RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy784
(128 letters)
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 258 bits (662), Expect = 1e-90
Identities = 119/127 (93%), Positives = 123/127 (96%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVD QQCMLEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 EEERVVS 127
E+ERVV
Sbjct: 121 EDERVVG 127
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 257 bits (659), Expect = 4e-90
Identities = 91/127 (71%), Positives = 107/127 (84%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
MREYK+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD +LEILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
TEQF +MRDLY+KNGQGFILVYS+ Q +F D+ +R+QI+RVK + VP++LVGNK DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 121 EEERVVS 127
E ER VS
Sbjct: 121 ESEREVS 127
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 255 bits (655), Expect = 3e-89
Identities = 69/127 (54%), Positives = 99/127 (77%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ +K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DL
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 121 EEERVVS 127
E++R VS
Sbjct: 136 EDKRQVS 142
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 255 bits (655), Expect = 4e-89
Identities = 49/127 (38%), Positives = 79/127 (62%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+R K+V+LG VGK++L QFV+G F E YDPT+E++Y K V + + L ++DTAG
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
++++ + ++ G++LVYS+T+ +F + L +++ VP+VLVGNK DL
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 121 EEERVVS 127
ER V
Sbjct: 142 SPEREVQ 148
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 254 bits (652), Expect = 6e-89
Identities = 53/126 (42%), Positives = 86/126 (68%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ KI +LG VGKS+LT+QFV+G FV+ YDPTIE+++ K + V+GQ+ L+++DTAG
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++++ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 122 EERVVS 127
ERV+S
Sbjct: 125 MERVIS 130
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 255 bits (654), Expect = 7e-89
Identities = 69/127 (54%), Positives = 99/127 (77%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ +K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DL
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 121 EEERVVS 127
E++R VS
Sbjct: 132 EDKRQVS 138
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 253 bits (650), Expect = 7e-89
Identities = 69/127 (54%), Positives = 99/127 (77%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ +K++++GSGGVGKSALT+QF+ FVE Y+PT DSYRK+V +DG++ ++ILDTAG
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK DL
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 121 EEERVVS 127
E++R VS
Sbjct: 122 EDKRQVS 128
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 254 bits (651), Expect = 9e-89
Identities = 75/126 (59%), Positives = 93/126 (73%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+K+VV+G GGVGKSALT+QF+Q FV YDPTIEDSY K VDG L+ILDTAG
Sbjct: 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+F AMR+ YM+ G GF+LV++I + +FN++ L QILRVKD DD P+VLVGNK DLE
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127
Query: 122 EERVVS 127
+R V
Sbjct: 128 SQRQVP 133
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 253 bits (649), Expect = 2e-88
Identities = 70/127 (55%), Positives = 94/127 (74%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ YK+VV+G GGVGKSALT+QF Q IFV+ YDPTIEDSY K E+D Q +L++LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 EEERVVS 127
R V+
Sbjct: 136 MHLRKVT 142
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 250 bits (642), Expect = 2e-87
Identities = 81/127 (63%), Positives = 104/127 (81%), Gaps = 1/127 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D++ REQI RVKD+DDVPMVLVGNKCDL
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
Query: 121 EEERVVS 127
R V
Sbjct: 139 -PTRTVD 144
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 249 bits (639), Expect = 4e-87
Identities = 79/127 (62%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M EYK+VV+G+GGVGKSALT+Q +Q FV++ DPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 EEERVVS 127
R V
Sbjct: 121 -AARTVE 126
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 247 bits (634), Expect = 3e-86
Identities = 59/127 (46%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+Y++ V G+GGVGKS+L ++FV+G F E Y PT+ED+YR+ + D C L+I DT G+
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDL 120
QF AM+ L + G FILVYSIT++ + +L + EQI +K D + +P++LVGNKCD
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 121 EEERVVS 127
R V
Sbjct: 122 SPSREVQ 128
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 247 bits (634), Expect = 5e-86
Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
E K+ + G GVGKSAL V+F+ F+ +YDPT+E +YR Q +D + +EILDTAG
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E R+ +M+ G+GF+LVY IT + +F ++ L+ + +K +V ++LVGNK DL
Sbjct: 86 QEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144
Query: 121 EEERVVS 127
+ R VS
Sbjct: 145 DHSRQVS 151
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 246 bits (631), Expect = 1e-85
Identities = 78/127 (61%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
EYK+VV+G+ GVGKSALT+Q +Q FV++YDPTIEDSYRKQV +DG+ C+L+ILDTAG
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPMVLVGNKCDL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
Query: 121 EEERVVS 127
R V
Sbjct: 122 -PSRTVD 127
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 245 bits (628), Expect = 2e-85
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M Y++V+LG GVGK++L F + ++ ED Y + + VDG+ L ++DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 61 TEQF--TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118
E+ + ++ ++ G +++VYSI + +F S+LR Q+ R D VP++LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 119 DLEEERVVS 127
DL R VS
Sbjct: 122 DLARCREVS 130
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 242 bits (619), Expect = 4e-84
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 63
YK+++LG+ GVGKSAL F G+ +Y + + VDG++ L + D +
Sbjct: 3 YKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 64 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121
Query: 124 RVVS 127
R VS
Sbjct: 122 REVS 125
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 242 bits (619), Expect = 1e-83
Identities = 56/128 (43%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+Y++VV G+GGVGKS+L ++FV+G F + Y PTIED+YR+ + D C L+I DT G
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD 119
+ QF AM+ L + G FILV+S+T++ + +L + + I+++K + +D+P++LVGNKCD
Sbjct: 66 SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
Query: 120 LEEERVVS 127
+R V
Sbjct: 126 E-TQREVD 132
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 237 bits (606), Expect = 9e-82
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTA 59
+K++++G GVGKS L F ++P ED+Y +++ VD ++ L + D
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 60 GTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 118
+RD ++ G F++V+S+T + +F+ + + ++ + D+P++LVGNK
Sbjct: 81 EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 119 DLEEERVVS 127
DL R VS
Sbjct: 141 DLARSREVS 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 234 bits (598), Expect = 1e-80
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
E + +LG G GKSALTV+F+ F+ +YDP +ED+Y + VD Q L ++DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DVPMVLVGNKCD 119
+ + Y+ F++VYS+ ++ +F+ S E + L K+T +P +L+GNK D
Sbjct: 80 DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 120 LEEERVVS 127
+ + R V+
Sbjct: 139 MAQYRQVT 146
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 230 bits (588), Expect = 2e-79
Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 2/126 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPT-IEDSYRKQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L F ++ ED+Y +++ VD ++ L + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 63 QFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++D ++ G F++V+S+T + +F+ + + ++ + D+P++LVGNK DL
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 122 EERVVS 127
R VS
Sbjct: 123 RSREVS 128
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 226 bits (577), Expect = 3e-77
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 1 MREYKIVVLGSGGVGKSALTVQF--VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILD- 57
Y++V++G GVGKS L F V + ED+Y + + VDG+ + +LD
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 58 --TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 115
G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++LVG
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 116 NKCDLEEERVVS 127
NK DL R VS
Sbjct: 153 NKSDLVRCREVS 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 217 bits (554), Expect = 6e-74
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
E K+ ++G+ GKSAL +++ G +V++ P ++K++ VDGQ +L I D G
Sbjct: 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGG 76
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
+ + + V+S+ + +F + + ++ ++ +VPMVLVG + +
Sbjct: 77 PPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131
Query: 121 EEE--RVVS 127
RV+
Sbjct: 132 SAANPRVID 140
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 216 bits (553), Expect = 1e-73
Identities = 46/132 (34%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 1 MREYKIVVLGSGGVGKSALTVQF--VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLE---I 55
M Y++V++G GVGKS L F V + ED+Y + + VDG+ + +
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
Query: 56 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 115
+ G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++LVG
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 116 NKCDLEEERVVS 127
NK DL R VS
Sbjct: 122 NKSDLVRXREVS 133
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 205 bits (523), Expect = 2e-69
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ E ++ VLG GKS+L +F+ G + + + T + Y+K++ VDGQ ++ I + AG
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDVPMVLVG--N 116
+ I V+S+ +++F +S L Q+ LR + + + LVG +
Sbjct: 64 AP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 117 KCDLEEERVVS 127
+ RVV
Sbjct: 119 RISASSPRVVG 129
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 162 bits (411), Expect = 7e-52
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ K V +G G VGK+ + + + F Y PT+ D++ V VDGQ L + DTAG
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E ++ +R L + F+L +S+ +++++ ++ LR + +VP+VLVG K DL
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDL 125
Query: 121 EEERVV 126
+++
Sbjct: 126 RDDKGY 131
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 135 bits (342), Expect = 1e-41
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
R K V++G G VGK++L V + + +Y PT D++ V VDG+ L++ DTAG
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
++F +R L N F+L +S+ + S+F ++S+ +R P++LVG + DL
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDL 136
Query: 121 EEERVV 126
E+ V
Sbjct: 137 REDVKV 142
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 130 bits (329), Expect = 2e-39
Identities = 34/126 (26%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--EDSYRKQVEVDGQQCMLEILDTAGT 61
YKI ++G GGVGK+ + + G F + Y+ T+ + ++ G + DTAG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E+ ++D+Y G IL + +T++ T +L+ ++ V ++ P+V+ NK D++
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK 130
Query: 122 EERVVS 127
+ +S
Sbjct: 131 NRQKIS 136
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 123 bits (310), Expect = 1e-36
Identities = 35/125 (28%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GG GK+ + + G F +KY T+ + + + + DTAG E
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK D+++
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 133
Query: 123 ERVVS 127
+V +
Sbjct: 134 RKVKA 138
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 121 bits (305), Expect = 4e-36
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K VV+G G VGK+ L + + F E+Y PT+ D Y V V G+Q +L + DTAG E +
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEE 123
+R L F++ +S+ ++F + E + +K+ +VP +L+G + DL ++
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQ--NVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 124 RVV 126
Sbjct: 138 PKT 140
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 121 bits (306), Expect = 4e-36
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
K+++LG GVGK++L Q+V F +Y TI D K+V VD + ++I DTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCD 119
+F ++ + + +LV+ +TA +TF L R++ L +D ++ P V++GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 120 LEEERVVS 127
LE +V +
Sbjct: 129 LENRQVAT 136
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 117 bits (296), Expect = 6e-35
Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K+++LG GGVGKS+L ++V F + TI + K +EVDG ++I DTAG E
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCD 119
+F ++R + + +L +S+ +F +LS+ +++ + VK+ + P V++GNK D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 120 LEEERVVS 127
+ ER VS
Sbjct: 128 I-SERQVS 134
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 116 bits (294), Expect = 1e-34
Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
K+VV+G+G VGKS++ ++ +GIF + Y TI D +Q++V+ + L + DTAG E
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F A+ Y + Q +LV+S T + +F +S RE+++ + D+P LV NK DL +
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTALVQNKIDLLD 123
Query: 123 ERVVS 127
+ +
Sbjct: 124 DSCIK 128
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 116 bits (294), Expect = 1e-34
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+RE K+ +LG GVGKS++ +FV+ F +PTI S+ K V+ + I DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E+F A+ +Y + I+VY IT + TF+ L + +RE LR + + + GNKC
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAIAGNKC 121
Query: 119 DLEEERVVS 127
DL + R V
Sbjct: 122 DLTDVREVM 130
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 116 bits (293), Expect = 2e-34
Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCM-LEILDTAGT 61
K+++LG GVGK++L ++V + ++Y TI D K+V VDG + +++ DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKC 118
E+F ++ + + +LVY +T S+F ++ R++ L V + P V++GNK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 119 DLEE-ERVVS 127
D EE +++VS
Sbjct: 129 DAEESKKIVS 138
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 116 bits (292), Expect = 3e-34
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
R K V +G G VGK+ L + + F Y PT+ D++ V V+G L + DTAG
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 65
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCD 119
E + +R L + FIL +S+ +++++ ++S + I +K VP+VLVG K D
Sbjct: 66 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIVLVGTKLD 123
Query: 120 LEEERVV 126
L +++
Sbjct: 124 LRDDKQF 130
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 116 bits (293), Expect = 3e-34
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+KI+V+G VGK+ LT +F G F ++ + TI D + V++DG++ +++ DTAG E
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 63 QF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
+F +M Y +N + VY +T ++F+ L E+ + +D+P +LVGNKCDL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 122 EERVVS 127
V
Sbjct: 141 SAIQVP 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 116 bits (293), Expect = 3e-34
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E + +R L F++ +S+ + ++F ++ +R + P++LVG K DL
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 146
Query: 121 EEERVV 126
+++
Sbjct: 147 RDDKDT 152
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 116 bits (292), Expect = 4e-34
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+RE K+ +LG GVGKS++ +FVQ F PTI S+ K V + I DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E+F ++ +Y + ++VY IT Q +F L ++E L+ +++ M + GNKC
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE--LKEHGPENIVMAIAGNKC 138
Query: 119 DLEEERVVS 127
DL + R V
Sbjct: 139 DLSDIREVP 147
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 116 bits (292), Expect = 5e-34
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+KIV++G+ GVGK+ L +F QG+F TI + K VE++G++ L+I DTAG E
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F ++ Y ++ IL Y IT + +F L + LRE + ++ V VLVGNK DL
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE--IEQYASNKVITVLVGNKIDLA 144
Query: 122 EERVVS 127
E R VS
Sbjct: 145 ERREVS 150
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 115 bits (290), Expect = 6e-34
Identities = 47/126 (37%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K+V+LG G VGK++L +++ + F +K+ T+ S+ K++ + G++ L I DTAG E
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F A+ +Y ++ G ILVY IT + +F + + ++E LR +++ + +VGNK DLE
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE--LRKMLGNEICLCIVGNKIDLE 124
Query: 122 EERVVS 127
+ER VS
Sbjct: 125 KERHVS 130
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 114 bits (289), Expect = 6e-34
Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+ ++K+V+LG VGKS+L ++FV+G F E + TI ++ + V +D EI DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E++ ++ +Y + Q I+VY IT + +F + ++E L+ + + ++ + L GNK
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE--LQRQASPNIVIALSGNKA 121
Query: 119 DLEEERVVS 127
DL +R V
Sbjct: 122 DLANKRAVD 130
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 115 bits (290), Expect = 8e-34
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGK+ L +F + F TI + + V + +I DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ A+ Y + G +LV+ +T T+ + L+E L + ++LVGNK DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE--LYDHAEATIVVMLVGNKSDLS 143
Query: 122 EERVVS 127
+ R V
Sbjct: 144 QAREVP 149
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 115 bits (290), Expect = 9e-34
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI D + +E+DG+ L+I DTAG E
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G I+VY +T Q +FN++ L+E + +++V +LVGNKCDL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNKLLVGNKCDLT 134
Query: 122 EERVVS 127
++VV
Sbjct: 135 TKKVVD 140
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 114 bits (288), Expect = 1e-33
Identities = 48/126 (38%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L QF + F+ TI + + +EV GQ+ L+I DTAG E
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F A+ Y + G ++VY IT +ST+N LS L + R + ++L+GNK DLE
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD--ARNLTNPNTVIILIGNKADLE 133
Query: 122 EERVVS 127
+R V+
Sbjct: 134 AQRDVT 139
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 115 bits (289), Expect = 1e-33
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ A+ Y + G +LVY I T+ ++ L+E LR ++ ++LVGNK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVIMLVGNKSDLR 147
Query: 122 EERVVS 127
R V
Sbjct: 148 HLRAVP 153
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 114 bits (288), Expect = 2e-33
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS L ++F + E Y TI D + +E+DG+ L+I DTAG E
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G I+VY +T Q +FN++ L+E + +++V +LVGNKCDL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNKLLVGNKCDLT 151
Query: 122 EERVVS 127
++VV
Sbjct: 152 TKKVVD 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 114 bits (288), Expect = 2e-33
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K +++G GVGKS L +QF F +D TI + + V +DG+Q L+I DTAG E
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
F ++ Y + G +LVY IT + TFN L+ L + R + ++ ++L+GNK DLE
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED--ARQHSSSNMVIMLIGNKSDLE 139
Query: 122 EERVVS 127
R V
Sbjct: 140 SRRDVK 145
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 114 bits (287), Expect = 2e-33
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y + GFIL+Y IT + +FN + D + ++ D+ ++LVGNKCD+E
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ--IKTYSWDNAQVILVGNKCDME 141
Query: 122 EERVVS 127
EERVV
Sbjct: 142 EERVVP 147
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 113 bits (286), Expect = 2e-33
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCM-LEILDTAGT 61
KIVVLG G GK++LT F Q F ++Y TI D + +++ + G + L+I D G
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCD 119
M D Y+ QG +LVY IT +F +L D + +V + + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 120 LEEERVVS 127
LE R +
Sbjct: 127 LEHMRTIK 134
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 114 bits (287), Expect = 2e-33
Identities = 44/126 (34%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G VGK+ + +F G F E+ TI D K +E+ G++ L+I DTAG E
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y ++ G IL Y IT +S+F + + + +R ++ +L+GNK DL
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED--VRKYAGSNIVQLLIGNKSDLS 147
Query: 122 EERVVS 127
E R VS
Sbjct: 148 ELREVS 153
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 113 bits (286), Expect = 3e-33
Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ VGK++ ++ F + T+ ++ K V ++ L+I DTAG E
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y + GF+L+Y I Q +F + D + ++ D+ ++LVGNKCDLE
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ--IKTYSWDNAQVILVGNKCDLE 140
Query: 122 EERVVS 127
+ERVV
Sbjct: 141 DERVVP 146
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 114 bits (287), Expect = 3e-33
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K +V+GS G GKS L QF++ F + + TI + + V V G+ L+I DTAG E
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F ++ Y + G +LVY IT++ T+N L+ L + R + ++ ++L GNK DL+
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD--ARTLASPNIVVILCGNKKDLD 143
Query: 122 EERVVS 127
ER V+
Sbjct: 144 PEREVT 149
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 113 bits (286), Expect = 3e-33
Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTE 62
+K +V+G+ G GKS L QF++ F + + TI + K + V G+ L+I DTAG E
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F ++ Y + G +LVY IT++ T+N L++ L + R+ + ++ ++L GNK DL+
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD--ARMLASQNIVIILCGNKKDLD 128
Query: 122 EERVVS 127
+R V+
Sbjct: 129 ADREVT 134
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 114 bits (287), Expect = 4e-33
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+KIV++G GVGKS L +F + F TI + + +E++G++ +I DTAG E
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ A+ Y + G ++VY I+ S++ + + L E LR D+V + L+GNK DL
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE--LRENADDNVAVGLIGNKSDLA 131
Query: 122 EERVVS 127
R V
Sbjct: 132 HLRAVP 137
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 113 bits (286), Expect = 5e-33
Identities = 41/129 (31%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI + K + ++ + L++ DTA
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E+F ++ Y+++ ++VY IT ++F + + + +R + DV ++LVGNK
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD--VRTERGSDVIIMLVGNKT 131
Query: 119 DLEEERVVS 127
DL ++R VS
Sbjct: 132 DLADKRQVS 140
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 113 bits (285), Expect = 5e-33
Identities = 42/126 (33%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+K+V++G GVGKS L +F + F + TI + + ++VDG+ +I DTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y + G +LVY I T+ ++ L+E LR ++ ++LVGNK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVIMLVGNKSDLR 123
Query: 122 EERVVS 127
R V
Sbjct: 124 HLRAVP 129
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 113 bits (285), Expect = 6e-33
Identities = 42/126 (33%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTE 62
+KI+++G+ VGK++ ++ F + T+ D K + + ++ L+I DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y + GFIL+Y IT + +FN + D + ++ D+ ++LVGNKCD+E
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ--IKTYSWDNAQVLLVGNKCDME 126
Query: 122 EERVVS 127
+ERVVS
Sbjct: 127 DERVVS 132
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 113 bits (284), Expect = 7e-33
Identities = 44/126 (34%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+++++GS GVGK++L +F F E T+ ++ K VE+ G++ L+I DTAG E
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F ++ Y ++ +G ILVY IT + TF+DL ++ + ++D ++LVGNK D E
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM--IDKYASEDAELLLVGNKLDCE 144
Query: 122 EERVVS 127
+R ++
Sbjct: 145 TDREIT 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 113 bits (284), Expect = 7e-33
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
M K+VV+G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 82
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPMVLVGNKCD 119
E + +R L + ++ +S+ + + ++ + ++ +VP++LV NK D
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK--HFCPNVPIILVANKKD 140
Query: 120 LEEERVV 126
L + V
Sbjct: 141 LRSDEHV 147
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 113 bits (285), Expect = 7e-33
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G+ GVGKS L ++F + Y TI ++ K VE+DG+ L+I DTAG E
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G I+VY +T Q +FN + L+E + T V +LVGNKCDL+
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE--IDRYATSTVLKLLVGNKCDLK 126
Query: 122 EERVVS 127
++RVV
Sbjct: 127 DKRVVE 132
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 112 bits (283), Expect = 8e-33
Identities = 40/126 (31%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGK+ + +F + F + TI ++ + +E+DG++ L+I DTAG E
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G +LVY IT + +F+++ + +R + + DV +++GNKCD+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN--IEEHASADVEKMILGNKCDVN 126
Query: 122 EERVVS 127
++R VS
Sbjct: 127 DKRQVS 132
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 112 bits (283), Expect = 9e-33
Identities = 35/124 (28%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ KIVV+G G VGK+ L + F +G Y PT+ +++ ++ ++ +L + DTAG
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 120
E++ +R L + +L +++ +++F+++S E ++ D VLVG K DL
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDL 139
Query: 121 EEER 124
++
Sbjct: 140 RKDG 143
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 111 bits (281), Expect = 1e-32
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
K+V+LG G GKS+L ++FV+ FVE + TI ++ + + V+ EI DTAG E
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
++ ++ +Y + I+V+ +T Q++F ++E L+ + ++ M L GNK DL
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE--LQAQGNPNMVMALAGNKSDLL 130
Query: 122 EERVVS 127
+ R V+
Sbjct: 131 DARKVT 136
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 111 bits (281), Expect = 1e-32
Identities = 42/129 (32%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+R++K+V LG VGK++L +F+ F Y TI + K + ++ + L++ DTA
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKC 118
G E+F ++ Y+++ ++VY IT ++F+ S + + +R + DV ++LVGNK
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD--VRTERGSDVIIMLVGNKT 129
Query: 119 DLEEERVVS 127
DL ++R VS
Sbjct: 130 DLSDKRQVS 138
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 111 bits (280), Expect = 2e-32
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
+K++++G GVGKS+L ++F F Y TI ++ + VE++G++ L+I DTAG E
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + G I+VY +T+ +F ++ +I + DDV +LVGNK D E
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPE 127
Query: 123 ERVVS 127
+VV
Sbjct: 128 RKVVE 132
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 111 bits (279), Expect = 3e-32
Identities = 46/125 (36%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
KI+++G GVGKS+L ++F F + TI ++ K + VDG + L I DTAG E
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+F + Y + QG ILVY +T + TF L + ++ +D+ +LVGNK D E
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134
Query: 123 ERVVS 127
R V
Sbjct: 135 NREVD 139
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 111 bits (279), Expect = 7e-32
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCM---------- 52
K++ LG GVGK+ ++ F K+ T+ D K+V + Q
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 112
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +V
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 113 LVGNKCDLEEERVVS 127
L+GNK DL ++R V+
Sbjct: 146 LIGNKADLPDQREVN 160
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 108 bits (272), Expect = 2e-31
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L+I DTAG E
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G ILVY IT + TF ++ + + D+ ++LVGNK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQLLLVGNKSDM- 120
Query: 122 EERVVS 127
E RVV+
Sbjct: 121 ETRVVT 126
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 108 bits (273), Expect = 3e-31
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 11/135 (8%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-----------EDSYRKQVEVDGQQCM 52
K + LG GVGK+++ Q+ G F K+ T+ + GQ+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 53 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 112
L++ DTAG E+F ++ + ++ GF+L++ +T + +F ++ + Q+ +++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 113 LVGNKCDLEEERVVS 127
L GNK DLE++R V
Sbjct: 132 LCGNKSDLEDQRAVK 146
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 108 bits (271), Expect = 4e-31
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 5/127 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGT 61
+K++++G GVGK+ L V+F G F+ + T+ +R K ++VDG + L++ DTAG
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDL 120
E+F ++ Y ++ +L+Y +T +++F+++ L E + DV ++L+GNK D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE--IHEYAQHDVALMLLGNKVDS 128
Query: 121 EEERVVS 127
ERVV
Sbjct: 129 AHERVVK 135
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 108 bits (273), Expect = 5e-31
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
KI+++G GVGKS L V+FV+ F + TI ++ K V+++G++ L++ DTAG E
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLE 121
+F + Y + G ILVY +T + TF ++ + + D+ ++LVGNK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT--VNEHANDEAQLLLVGNKSDM- 137
Query: 122 EERVVS 127
E RVV+
Sbjct: 138 ETRVVT 143
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 107 bits (270), Expect = 1e-30
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 62
YKIV+ G VGKS+ ++ + F E T+ ++ K + VDG++ +L++ DTAG E
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 63 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDL- 120
+F ++ Y + G +L+Y +T + +F ++ + + + + VP++LVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM--IEDAAHETVPIMLVGNKADIR 146
Query: 121 -----EEERVVS 127
E ++ V
Sbjct: 147 DTAATEGQKCVP 158
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 107 bits (270), Expect = 1e-30
Identities = 37/127 (29%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+R K+V++G GG GK++L + F G F E Y PT+ + Y ++V G+ L I DTAG
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPMVLVGNKCD 119
+ + +R L+ + +L + +T+ ++F+++ + ++ VP+++VG K D
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH--FCKKVPIIVVGCKTD 149
Query: 120 LEEERVV 126
L +++ +
Sbjct: 150 LRKDKSL 156
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 107 bits (267), Expect = 7e-30
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 22 QFVQGIFVEKYDPTIEDSYRKQVEVD----GQQCMLEILDTAGTEQFTAMRDLYMKNGQ- 76
+F+ + + T Y K+ ++ M D G EQ M +G+
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQ--DFEQKQMPDGKL 161
Query: 77 ---GFILVYSIT--AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127
GF+L ++ F+D + P+V+V KCD ER +
Sbjct: 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR 217
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 105 bits (263), Expect = 1e-29
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 4 YKIVVLGSGGVGKSALTVQFV--QGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEI--LDT 58
K+ V+G VGKSAL F F++ Y T + V + +E+ LDT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 59 AGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDVPMVLVGN 116
AG++ + Y ILV+ +++ +F E + R + VLV N
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140
Query: 117 KCDLEEER-VVS 127
K DL +R V
Sbjct: 141 KTDLPPQRHQVR 152
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 99.0 bits (247), Expect = 2e-27
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KIVV+G GK+AL F + F E Y PT+ ++Y E+D Q+ L + DT+G+ +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDT-DDVPMVLVGNKCDLE 121
+R L + ++ + I+ T + + E +++ + M+LVG K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE----IQEFCPNTKMLLVGCKSDLR 124
Query: 122 EERVV 126
+
Sbjct: 125 TDVST 129
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 99.6 bits (248), Expect = 2e-27
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ K+V++G GK+A+ + + E Y PT+ ++Y +E + Q+ L + DT+G
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 84
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPMVLVGNKCD 119
+ + +R L + +L + I+ T + R +IL ++L+G K D
Sbjct: 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTD 142
Query: 120 LEEERVV 126
L +
Sbjct: 143 LRTDLST 149
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 97.9 bits (244), Expect = 6e-27
Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
K+V++G G GK+ L + F + F E Y PT+ ++Y +EVDG+Q L + DTAG E +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPMVLVGNKCDLEEE 123
+R L + ++ +SI + + ++ + ++ +VP++LVGNK DL ++
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD 144
Query: 124 RVV 126
Sbjct: 145 EHT 147
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 96.4 bits (240), Expect = 3e-26
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
KIVV+G GK+AL F + F E Y PT+ ++Y E+D Q+ L + DT+G+ +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPMVLVGNKCDLEEE 123
+R L + ++ + I+ T + + + +I + M+LVG K DL +
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 147
Query: 124 RVV 126
Sbjct: 148 VST 150
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 94.5 bits (235), Expect = 7e-26
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTA 59
+ K+V+LG VGKS++ ++FV F E +PTI ++ ++V ++ EI DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 60 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 119
G E+F ++ Y +N Q ++VY +T +F ++ L + + D+ + LVGNK D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKID 119
Query: 120 LEEE 123
+E
Sbjct: 120 XLQE 123
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 94.5 bits (235), Expect = 2e-25
Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 44/163 (26%)
Query: 4 YKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDG-------------- 48
YK V+LG VGKS++ ++ + F E + TI S+ V ++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 49 -----------------------QQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT 85
+I DTAG E++ ++ LY + I+V+ I+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 86 AQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERVVS 127
+T + + + +K + + ++LV NK D + V
Sbjct: 128 NSNTLDRAKTWVNQ----LKISSNYIIILVANKIDK-NKFQVD 165
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 93.7 bits (233), Expect = 2e-25
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 62
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCD 119
E + +R L ++ +S+ + ++F N + ++ + P++LVG K D
Sbjct: 63 QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLD 120
Query: 120 LEEERVV 126
L +++
Sbjct: 121 LRDDKDT 127
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 93.2 bits (232), Expect = 3e-25
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEK--YDPTIE-DSYRKQVEVDGQQC---MLEIL 56
K++++G+ G GK+ L Q ++ + T+ D +++ ++ +L +
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 57 DTAGTEQFTAMRDLYMKNGQGFILVYSIT-AQSTFNDLSDLREQILRVKDTDDVPMVLVG 115
D AG E+F + +M ++ VY ++ Q+ + + I P++LVG
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVG 119
Query: 116 NKCDLEEERVVS 127
D+ +E+
Sbjct: 120 THLDVSDEKQRK 131
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 88.5 bits (219), Expect = 7e-22
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI---------EDSYRKQVEVDGQQC 51
++E K+ ++G G GK++L Q + F K T + + + + ++C
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVP 110
+ D G E A +M ++L+ S + L + + P
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKY------GGKSP 152
Query: 111 MVLVGNKCDLEEERVVS 127
+++V NK D +
Sbjct: 153 VIVVMNKIDENPSYNIE 169
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 70.8 bits (173), Expect = 8e-16
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
K VV+G G VGK+ L + + F +Y PT+ D+Y V VDG+ L + DTAG
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTD-DVPMVLVGNK 117
E + +R L F++ +S+ + ++F+ + E V+ + P++LVG K
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE----VRHHCPNTPIILVGTK 268
Query: 118 CDLEEERVV 126
DL +++
Sbjct: 269 LDLRDDKDT 277
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 55.1 bits (133), Expect = 1e-10
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 18/137 (13%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKY-----------DPTIE-DSYRKQVE-VDGQ 49
+KIV G G GK+ ++++ E + T+ D + V G
Sbjct: 14 NFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK----D 105
+ + G + A R L ++ G + V + +R +
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132
Query: 106 TDDVPMVLVGNKCDLEE 122
DDVP+V+ NK DL +
Sbjct: 133 LDDVPIVIQVNKRDLPD 149
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 41.1 bits (96), Expect = 2e-05
Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DGQQCMLEILDTAGTE 62
K++++G G GKS++ + + + + + L + D G +
Sbjct: 5 KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 63 QF-----TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGN 116
F T +D + Q I V+ + + D+ + + +++ D + ++ +
Sbjct: 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 117 KCDLEEE 123
K DL +
Sbjct: 124 KMDLVQL 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-05
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 34/125 (27%)
Query: 1 MREYKIVVL-GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV------EVDGQQCML 53
+R K V++ G G GK+ + + ++ ++ + + +L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 54 EILDTAGTEQFTAMRDLYMKNGQGFI--LVYSITAQSTFNDLSDLREQILRVKDT----- 106
E+L L + + +S + + + ++L+ K
Sbjct: 200 EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 107 --DDV 109
+V
Sbjct: 249 VLLNV 253
Score = 31.0 bits (69), Expect = 0.11
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 56 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV 109
+D E +D+ F+ D+ D+ + IL ++ D +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV------DNFDCKDVQDMPKSILSKEEIDHI 54
Score = 29.8 bits (66), Expect = 0.21
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 38/111 (34%)
Query: 20 TVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79
T + + +K IE S L +L+ A E R ++ +
Sbjct: 343 TWDNWKHVNCDKLTTIIESS-------------LNVLEPA--E----YRKMFDR------ 377
Query: 80 LVYSITAQSTFNDLSDLREQILRV----KDTDDVPMVLVG--NKCDLEEER 124
S+ F + + +L + DV +V+ +E++
Sbjct: 378 --LSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 38.8 bits (91), Expect = 1e-04
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + D G
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINN--TRFLMWDIGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130
Query: 122 E 122
E
Sbjct: 131 E 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 38.8 bits (90), Expect = 1e-04
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 10/129 (7%)
Query: 2 REYKIVVLGSGGVGK-SALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDGQQCMLEILDT 58
+ +I+++G GK S V F + E + T Y+ + +I D
Sbjct: 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN-FQIWDF 76
Query: 59 AGTEQF---TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPMVLV 114
G F T ++ + I V L+ L + + K D+ +
Sbjct: 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYM-EALTRLHITVSKAYKVNPDMNFEVF 135
Query: 115 GNKCDLEEE 123
+K D +
Sbjct: 136 IHKVDGLSD 144
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.0 bits (89), Expect = 2e-04
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
++ +I+++G GK+ + + G V PTI + VE + D G
Sbjct: 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKN--ICFTVWDVGGQ 83
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
++ + Y +N QG I V + + +D +++L+ + D +++ NK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 122 E 122
Sbjct: 144 N 144
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.0 bits (86), Expect = 6e-04
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ ++ +G GK+ L V+ + G + + +I DS + + L ++D G
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 62 EQF-TAMRDLYMKNGQGFILVY-SITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNK 117
E + D + + + + V S Q D+++ Q+L + +++ NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 118 CDL 120
D+
Sbjct: 125 QDI 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 6 IVVLGSGGV-GKSALTVQFVQG-----IFVEKYDPTIEDSY-RKQ 43
I+ G GG G LT + G I D +D Y KQ
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 35.2 bits (82), Expect = 0.002
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
E ++ ++G GK+ G F E PT+ +++ +++ D G
Sbjct: 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV-GFNMRKITKGN--VTIKLWDIGGQ 77
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
+F +M + Y + + + Q + +L +P++++GNK DL
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 34.9 bits (81), Expect = 0.002
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E+K++++G GK+ + QF V PTI S +++ ++ + D G
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINN--TRFLMWDIGGQ 75
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
E + + Y N + I+V T + + + ++L +D +++ NK D++
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135
Query: 122 E 122
E
Sbjct: 136 E 136
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 34.5 bits (80), Expect = 0.003
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG G GK+ + + G V PTI + + + L + D G
Sbjct: 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-PTI-GFNVETLSYKNLK--LNVWDLGGQ 72
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
Y + I V T + + S +L+ ++ D +++ NK D
Sbjct: 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 34.8 bits (80), Expect = 0.004
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 5 KIVVLGSGGVGKSALTVQFVQG--IF------VEKYDPTIEDSYRKQVEVDGQQCMLEIL 56
++VLG GGVGKS+ + V + + G + I+
Sbjct: 38 TVLVLGKGGVGKSST------VNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INII 89
Query: 57 DTAG 60
DT G
Sbjct: 90 DTPG 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 33.8 bits (78), Expect = 0.007
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
RE ++++LG GK+ + +F G V+ PT+ K +E G L I D G
Sbjct: 17 RELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTL-GFNIKTLEHRG--FKLNIWDVGGQ 72
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
+ + Y ++ G I V + D + +L + +++ NK DL
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 33.9 bits (77), Expect = 0.009
Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 11/127 (8%)
Query: 3 EYKIVVLGSGGVGKS----ALTVQFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEIL 56
+ V G G GKS L + G + + + +
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPN---VVFW 125
Query: 57 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 116
D G D Y++ + + + I +T I + V
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMMKKEFYFVRT 183
Query: 117 KCDLEEE 123
K D +
Sbjct: 184 KVDSDIT 190
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.4 bits (74), Expect = 0.021
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ I++ G GK++L + E D + ++D G
Sbjct: 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 101
Query: 62 EQFTAMRDLYMKNGQGFI--LVY---SITAQSTFNDLSDLREQIL---RVKDTDDVPMVL 113
+ Y+K F+ L++ S ++ IL + + +++
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 161
Query: 114 VGNKCDL 120
NK +L
Sbjct: 162 ACNKSEL 168
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 31.8 bits (73), Expect = 0.029
Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
RE +I++LG G GK+ + + G V PTI + V + ++ D G
Sbjct: 6 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTI-GFNVETVTYKNLK--FQVWDLGGL 61
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
Y N I V + +L ++ +V+ NK D+E
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 31.8 bits (73), Expect = 0.030
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
R+ ++++LG GK+++ + G V PT+ + ++ E+ D G
Sbjct: 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV-GVNLETLQYKN--ISFEVWDLGGQ 76
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
Y + I V T + +L + +++ NK DL
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136
Query: 122 E 122
+
Sbjct: 137 D 137
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 32.0 bits (72), Expect = 0.037
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+ K+++LG+G GKS + Q + +F +D SY + + Q + + D
Sbjct: 7 IHIRKLLLLGAGESGKSTIFKQI-KLLFQTGFDEGELKSYVPVIHANVYQTIKLLHD--- 62
Query: 61 TEQFTAMRDLYMKNGQGF 78
++
Sbjct: 63 -----GTKEFAQNETDSA 75
Score = 25.5 bits (55), Expect = 5.9
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 24/123 (19%)
Query: 27 IFVEKYDPTIEDSYRKQVEVDG--------------QQCMLEILDTAGTEQFTAMRDLYM 72
+ Y PT ED +V G + + D G
Sbjct: 145 LSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLF 204
Query: 73 KNGQGFILVYSIT--AQSTFNDLSDLR--------EQILRVKDTDDVPMVLVGNKCDLEE 122
+ I +I+ Q+ F D R + +L+ + +L NK D+ E
Sbjct: 205 EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 264
Query: 123 ERV 125
++V
Sbjct: 265 KKV 267
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 31.5 bits (72), Expect = 0.038
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 43 QVEVDGQQCMLEILDTAGTEQFTAMR 68
QV V+ + + LDT G E FT MR
Sbjct: 49 QVTVNDK--KITFLDTPGHEAFTTMR 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.1 bits (73), Expect = 0.044
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 6 IVVLGSGGVGKSALTVQFVQ 25
+ + G G GKS L + V+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVR 169
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 31.0 bits (71), Expect = 0.050
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 5 KIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 64
+I+++G GK+ + + G V PTI + VE + D G ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKN--ISFTVWDVGGQDKI 57
Query: 65 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 122
+ Y +N QG I V + N+ + ++L + D +++ NK DL
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 31.5 bits (71), Expect = 0.050
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 3 EYKIVVLGSGGVGKSAL--TVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTA 59
I+V+G GGVGKS+ ++ + + + + G L I+DT
Sbjct: 39 SLTILVMGKGGVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTP 95
Query: 60 G 60
G
Sbjct: 96 G 96
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 30.9 bits (70), Expect = 0.073
Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ I++ G GK++L + E D + ++D G
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 65
Query: 62 EQFTAMRDLYMKNGQGFI--LVY---SITAQSTFNDLSDLREQIL---RVKDTDDVPMVL 113
+ Y+K F+ L++ S ++ IL + + +++
Sbjct: 66 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125
Query: 114 VGNKCDL 120
NK +L
Sbjct: 126 ACNKSEL 132
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 30.4 bits (68), Expect = 0.14
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 14/126 (11%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDP----TIEDSYRKQVEVDGQQCMLEILDTAGT 61
++++G GKS++ + P +E + +E L +++ G
Sbjct: 2 VLLMGVRRCGKSSI-----CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQ 56
Query: 62 EQFTAM---RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD-DVPMVLVGNK 117
+ + K+ + V + N +++L I + + + ++ +K
Sbjct: 57 LNYFEPSYDSERLFKSVGALVYVIDSQDEY-INAITNLAMIIEYAYKVNPSINIEVLIHK 115
Query: 118 CDLEEE 123
D E
Sbjct: 116 VDGLSE 121
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome,
initiation of protein synthesis, cryo-eletron
microscopy, translation/RNA complex; 13.80A
{Escherichia coli}
Length = 501
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 43 QVEVDGQQCMLEILDTAGTEQFTAMR 68
VE + M+ LDT G FT+MR
Sbjct: 45 HVETENG--MITFLDTPGHAAFTSMR 68
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 29.9 bits (68), Expect = 0.15
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+E +I++LG GK+ L Q PT K V+ G L + D G
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQ-GFNIKSVQSQG--FKLNVWDIGGQ 70
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
+ Y +N I V + F + ++L + VP+++ NK DL
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.6 bits (66), Expect = 0.24
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIE--DSYRKQVEVDGQQCMLEILD 57
+ +IV++G G GKSA + + +F ++ + L ++D
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVD 84
Query: 58 TAG 60
T G
Sbjct: 85 TPG 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.2 bits (66), Expect = 0.27
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 12/125 (9%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTI----EDSYRKQVEVDGQQCMLEILD 57
+ K+V LG GK+ L + + PT+ E E+ D
Sbjct: 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSE-------ELTIAGMTFTTFD 75
Query: 58 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 117
G Q + Y+ G + + + + + ++ + +VP++++GNK
Sbjct: 76 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNK 135
Query: 118 CDLEE 122
D E
Sbjct: 136 IDRPE 140
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB:
2bcj_Q* 2rgn_A* 3ah8_A*
Length = 327
Score = 28.9 bits (64), Expect = 0.45
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
RE K+++LG+G GKS Q + I Y + + K V + M ++ T
Sbjct: 6 RELKLLLLGTGESGKSTFIKQM-RIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDT 64
Query: 62 EQFTAMRDLYMKNGQ 76
+ + + Q
Sbjct: 65 LKIPYKYEHNKAHAQ 79
Score = 28.5 bits (63), Expect = 0.57
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 18/120 (15%)
Query: 27 IFVEKYDPTIEDSYRKQVEVDG--------QQCMLEILDTAGTEQFTAMRDLYMKNGQG- 77
+ Y PT +D R +V G Q + ++D G +N
Sbjct: 135 VADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSI 194
Query: 78 -FILVYSITAQSTFNDLSDLR--------EQILRVKDTDDVPMVLVGNKCDLEEERVVSG 128
F++ S Q ++ R I+ + ++L NK DL EE+++
Sbjct: 195 MFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS 254
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 28.3 bits (64), Expect = 0.58
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 22/85 (25%)
Query: 53 LEILDTAGTEQFTAMRD--------------LYMKNGQGFILVYSITAQSTFNDLSDLRE 98
L I+DTAG +R+ ++ + + T + E
Sbjct: 54 LHIIDTAG------LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPE 107
Query: 99 QILRVKDTDDVPMVLVGNKCDLEEE 123
I R+ +P+ +V NK D+ E
Sbjct: 108 FIARL--PAKLPITVVRNKADITGE 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 28.3 bits (64), Expect = 0.72
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 29/103 (28%)
Query: 35 TIEDSYRKQVEVDGQQCMLEILDTAG---TEQFTAMRDL-----------YMKNGQGFIL 80
IE+ D M + DTAG + M +
Sbjct: 271 YIEE----CFIHDK--TMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILY 318
Query: 81 VYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ + + ++L+++RE + V NK D
Sbjct: 319 LLDLGTERLDDELTEIRELK---AAHPAAKFLTVANKLDRAAN 358
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 27.8 bits (62), Expect = 0.95
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 5 KIVVLGSGGVGKSALT 20
K+ V G GGVGK+ +
Sbjct: 2 KLAVAGKGGVGKTTVA 17
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 27.7 bits (61), Expect = 1.0
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 5 KIVVLGSGGVGKSAL 19
+ V+LG G VG++ +
Sbjct: 15 RFVILGFGCVGQALM 29
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.6 bits (62), Expect = 1.0
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
+E ++ LG GK+ + + + PTI ++ + + D +G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI-GFSIEKFKSSS--LSFTVFDMSG 76
Query: 61 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKC 118
++ + + Y K GQ I V + + + + +L D +P++ NK
Sbjct: 77 QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136
Query: 119 DLEE 122
DL +
Sbjct: 137 DLRD 140
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 27.7 bits (61), Expect = 1.0
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 3 EYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIEDSY--RKQVEVDGQQCMLEILDTA 59
+++++G G GKSA + Q F + T D +E++DT
Sbjct: 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTP 78
Query: 60 G 60
Sbjct: 79 D 79
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 27.8 bits (61), Expect = 1.1
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
RE K+++LG+G GKS + Q + I Y Y+ V + Q ++ I+ G
Sbjct: 31 REVKLLLLGAGESGKSTIVKQM-KIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGR 89
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFN 91
+ + + ++ +
Sbjct: 90 LKIDFGDAARADDARQLFVLAGAAEEGFMT 119
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 27.2 bits (61), Expect = 1.3
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 96 LREQILRVKDT------DDVPMVLVGNKCDLEEE 123
L E + + P+++ NK D
Sbjct: 274 LIETLQSSFEILREIGVSGKPILVTLNKIDKING 307
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 27.6 bits (60), Expect = 1.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 5 KIVVLGSGGVGKSAL 19
+++LGSG V + L
Sbjct: 5 SVLMLGSGFVTRPTL 19
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 26.7 bits (59), Expect = 1.7
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 4 YKIVVLGSGGVGKSA 18
+ I V+G+G +G+
Sbjct: 6 WNICVVGAGKIGQMI 20
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.1 bits (59), Expect = 1.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 5 KIVVLGSGGVGKSAL 19
+++LGSG V + +
Sbjct: 25 NVLLLGSGFVAQPVI 39
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.8 bits (59), Expect = 2.1
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 71 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
Y +N QG I V + N+ + ++L + D +++ NK DL
Sbjct: 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 26.9 bits (59), Expect = 2.2
Identities = 5/14 (35%), Positives = 12/14 (85%)
Query: 5 KIVVLGSGGVGKSA 18
K+++LG+G +G++
Sbjct: 18 KVLILGAGNIGRAI 31
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 26.8 bits (59), Expect = 2.4
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVE 30
+V++G+ G GKS L++ +E
Sbjct: 43 LVLMGATGTGKSRLSIDLAAHFPLE 67
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 26.6 bits (58), Expect = 2.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQ 25
M +V +G+ G GK+ LT +F +
Sbjct: 12 MASMIVVFVGTAGSGKTTLTGEFGR 36
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 26.4 bits (58), Expect = 2.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 6 IVVLGSGGVGKSALTV 21
I V G GGVGK+ +
Sbjct: 21 IFVGGKGGVGKTTSSC 36
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 26.4 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 4 YKIVVL-GSGGVGKSALTV 21
+I V+ G GGVGKS +T
Sbjct: 19 SRIAVMSGKGGVGKSTVTA 37
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 26.4 bits (59), Expect = 2.9
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 30/91 (32%)
Query: 5 KIVVLGSGGVGK-----------------SALTVQFVQGIFVEKYDPTIEDSYRKQV--E 45
+++++G G V ++L+ V QV +
Sbjct: 145 EVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGV---RHLYR--EPSQVTQK 199
Query: 46 VDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 76
I D ++ A+ NG
Sbjct: 200 YFA------IFDAVNSQNAAALVPSLKANGH 224
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 26.3 bits (57), Expect = 3.0
Identities = 12/54 (22%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 3 EYKIVVLGSGGVGKSAL--TVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLE 54
E+ ++V+G G+GKS L ++ F+ ++ E+ + + V+++ +E
Sbjct: 18 EFTLMVVGESGLGKSTLINSL-FLTDLYPERVISGAAEKIERTVQIEASTVEIE 70
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.2 bits (57), Expect = 3.1
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 3 EYKIVVLGSGGVGKSALTVQFV-QGIFVEKYDPTIE--DSYRKQVEVDGQQCMLEILDTA 59
E +I+++G G GKSA + + F K + Q ++ + I+DT
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTP 79
Query: 60 G 60
Sbjct: 80 D 80
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 26.3 bits (59), Expect = 3.1
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 5 KIVVLGSGGVGKSAL 19
K++V GSGG+ K+ +
Sbjct: 121 KVIVHGSGGMAKAVV 135
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 26.3 bits (57), Expect = 3.2
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 18/120 (15%)
Query: 27 IFVEKYDPTIEDSYRKQV--------EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 78
I + Y P+ +D R +V + + + D G +
Sbjct: 185 IKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAI 244
Query: 79 ILVYSITAQ-------STFNDLSD---LREQILRVKDTDDVPMVLVGNKCDLEEERVVSG 128
I V + ++ + N L + L + I + + ++L NK DL E+V++G
Sbjct: 245 IFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAG 304
Score = 26.3 bits (57), Expect = 3.8
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV 44
+++++LG+G GKS + Q + + V ++ + +
Sbjct: 38 RATHRLLLLGAGESGKSTIVKQM-RILHVNGFNGEGGEEDPQAA 80
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 26.2 bits (57), Expect = 3.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 57
R KI++LG+G GKS Q + I + +D + +R + + + M ++D
Sbjct: 31 ARLVKILLLGAGESGKSTFLKQM-RIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVD 86
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 26.2 bits (57), Expect = 3.4
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 5 KIVVLGSGGVGKSALTVQFVQ 25
KI VLG+G VG +
Sbjct: 21 KIAVLGTGTVG-RTMAGALAD 40
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 26.0 bits (57), Expect = 3.5
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 37/159 (23%)
Query: 6 IVVLGSGGVGKSALTVQFVQ-----------------------------GIFVEKYDPT- 35
+++ G G GK+ QF+ G EKY+
Sbjct: 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEG 92
Query: 36 ---IEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA-QSTFN 91
I D V + ++ + + + +++ SI +
Sbjct: 93 KIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE 152
Query: 92 DLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVVS 127
+ +RE +L++ V +L D + ++
Sbjct: 153 EERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSR 191
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP;
1.80A {Debaryomyces hansenii}
Length = 348
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 6 IVVLGSGGVGKSALTV 21
I V G GGVGK+ +
Sbjct: 21 IFVGGKGGVGKTTTSS 36
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 26.3 bits (59), Expect = 3.6
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 93 LSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+ ++I + P++LV NK DL E+
Sbjct: 317 WTTGDQEIY--EQVKHRPLILVMNKIDLVEK 345
>3od9_A Putative exported protein; beta sandwich, C-terminal helix,
hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Length = 135
Score = 25.6 bits (55), Expect = 4.3
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 20 TVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFI 79
QF+ G + + D +I++ + D Q ++ ++++AG+ + + + +G
Sbjct: 46 LDQFIDGKVLPR-DGSIKELKLLDLNGDKQPELIVVVESAGSGSYLSADAFTLNPQEGLD 104
Query: 80 LVYSITAQSTFND 92
+ + D
Sbjct: 105 SFNHVEGLAPNED 117
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 25.9 bits (57), Expect = 4.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 6 IVVLGSGGVGKS 17
I V G GGVGK+
Sbjct: 22 IFVGGKGGVGKT 33
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 25.7 bits (57), Expect = 4.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 6 IVVLGSGGVGKSALTVQ 22
IV+ G+ GVGKS L++Q
Sbjct: 5 IVIAGTTGVGKSQLSIQ 21
>3igf_A ALL4481 protein; two-domained protein consisting of the
N-terminal alpha-beta the C-terminal all beta domain.,
structural genomics; 2.00A {Nostoc SP}
Length = 374
Score = 26.0 bits (57), Expect = 4.6
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 6 IVVLGSGGVGKSAL 19
+ LG GV ++ +
Sbjct: 5 LTFLGKSGVARTKI 18
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA
ATPase, ATP binding site, hydro; HET: ADP; 2.15A
{Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB:
1f48_A* 1ii0_A* 1ii9_A*
Length = 589
Score = 26.0 bits (57), Expect = 4.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 6 IVVLGSGGVGKS 17
+ G GGVGK+
Sbjct: 11 LFFTGKGGVGKT 22
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 25.6 bits (56), Expect = 5.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 6 IVVLGSGGVGKS 17
+ + G GGVGK+
Sbjct: 17 VFIGGKGGVGKT 28
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 25.9 bits (56), Expect = 5.1
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIF------------VEKYDPTIE-DSYRKQVEVDGQ 49
E+ ++V+G G+GKS + +F + T++ + + ++ G
Sbjct: 8 EFTLMVVGESGLGKST----LINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 63
Query: 50 QCMLEILDTAGTE 62
Q +L I+DT G
Sbjct: 64 QLLLTIVDTPGFG 76
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 25.6 bits (56), Expect = 5.2
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 78 FILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
+I S + L E++ + D+P ++V NK D+ +E
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVH--GEFKDLPFLVVINKIDVADE 295
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 25.7 bits (56), Expect = 5.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 110 PMVLVGNKCDL 120
P++LVGNK DL
Sbjct: 100 PILLVGNKADL 110
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 25.8 bits (57), Expect = 5.6
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 35 TIEDSYRKQVEVDGQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGF-----ILVYSITAQS 88
T D K +E+ ++DT G + + L ++ + + +
Sbjct: 68 TTTDPVYKSMELHPIGPVT--LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP 125
Query: 89 TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 124
T + D+ ++ +P V+V NK D+ E+
Sbjct: 126 TPYED-DVVNLFKEME----IPFVVVVNKIDVLGEK 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 25.6 bits (57), Expect = 5.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 56 LDTAGTEQFTAMR 68
LDT G F+AMR
Sbjct: 57 LDTPGHAAFSAMR 69
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 25.4 bits (55), Expect = 5.8
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDG 48
++++GS G GKS + + Q I EKY + + D
Sbjct: 27 VILVGSPGSGKSTIAEELCQII-NEKYHTFLSEHPNVIEVNDR 68
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway,
isoprene biosynthesis, metal- NADP, oxidoreductase;
HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Length = 376
Score = 25.5 bits (57), Expect = 6.1
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 1 MREYKIVVLGS-GGVGKSALTV 21
M E +V+LG+ G +G L V
Sbjct: 1 MEERTLVILGATGSIGTQTLDV 22
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural
genomics, joint CENT structural genomics, JCSG; 2.00A
{Staphylococcus epidermidis}
Length = 332
Score = 25.3 bits (55), Expect = 6.4
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 1 MREYKIVVLGSGGVGKSAL 19
M++ +V++G GG G S L
Sbjct: 2 MKQMNVVLIG-GGTGLSVL 19
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 25.3 bits (55), Expect = 6.6
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 6 IVVLGSGGVGKSALTVQFVQGIFVEKYDPTI---EDSYRKQVEVDG 48
+L G GKS + +++ I E Y++ G
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLG 83
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase;
HET: GDP; 2.00A {Methanothermobacterthermautotrophicus}
SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A*
1g7t_A*
Length = 594
Score = 25.3 bits (56), Expect = 6.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 55 ILDTAGTEQFTAMR 68
+DT G E FT +R
Sbjct: 74 FIDTPGHEAFTTLR 87
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 25.2 bits (56), Expect = 7.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVE 30
M+E + ++G VGK+ +V + + E
Sbjct: 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGE 30
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 25.2 bits (56), Expect = 7.5
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 35 TIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDL-----------YMKNGQGFILVYS 83
I + ++ + G + I+DTAG T DL ++ + V
Sbjct: 281 VISE----EIVIRG--ILFRIVDTAGVRSETN--DLVERLGIERTLQEIEKADIVLFVLD 332
Query: 84 ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 123
++ D +IL + + ++V NK D+ E+
Sbjct: 333 ASSPLDEED-----RKIL--ERIKNKRYLVVINKVDVVEK 365
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 24.8 bits (55), Expect = 7.5
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 4/120 (3%)
Query: 2 REYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT 61
+ K++ LG GK+ L PT +++ + D G
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTW-HPTSEELAIGN--IKFTTFDLGGH 77
Query: 62 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 121
Q + Y G + + F++ + + + + DVP V++GNK D
Sbjct: 78 IQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 25.2 bits (56), Expect = 8.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 5 KIVVLGSGGVGKSAL 19
VVLGSGG ++ L
Sbjct: 124 ICVVLGSGGAARAVL 138
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 25.3 bits (55), Expect = 8.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 6 IVVLGSGGVGKS 17
I V G GGVGK+
Sbjct: 19 IFVGGKGGVGKT 30
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 24.9 bits (55), Expect = 8.4
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 5 KIVVLGSGGVGKSA 18
K+ + G+GG +
Sbjct: 156 KMTICGAGGAATAI 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 25.0 bits (55), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 13 GVGKSALTVQFVQGIFVEKYDP-TIED 38
G G S +TV + I +KY P TI++
Sbjct: 1 GPGGSMITVNEKEHILEQKYRPSTIDE 27
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.1 bits (54), Expect = 9.0
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLE 54
+ I+ +G G+GKS + +F K++ + V++ L+
Sbjct: 42 CFNILCVGETGLGKST----LMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQ 89
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex,
immune system; HET: PTR; NMR {Homo sapiens} SCOP:
d.93.1.1 PDB: 1ka7_A
Length = 128
Score = 24.7 bits (54), Expect = 9.0
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 70 LYMKNGQGFILVYSITAQSTFNDLSDL 96
+ G + F + +L
Sbjct: 57 SQTETGSWSAETAPGVHKRYFRKIKNL 83
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 24.9 bits (54), Expect = 9.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 110 PMVLVGNKCDL 120
++LVGNK DL
Sbjct: 98 KVLLVGNKADL 108
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 24.8 bits (55), Expect = 10.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 5 KIVVLGSGGVGKSA 18
+V +G+GGVG +
Sbjct: 129 SVVQVGAGGVGNAV 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.380
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,986,683
Number of extensions: 110578
Number of successful extensions: 882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 216
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)