------------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IE-DS----------------------------------------- 39 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~-~~-~~----------------------------------------- 39 (128)
.++|+++|.+|||||||+|+|.+..+.+..... +. ..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999987653221110 00 00
Q ss_pred ---------eEEEEEECCcEEEEEEEeCCCcc-------------chhHhHHhhccCCc-EEEEEEeCCChhHHHHHHHH
Q psy784 40 ---------YRKQVEVDGQQCMLEILDTAGTE-------------QFTAMRDLYMKNGQ-GFILVYSITAQSTFNDLSDL 96 (128)
Q Consensus 40 ---------~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~ 96 (128)
....+.. .....+.+|||||.. .+..+...++.+.+ +++++.+.+....-.....+
T Consensus 111 ~~~gi~~~~~~~~i~~-~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 111 TNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTCCCCCCEEEEEEE-TTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred cCCCcccCceEEEEec-CCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0001111 112359999999953 34445555665655 55556666542221111112
Q ss_pred HHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 97 REQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
.......+.|+++|+||+|+.+.+
T Consensus 190 ----~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 190 ----AKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp ----HHHHCTTCTTEEEEEECGGGSCTT
T ss_pred ----HHHhCcCCCceEEEeccccccCcc
Confidence 222334679999999999997643
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.63 E-value=3.3e-15 Score=102.66 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=58.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccchhH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQFTA 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~ 66 (128)
.++++++|.+|||||||+|+|.+... ...+..++.+.....+.+.+.. ..+++||+||...+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 36899999999999999999998553 2233333433333445554421 4599999999876542
Q ss_pred h-------HHhhccCCcEEEEEEeCCC
Q psy784 67 M-------RDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 67 ~-------~~~~~~~~~~~i~v~d~~~ 86 (128)
. ....++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 2234789999999999986
No 193
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.61 E-value=6.2e-15 Score=103.07 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=80.0
Q ss_pred EEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECCcEEEEEEEeCCCccch-------hHhHHhhccCCc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-------TAMRDLYMKNGQ 76 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~~ 76 (128)
.++++|++|||||||++++.+... ...+..++.......+...+ ...+.++|+||.... .........+++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987532 12333333333444555554 234899999996431 111122356799
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHhhhC-CCCCcEEEEEecCCCCCC
Q psy784 77 GFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 123 (128)
.+++++|++ ...+.++..+...+..+.. ....|.++++||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 6677777777777666422 236799999999999753
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.60 E-value=1.7e-14 Score=106.77 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=82.2
Q ss_pred EEEEECCCCCChHHHHHHHhcC--C------CCCC--C---------CCChhceeEEEEEECC-----cEEEEEEEeCCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG--I------FVEK--Y---------DPTIEDSYRKQVEVDG-----QQCMLEILDTAG 60 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~--~------~~~~--~---------~~~~~~~~~~~~~~~~-----~~~~~~~~D~~g 60 (128)
+|+|+|+..+|||||..+|+.. . .... + +.-+.......+.+.+ ..+.++++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 7999999999999999999731 1 0000 0 0000111122233332 356799999999
Q ss_pred ccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
|.+|.......++-+|++++|+|+...-.-+....|...... ++|.++++||+|+...
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc
Confidence 999999999999999999999999987666666666655544 8999999999999654
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=105.06 Aligned_cols=119 Identities=20% Similarity=0.337 Sum_probs=62.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCC-CCCC-------CChh-ceeEEEEEECCcEEEEEEEeCCCccchh-------H
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFV-EKYD-------PTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFT-------A 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~-~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~ 66 (128)
.++|+++|++|||||||+++|.+..+. +... ++.. ......+...+....+++||++|...+. .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 368999999999999999999986542 1111 1111 1111111112334568999999975431 1
Q ss_pred h------------------HHhhccCCcEEEEEEeCCCh-hHHHHHH-HHHHHHHhhhCCCCCcEEEEEecCCCCCCcee
Q psy784 67 M------------------RDLYMKNGQGFILVYSITAQ-STFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERVV 126 (128)
Q Consensus 67 ~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~v 126 (128)
. ...++.++++.+++|+.... .++.... .|+..+. .++|+|+|+||+|+...+++
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence 1 01234445554555555432 3444433 2333331 37999999999999875543
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.55 E-value=4.9e-15 Score=108.54 Aligned_cols=113 Identities=21% Similarity=0.179 Sum_probs=80.9
Q ss_pred EEEEECCCCCChHHHHHHHhc--CCCCCC---CCC-C-----h--------hceeEEEEEECCcEEEEEEEeCCCccchh
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ--GIFVEK---YDP-T-----I--------EDSYRKQVEVDGQQCMLEILDTAGTEQFT 65 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~--~~~~~~---~~~-~-----~--------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (128)
+|+|+|+.++|||||..+|+. +..... ... + . .......+.+++ ..++++|||||.+|.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSSTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHHH
Confidence 689999999999999999974 222110 000 0 0 011112233344 458999999999999
Q ss_pred HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 66 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
......++-+|++++|+|+...-.-+....|...... ++|.++++||+|+...+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccCC
Confidence 9999999999999999999987655555545444433 78999999999997643
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.51 E-value=2.2e-13 Score=93.95 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=56.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCC-CCCCCCChhceeEEEEEECC-------------------cEEEEEEEeCCCccc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDG-------------------QQCMLEILDTAGTEQ 63 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~ 63 (128)
++++++|.+|||||||+|++.+... ...+..++.+.......+.+ ....+++||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997432 23333333322233333322 124599999999765
Q ss_pred hh-------HhHHhhccCCcEEEEEEeCCC
Q psy784 64 FT-------AMRDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 64 ~~-------~~~~~~~~~~~~~i~v~d~~~ 86 (128)
+. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223345789999999999986
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=1.4e-14 Score=97.63 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=59.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC-CCCCCC--------CCChh-ceeEEEEEECCcEEEEEEEeCCCc-------cchh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG-IFVEKY--------DPTIE-DSYRKQVEVDGQQCMLEILDTAGT-------EQFT 65 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~-~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~ 65 (128)
.++|+++|++|||||||+++|++. .++... .++.. ......+...+....+++||++|. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 479999999999999999998874 333222 01111 111112222344567999999997 4444
Q ss_pred HhHH-------hhccC-------------CcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 66 AMRD-------LYMKN-------------GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 66 ~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.... .+++. +++++++.+.+. .+++.... ..+.. . ....|+++|+||.|+...++
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~-l-~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKA-I-HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHH-H-TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHH-H-HhcCCEEEEEEeCCCCCHHH
Confidence 3332 22221 234444444322 23333321 22222 2 24689999999999986543
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=8.5e-13 Score=97.90 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=70.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhce------------------------------------------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDS------------------------------------------ 39 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~------------------------------------------ 39 (128)
..+|+++|..++|||||+|+|.+..+-+ ....++...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4699999999999999999999865522 111111100
Q ss_pred ---------eEEEEEECCcEEEEEEEeCCCccc-------------hhHhHHhh-ccCCcEEEEEEeCCChhHHHHHHHH
Q psy784 40 ---------YRKQVEVDGQQCMLEILDTAGTEQ-------------FTAMRDLY-MKNGQGFILVYSITAQSTFNDLSDL 96 (128)
Q Consensus 40 ---------~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~ 96 (128)
....+...+ ...+.++||||-.. .......+ ...+|++++|+|.+...........
T Consensus 131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 011111111 11378999999443 12222223 3678999999999864332222112
Q ss_pred HHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 97 REQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
... ....+.|+++|+||+|+.+.
T Consensus 210 l~~----L~~~g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKE----VDPQGQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHH----HCTTCSSEEEEEECTTSSCT
T ss_pred HHH----HHhcCCCEEEEEeCcccCCc
Confidence 222 33457999999999999764
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.47 E-value=7.7e-14 Score=96.79 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=51.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-CCCCChhceeEEEEEECCc---------------EEEEEEEeCCCccchhH
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRKQVEVDGQ---------------QCMLEILDTAGTEQFTA 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 66 (128)
.++++++|.+|||||||+|+|.+..... .+..++.+.....+.+.+. ...+++||+||......
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 4789999999999999999999864422 2333444444555555442 22489999999776543
Q ss_pred -------hHHhhccCCcEEEEEEeCCChhH
Q psy784 67 -------MRDLYMKNGQGFILVYSITAQST 89 (128)
Q Consensus 67 -------~~~~~~~~~~~~i~v~d~~~~~s 89 (128)
.....++++|++++|+|+.+.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 44567899999999999986543
No 201
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.43 E-value=1.4e-14 Score=97.67 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=78.5
Q ss_pred HHHHHHhcCCCC-CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChh-HHHHHHH
Q psy784 18 ALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSD 95 (128)
Q Consensus 18 tl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 95 (128)
+++.++..+.+. ..+.+|..+.+...+..++ .+.+||+ ++.+...++.+++++|++++|||++++. +++.+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 466677777777 6777887766554432222 4899999 8999999999999999999999999987 7888888
Q ss_pred HHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 96 LREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 96 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
|+..+.. .++|+++|+||+|+.++++
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYDEDD 132 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCCHHH
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCCchh
Confidence 8876644 4799999999999986543
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=1.9e-12 Score=85.16 Aligned_cols=73 Identities=16% Similarity=0.066 Sum_probs=42.7
Q ss_pred EEEEEEeCCCccchhHhHH------hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 51 CMLEILDTAGTEQFTAMRD------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
+.+.+|||||......... ..+.. +++++++|.....+..................+.|+++|+||+|+.+.+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4599999999876543321 23455 8888888876432222221111111111112368999999999997643
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=1.9e-13 Score=94.00 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=42.4
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+.++||||.... .......+|++++|+|....+..+.+. ....+.|+++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcCh
Confidence 45899999995432 333458899999999987655443221 11234699999999999753
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=88.14 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=36.0
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+.++||+|.... .......+|++++|+|.+.....+.+.. . ....|.++|+||+|+.+
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~------~---il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR------G---IIEMADLVAVTKSDGDL 226 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH------H---HHhcCCEEEEeeecCCC
Confidence 4899999995322 2344678999999999987543322211 1 12458899999999964
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.27 E-value=1.9e-12 Score=88.60 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=39.3
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+.++||||..+.... ....+|++++|+|.+.....+.+.. .. .+.|.++|+||+|+.+.
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence 35999999997655433 4688999999999976543221111 00 14688999999999753
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=7.8e-11 Score=81.85 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=61.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC--CCCCCCChhceeEEEEEECCcE---------------EEEEEEeCCCccc--
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQ-- 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~-- 63 (128)
..++.++|++|||||||+|+|.+... ...+..++.+.....+.+.+.. ..+.++|+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999998543 3344455555556667666521 2489999999432
Q ss_pred -----hhHhHHhhccCCcEEEEEEeCCC
Q psy784 64 -----FTAMRDLYMKNGQGFILVYSITA 86 (128)
Q Consensus 64 -----~~~~~~~~~~~~~~~i~v~d~~~ 86 (128)
+.......++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344556788999999999874
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=2.8e-12 Score=88.61 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=66.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC-----CCC--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchh--------Hh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG-----IFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--------AM 67 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~ 67 (128)
..+++++|.+|+|||||+|+|++. ... .....++.+ ...+..... +.++||||-.... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999974 111 112222222 223333333 7899999944222 11
Q ss_pred HHhhc--cCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 68 RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 68 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
...++ ...+.++++++....-.+..+.. ..+....+.|+++++||.|..+..+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccccc
Confidence 12222 56788888888743211111110 1112345789999999999976543
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=4.5e-10 Score=78.70 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=59.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCC--Chhce-eEEEEEE--CCcEEEEEEEeCCCccch--------------
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDP--TIEDS-YRKQVEV--DGQQCMLEILDTAGTEQF-------------- 64 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~--~~~~~-~~~~~~~--~~~~~~~~~~D~~g~~~~-------------- 64 (128)
++++++|++|+|||||++.|.+..+...... ..... ....+.. .+....+.++|++|-...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5699999999999999999998533211100 11111 1111112 222336899999984321
Q ss_pred hHhH----Hhh---------ccCC--c-EEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 65 TAMR----DLY---------MKNG--Q-GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 65 ~~~~----~~~---------~~~~--~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
.... ... ...+ | +++|+.|....-+-.. ..+..... .++|+|+|.||+|.....+
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC-SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh-hCCCEEEEEcchhccchHH
Confidence 1111 111 1112 2 3555666543322222 22333233 6899999999999976544
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.12 E-value=2.1e-11 Score=78.28 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=60.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC-------CCCCChh--------ceeEEEEEE----------------CCcEE
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE-------KYDPTIE--------DSYRKQVEV----------------DGQQC 51 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~-------~~~~~~~--------~~~~~~~~~----------------~~~~~ 51 (128)
..+++++|.+|||||||++++....... ....+.. ......+.. .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 3689999999999999999998632110 0000100 000011111 11224
Q ss_pred EEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
.+.+||++|+.... ..+....+.+++|+|+...... . +..... .+.|+++|+||+|+.+
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~---~~~~~~----~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--V---EKHPEI----FRVADLIVINKVALAE 168 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--H---HHCHHH----HHTCSEEEEECGGGHH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--h---hhhhhh----hhcCCEEEEecccCCc
Confidence 58899999851111 0111356788999998765321 1 111111 2478999999999964
No 210
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.12 E-value=5.6e-11 Score=78.95 Aligned_cols=23 Identities=35% Similarity=0.768 Sum_probs=21.7
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++++|++|+|||||+|.|++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999999987
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=1.4e-11 Score=85.08 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC------C--CCCCCChhceeEEEEEECCcEEEEEEEeCCCccchhH--------
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF------V--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------- 66 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------- 66 (128)
..+++++|.+|+|||||+|+|++... . .....++.. ...+...+. +.++||||-.....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 35799999999999999999997421 1 111122222 222333332 78999999543221
Q ss_pred hHHhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCce
Q psy784 67 MRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 125 (128)
Q Consensus 67 ~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (128)
....+ ....+..+++++......+..+.. ..+....+.|+++++||+|..+..+
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccccc
Confidence 11122 355677788877632211111100 1112345789999999999976543
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.00 E-value=5.2e-13 Score=86.06 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIF 28 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~ 28 (128)
.++++++|.+|||||||++++....+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 47999999999999999999987543
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=6.1e-10 Score=76.09 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=36.0
Q ss_pred EEEEEEeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
..+.++||+|...... .....+|.+++++|....+..+.+... + ...|.++++||+|+.+
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIAVNKADDGD 207 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEEEECCSTTC
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEEEEchhccC
Confidence 3489999999654322 235789999999998654322111100 0 1246678889999753
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.87 E-value=1.6e-08 Score=72.42 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=39.2
Q ss_pred EEEEEEeCCCccchhH-hH---Hhh--ccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcE-EEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTA-MR---DLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~ 123 (128)
+.+.++||||...... .. ... ...++.+++|+|.......... ...+.. .+|+ .+|+||+|....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECTTSCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCCccccc
Confidence 4589999999663221 11 111 2268999999999875331111 111211 2575 899999998753
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=3.7e-09 Score=70.57 Aligned_cols=55 Identities=27% Similarity=0.410 Sum_probs=34.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCC--CCCCChhceeEEEEEECCcEEEEEEEeCCCcc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 62 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (128)
.++++++|.+|+|||||+|++.+..... ....++.... .+.. +.. +.++||||-.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~--~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKE--LELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTT--EEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCC--EEEEECcCcC
Confidence 4789999999999999999999854221 1112222221 2222 333 8899999954
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=4e-09 Score=69.71 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=34.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCC--CCCChhceeEEEEEECCcEEEEEEEeCCCccc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (128)
++++++|.+|+|||||+|++.+...... ...++... ..+.. +.. +.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~-~~~--~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSL-ENG--VKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEEC-TTS--CEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEe-CCC--EEEEECCCccc
Confidence 4899999999999999999998554221 11111111 12222 233 78999999554
No 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.72 E-value=8.3e-09 Score=69.50 Aligned_cols=60 Identities=22% Similarity=0.101 Sum_probs=49.8
Q ss_pred ccchhHhHHhhccCCcEEEEEEeCCChh-HHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCCc
Q psy784 61 TEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124 (128)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (128)
++.+......+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCcc
Confidence 5666666777899999999999999886 88888888876544 679999999999997654
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.72 E-value=1.8e-08 Score=73.31 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=37.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChhceeEEEE----EE-CCcEEEEEEEeCCCccc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV----EV-DGQQCMLEILDTAGTEQ 63 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~g~~~ 63 (128)
..+|+++|.+|+|||||+|+|++....-...+++........ .. ......+.++||||-..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 468999999999999999999985422122222221111111 11 12223489999999543
No 219
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.62 E-value=3e-08 Score=63.32 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=40.9
Q ss_pred CCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh--C--CCCCcEEEEEecC-CCCC
Q psy784 58 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--D--TDDVPMVLVGNKC-DLEE 122 (128)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~--~~~~p~ivv~nK~-D~~~ 122 (128)
.+|+..++..|.++|.++|++|||+|.++++.++ ....+..+..+. . ..+.|++|++||. |++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 3478999999999999999999999999986544 333332332222 1 2578999999995 6754
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.62 E-value=2.5e-07 Score=64.82 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=56.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh--ce-eEEEEEECCcEEEEEEEeCCCccc----hhHhHH-hhccCC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE--DS-YRKQVEVDGQQCMLEILDTAGTEQ----FTAMRD-LYMKNG 75 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~-~~~~~~ 75 (128)
..++++|++|||||||+|.+.+...+..-.-... +. ....+.-....-.+.++|++|... ...... ..+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 4789999999999999999998322111100000 00 001111122111378999998432 111111 123344
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCC
Q psy784 76 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121 (128)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (128)
+..++ ++..... -+.+ .....+.. .+.|+++|.||.|+.
T Consensus 150 ~~~~~-lS~G~~~-kqrv-~la~aL~~----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI-DIAKAISM----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp SEEEE-EESSCCC-HHHH-HHHHHHHH----TTCEEEEEECCHHHH
T ss_pred CCeEE-eCCCCcc-HHHH-HHHHHHHh----cCCCeEEEEecCccc
Confidence 55444 5654211 1111 11122222 468999999999874
No 221
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.60 E-value=2.8e-07 Score=67.48 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
.++++|+.|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998853
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.56 E-value=3.3e-07 Score=64.57 Aligned_cols=64 Identities=22% Similarity=0.086 Sum_probs=38.5
Q ss_pred EEEEEEeCCCccchhHhHH----h--hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCC-c-EEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMRD----L--YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-P-MVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~ 122 (128)
+.+.++||||......... . ....++.+++|+|...... .... +..+. ... | ..+|+||+|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~--~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFK--EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHH--TTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHh--hcccCCeEEEEeCCCCcc
Confidence 3489999999664322111 1 1235889999999875432 1111 12211 234 5 899999999864
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=5.6e-07 Score=63.47 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=39.0
Q ss_pred EEEEEEeCCCccchhHhH----H--hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 51 CMLEILDTAGTEQFTAMR----D--LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~----~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+.+.++||+|........ . .....++.+++|+|......-.+. ...+.. ...+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~----~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKE----ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHH----SCTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHh----hCCCeEEEEECCCCccc
Confidence 458999999954322111 1 123357889999999865332222 222222 22366799999998753
No 224
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.41 E-value=1.3e-07 Score=63.22 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=45.1
Q ss_pred CCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhh----CCCCCcEEEEEec-CCCCC
Q psy784 58 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK----DTDDVPMVLVGNK-CDLEE 122 (128)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~p~ivv~nK-~D~~~ 122 (128)
.+|++..+..|..+|.+.|++|||+|.++++.++ ....+..+..+. ...+.|++|++|| .|+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 4678999999999999999999999999987654 332222221111 1367899999997 58864
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=9.4e-06 Score=54.53 Aligned_cols=64 Identities=19% Similarity=0.081 Sum_probs=38.5
Q ss_pred EEEEEEeCCCccc--hhHhHH------hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCC
Q psy784 51 CMLEILDTAGTEQ--FTAMRD------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLE 121 (128)
Q Consensus 51 ~~~~~~D~~g~~~--~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 121 (128)
+.+.++||||... ...... .....++.+++|+|..... +.......+.. ..| ..+|+||.|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGT 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence 4589999999776 322111 1244689999999987432 22111222211 355 78899999976
Q ss_pred C
Q psy784 122 E 122 (128)
Q Consensus 122 ~ 122 (128)
.
T Consensus 253 ~ 253 (297)
T 1j8m_F 253 A 253 (297)
T ss_dssp T
T ss_pred c
Confidence 4
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=1.4e-06 Score=61.29 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=37.5
Q ss_pred EEEEEEeCCCccc----hhHh--HHh--hccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQ----FTAM--RDL--YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~----~~~~--~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (128)
+.+.++||||... .... ... .....+.+++|+|........+.. ..+.. .-.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a---~~f~~----~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA---SRFHQ----ASPIGSVIITKMDGTA 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH---HHHHH----HCSSEEEEEECGGGCS
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH---HHHhc----ccCCcEEEEecccccc
Confidence 4588999999543 1111 111 122458899999998653322222 22221 1236788999999864
No 227
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.10 E-value=1.2e-07 Score=67.33 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=53.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhcCCCCCCCCCChh---ceeEEEEEECCcEEEEEEEeCCCccc--hhHhH--------H
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDGQQCMLEILDTAGTEQ--FTAMR--------D 69 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 69 (128)
...|+++|.+|+||||++++|...-.... ..+.. +.... ...+......+||..|... ....+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~--~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRR--DMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHH--HHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhh--hhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999975311000 00000 00000 0011112246788888632 22222 3
Q ss_pred hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHh
Q psy784 70 LYMKNGQGFILVYSITAQSTFNDLSDLREQILR 102 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 102 (128)
.++....+.++|+|.++. +.+....|...+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 455567788899999986 44444555544443
No 228
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.10 E-value=7.2e-06 Score=57.96 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-|.|+|+.++|||+|+|+|++
T Consensus 69 vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 478999999999999999985
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.02 E-value=4.9e-06 Score=57.48 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=43.7
Q ss_pred CccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
..+.|......++++++++++|+|+.+.. ..|...+..+ ..+.|+++|+||+|+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCc
Confidence 35789999999999999999999999853 2333334442 247899999999999764
No 230
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.96 E-value=5.2e-06 Score=51.73 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+++++|++|||||||++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999886
No 231
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.93 E-value=6.9e-06 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
--++++|++|||||||++.|.+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 232
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.91 E-value=6.6e-06 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++++|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.85 E-value=4.5e-06 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.1
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|++|||||||+|.|.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 36899999999999999999873
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.84 E-value=1.2e-05 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=20.9
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+.--++++|++|||||||++.|.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 344689999999999999999986
No 235
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.82 E-value=1.2e-05 Score=49.89 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=20.9
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+...|++.|++||||||+++.|..
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6667899999999999999998864
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.82 E-value=1.1e-05 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
--++++|++||||||+++.|.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4589999999999999999976
No 237
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.82 E-value=8.5e-06 Score=56.29 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=42.9
Q ss_pred EeCCCccchhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 56 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 56 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.+++ ++.|......++++++++++|+|+.+..+ .|...+..+ ..+.|+++|+||+|+.+.
T Consensus 54 v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 54 VPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLPR 113 (369)
T ss_dssp ------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSCT
T ss_pred CcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCCC
Confidence 3443 78899999999999999999999998763 222223332 247899999999999764
No 238
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.82 E-value=1.1e-05 Score=50.38 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.5
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|++||||||+++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999985
No 239
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.82 E-value=1.1e-05 Score=51.20 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|||||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.82 E-value=2.3e-05 Score=52.27 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=40.8
Q ss_pred EEeCCCcc-chhHhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 55 ILDTAGTE-QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 55 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
+-..|||. .........+.++|+++.|+|+.++.+..+. .+..+. .++|.++|+||+|+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC--SSSCEEEEEECGGGSCH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH--CCCCEEEEEECcccCCH
Confidence 44578876 4445556679999999999999998776431 111111 57999999999999864
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.80 E-value=1.2e-05 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-.++++|++||||||+++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.80 E-value=1.6e-05 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...++|+|++|||||||++.|.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.80 E-value=1.3e-05 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|||||||++.|.+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999987
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.79 E-value=1.3e-05 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|||||||++.|.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999886
No 245
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.8e-05 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=20.9
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+...|++.|.+||||||+++.|..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6778899999999999999998854
No 246
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.76 E-value=2.2e-05 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+...|++.|.+||||||+++.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5667899999999999999999875
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.76 E-value=1.4e-05 Score=49.26 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=16.3
Q ss_pred EEEEECCCCCChHHHHHH
Q psy784 5 KIVVLGSGGVGKSALTVQ 22 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~ 22 (128)
-++++|++|||||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.75 E-value=1.8e-05 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
--++++|++||||||+++.|...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.74 E-value=0.0001 Score=51.98 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=36.8
Q ss_pred EEEEEEeCCCccchhH-hHH-----hhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCc-EEEEEecCCCCC
Q psy784 51 CMLEILDTAGTEQFTA-MRD-----LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE 122 (128)
Q Consensus 51 ~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (128)
+.+.++||||...... ... ......+.+++|+|....... ......+.. ..+ .-+|+||.|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecCCCCc
Confidence 4589999999654321 111 123467888999998754322 111121211 234 357899999854
No 250
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.74 E-value=2.2e-05 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.-.++++|++||||||+++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998763
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.72 E-value=2.4e-05 Score=48.15 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|...-|++.|.+||||||+++.|..
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455689999999999999999876
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.72 E-value=1.9e-05 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|||||||++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998876
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.71 E-value=2.3e-05 Score=49.19 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.6
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
|+|+||+||||+||+++|+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.69 E-value=3.6e-05 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+...|+++|.+||||||+++.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 255
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=3.3e-05 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-.++++|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.68 E-value=2.6e-05 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-++++|++||||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999975
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.68 E-value=2.7e-05 Score=47.69 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..++++|++||||||+++.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998876
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.67 E-value=2.8e-05 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999874
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.66 E-value=3.1e-05 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...++++|++||||||+++.|.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998876
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.65 E-value=2.5e-05 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988863
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.65 E-value=3e-05 Score=48.32 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 262
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.65 E-value=3.2e-05 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.7
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
.++++|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999743
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.64 E-value=3.2e-05 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.3
Q ss_pred eEEEEECCCCCChHHHHHHH
Q psy784 4 YKIVVLGSGGVGKSALTVQF 23 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l 23 (128)
.-|+++|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999999
No 264
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.64 E-value=3.5e-05 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|+++|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.63 E-value=3.3e-05 Score=47.15 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|++||||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 266
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.63 E-value=3.4e-05 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998873
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.63 E-value=3.5e-05 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++++|++||||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 268
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.62 E-value=3.2e-05 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998873
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.61 E-value=3.4e-05 Score=50.91 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.61 E-value=3.8e-05 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 271
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.61 E-value=3.5e-05 Score=50.97 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999873
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.61 E-value=4.2e-05 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHh
Q psy784 4 YKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~ 24 (128)
-.++++|++||||||+++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.60 E-value=4e-05 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.60 E-value=3.8e-05 Score=50.64 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++||||||+++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999876
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.59 E-value=3.8e-05 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998863
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.59 E-value=4.4e-05 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|+.|||||||++.+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999886
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.59 E-value=3.8e-05 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998863
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.58 E-value=4.3e-05 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998773
No 279
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.58 E-value=4.3e-05 Score=51.49 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999885
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.58 E-value=4.4e-05 Score=48.07 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|+++|.+||||||+++.|..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=5.1e-05 Score=47.75 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.|+++|++||||||+++.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.57 E-value=4.9e-05 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998873
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.57 E-value=4.3e-05 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998863
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.56 E-value=4.6e-05 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=4.2e-05 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+||||+++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999886
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.56 E-value=5.6e-05 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988653
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.56 E-value=4.4e-05 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998873
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.56 E-value=6.1e-05 Score=47.42 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
--++++|++||||||+++.|.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 289
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.55 E-value=5e-05 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.55 E-value=4.7e-05 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998873
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.55 E-value=4.7e-05 Score=50.08 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 292
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.55 E-value=5.1e-05 Score=48.17 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 293
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.55 E-value=4e-05 Score=47.41 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++++|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999876
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.54 E-value=4.6e-05 Score=48.60 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 295
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.54 E-value=5.3e-05 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998873
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.53 E-value=5.6e-05 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998863
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.53 E-value=5.7e-05 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.53 E-value=5.7e-05 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998873
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.52 E-value=6.2e-05 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||+|.|.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 5789999999999999999874
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.52 E-value=5.5e-05 Score=47.61 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+|+++|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999875
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.52 E-value=7.2e-05 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.6
Q ss_pred ceeEEEEECCCCCChHHHHHHHhcC
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
+...|++.|.+||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998763
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.51 E-value=6.5e-05 Score=46.60 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.51 E-value=3.4e-05 Score=49.65 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=14.8
Q ss_pred EEEEECCCCCChHHHHHHHh-c
Q psy784 5 KIVVLGSGGVGKSALTVQFV-Q 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~-~ 25 (128)
-++++|++||||||+++.|. +
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp EEEEECSCC----CHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999998 5
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.50 E-value=5.7e-05 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998873
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.50 E-value=8.3e-05 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+.++++|++||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 306
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.50 E-value=5.7e-05 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998763
No 307
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.49 E-value=6.5e-05 Score=48.52 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=18.2
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy784 5 KIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~ 24 (128)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 308
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.49 E-value=8e-05 Score=50.34 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-++|+|++|||||||++.|.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 5689999999999999998865
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.49 E-value=7.6e-05 Score=46.74 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.49 E-value=5.9e-05 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+++|.+|+||||+++.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 311
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.49 E-value=6.8e-05 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.3
Q ss_pred eEEEEECCCCCChHHHHHHHh
Q psy784 4 YKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~ 24 (128)
-.++++|++|||||||+|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999998
No 312
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.48 E-value=5.1e-05 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++|+|++|||||||++.|.+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.48 E-value=7e-05 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 314
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=8e-05 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|.+||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 315
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.47 E-value=7.8e-05 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|+++|++||||||+++.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 316
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.47 E-value=9.1e-05 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.1
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+..+|++.|++||||||+++.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 317
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=0.0001 Score=45.74 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+...++++|.+||||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.47 E-value=6.2e-05 Score=48.03 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 319
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.47 E-value=7.8e-05 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988743
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.46 E-value=9.3e-05 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...++|+|+.||||||+++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998876
No 321
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.44 E-value=6.8e-05 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999873
No 322
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.44 E-value=4.5e-05 Score=51.44 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++|+|++|||||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 689999999999999998876
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=0.00011 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..-+++.|++||||||++++|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.43 E-value=0.0001 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
...++++|++||||||+++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998763
No 325
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.43 E-value=6e-05 Score=46.50 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=16.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+...|++.|.+||||||+++.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999864
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.43 E-value=0.0001 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCChHHHHHHHh
Q psy784 3 EYKIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~ 24 (128)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.43 E-value=9.2e-05 Score=46.12 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.42 E-value=0.00011 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+++|.+||||||+++.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.42 E-value=8.2e-05 Score=45.74 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.42 E-value=0.0001 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+++|.+||||||+++.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.42 E-value=7e-05 Score=45.21 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||+|++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.41 E-value=9.2e-05 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4789999999999999999873
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.41 E-value=3.4e-05 Score=47.76 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|||||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999886
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.41 E-value=9.1e-05 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999873
No 335
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.41 E-value=0.0001 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|+++|+|||||+|.+.+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.40 E-value=9.1e-05 Score=50.97 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++||||||+++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 337
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.40 E-value=8.8e-05 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.5
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.40 E-value=0.0001 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999988873
No 339
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=9.9e-05 Score=48.92 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999986
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.39 E-value=9.8e-05 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999873
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.0001 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999873
No 342
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.39 E-value=0.00038 Score=41.48 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
..+++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999988753
No 343
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.38 E-value=9.8e-05 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 344
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.38 E-value=9.6e-05 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998763
No 345
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.38 E-value=0.00011 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 346
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.38 E-value=0.00013 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.8
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+|.|++|||||||++.|..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988753
No 347
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.37 E-value=0.00014 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
...|+|.|.+||||||+++.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999998764
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.37 E-value=0.00011 Score=47.82 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|++|+||||+++.+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999986
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.37 E-value=0.00011 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4789999999999999999874
No 350
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.37 E-value=0.00011 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 351
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.37 E-value=0.00011 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999873
No 352
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.36 E-value=0.00012 Score=47.46 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+.+.+++.|++||||||+++.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.35 E-value=0.00012 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 354
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.35 E-value=0.0001 Score=50.75 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.34 E-value=0.00018 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+...++++|.+||||||+++.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998865
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.34 E-value=0.00016 Score=43.98 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 357
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.0016 Score=44.19 Aligned_cols=20 Identities=20% Similarity=0.586 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 358
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.33 E-value=0.00013 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|.+||||||+++.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.33 E-value=0.00015 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-++++|++||||||+++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.33 E-value=0.00013 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++||||||+++.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 688999999999999999864
No 361
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.32 E-value=0.00012 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999873
No 362
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00015 Score=44.48 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 363
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.31 E-value=0.00019 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.31 E-value=0.00016 Score=48.71 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-++|+|++|||||||++.|.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998876
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.30 E-value=0.00015 Score=50.18 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++||||||+++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999876
No 366
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.30 E-value=0.00018 Score=46.14 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 367
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 478999999999999999886
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.28 E-value=0.0002 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+-++++|++||||||+++.|.+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 369
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00016 Score=48.63 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|+.||||||++..+.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999865
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.28 E-value=0.00013 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...++++|++||||||+++.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.27 E-value=0.00017 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.329 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.27 E-value=0.00017 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+++|.+||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.27 E-value=9.1e-05 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999999873
No 374
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.00017 Score=47.62 Aligned_cols=20 Identities=30% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
++++|++|+|||||++.+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999999999986
No 375
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.26 E-value=0.00016 Score=50.73 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++||||||+++.+.+
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.25 E-value=0.00022 Score=44.24 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 377
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.25 E-value=0.00023 Score=44.68 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.8
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+. .|+|.|++||||||+++.|..
T Consensus 1 m~~-~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRG-IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCS-EEEEECSTTSSHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHH
Confidence 555 789999999999999998865
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.0002 Score=43.73 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.24 E-value=0.00018 Score=48.94 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999986
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00019 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|.+||||||+++.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.24 E-value=0.00026 Score=44.46 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|.+||||||+++.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.24 E-value=0.00018 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+|+|+.|+||||++.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999864
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.23 E-value=0.00019 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.6
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
--++++|++||||||+++.|.+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 384
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.23 E-value=0.00022 Score=44.06 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+.++|++|+||||+++++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 385
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.23 E-value=0.00017 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=19.6
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|+++|++||||||+++.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.23 E-value=0.00022 Score=45.78 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=18.4
Q ss_pred eeE-EEEECCCCCChHHHHHHHhc
Q psy784 3 EYK-IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~-i~i~G~~~~GKstl~~~l~~ 25 (128)
..| |+++|+|||||+|.+.+|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 45689999999999998854
No 387
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00021 Score=46.56 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||++++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.22 E-value=0.00018 Score=51.83 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++||||||+++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999873
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00021 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.6
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|+++|.+||||||+++.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998874
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.21 E-value=0.00021 Score=45.48 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 391
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.20 E-value=0.00068 Score=45.73 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=36.1
Q ss_pred hhccCCcEEEEEEeCCChhHHHH-HHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 70 LYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
....++|.+++|+|+.++..-.+ +..++.. ....++|.++|+||+|+.++
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~----~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVL----VEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHH----HHTTTCEEEEEEECGGGCCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHH----HHHCCCCEEEEEECCccCch
Confidence 46899999999999997654333 3332222 23468899999999999875
No 392
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00025 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|+++|.+||||||+++.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.20 E-value=0.00021 Score=45.98 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhcC
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
..-+++.|+.||||||+++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999988763
No 394
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.20 E-value=0.00032 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+..|.++|..||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998864
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.19 E-value=0.00029 Score=43.61 Aligned_cols=22 Identities=32% Similarity=0.515 Sum_probs=19.4
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|.+||||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.19 E-value=6.4e-05 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.18 E-value=8.9e-05 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998874
No 398
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.17 E-value=0.00015 Score=47.55 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.1
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-.|+++|++||||||+++.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998864
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.16 E-value=0.00031 Score=42.78 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.16 E-value=0.00027 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||+++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 401
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.15 E-value=0.00022 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=20.9
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+...|++.|++||||||+.+.|..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6677899999999999999998865
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.14 E-value=0.00041 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..-|++.|++||||||+++.|..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 403
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.14 E-value=0.00028 Score=45.06 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||++++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.13 E-value=0.0002 Score=48.47 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=20.4
Q ss_pred CceeE-EEEECCCCCChHHHHHHHhcC
Q psy784 1 MREYK-IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 1 ~~~~~-i~i~G~~~~GKstl~~~l~~~ 26 (128)
|+.+. ++++|+.|||||||++.+.+.
T Consensus 1 m~~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 1 MNPIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp -CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCcccEEEEEecCCCCHHHHHHHHHhh
Confidence 44443 578899999999999999964
No 405
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.13 E-value=0.0004 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..|++.|.+||||||++++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 406
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0002 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.8
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.++|+|+.|||||||++.|.+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999876
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.12 E-value=0.00029 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|+.||||||++..|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 588999999999999999865
No 408
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.12 E-value=0.00024 Score=43.53 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||++++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998875
No 409
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.11 E-value=0.00037 Score=45.40 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+.|+|.|.+||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 410
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.11 E-value=0.00041 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=21.5
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+..-++|.|++|||||+|...|..
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHH
Confidence 5666789999999999999999975
No 411
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.10 E-value=0.00035 Score=41.73 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.5
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
..+++.|++|+|||++++.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.10 E-value=0.00042 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..++++|.+||||||+++.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998764
No 413
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.10 E-value=0.00032 Score=44.35 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 414
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.08 E-value=0.00033 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
+++++|+.|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999874
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.00036 Score=44.78 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999987
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.06 E-value=0.00034 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++||||||+++.|.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 588999999999999999864
No 417
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.06 E-value=0.00039 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998873
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.06 E-value=0.00043 Score=41.69 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.2
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy784 6 IVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~ 24 (128)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999986
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.06 E-value=0.00031 Score=46.77 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999998865
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.05 E-value=0.00016 Score=47.73 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=37.6
Q ss_pred CCCccchh-HhHHhhccCCcEEEEEEeCCChhHHHHHHHHHHHHHhhhCCCCCcEEEEEecCCCCCC
Q psy784 58 TAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123 (128)
Q Consensus 58 ~~g~~~~~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (128)
.|||.... ......+.++|+++.|+|+.++.+..+.. +. +. ++|.++|+||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS---RKETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT---TSEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc---CCCcEEEEECccCCCH
Confidence 46655333 34556789999999999999886654321 11 11 7899999999999864
No 421
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.04 E-value=0.00039 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999876
No 422
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.03 E-value=0.00034 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999998876
No 423
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.03 E-value=0.00039 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.02 E-value=0.00047 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.0
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+|.|.+||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.01 E-value=0.0004 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999998875
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.00041 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999976
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.01 E-value=0.00044 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.00 E-value=0.0004 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
+++|+|++|||||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 429
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.99 E-value=0.0014 Score=46.45 Aligned_cols=20 Identities=30% Similarity=0.247 Sum_probs=17.2
Q ss_pred EEEEECCCCCChHHHHHHHh
Q psy784 5 KIVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~ 24 (128)
=|.++|+.++|||+|+|.++
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 35689999999999999665
No 430
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.99 E-value=0.00053 Score=44.38 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+.++.++|++||||||++.+|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 57999999999999999998854
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00047 Score=43.77 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.99 E-value=0.00045 Score=47.61 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=17.4
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy784 6 IVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~ 24 (128)
.+|+|+.|+||||+++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999986
No 433
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.99 E-value=0.00048 Score=43.24 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+++.|++|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999875
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.98 E-value=0.00045 Score=46.23 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|++|+|||++++.+..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999999986
No 435
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.97 E-value=0.00038 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998876
No 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.97 E-value=0.00036 Score=51.03 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999876
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00044 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|+.|||||||++.|.+.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988873
No 438
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.97 E-value=0.00058 Score=43.30 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.4
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
..++++|++|+|||+++..|..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 439
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.00047 Score=47.83 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999885
No 440
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.00044 Score=46.18 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|++|+|||++++.+..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467779999999999999986
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.96 E-value=0.00067 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+..-|++.|.+||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5677899999999999999999854
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.95 E-value=0.00049 Score=46.37 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999886
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00051 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.|.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999998873
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.94 E-value=0.00066 Score=43.76 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.4
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|+++|++||||||+++.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.90 E-value=0.00032 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999998876
No 446
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.89 E-value=0.00051 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999988875
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.89 E-value=0.00061 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-|+++|.+||||||++++|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999875
No 448
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.87 E-value=0.00042 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998876
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.86 E-value=0.00067 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.|.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998873
No 450
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.86 E-value=0.00075 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++|+|++||||||+...|..
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 451
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.86 E-value=0.00095 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=19.5
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3588999999999999999875
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.00096 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..+++.|++|+|||+++..+..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999986
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00063 Score=49.27 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999873
No 454
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.82 E-value=0.00077 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.710 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 455
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.81 E-value=0.00084 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|||||||++.+.+.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.81 E-value=0.00077 Score=44.92 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 457
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0008 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|++|+|||++++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999986
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.80 E-value=0.0007 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 459
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.00079 Score=44.85 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+|||++++.+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.79 E-value=0.00082 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-+++.|++|+|||++++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999999863
No 461
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.00073 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 462
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.78 E-value=0.00043 Score=46.26 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=17.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 463
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00084 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.||||+|||++++++.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 464
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.00083 Score=43.15 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=17.8
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999887753
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.76 E-value=0.00095 Score=49.03 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.++++|+.|+|||||++.|.+.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999873
No 466
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.74 E-value=0.00052 Score=54.53 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
+++++|++|||||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 799999999999999998876
No 467
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.74 E-value=0.00091 Score=45.14 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999999976
No 468
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00093 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|+||+|||++++++.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999986
No 469
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00091 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.72 E-value=0.00096 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 471
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.72 E-value=0.001 Score=41.50 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
++++|.++||||+++.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.72 E-value=0.001 Score=43.17 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=20.9
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+..-|++.|.+||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999854
No 473
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.72 E-value=0.0014 Score=44.75 Aligned_cols=21 Identities=33% Similarity=0.710 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-|+|+|++|||||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.00099 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.3
Q ss_pred EEEECCCCCChHHHHHHHhcC
Q psy784 6 IVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~~ 26 (128)
++++|+.|+|||||++.+.+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 789999999999999999873
No 475
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.71 E-value=0.00097 Score=43.05 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=17.7
Q ss_pred ceeEEEEECCCCCChHHHHHHHhc
Q psy784 2 REYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 2 ~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
+..-|++.|.+||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 476
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.71 E-value=0.00089 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.++++|++|+||||++..|..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.71 E-value=0.0011 Score=42.32 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=21.4
Q ss_pred CceeEEEEECCCCCChHHHHHHHhc
Q psy784 1 MREYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 1 ~~~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
|+..-|++-|.+||||||.++.|..
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6677899999999999999998864
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.69 E-value=0.0012 Score=41.72 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=17.1
Q ss_pred EEEECCCCCChHHHHHHHh
Q psy784 6 IVVLGSGGVGKSALTVQFV 24 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~ 24 (128)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999985
No 479
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.0012 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998875
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.67 E-value=0.0012 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
=+++.|++|+||||++-.+..+
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999998763
No 481
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.67 E-value=0.00042 Score=45.32 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+++.|++|+|||++++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78899999999999999976
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0011 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.||||+|||.+++++.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 483
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.66 E-value=0.0012 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEECCCCCChHHHHHHHhcC
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~~ 26 (128)
..+++.|++|+|||++++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999999999999864
No 484
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.65 E-value=0.0012 Score=44.47 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.6
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+||||++..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 578999999999999998864
No 485
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.64 E-value=0.0013 Score=44.42 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=18.9
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++|+|++|||||+|...+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478899999999999999975
No 486
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0012 Score=44.71 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEECCCCCChHHHHHHHhc
Q psy784 6 IVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 6 i~i~G~~~~GKstl~~~l~~ 25 (128)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999876
No 487
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.63 E-value=0.0011 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-++++|++|+||||+++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.63 E-value=0.0012 Score=45.18 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
-.+++.|++|+|||++++.+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 489
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.63 E-value=0.0012 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
-+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.001 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.62 E-value=0.0013 Score=44.52 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
.+++.|++|+|||++++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.62 E-value=0.00072 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
.-.++++|++||||||+++.|.+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35789999999999999999875
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.61 E-value=0.00096 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|..||||||+++.|..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998875
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.61 E-value=0.0011 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998863
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.61 E-value=0.0013 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999986
No 496
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.61 E-value=0.0011 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEECCCCCChHHHHHHHhc
Q psy784 5 KIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~ 25 (128)
.+++.|++|+|||++++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=42.01 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.2
Q ss_pred eeEEEEECCCCCChHHHHHHHhc
Q psy784 3 EYKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 3 ~~~i~i~G~~~~GKstl~~~l~~ 25 (128)
...|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.59 E-value=0.0014 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.9
Q ss_pred eEEEEECCCCCChHHHHHHHhc
Q psy784 4 YKIVVLGSGGVGKSALTVQFVQ 25 (128)
Q Consensus 4 ~~i~i~G~~~~GKstl~~~l~~ 25 (128)
..+++.|++|+|||++++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 499
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.58 E-value=0.0016 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEECCCCCChHHHHHHHhcCC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQGI 27 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~~ 27 (128)
.++++|+.|+|||||++.|.++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.57 E-value=0.0013 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEECCCCCChHHHHHHHhcC
Q psy784 5 KIVVLGSGGVGKSALTVQFVQG 26 (128)
Q Consensus 5 ~i~i~G~~~~GKstl~~~l~~~ 26 (128)
-++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999863
Done!