Query psy7843
Match_columns 255
No_of_seqs 238 out of 3190
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:16:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 99.9 6.3E-25 1.4E-29 193.3 15.0 128 120-252 2-129 (209)
2 COG2518 Pcm Protein-L-isoaspar 99.9 2.1E-23 4.5E-28 183.3 12.9 118 121-244 4-121 (209)
3 PRK13942 protein-L-isoaspartat 99.9 7.2E-23 1.6E-27 179.5 15.3 129 119-252 5-133 (212)
4 PRK13944 protein-L-isoaspartat 99.9 1.7E-22 3.7E-27 175.9 14.9 129 120-252 2-130 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 3.3E-22 7.2E-27 174.8 15.5 131 117-252 4-134 (215)
6 PRK00312 pcm protein-L-isoaspa 99.8 3E-19 6.5E-24 155.3 15.2 122 116-243 5-126 (212)
7 PRK13943 protein-L-isoaspartat 99.8 7E-18 1.5E-22 157.4 15.1 121 119-243 6-131 (322)
8 KOG1661|consensus 99.6 9.2E-16 2E-20 135.0 9.4 123 119-241 9-132 (237)
9 COG2242 CobL Precorrin-6B meth 99.2 1.3E-10 2.9E-15 100.8 10.3 72 170-244 14-85 (187)
10 PF12847 Methyltransf_18: Meth 99.2 1.6E-10 3.5E-15 89.4 9.1 59 192-253 1-59 (112)
11 PF06325 PrmA: Ribosomal prote 99.2 1.4E-10 3E-15 107.3 9.7 81 157-243 130-210 (295)
12 COG2264 PrmA Ribosomal protein 99.1 4.8E-10 1E-14 103.9 10.9 105 133-243 93-211 (300)
13 PRK07402 precorrin-6B methylas 99.1 1.1E-09 2.4E-14 94.2 10.7 76 170-251 20-95 (196)
14 PRK08287 cobalt-precorrin-6Y C 99.1 1.4E-09 3E-14 92.8 10.9 76 170-251 11-86 (187)
15 PF08704 GCD14: tRNA methyltra 99.0 1.5E-09 3.2E-14 98.2 10.9 82 169-254 19-100 (247)
16 PRK00377 cbiT cobalt-precorrin 99.0 2.2E-09 4.7E-14 92.8 10.7 76 172-251 22-97 (198)
17 TIGR02469 CbiT precorrin-6Y C5 99.0 3.8E-09 8.1E-14 82.4 10.3 67 174-243 3-69 (124)
18 PF13847 Methyltransf_31: Meth 99.0 2.5E-09 5.4E-14 88.1 9.2 61 191-254 2-62 (152)
19 TIGR03533 L3_gln_methyl protei 98.9 4.2E-09 9.1E-14 96.6 10.0 92 158-252 85-178 (284)
20 TIGR00406 prmA ribosomal prote 98.9 5.5E-09 1.2E-13 95.7 10.8 81 157-243 128-208 (288)
21 PRK00517 prmA ribosomal protei 98.9 7.1E-09 1.5E-13 92.9 11.2 79 159-243 90-168 (250)
22 PLN02781 Probable caffeoyl-CoA 98.9 8.3E-09 1.8E-13 92.1 10.8 75 174-252 52-126 (234)
23 COG2230 Cfa Cyclopropane fatty 98.9 5.7E-09 1.2E-13 96.1 9.6 68 178-251 60-127 (283)
24 PF01209 Ubie_methyltran: ubiE 98.9 4.6E-09 1E-13 94.0 8.7 67 181-252 38-104 (233)
25 TIGR02752 MenG_heptapren 2-hep 98.9 8.9E-09 1.9E-13 90.0 10.2 63 179-243 34-96 (231)
26 COG2519 GCD14 tRNA(1-methylade 98.9 6E-09 1.3E-13 94.3 8.7 77 171-251 75-151 (256)
27 COG2890 HemK Methylase of poly 98.9 1.1E-08 2.4E-13 93.9 10.6 83 158-242 76-159 (280)
28 COG2226 UbiE Methylase involve 98.9 9.2E-09 2E-13 92.7 9.3 67 180-252 41-107 (238)
29 PRK15451 tRNA cmo(5)U34 methyl 98.9 1.5E-08 3.2E-13 90.7 10.3 72 179-252 43-115 (247)
30 PF02353 CMAS: Mycolic acid cy 98.9 7E-09 1.5E-13 94.9 8.2 71 176-252 48-118 (273)
31 PRK00107 gidB 16S rRNA methylt 98.9 1.7E-08 3.7E-13 87.5 10.2 60 190-253 43-102 (187)
32 PLN02233 ubiquinone biosynthes 98.9 1.4E-08 3E-13 91.9 9.8 55 182-238 65-119 (261)
33 PF01596 Methyltransf_3: O-met 98.9 1.3E-08 2.9E-13 89.5 9.4 75 174-252 29-103 (205)
34 PF05175 MTS: Methyltransferas 98.8 1.6E-08 3.5E-13 85.5 9.2 67 180-252 21-87 (170)
35 PRK11805 N5-glutamine S-adenos 98.8 1.4E-08 3.1E-13 94.2 9.6 92 158-252 97-190 (307)
36 PRK14966 unknown domain/N5-glu 98.8 2.8E-08 6E-13 96.0 11.6 85 156-242 216-300 (423)
37 PLN02476 O-methyltransferase 98.8 3.1E-08 6.7E-13 91.1 11.1 77 172-252 100-176 (278)
38 TIGR00536 hemK_fam HemK family 98.8 2E-08 4.2E-13 91.8 9.4 91 159-252 79-171 (284)
39 PRK01544 bifunctional N5-gluta 98.8 2.2E-08 4.8E-13 98.8 10.0 94 156-252 77-195 (506)
40 PRK11207 tellurite resistance 98.8 2.2E-08 4.8E-13 86.7 8.6 58 181-243 21-78 (197)
41 COG4122 Predicted O-methyltran 98.8 4.7E-08 1E-12 87.1 10.6 72 176-251 45-116 (219)
42 TIGR00138 gidB 16S rRNA methyl 98.8 2.5E-08 5.5E-13 85.7 8.5 57 192-252 42-98 (181)
43 PLN02244 tocopherol O-methyltr 98.8 3.9E-08 8.5E-13 92.2 10.0 70 177-252 100-174 (340)
44 COG2263 Predicted RNA methylas 98.8 5.2E-08 1.1E-12 85.0 9.9 78 171-254 23-101 (198)
45 PTZ00338 dimethyladenosine tra 98.8 3.8E-08 8.3E-13 91.0 9.7 77 169-252 14-91 (294)
46 PRK00274 ksgA 16S ribosomal RN 98.8 3.2E-08 6.9E-13 90.0 8.8 62 172-238 24-85 (272)
47 TIGR00740 methyltransferase, p 98.8 6.2E-08 1.4E-12 85.7 10.4 61 190-252 51-112 (239)
48 TIGR02021 BchM-ChlM magnesium 98.8 5.6E-08 1.2E-12 84.8 9.9 70 178-252 41-110 (219)
49 TIGR00477 tehB tellurite resis 98.7 4.8E-08 1E-12 84.5 8.8 59 180-243 20-78 (195)
50 PRK11036 putative S-adenosyl-L 98.7 7.3E-08 1.6E-12 86.3 9.8 57 191-252 43-99 (255)
51 PRK15001 SAM-dependent 23S rib 98.7 7.3E-08 1.6E-12 92.1 9.6 69 180-251 218-286 (378)
52 PRK13168 rumA 23S rRNA m(5)U19 98.7 8.7E-08 1.9E-12 92.8 10.3 69 176-252 283-351 (443)
53 PRK14896 ksgA 16S ribosomal RN 98.7 9.2E-08 2E-12 86.3 9.5 65 170-239 8-73 (258)
54 PLN02589 caffeoyl-CoA O-methyl 98.7 1.5E-07 3.2E-12 85.3 10.5 75 174-252 63-137 (247)
55 KOG2904|consensus 98.7 1E-07 2.2E-12 87.5 9.0 92 158-252 110-205 (328)
56 TIGR03534 RF_mod_PrmC protein- 98.7 1.7E-07 3.6E-12 82.4 9.9 57 192-252 87-143 (251)
57 PRK07580 Mg-protoporphyrin IX 98.7 1.6E-07 3.5E-12 81.6 9.8 69 179-252 49-118 (230)
58 PRK09328 N5-glutamine S-adenos 98.6 1.7E-07 3.7E-12 83.9 9.7 76 160-238 75-153 (275)
59 smart00650 rADc Ribosomal RNA 98.6 9.3E-08 2E-12 80.5 7.6 56 179-239 2-57 (169)
60 TIGR00537 hemK_rel_arch HemK-r 98.6 1.7E-07 3.6E-12 79.5 9.1 58 180-242 9-66 (179)
61 PRK00121 trmB tRNA (guanine-N( 98.6 1.3E-07 2.8E-12 82.3 8.2 58 191-252 39-96 (202)
62 COG4123 Predicted O-methyltran 98.6 7.8E-08 1.7E-12 87.1 6.8 62 190-254 42-103 (248)
63 PRK03522 rumB 23S rRNA methylu 98.6 1.7E-07 3.7E-12 86.8 9.3 58 190-253 171-228 (315)
64 PF13659 Methyltransf_26: Meth 98.6 1.6E-07 3.4E-12 73.2 7.7 56 193-252 1-56 (117)
65 PRK11873 arsM arsenite S-adeno 98.6 1.8E-07 3.8E-12 84.2 9.1 59 190-251 75-133 (272)
66 PLN02672 methionine S-methyltr 98.6 4.6E-07 1E-11 96.2 13.1 86 155-242 79-167 (1082)
67 PRK14103 trans-aconitate 2-met 98.6 1.1E-07 2.4E-12 85.0 7.2 55 179-236 18-72 (255)
68 PRK08317 hypothetical protein; 98.6 3.2E-07 7E-12 78.9 9.9 58 178-237 7-64 (241)
69 TIGR00446 nop2p NOL1/NOP2/sun 98.6 2.5E-07 5.4E-12 83.8 9.2 61 181-243 62-122 (264)
70 PRK04266 fibrillarin; Provisio 98.6 2.4E-07 5.1E-12 82.7 8.9 61 176-239 55-118 (226)
71 PF13649 Methyltransf_25: Meth 98.6 1.3E-07 2.9E-12 72.7 6.3 54 196-253 1-56 (101)
72 PRK12335 tellurite resistance 98.6 2.6E-07 5.7E-12 84.4 9.2 56 182-242 112-167 (287)
73 PRK01683 trans-aconitate 2-met 98.6 1.6E-07 3.4E-12 83.7 7.6 58 178-238 19-76 (258)
74 TIGR00091 tRNA (guanine-N(7)-) 98.6 1.6E-07 3.5E-12 81.1 7.4 57 192-252 16-72 (194)
75 PF03848 TehB: Tellurite resis 98.6 3.1E-07 6.8E-12 80.3 9.2 59 180-243 20-78 (192)
76 PRK10909 rsmD 16S rRNA m(2)G96 98.6 4.4E-07 9.6E-12 79.5 10.0 72 175-252 37-108 (199)
77 TIGR00479 rumA 23S rRNA (uraci 98.6 2.9E-07 6.2E-12 88.6 9.5 67 178-252 280-346 (431)
78 PRK14904 16S rRNA methyltransf 98.6 3.2E-07 6.9E-12 89.0 9.7 79 169-252 229-307 (445)
79 PRK14902 16S rRNA methyltransf 98.5 3.2E-07 6.9E-12 88.8 9.6 72 170-243 230-301 (444)
80 PLN02585 magnesium protoporphy 98.5 4.2E-07 9.1E-12 84.9 9.8 61 177-240 128-189 (315)
81 TIGR00755 ksgA dimethyladenosi 98.5 3.4E-07 7.4E-12 82.1 8.9 65 170-239 8-73 (253)
82 PRK14968 putative methyltransf 98.5 5E-07 1.1E-11 75.7 9.3 59 180-243 13-71 (188)
83 PRK14903 16S rRNA methyltransf 98.5 3.8E-07 8.2E-12 88.4 9.6 72 170-243 217-288 (431)
84 PRK00216 ubiE ubiquinone/menaq 98.5 6.1E-07 1.3E-11 77.7 9.9 63 178-242 39-101 (239)
85 PRK14901 16S rRNA methyltransf 98.5 3.9E-07 8.4E-12 88.1 9.4 72 170-243 232-303 (434)
86 TIGR02716 C20_methyl_CrtF C-20 98.5 5.9E-07 1.3E-11 82.5 9.9 70 178-253 137-206 (306)
87 PRK14967 putative methyltransf 98.5 5.5E-07 1.2E-11 79.2 9.0 58 181-242 27-84 (223)
88 TIGR03587 Pse_Me-ase pseudamin 98.5 4.7E-07 1E-11 79.3 8.4 48 190-238 41-88 (204)
89 TIGR03704 PrmC_rel_meth putati 98.5 5.6E-07 1.2E-11 81.2 8.9 83 158-242 50-135 (251)
90 PLN02396 hexaprenyldihydroxybe 98.5 4E-07 8.7E-12 85.3 8.1 57 190-251 129-185 (322)
91 COG2227 UbiG 2-polyprenyl-3-me 98.5 2.8E-07 6E-12 83.0 6.7 49 192-243 59-107 (243)
92 TIGR00563 rsmB ribosomal RNA s 98.5 5.9E-07 1.3E-11 86.6 9.3 71 170-243 218-288 (426)
93 TIGR01177 conserved hypothetic 98.5 8E-07 1.7E-11 82.8 9.8 67 173-244 165-231 (329)
94 KOG2915|consensus 98.5 7.7E-07 1.7E-11 81.7 9.2 83 168-254 83-165 (314)
95 TIGR02085 meth_trns_rumB 23S r 98.5 5E-07 1.1E-11 85.9 8.2 72 175-252 214-287 (374)
96 PLN02336 phosphoethanolamine N 98.5 6E-07 1.3E-11 87.1 8.9 66 179-252 255-320 (475)
97 PRK10258 biotin biosynthesis p 98.5 4.6E-07 9.9E-12 80.5 7.4 58 176-238 28-85 (251)
98 PTZ00098 phosphoethanolamine N 98.5 6.3E-07 1.4E-11 81.2 8.4 58 178-239 40-97 (263)
99 PRK00050 16S rRNA m(4)C1402 me 98.4 6.9E-07 1.5E-11 82.9 8.3 71 175-252 4-74 (296)
100 TIGR03438 probable methyltrans 98.4 1.1E-06 2.3E-11 81.2 9.6 51 190-240 61-111 (301)
101 PRK11705 cyclopropane fatty ac 98.4 6.8E-07 1.5E-11 85.4 8.4 57 178-238 155-211 (383)
102 PRK09489 rsmC 16S ribosomal RN 98.4 7.4E-07 1.6E-11 84.1 8.5 61 180-243 186-246 (342)
103 PRK05785 hypothetical protein; 98.4 6.3E-07 1.4E-11 79.5 7.5 44 191-236 50-93 (226)
104 TIGR02143 trmA_only tRNA (urac 98.4 1E-06 2.2E-11 83.3 9.1 66 178-252 186-251 (353)
105 PRK06202 hypothetical protein; 98.4 7.8E-07 1.7E-11 78.3 7.8 52 190-241 58-112 (232)
106 COG4106 Tam Trans-aconitate me 98.4 4.4E-07 9.6E-12 81.0 6.0 55 182-239 22-76 (257)
107 PLN03075 nicotianamine synthas 98.4 1.7E-06 3.7E-11 80.3 9.9 63 190-254 121-185 (296)
108 PRK10901 16S rRNA methyltransf 98.4 1.4E-06 3.1E-11 84.0 9.5 71 170-243 224-294 (427)
109 COG2813 RsmC 16S RNA G1207 met 98.4 9.3E-07 2E-11 82.0 7.8 62 180-244 148-209 (300)
110 PRK05031 tRNA (uracil-5-)-meth 98.4 1.5E-06 3.3E-11 82.3 9.1 54 193-252 207-260 (362)
111 TIGR03840 TMPT_Se_Te thiopurin 98.4 1.8E-06 3.9E-11 76.2 8.9 43 190-235 32-74 (213)
112 KOG1270|consensus 98.4 3.2E-07 7E-12 83.7 4.2 47 193-242 90-136 (282)
113 PRK11727 23S rRNA mA1618 methy 98.4 1.4E-06 3E-11 81.7 8.6 57 192-251 114-171 (321)
114 PRK14121 tRNA (guanine-N(7)-)- 98.4 1.7E-06 3.6E-11 83.1 9.3 66 181-252 113-178 (390)
115 KOG0820|consensus 98.4 1.5E-06 3.3E-11 79.8 8.5 74 165-243 32-106 (315)
116 PRK15068 tRNA mo(5)U34 methylt 98.3 2.6E-06 5.6E-11 79.6 9.2 55 180-238 112-166 (322)
117 COG2265 TrmA SAM-dependent met 98.3 2.1E-06 4.5E-11 83.5 8.9 69 175-251 278-346 (432)
118 PRK04457 spermidine synthase; 98.3 3.5E-06 7.7E-11 76.5 9.8 59 190-251 64-122 (262)
119 PF05958 tRNA_U5-meth_tr: tRNA 98.3 1.6E-06 3.6E-11 81.9 7.7 69 175-252 182-250 (352)
120 COG0030 KsgA Dimethyladenosine 98.3 2.9E-06 6.4E-11 77.4 8.9 65 169-238 8-73 (259)
121 PF08242 Methyltransf_12: Meth 98.3 5.6E-08 1.2E-12 74.1 -2.0 52 197-249 1-52 (99)
122 TIGR00095 RNA methyltransferas 98.3 7.5E-06 1.6E-10 70.9 10.2 69 179-252 37-105 (189)
123 KOG1663|consensus 98.2 5.8E-06 1.3E-10 74.1 9.3 77 172-252 55-131 (237)
124 PTZ00146 fibrillarin; Provisio 98.2 2.9E-06 6.3E-11 78.7 7.4 57 177-235 116-175 (293)
125 smart00828 PKS_MT Methyltransf 98.2 4.5E-06 9.8E-11 72.6 8.0 49 194-243 1-49 (224)
126 TIGR00452 methyltransferase, p 98.2 5.9E-06 1.3E-10 77.2 9.2 51 181-235 112-162 (314)
127 KOG1541|consensus 98.2 2.2E-06 4.7E-11 76.8 5.8 58 174-236 32-91 (270)
128 KOG1271|consensus 98.2 2.7E-06 5.9E-11 74.3 6.2 61 192-255 67-127 (227)
129 KOG2187|consensus 98.2 1.4E-06 2.9E-11 85.7 4.8 71 174-252 367-437 (534)
130 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 8.8E-06 1.9E-10 69.7 9.3 58 179-238 28-85 (223)
131 PRK13255 thiopurine S-methyltr 98.2 7.7E-06 1.7E-10 72.5 8.8 42 190-234 35-76 (218)
132 PF01170 UPF0020: Putative RNA 98.2 1.5E-05 3.3E-10 68.4 10.3 77 171-252 9-94 (179)
133 TIGR02072 BioC biotin biosynth 98.2 6.3E-06 1.4E-10 71.1 7.6 61 177-238 18-79 (240)
134 PF08241 Methyltransf_11: Meth 98.2 3E-06 6.4E-11 62.5 4.8 43 197-241 1-43 (95)
135 KOG3420|consensus 98.2 3.4E-06 7.4E-11 71.4 5.5 72 170-243 24-97 (185)
136 PRK06922 hypothetical protein; 98.2 8.6E-06 1.9E-10 82.7 9.3 51 190-241 416-466 (677)
137 PRK11088 rrmA 23S rRNA methylt 98.1 8.1E-06 1.8E-10 73.9 8.3 47 191-237 84-132 (272)
138 PHA03412 putative methyltransf 98.1 6.6E-06 1.4E-10 74.3 7.6 66 169-238 30-97 (241)
139 PF05401 NodS: Nodulation prot 98.1 6.4E-06 1.4E-10 72.5 7.2 55 192-254 43-97 (201)
140 PRK15128 23S rRNA m(5)C1962 me 98.1 1.1E-05 2.5E-10 77.5 9.5 60 191-253 219-278 (396)
141 PRK05134 bifunctional 3-demeth 98.1 1.4E-05 3E-10 70.0 9.2 59 179-242 37-95 (233)
142 PRK04148 hypothetical protein; 98.1 9.7E-06 2.1E-10 67.3 7.4 53 179-236 5-58 (134)
143 TIGR01444 fkbM_fam methyltrans 98.1 1.3E-05 2.8E-10 64.7 8.0 54 195-252 1-54 (143)
144 COG4976 Predicted methyltransf 98.1 2.5E-06 5.5E-11 76.9 3.9 58 174-236 109-166 (287)
145 PRK11783 rlmL 23S rRNA m(2)G24 98.1 9.8E-06 2.1E-10 83.0 8.6 61 191-254 537-597 (702)
146 PLN02336 phosphoethanolamine N 98.1 1.1E-05 2.4E-10 78.3 8.5 51 180-235 27-77 (475)
147 TIGR02081 metW methionine bios 98.1 7.2E-06 1.6E-10 70.4 6.2 44 190-235 11-54 (194)
148 PF07021 MetW: Methionine bios 98.1 7.4E-06 1.6E-10 71.7 6.3 46 189-236 10-55 (193)
149 PHA03411 putative methyltransf 98.1 1.3E-05 2.8E-10 73.8 8.0 64 169-237 45-108 (279)
150 PF09445 Methyltransf_15: RNA 98.1 1.2E-05 2.6E-10 68.7 7.2 54 194-252 1-54 (163)
151 TIGR01983 UbiG ubiquinone bios 98.1 2.6E-05 5.7E-10 67.5 9.4 63 177-242 28-92 (224)
152 PF13489 Methyltransf_23: Meth 98.1 1.7E-05 3.6E-10 64.3 7.7 40 190-232 20-59 (161)
153 TIGR00438 rrmJ cell division p 98.1 1.4E-05 3E-10 68.3 7.5 40 190-229 30-69 (188)
154 PLN02490 MPBQ/MSBQ methyltrans 98.0 1.6E-05 3.5E-10 75.2 8.5 58 178-238 100-158 (340)
155 KOG1540|consensus 98.0 2.7E-05 5.9E-10 71.1 8.5 68 183-252 93-165 (296)
156 PRK11188 rrmJ 23S rRNA methylt 97.9 1.2E-05 2.7E-10 70.5 5.2 38 190-227 49-86 (209)
157 PF00398 RrnaAD: Ribosomal RNA 97.9 2.4E-05 5.3E-10 70.7 7.3 64 170-238 9-73 (262)
158 PF13679 Methyltransf_32: Meth 97.9 5E-05 1.1E-09 62.4 8.5 51 191-241 24-77 (141)
159 PF02475 Met_10: Met-10+ like- 97.9 4.1E-05 8.8E-10 67.4 7.6 60 190-252 99-158 (200)
160 KOG1499|consensus 97.9 3.9E-05 8.4E-10 72.5 7.4 56 190-250 58-113 (346)
161 smart00138 MeTrc Methyltransfe 97.8 3.9E-05 8.4E-10 69.7 6.8 47 191-237 98-152 (264)
162 PF10294 Methyltransf_16: Puta 97.8 6.5E-05 1.4E-09 64.0 7.6 50 190-241 43-92 (173)
163 KOG3191|consensus 97.8 0.0001 2.3E-09 64.4 8.9 52 192-243 43-94 (209)
164 PF02390 Methyltransf_4: Putat 97.8 8.6E-05 1.9E-09 64.7 8.1 56 193-252 18-73 (195)
165 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00011 2.5E-09 70.3 9.5 65 176-243 42-107 (382)
166 KOG2899|consensus 97.8 3.3E-05 7.2E-10 70.1 5.2 48 191-239 57-104 (288)
167 PRK11933 yebU rRNA (cytosine-C 97.8 0.00011 2.4E-09 72.3 9.2 63 180-244 101-165 (470)
168 PRK00811 spermidine synthase; 97.8 8.7E-05 1.9E-09 68.1 7.8 49 191-240 75-123 (283)
169 cd02440 AdoMet_MTases S-adenos 97.7 0.00014 3.1E-09 52.5 6.7 42 195-238 1-42 (107)
170 TIGR00478 tly hemolysin TlyA f 97.7 0.0001 2.3E-09 66.0 6.9 40 191-232 74-113 (228)
171 TIGR00006 S-adenosyl-methyltra 97.7 0.00023 5E-09 66.5 9.3 70 175-251 5-74 (305)
172 PF08123 DOT1: Histone methyla 97.7 0.00023 4.9E-09 62.9 8.7 62 175-239 27-88 (205)
173 PF05724 TPMT: Thiopurine S-me 97.6 0.00014 3E-09 64.6 7.0 56 174-235 22-77 (218)
174 PF08003 Methyltransf_9: Prote 97.6 0.00023 5E-09 66.5 8.6 58 180-241 105-162 (315)
175 PF03602 Cons_hypoth95: Conser 97.6 0.00056 1.2E-08 59.2 9.6 68 174-243 24-91 (183)
176 PRK13256 thiopurine S-methyltr 97.5 0.00022 4.8E-09 63.9 6.9 56 174-235 28-83 (226)
177 COG1092 Predicted SAM-dependen 97.5 0.00023 4.9E-09 68.7 7.0 57 193-252 218-274 (393)
178 COG1041 Predicted DNA modifica 97.5 0.00026 5.7E-09 67.1 7.0 68 173-245 180-247 (347)
179 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00071 1.5E-08 69.5 10.3 77 173-252 172-289 (702)
180 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.001 2.2E-08 61.2 9.9 74 169-244 64-137 (283)
181 PLN02366 spermidine synthase 97.4 0.00092 2E-08 62.4 9.6 49 191-240 90-138 (308)
182 COG0220 Predicted S-adenosylme 97.4 0.00058 1.3E-08 61.2 7.3 49 194-243 50-98 (227)
183 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.0007 1.5E-08 62.1 8.0 73 169-243 25-103 (311)
184 COG0116 Predicted N6-adenine-s 97.4 0.001 2.2E-08 63.8 9.2 82 169-254 170-289 (381)
185 PF10672 Methyltrans_SAM: S-ad 97.3 0.0011 2.5E-08 61.3 9.2 77 170-254 106-182 (286)
186 TIGR00417 speE spermidine synt 97.3 0.00063 1.4E-08 61.8 7.2 49 191-240 71-119 (270)
187 KOG3010|consensus 97.3 0.00036 7.8E-09 63.3 5.2 45 190-237 30-75 (261)
188 COG0144 Sun tRNA and rRNA cyto 97.3 0.00091 2E-08 63.5 8.3 74 169-244 135-209 (355)
189 COG0742 N6-adenine-specific me 97.2 0.0042 9.2E-08 54.3 10.8 82 160-243 9-92 (187)
190 COG3963 Phospholipid N-methylt 97.2 0.0013 2.9E-08 56.9 7.4 64 174-239 32-95 (194)
191 COG2520 Predicted methyltransf 97.2 0.0011 2.4E-08 62.9 7.5 53 190-244 186-238 (341)
192 PF05971 Methyltransf_10: Prot 97.2 0.002 4.4E-08 60.0 8.9 56 193-252 103-160 (299)
193 PRK03612 spermidine synthase; 97.1 0.0012 2.5E-08 65.7 7.3 45 191-236 296-340 (521)
194 KOG1500|consensus 97.1 0.002 4.3E-08 61.4 7.6 54 192-250 177-230 (517)
195 PRK01581 speE spermidine synth 97.0 0.0013 2.8E-08 63.1 6.4 45 190-235 148-192 (374)
196 TIGR02987 met_A_Alw26 type II 97.0 0.0022 4.7E-08 63.5 8.2 73 169-241 3-87 (524)
197 PF05185 PRMT5: PRMT5 arginine 96.9 0.0026 5.6E-08 62.4 7.7 59 193-253 187-248 (448)
198 KOG2730|consensus 96.9 0.0011 2.3E-08 59.8 4.3 58 192-254 94-151 (263)
199 COG0275 Predicted S-adenosylme 96.8 0.0078 1.7E-07 56.3 9.0 72 175-252 8-79 (314)
200 PRK01544 bifunctional N5-gluta 96.8 0.0032 7E-08 62.4 6.9 52 192-244 347-398 (506)
201 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0029 6.3E-08 59.7 5.9 47 192-240 62-108 (331)
202 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0083 1.8E-07 57.6 8.6 50 194-243 46-95 (374)
203 PF01795 Methyltransf_5: MraW 96.7 0.0025 5.4E-08 59.8 4.9 71 175-252 5-75 (310)
204 COG4076 Predicted RNA methylas 96.6 0.0027 5.8E-08 56.2 4.6 48 193-243 33-80 (252)
205 PF00891 Methyltransf_2: O-met 96.6 0.007 1.5E-07 53.4 7.4 59 181-252 91-149 (241)
206 PF02527 GidB: rRNA small subu 96.6 0.01 2.2E-07 51.6 7.9 69 180-252 33-104 (184)
207 PRK10742 putative methyltransf 96.6 0.012 2.5E-07 53.7 8.4 56 180-240 76-133 (250)
208 PF06080 DUF938: Protein of un 96.5 0.0062 1.3E-07 53.9 6.2 64 182-246 14-78 (204)
209 PF01269 Fibrillarin: Fibrilla 96.5 0.009 2E-07 53.7 7.0 59 175-233 55-114 (229)
210 COG3897 Predicted methyltransf 96.4 0.003 6.5E-08 55.9 3.6 52 190-243 77-128 (218)
211 PF09243 Rsm22: Mitochondrial 96.4 0.012 2.7E-07 53.8 7.8 49 192-240 33-81 (274)
212 PF11599 AviRa: RRNA methyltra 96.4 0.0062 1.3E-07 54.7 5.4 49 192-240 51-100 (246)
213 KOG1501|consensus 96.4 0.006 1.3E-07 59.9 5.7 53 195-251 69-121 (636)
214 TIGR03439 methyl_EasF probable 96.3 0.02 4.3E-07 53.9 8.4 52 190-241 74-128 (319)
215 PHA01634 hypothetical protein 96.2 0.012 2.5E-07 49.1 5.8 49 192-242 28-76 (156)
216 PF07091 FmrO: Ribosomal RNA m 96.2 0.019 4.1E-07 52.4 7.6 68 180-250 93-160 (251)
217 KOG4589|consensus 96.2 0.0079 1.7E-07 53.1 4.8 37 190-226 67-103 (232)
218 PRK11524 putative methyltransf 96.2 0.019 4.1E-07 52.6 7.6 56 178-239 197-252 (284)
219 PF01728 FtsJ: FtsJ-like methy 96.1 0.0093 2E-07 50.4 4.8 37 192-228 23-59 (181)
220 PF01555 N6_N4_Mtase: DNA meth 96.0 0.024 5.2E-07 48.2 7.2 54 176-235 178-231 (231)
221 PF05219 DREV: DREV methyltran 96.0 0.016 3.6E-07 53.1 6.2 69 168-243 66-138 (265)
222 PLN02823 spermine synthase 95.8 0.021 4.6E-07 54.0 6.4 47 192-239 103-149 (336)
223 COG0357 GidB Predicted S-adeno 95.8 0.021 4.5E-07 51.0 5.9 51 193-244 68-118 (215)
224 COG2384 Predicted SAM-dependen 95.6 0.025 5.5E-07 50.7 5.7 59 190-251 14-72 (226)
225 COG0293 FtsJ 23S rRNA methylas 95.5 0.018 4E-07 51.0 4.3 38 190-227 43-80 (205)
226 PRK13699 putative methylase; P 95.5 0.055 1.2E-06 48.3 7.5 49 190-241 161-209 (227)
227 COG0500 SmtA SAM-dependent met 95.3 0.049 1.1E-06 39.9 5.7 42 196-238 52-93 (257)
228 PF13578 Methyltransf_24: Meth 95.3 0.012 2.6E-07 45.3 2.3 53 197-252 1-55 (106)
229 PRK11760 putative 23S rRNA C24 95.2 0.024 5.2E-07 54.1 4.6 35 190-227 209-243 (357)
230 KOG4300|consensus 95.1 0.039 8.5E-07 49.5 5.3 46 195-242 79-124 (252)
231 KOG1122|consensus 95.1 0.04 8.7E-07 53.7 5.7 59 184-244 235-293 (460)
232 COG2521 Predicted archaeal met 94.6 0.013 2.8E-07 53.4 0.8 51 190-242 132-182 (287)
233 KOG4058|consensus 94.5 0.06 1.3E-06 46.1 4.6 62 178-243 60-121 (199)
234 COG0421 SpeE Spermidine syntha 94.2 0.18 4E-06 46.7 7.6 47 194-241 78-124 (282)
235 KOG2361|consensus 94.2 0.036 7.7E-07 50.6 2.7 45 194-239 73-119 (264)
236 PF03059 NAS: Nicotianamine sy 94.2 0.23 4.9E-06 46.0 8.1 59 193-253 121-181 (276)
237 PF12147 Methyltransf_20: Puta 94.1 0.5 1.1E-05 44.4 10.1 59 192-252 135-194 (311)
238 COG1565 Uncharacterized conser 94.0 0.71 1.5E-05 44.4 11.1 103 129-241 14-133 (370)
239 KOG0024|consensus 93.9 0.16 3.5E-06 48.2 6.7 45 190-235 167-212 (354)
240 PF04989 CmcI: Cephalosporin h 93.9 0.094 2E-06 46.6 4.7 74 173-252 15-91 (206)
241 COG0286 HsdM Type I restrictio 93.7 0.26 5.6E-06 48.9 7.9 72 170-243 166-240 (489)
242 KOG3115|consensus 93.5 0.073 1.6E-06 47.7 3.4 47 194-241 62-108 (249)
243 KOG1975|consensus 93.5 0.13 2.9E-06 48.9 5.2 49 190-240 115-163 (389)
244 PF01564 Spermine_synth: Sperm 93.4 0.19 4.1E-06 45.3 6.0 49 191-240 75-123 (246)
245 PF04445 SAM_MT: Putative SAM- 93.1 0.26 5.7E-06 44.6 6.4 54 181-239 64-119 (234)
246 COG1352 CheR Methylase of chem 92.9 0.47 1E-05 43.7 7.8 43 193-235 97-147 (268)
247 PF01739 CheR: CheR methyltran 92.4 0.19 4.1E-06 44.1 4.4 44 192-235 31-82 (196)
248 KOG2651|consensus 92.4 0.55 1.2E-05 45.7 7.8 45 191-237 152-196 (476)
249 COG1889 NOP1 Fibrillarin-like 92.1 0.38 8.3E-06 43.1 6.0 62 175-237 58-120 (231)
250 PF05050 Methyltransf_21: Meth 91.6 0.62 1.3E-05 37.6 6.3 43 198-240 1-48 (167)
251 PF07757 AdoMet_MTase: Predict 91.1 0.31 6.8E-06 39.3 4.0 33 192-227 58-90 (112)
252 KOG1227|consensus 90.7 0.082 1.8E-06 49.7 0.4 51 192-244 194-245 (351)
253 COG1189 Predicted rRNA methyla 90.7 0.34 7.3E-06 44.1 4.3 40 191-232 78-117 (245)
254 COG1063 Tdh Threonine dehydrog 90.5 0.82 1.8E-05 43.0 6.9 47 190-237 166-213 (350)
255 KOG3987|consensus 90.5 0.098 2.1E-06 47.1 0.6 65 168-235 86-152 (288)
256 KOG1596|consensus 90.4 0.17 3.7E-06 46.5 2.1 41 189-229 153-193 (317)
257 PRK00536 speE spermidine synth 90.1 0.66 1.4E-05 42.6 5.6 46 191-239 71-116 (262)
258 PRK10611 chemotaxis methyltran 90.0 0.53 1.2E-05 43.7 5.1 43 194-236 117-166 (287)
259 PF02636 Methyltransf_28: Puta 89.8 0.69 1.5E-05 41.4 5.5 47 194-240 20-73 (252)
260 KOG2360|consensus 89.3 0.47 1E-05 46.0 4.2 74 170-245 193-266 (413)
261 PF05891 Methyltransf_PK: AdoM 89.3 0.32 6.9E-06 43.6 2.8 44 193-239 56-100 (218)
262 PF11899 DUF3419: Protein of u 89.0 1.3 2.8E-05 42.8 7.0 53 183-240 28-80 (380)
263 PF04672 Methyltransf_19: S-ad 88.7 2.2 4.9E-05 39.4 8.0 58 194-254 70-129 (267)
264 cd08283 FDH_like_1 Glutathione 88.5 1.6 3.4E-05 41.1 7.2 46 190-236 182-228 (386)
265 PF02005 TRM: N2,N2-dimethylgu 87.7 2.1 4.5E-05 41.3 7.5 53 192-244 49-101 (377)
266 COG3129 Predicted SAM-dependen 87.3 1.5 3.2E-05 40.2 5.8 51 191-243 77-129 (292)
267 PF05206 TRM13: Methyltransfer 86.3 1.9 4.1E-05 39.5 6.1 53 175-229 3-59 (259)
268 COG4798 Predicted methyltransf 86.0 0.94 2E-05 40.5 3.8 38 190-227 46-83 (238)
269 cd00315 Cyt_C5_DNA_methylase C 85.5 1.9 4.1E-05 39.3 5.8 43 195-239 2-44 (275)
270 COG1064 AdhP Zn-dependent alco 85.3 2.2 4.8E-05 40.7 6.2 45 190-236 164-209 (339)
271 COG0863 DNA modification methy 85.2 3.7 8.1E-05 36.8 7.5 48 190-240 220-267 (302)
272 KOG2078|consensus 84.4 0.75 1.6E-05 45.3 2.6 51 190-243 247-297 (495)
273 KOG1098|consensus 84.2 0.99 2.1E-05 46.3 3.5 39 189-227 41-79 (780)
274 KOG2198|consensus 83.3 2.6 5.7E-05 40.6 5.8 57 185-243 150-209 (375)
275 KOG2920|consensus 83.2 0.94 2E-05 42.1 2.7 38 191-230 115-152 (282)
276 COG1867 TRM1 N2,N2-dimethylgua 81.0 4 8.6E-05 39.5 6.1 49 193-242 53-101 (380)
277 COG4262 Predicted spermidine s 80.9 6.9 0.00015 38.2 7.6 47 190-237 287-333 (508)
278 KOG3924|consensus 79.6 2.6 5.7E-05 41.0 4.4 61 174-237 176-236 (419)
279 TIGR03201 dearomat_had 6-hydro 79.1 7.3 0.00016 35.9 7.1 44 190-235 164-208 (349)
280 KOG1709|consensus 78.8 14 0.00031 33.7 8.5 106 121-237 28-144 (271)
281 PRK09424 pntA NAD(P) transhydr 78.5 4.7 0.0001 40.4 6.0 44 190-235 162-206 (509)
282 PF00145 DNA_methylase: C-5 cy 78.1 5.8 0.00012 35.6 6.0 42 195-238 2-43 (335)
283 cd08254 hydroxyacyl_CoA_DH 6-h 78.0 7.9 0.00017 34.7 6.9 44 190-235 163-207 (338)
284 COG3510 CmcI Cephalosporin hyd 77.5 6.2 0.00014 35.3 5.8 59 173-233 52-113 (237)
285 cd05188 MDR Medium chain reduc 76.8 12 0.00025 32.0 7.3 44 190-235 132-176 (271)
286 COG5379 BtaA S-adenosylmethion 76.6 7.6 0.00016 36.9 6.4 51 185-240 58-108 (414)
287 KOG1269|consensus 76.0 3.2 6.9E-05 39.9 3.9 57 190-248 108-164 (364)
288 KOG2782|consensus 75.7 3.1 6.8E-05 37.9 3.5 61 175-238 28-88 (303)
289 KOG3178|consensus 75.3 4.4 9.6E-05 38.7 4.6 47 194-244 179-225 (342)
290 PRK09880 L-idonate 5-dehydroge 75.2 12 0.00026 34.4 7.4 45 190-235 167-212 (343)
291 TIGR02822 adh_fam_2 zinc-bindi 73.7 13 0.00028 34.2 7.2 44 190-235 163-207 (329)
292 KOG2940|consensus 73.5 6.3 0.00014 36.3 4.9 43 192-236 72-114 (325)
293 TIGR02818 adh_III_F_hyde S-(hy 73.4 13 0.00027 34.8 7.2 45 190-235 183-228 (368)
294 PF01861 DUF43: Protein of unk 72.7 36 0.00078 31.1 9.6 51 191-243 43-93 (243)
295 PF03141 Methyltransf_29: Puta 71.7 3.6 7.9E-05 41.2 3.2 19 195-213 120-138 (506)
296 KOG2793|consensus 71.4 7.4 0.00016 35.6 4.9 35 192-228 86-120 (248)
297 KOG0022|consensus 71.0 11 0.00023 36.2 6.0 51 182-235 184-235 (375)
298 TIGR03451 mycoS_dep_FDH mycoth 69.7 15 0.00034 33.9 6.8 45 190-235 174-219 (358)
299 PF05148 Methyltransf_8: Hypot 69.4 8.7 0.00019 34.5 4.8 43 179-226 60-102 (219)
300 cd08281 liver_ADH_like1 Zinc-d 69.0 16 0.00034 34.1 6.7 45 190-235 189-234 (371)
301 PRK06172 short chain dehydroge 68.4 32 0.00069 29.6 8.2 50 192-241 6-55 (253)
302 PLN02740 Alcohol dehydrogenase 68.1 16 0.00034 34.3 6.5 45 190-235 196-241 (381)
303 PF07942 N2227: N2227-like pro 68.1 16 0.00036 33.7 6.5 44 192-238 56-99 (270)
304 KOG0821|consensus 68.1 11 0.00024 34.5 5.2 58 179-240 39-96 (326)
305 cd08255 2-desacetyl-2-hydroxye 68.0 20 0.00042 31.4 6.8 46 190-236 95-141 (277)
306 PRK05867 short chain dehydroge 67.1 34 0.00073 29.6 8.1 50 192-241 8-57 (253)
307 PRK06124 gluconate 5-dehydroge 67.1 36 0.00079 29.3 8.3 49 192-241 10-59 (256)
308 PF02254 TrkA_N: TrkA-N domain 66.9 7.4 0.00016 29.8 3.5 36 201-236 4-40 (116)
309 KOG2912|consensus 66.9 25 0.00055 33.8 7.5 47 196-243 106-152 (419)
310 cd00401 AdoHcyase S-adenosyl-L 66.9 12 0.00026 36.6 5.6 44 190-235 199-243 (413)
311 PF12242 Eno-Rase_NADH_b: NAD( 66.6 20 0.00044 27.2 5.5 38 190-227 36-74 (78)
312 PRK08217 fabG 3-ketoacyl-(acyl 66.3 38 0.00083 28.8 8.2 48 192-240 4-52 (253)
313 cd08237 ribitol-5-phosphate_DH 66.3 15 0.00032 33.9 5.9 45 190-235 161-207 (341)
314 PRK07035 short chain dehydroge 64.8 42 0.00092 28.8 8.2 49 193-241 8-56 (252)
315 TIGR03366 HpnZ_proposed putati 64.5 24 0.00052 31.4 6.8 45 190-235 118-163 (280)
316 PLN03154 putative allyl alcoho 64.4 24 0.00052 32.7 7.0 43 190-234 156-200 (348)
317 PRK07063 short chain dehydroge 63.8 47 0.001 28.8 8.4 48 192-239 6-53 (260)
318 cd08230 glucose_DH Glucose deh 62.5 20 0.00043 33.0 6.0 43 190-234 170-216 (355)
319 KOG1331|consensus 62.5 3.3 7.2E-05 38.7 0.8 39 192-235 45-83 (293)
320 PF02086 MethyltransfD12: D12 62.1 16 0.00034 32.1 5.0 56 179-239 9-64 (260)
321 cd08261 Zn_ADH7 Alcohol dehydr 62.1 32 0.0007 31.1 7.2 43 190-234 157-200 (337)
322 PF03514 GRAS: GRAS domain fam 61.6 32 0.00069 33.0 7.4 59 180-240 100-168 (374)
323 COG1062 AdhC Zn-dependent alco 60.8 24 0.00053 34.0 6.3 52 182-236 177-229 (366)
324 KOG2671|consensus 60.5 8.5 0.00018 37.3 3.1 65 173-242 191-262 (421)
325 KOG2352|consensus 59.8 5.2 0.00011 39.9 1.7 47 192-239 295-341 (482)
326 PRK07890 short chain dehydroge 59.8 61 0.0013 27.8 8.3 48 192-240 4-52 (258)
327 TIGR00497 hsdM type I restrict 59.7 40 0.00087 33.4 7.9 74 169-242 194-270 (501)
328 PRK07097 gluconate 5-dehydroge 58.9 58 0.0013 28.4 8.1 50 192-241 9-58 (265)
329 PRK06949 short chain dehydroge 58.3 73 0.0016 27.3 8.5 48 192-240 8-56 (258)
330 cd08239 THR_DH_like L-threonin 58.0 32 0.00069 31.2 6.5 50 183-235 156-206 (339)
331 PRK05854 short chain dehydroge 58.0 73 0.0016 29.0 8.9 62 192-255 13-74 (313)
332 PRK06914 short chain dehydroge 57.9 66 0.0014 28.2 8.3 58 193-253 3-61 (280)
333 PRK08945 putative oxoacyl-(acy 57.7 66 0.0014 27.6 8.1 51 190-241 9-60 (247)
334 PF01234 NNMT_PNMT_TEMT: NNMT/ 57.7 15 0.00033 33.7 4.2 46 191-239 55-101 (256)
335 PRK08339 short chain dehydroge 57.7 71 0.0015 28.1 8.5 48 192-239 7-54 (263)
336 PF00107 ADH_zinc_N: Zinc-bind 57.7 15 0.00033 28.3 3.8 32 202-235 1-32 (130)
337 TIGR02825 B4_12hDH leukotriene 57.6 41 0.0009 30.3 7.1 47 184-234 132-180 (325)
338 cd08301 alcohol_DH_plants Plan 57.3 38 0.00083 31.3 7.0 45 190-235 185-230 (369)
339 PRK06113 7-alpha-hydroxysteroi 57.1 68 0.0015 27.7 8.2 49 192-240 10-58 (255)
340 PRK07062 short chain dehydroge 57.0 79 0.0017 27.4 8.6 48 192-239 7-54 (265)
341 PRK09242 tropinone reductase; 56.8 73 0.0016 27.5 8.3 49 192-240 8-56 (257)
342 PRK08703 short chain dehydroge 56.7 74 0.0016 27.1 8.3 48 192-240 5-53 (239)
343 PRK07814 short chain dehydroge 56.7 74 0.0016 27.7 8.4 47 192-239 9-56 (263)
344 cd08245 CAD Cinnamyl alcohol d 56.5 50 0.0011 29.6 7.4 43 190-234 160-203 (330)
345 PRK05866 short chain dehydroge 56.3 68 0.0015 28.9 8.3 49 193-241 40-88 (293)
346 COG5459 Predicted rRNA methyla 56.2 11 0.00025 36.6 3.2 43 192-234 113-155 (484)
347 PRK08862 short chain dehydroge 56.0 62 0.0013 28.1 7.7 50 192-241 4-53 (227)
348 PLN02780 ketoreductase/ oxidor 55.5 77 0.0017 29.2 8.6 48 192-239 52-99 (320)
349 TIGR03206 benzo_BadH 2-hydroxy 55.5 80 0.0017 26.9 8.3 47 193-240 3-50 (250)
350 PLN02668 indole-3-acetate carb 55.3 8.8 0.00019 37.3 2.4 20 193-212 64-83 (386)
351 PRK07454 short chain dehydroge 55.3 90 0.002 26.6 8.6 48 191-239 4-52 (241)
352 PRK07576 short chain dehydroge 54.9 75 0.0016 27.8 8.2 48 192-240 8-56 (264)
353 PLN02827 Alcohol dehydrogenase 54.8 44 0.00095 31.4 7.0 45 190-235 191-236 (378)
354 PRK07523 gluconate 5-dehydroge 54.8 78 0.0017 27.3 8.2 49 192-241 9-58 (255)
355 cd08300 alcohol_DH_class_III c 54.5 50 0.0011 30.6 7.3 45 190-235 184-229 (368)
356 PRK07904 short chain dehydroge 53.9 74 0.0016 27.9 7.9 61 190-254 5-68 (253)
357 PRK05876 short chain dehydroge 53.8 74 0.0016 28.3 8.0 50 192-241 5-54 (275)
358 cd08278 benzyl_alcohol_DH Benz 53.5 47 0.001 30.8 6.9 45 190-235 184-229 (365)
359 PRK07478 short chain dehydroge 53.4 86 0.0019 27.0 8.2 49 193-241 6-54 (254)
360 PRK08643 acetoin reductase; Va 53.3 80 0.0017 27.2 8.0 47 193-240 2-49 (256)
361 PRK06125 short chain dehydroge 53.1 97 0.0021 26.8 8.5 47 192-239 6-53 (259)
362 PRK08589 short chain dehydroge 53.1 88 0.0019 27.5 8.3 47 192-239 5-51 (272)
363 cd08295 double_bond_reductase_ 52.8 49 0.0011 30.1 6.8 44 190-235 149-194 (338)
364 PRK12829 short chain dehydroge 52.6 1E+02 0.0022 26.5 8.5 45 190-235 8-53 (264)
365 PF03721 UDPG_MGDP_dh_N: UDP-g 52.6 13 0.00028 32.0 2.8 33 202-234 7-40 (185)
366 cd08285 NADP_ADH NADP(H)-depen 52.4 54 0.0012 29.9 7.1 45 190-235 164-209 (351)
367 PRK05786 fabG 3-ketoacyl-(acyl 52.3 87 0.0019 26.5 7.9 45 193-238 5-50 (238)
368 PRK09273 hypothetical protein; 52.2 86 0.0019 28.1 7.9 59 173-236 46-104 (211)
369 cd08294 leukotriene_B4_DH_like 52.1 51 0.0011 29.4 6.7 48 184-235 137-186 (329)
370 cd08232 idonate-5-DH L-idonate 52.1 56 0.0012 29.5 7.1 44 191-235 164-208 (339)
371 cd05285 sorbitol_DH Sorbitol d 52.0 55 0.0012 29.8 7.0 48 184-235 156-205 (343)
372 PRK08213 gluconate 5-dehydroge 51.7 93 0.002 26.9 8.2 48 192-240 11-59 (259)
373 PRK07109 short chain dehydroge 51.5 90 0.002 28.8 8.4 50 192-241 7-56 (334)
374 cd08277 liver_alcohol_DH_like 51.4 54 0.0012 30.4 7.0 44 190-234 182-226 (365)
375 PRK06139 short chain dehydroge 51.2 90 0.002 29.0 8.4 50 192-241 6-55 (330)
376 PRK08277 D-mannonate oxidoredu 50.8 91 0.002 27.3 8.0 49 192-240 9-57 (278)
377 PRK07102 short chain dehydroge 49.9 1.1E+02 0.0023 26.2 8.2 57 194-254 2-59 (243)
378 PRK08251 short chain dehydroge 49.8 1.1E+02 0.0025 26.0 8.4 46 193-239 2-48 (248)
379 PRK09072 short chain dehydroge 49.7 1E+02 0.0022 26.8 8.1 46 192-237 4-49 (263)
380 PRK13394 3-hydroxybutyrate deh 49.1 1E+02 0.0022 26.4 7.9 49 192-241 6-55 (262)
381 PRK06720 hypothetical protein; 48.3 1.3E+02 0.0029 25.2 8.3 50 192-241 15-64 (169)
382 PRK06194 hypothetical protein; 48.1 99 0.0022 27.1 7.9 46 193-239 6-52 (287)
383 cd08234 threonine_DH_like L-th 47.9 68 0.0015 28.7 6.9 48 184-234 153-201 (334)
384 cd05278 FDH_like Formaldehyde 47.9 56 0.0012 29.5 6.3 45 190-235 165-210 (347)
385 PF11387 DUF2795: Protein of u 47.7 21 0.00045 23.9 2.6 35 116-152 6-40 (44)
386 PRK12481 2-deoxy-D-gluconate 3 47.5 1E+02 0.0022 26.8 7.8 36 192-227 7-42 (251)
387 PRK07666 fabG 3-ketoacyl-(acyl 47.1 1.2E+02 0.0027 25.7 8.1 46 193-239 7-53 (239)
388 TIGR01202 bchC 2-desacetyl-2-h 46.8 39 0.00084 30.6 5.2 44 191-235 143-187 (308)
389 PF12692 Methyltransf_17: S-ad 46.8 58 0.0013 27.9 5.7 46 177-226 16-61 (160)
390 COG1568 Predicted methyltransf 46.3 1.6E+02 0.0035 28.0 9.0 56 192-249 152-207 (354)
391 PRK12826 3-ketoacyl-(acyl-carr 45.9 1.3E+02 0.0027 25.5 7.9 48 192-240 5-53 (251)
392 PRK06935 2-deoxy-D-gluconate 3 45.8 1.1E+02 0.0024 26.4 7.7 48 192-240 14-61 (258)
393 COG4301 Uncharacterized conser 45.8 1.1E+02 0.0023 28.8 7.6 49 190-238 76-127 (321)
394 PRK12939 short chain dehydroge 45.6 1.4E+02 0.003 25.3 8.2 48 192-240 6-54 (250)
395 PRK06197 short chain dehydroge 45.5 1.3E+02 0.0028 27.0 8.3 47 192-239 15-62 (306)
396 PRK09291 short chain dehydroge 45.4 1.4E+02 0.0031 25.5 8.3 47 194-241 3-50 (257)
397 PF07279 DUF1442: Protein of u 45.3 1.3E+02 0.0029 27.1 8.0 51 191-243 40-95 (218)
398 PRK09186 flagellin modificatio 44.5 1.5E+02 0.0033 25.3 8.3 46 192-238 3-49 (256)
399 PRK05875 short chain dehydroge 43.9 1.4E+02 0.0031 25.9 8.2 46 193-239 7-53 (276)
400 COG0698 RpiB Ribose 5-phosphat 43.8 1.2E+02 0.0025 25.9 7.1 58 174-236 42-99 (151)
401 PRK07453 protochlorophyllide o 43.7 1.3E+02 0.0027 27.3 8.0 45 192-237 5-50 (322)
402 PF03492 Methyltransf_7: SAM d 43.7 64 0.0014 30.4 6.2 23 192-214 16-38 (334)
403 cd08236 sugar_DH NAD(P)-depend 43.6 85 0.0018 28.3 6.8 44 190-234 157-201 (343)
404 PRK07819 3-hydroxybutyryl-CoA 43.4 59 0.0013 29.7 5.8 42 195-239 7-50 (286)
405 PRK10458 DNA cytosine methylas 43.1 98 0.0021 30.8 7.6 43 193-237 88-130 (467)
406 PRK07231 fabG 3-ketoacyl-(acyl 42.9 1.3E+02 0.0029 25.4 7.7 45 193-238 5-50 (251)
407 PRK12429 3-hydroxybutyrate deh 42.5 1.7E+02 0.0036 24.9 8.2 47 193-240 4-51 (258)
408 PRK15057 UDP-glucose 6-dehydro 42.3 32 0.00069 33.1 4.0 34 202-235 7-40 (388)
409 PRK08085 gluconate 5-dehydroge 42.3 1.5E+02 0.0032 25.5 7.9 49 192-240 8-56 (254)
410 PRK10309 galactitol-1-phosphat 41.9 81 0.0018 28.8 6.5 44 190-234 158-202 (347)
411 PRK07326 short chain dehydroge 41.8 1.6E+02 0.0034 24.8 7.9 46 192-238 5-51 (237)
412 cd08238 sorbose_phosphate_red 41.6 55 0.0012 31.0 5.5 47 190-236 173-222 (410)
413 PRK01747 mnmC bifunctional tRN 41.5 36 0.00079 34.7 4.5 34 194-227 59-103 (662)
414 TIGR00518 alaDH alanine dehydr 41.4 63 0.0014 30.9 5.8 43 192-236 166-209 (370)
415 COG0270 Dcm Site-specific DNA 41.1 63 0.0014 30.1 5.7 43 194-238 4-46 (328)
416 KOG1253|consensus 41.0 13 0.00029 37.3 1.2 54 190-243 107-160 (525)
417 TIGR00936 ahcY adenosylhomocys 40.4 57 0.0012 31.9 5.4 41 191-233 193-234 (406)
418 cd08241 QOR1 Quinone oxidoredu 40.4 1.1E+02 0.0024 26.5 6.9 43 190-234 137-181 (323)
419 PRK12823 benD 1,6-dihydroxycyc 40.1 2E+02 0.0043 24.7 8.4 36 193-228 8-43 (260)
420 PRK07831 short chain dehydroge 39.8 2.1E+02 0.0045 24.7 8.5 49 191-239 15-64 (262)
421 TIGR02819 fdhA_non_GSH formald 39.6 1.2E+02 0.0026 28.9 7.4 45 190-235 183-228 (393)
422 PF05788 Orbi_VP1: Orbivirus R 39.3 55 0.0012 35.9 5.3 189 3-214 867-1077(1301)
423 PRK06035 3-hydroxyacyl-CoA deh 38.7 76 0.0017 28.7 5.7 41 195-238 5-47 (291)
424 PRK09496 trkA potassium transp 38.5 1.6E+02 0.0034 28.1 8.1 61 174-236 212-273 (453)
425 PRK06198 short chain dehydroge 38.1 1.7E+02 0.0037 25.1 7.7 46 192-238 5-52 (260)
426 PRK08303 short chain dehydroge 38.0 1.4E+02 0.0031 27.2 7.5 35 192-226 7-41 (305)
427 PRK07774 short chain dehydroge 37.8 2.1E+02 0.0046 24.2 8.2 46 192-238 5-51 (250)
428 PRK06138 short chain dehydroge 37.7 1.9E+02 0.0041 24.6 7.8 44 193-237 5-49 (252)
429 PRK07791 short chain dehydroge 37.4 1.5E+02 0.0034 26.4 7.5 36 192-227 5-40 (286)
430 cd08293 PTGR2 Prostaglandin re 37.1 1.2E+02 0.0027 27.2 6.9 45 190-235 150-198 (345)
431 KOG3045|consensus 37.0 48 0.001 31.2 4.0 28 179-208 168-196 (325)
432 PRK12384 sorbitol-6-phosphate 36.5 2.4E+02 0.0052 24.2 8.3 45 193-238 2-47 (259)
433 PRK05855 short chain dehydroge 36.5 1.8E+02 0.0039 28.1 8.2 48 193-241 315-363 (582)
434 TIGR01500 sepiapter_red sepiap 36.4 2.3E+02 0.0049 24.5 8.2 45 195-239 2-50 (256)
435 PRK08293 3-hydroxybutyryl-CoA 36.2 91 0.002 28.2 5.8 40 195-237 5-46 (287)
436 PRK05808 3-hydroxybutyryl-CoA 36.0 83 0.0018 28.3 5.5 39 195-236 5-45 (282)
437 PRK06200 2,3-dihydroxy-2,3-dih 35.5 1.7E+02 0.0037 25.3 7.3 44 192-235 5-48 (263)
438 TIGR01832 kduD 2-deoxy-D-gluco 35.3 1.9E+02 0.0042 24.5 7.5 35 192-227 4-39 (248)
439 PF00070 Pyr_redox: Pyridine n 35.2 1.7E+02 0.0036 20.9 6.3 42 202-243 6-56 (80)
440 cd08282 PFDH_like Pseudomonas 35.0 1.5E+02 0.0032 27.5 7.2 44 190-234 174-218 (375)
441 PRK07677 short chain dehydroge 34.9 1.5E+02 0.0033 25.4 6.8 45 194-238 2-46 (252)
442 PRK07806 short chain dehydroge 34.8 2.4E+02 0.0052 24.0 8.0 46 192-238 5-52 (248)
443 PRK15182 Vi polysaccharide bio 34.7 52 0.0011 32.1 4.1 39 194-234 7-45 (425)
444 PLN03209 translocon at the inn 34.6 2.1E+02 0.0046 29.4 8.6 48 190-238 77-125 (576)
445 PRK05653 fabG 3-ketoacyl-(acyl 34.2 2.5E+02 0.0055 23.4 8.0 48 193-241 5-53 (246)
446 PF04189 Gcd10p: Gcd10p family 34.0 1.3E+02 0.0029 28.2 6.6 49 174-224 185-233 (299)
447 PRK08226 short chain dehydroge 33.8 2.3E+02 0.005 24.3 7.8 41 192-233 5-46 (263)
448 PF00106 adh_short: short chai 33.3 2.4E+02 0.0052 22.2 7.6 55 195-254 2-60 (167)
449 PRK11730 fadB multifunctional 32.6 93 0.002 32.4 5.8 43 194-239 314-358 (715)
450 PLN02253 xanthoxin dehydrogena 32.5 2.3E+02 0.0051 24.7 7.7 44 192-236 17-61 (280)
451 PRK08993 2-deoxy-D-gluconate 3 32.4 2E+02 0.0044 24.8 7.2 35 192-227 9-44 (253)
452 PRK06701 short chain dehydroge 32.0 2.5E+02 0.0053 25.2 7.9 35 192-227 45-80 (290)
453 TIGR02356 adenyl_thiF thiazole 31.8 1.8E+02 0.0039 25.1 6.7 33 193-226 21-54 (202)
454 PRK12475 thiamine/molybdopteri 31.4 2E+02 0.0043 27.2 7.4 49 193-242 24-94 (338)
455 PRK08628 short chain dehydroge 31.4 2.4E+02 0.0051 24.2 7.4 38 192-230 6-44 (258)
456 PRK07066 3-hydroxybutyryl-CoA 31.3 1.2E+02 0.0026 28.6 5.8 42 194-238 8-51 (321)
457 cd08246 crotonyl_coA_red croto 31.0 1.2E+02 0.0026 28.3 5.9 44 190-235 191-236 (393)
458 PRK12743 oxidoreductase; Provi 31.0 2.8E+02 0.0062 23.8 7.9 46 194-240 3-50 (256)
459 PRK09422 ethanol-active dehydr 30.8 1.7E+02 0.0037 26.2 6.7 47 184-234 156-204 (338)
460 PRK09260 3-hydroxybutyryl-CoA 30.6 1.2E+02 0.0025 27.5 5.5 40 195-237 3-44 (288)
461 PRK07792 fabG 3-ketoacyl-(acyl 30.1 2.7E+02 0.0058 25.1 7.9 47 192-238 11-58 (306)
462 PRK06114 short chain dehydroge 30.0 2.9E+02 0.0063 23.8 7.8 47 192-239 7-55 (254)
463 PRK13771 putative alcohol dehy 29.5 2.4E+02 0.0052 25.2 7.4 44 190-235 160-205 (334)
464 PRK08265 short chain dehydroge 29.2 3E+02 0.0065 23.9 7.8 41 192-233 5-46 (261)
465 PRK07688 thiamine/molybdopteri 29.0 2.8E+02 0.006 26.2 7.9 32 193-226 24-57 (339)
466 cd01487 E1_ThiF_like E1_ThiF_l 28.9 2.6E+02 0.0056 23.6 7.0 31 195-227 1-33 (174)
467 PLN02702 L-idonate 5-dehydroge 28.8 1.8E+02 0.0038 26.8 6.5 44 190-234 179-223 (364)
468 cd08235 iditol_2_DH_like L-idi 28.7 1.7E+02 0.0037 26.2 6.3 43 190-234 163-207 (343)
469 KOG2811|consensus 28.7 1.4E+02 0.003 29.3 5.8 42 192-234 182-226 (420)
470 PRK07201 short chain dehydroge 28.6 2.8E+02 0.0062 27.7 8.4 48 193-241 371-419 (657)
471 PRK05597 molybdopterin biosynt 28.5 3.4E+02 0.0073 25.7 8.4 49 193-242 28-96 (355)
472 PF03686 UPF0146: Uncharacteri 28.4 1.8E+02 0.004 24.0 5.8 35 192-228 13-47 (127)
473 PRK06057 short chain dehydroge 28.2 1.8E+02 0.004 25.0 6.2 42 192-234 6-48 (255)
474 PRK11154 fadJ multifunctional 27.9 1.3E+02 0.0029 31.2 6.1 44 194-239 310-355 (708)
475 cd08243 quinone_oxidoreductase 27.9 2E+02 0.0043 25.1 6.5 42 190-233 140-183 (320)
476 PRK08324 short chain dehydroge 27.7 2.5E+02 0.0055 28.8 8.0 46 192-238 421-467 (681)
477 PRK07775 short chain dehydroge 27.5 3.7E+02 0.0079 23.6 8.1 45 193-238 10-55 (274)
478 cd08296 CAD_like Cinnamyl alco 27.5 2.4E+02 0.0052 25.4 7.1 43 190-234 161-204 (333)
479 PRK06196 oxidoreductase; Provi 27.4 2.8E+02 0.006 25.0 7.5 45 192-237 25-70 (315)
480 PRK01438 murD UDP-N-acetylmura 27.3 1.8E+02 0.0039 28.2 6.6 50 192-243 15-66 (480)
481 TIGR03325 BphB_TodD cis-2,3-di 27.3 2.7E+02 0.0059 24.0 7.2 41 192-233 4-45 (262)
482 PRK08762 molybdopterin biosynt 27.3 2.2E+02 0.0047 27.1 7.0 48 193-241 135-202 (376)
483 PLN02178 cinnamyl-alcohol dehy 27.2 1.4E+02 0.0031 28.0 5.7 37 191-229 177-214 (375)
484 PF02662 FlpD: Methyl-viologen 27.2 1.4E+02 0.0031 24.0 4.9 59 180-253 43-101 (124)
485 COG0677 WecC UDP-N-acetyl-D-ma 27.0 45 0.00098 32.9 2.2 33 202-234 16-49 (436)
486 PRK10083 putative oxidoreducta 26.9 2.2E+02 0.0048 25.5 6.7 43 190-235 158-204 (339)
487 PLN02586 probable cinnamyl alc 26.9 1.7E+02 0.0036 27.2 6.0 38 190-229 181-219 (360)
488 KOG2334|consensus 26.8 66 0.0014 32.0 3.3 33 192-226 81-113 (477)
489 PF10638 Sfi1_C: Spindle body 26.7 19 0.00042 28.9 -0.2 39 21-71 1-39 (108)
490 COG4578 GutM Glucitol operon a 26.7 35 0.00076 28.3 1.2 48 21-71 38-85 (128)
491 PRK08644 thiamine biosynthesis 26.0 3.5E+02 0.0076 23.6 7.6 49 193-242 28-95 (212)
492 cd05281 TDH Threonine dehydrog 26.0 1.8E+02 0.0038 26.4 5.9 44 190-234 161-205 (341)
493 PRK05565 fabG 3-ketoacyl-(acyl 26.0 3.6E+02 0.0079 22.6 7.6 46 193-239 5-52 (247)
494 cd08244 MDR_enoyl_red Possible 25.9 2.1E+02 0.0046 25.2 6.3 43 190-234 140-184 (324)
495 cd05283 CAD1 Cinnamyl alcohol 25.7 2E+02 0.0043 26.0 6.2 43 190-234 167-210 (337)
496 PRK06181 short chain dehydroge 25.6 2.7E+02 0.0058 23.9 6.8 45 194-239 2-47 (263)
497 PRK05476 S-adenosyl-L-homocyst 25.5 1.3E+02 0.0029 29.5 5.2 40 192-233 211-251 (425)
498 PLN02353 probable UDP-glucose 25.5 92 0.002 31.0 4.2 39 195-235 3-44 (473)
499 TIGR01289 LPOR light-dependent 25.4 3.3E+02 0.0071 24.7 7.6 45 193-237 3-48 (314)
500 cd05279 Zn_ADH1 Liver alcohol 25.3 2.3E+02 0.005 26.2 6.6 44 190-234 181-225 (365)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.93 E-value=6.3e-25 Score=193.33 Aligned_cols=128 Identities=38% Similarity=0.578 Sum_probs=113.5
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEE
Q psy7843 120 THFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEI 199 (255)
Q Consensus 120 r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDI 199 (255)
++.||++|++.|.+++++|++||+.+||+.|+|+.....+|.|.+++++.++++++|.+++++++.|+ +++|++||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeI 79 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEI 79 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred cCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 200 GTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 200 GcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
||||||.++.|++++++.++|++||+++++++.|+++++..+.. ++.++.
T Consensus 80 GtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~---nv~~~~ 129 (209)
T PF01135_consen 80 GTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID---NVEVVV 129 (209)
T ss_dssp S-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH---SEEEEE
T ss_pred cCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC---ceeEEE
Confidence 99999999999999988889999999999999999999999864 565543
No 2
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=183.32 Aligned_cols=118 Identities=36% Similarity=0.550 Sum_probs=110.1
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEc
Q psy7843 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIG 200 (255)
Q Consensus 121 ~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIG 200 (255)
+.++++++..+ +.++++++||+.+|||.|+|+.+...+|.|.++++++|+++++|.++++|++.|. ++++++|||||
T Consensus 4 ~~l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 34555565555 7789999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 201 TGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 201 cGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
|||||.++.||+++ ++|++||+++++.+.|++|++.+|+.|
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 99999999999998 699999999999999999999999864
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.90 E-value=7.2e-23 Score=179.45 Aligned_cols=129 Identities=39% Similarity=0.600 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEE
Q psy7843 119 KTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLE 198 (255)
Q Consensus 119 ~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLD 198 (255)
.+++||++|++.|.+++++|++||+.+||+.|+|......+|.|.+++++.|+.++.|.+.+++++.+. ++++++|||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLd 82 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLE 82 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEE
Confidence 447899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 199 IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 199 IGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
||||+|+.++.+++..++.++|+++|+++++++.|+++++..++. ++++++
T Consensus 83 IG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~---~v~~~~ 133 (212)
T PRK13942 83 IGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD---NVEVIV 133 (212)
T ss_pred ECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CeEEEE
Confidence 999999999999998877689999999999999999999988864 455543
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.89 E-value=1.7e-22 Score=175.91 Aligned_cols=129 Identities=31% Similarity=0.432 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEE
Q psy7843 120 THFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEI 199 (255)
Q Consensus 120 r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDI 199 (255)
|+.||++|++.+.+++++|++||+.+||+.|+|+.+...+|.|.++++..++.++.|...+.+++.+. ++++++||||
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred cCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 200 GTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 200 GcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
|||+|+.++.+++..++.++|+++|+++++++.|++++++.++. ++++++.
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~--~~v~~~~ 130 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW--GVVEVYH 130 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEE
Confidence 99999999999998765689999999999999999999988864 3455543
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.89 E-value=3.3e-22 Score=174.78 Aligned_cols=131 Identities=38% Similarity=0.630 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEE
Q psy7843 117 AYKTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKV 196 (255)
Q Consensus 117 ~~~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rV 196 (255)
+..+++||++|++++.+++++|++||+.+||+.|+|+.....+|.+.+++++.++.++.|.+.+.+++.+. ++++++|
T Consensus 4 ~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~V 81 (215)
T TIGR00080 4 ESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKV 81 (215)
T ss_pred hHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 197 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 197 LDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
||||||+|+.++.+++..++.++|+++|+++++++.|+++++++++. +++++.
T Consensus 82 LDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~---~v~~~~ 134 (215)
T TIGR00080 82 LEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD---NVIVIV 134 (215)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC---CeEEEE
Confidence 99999999999999999866678999999999999999999998864 455543
No 6
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.82 E-value=3e-19 Score=155.30 Aligned_cols=122 Identities=33% Similarity=0.499 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCE
Q psy7843 116 AAYKTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDK 195 (255)
Q Consensus 116 ~~~~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~r 195 (255)
+++.|++|+++++..+ +.+++|+++|+.+||+.|+|+.+...+|.+.+++++.++.+++|.+.+++++.+. ++++.+
T Consensus 5 ~~~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~ 81 (212)
T PRK00312 5 ESERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDR 81 (212)
T ss_pred HHHHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCE
Confidence 5578999999888777 9999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 196 VLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 196 VLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|||+|||+|+.+..+++.. ++|+++|+++++++.|++++++.++.
T Consensus 82 VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~ 126 (212)
T PRK00312 82 VLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH 126 (212)
T ss_pred EEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC
Confidence 9999999999999998886 58999999999999999999988764
No 7
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.77 E-value=7e-18 Score=157.36 Aligned_cols=121 Identities=26% Similarity=0.336 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCc-cccccccCCccc-cCC---cccCcHHHHHHHHHHHhccCCCC
Q psy7843 119 KTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDP-LDKGHYDYPIDL-GYG---TWMEPPYQHCLVLELLSGHLKYG 193 (255)
Q Consensus 119 ~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~-~~~aY~d~~~~~-g~g---~~is~P~i~~~~le~L~~~l~~g 193 (255)
.|+.|++.++..| +++ +|++||+.|||+.|+|+.. ...+|.|.+++. ..+ +.+++|.+.+.+++.+. ++++
T Consensus 6 ~~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g 81 (322)
T PRK13943 6 MREKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKG 81 (322)
T ss_pred HHHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCC
Confidence 4577999999888 777 9999999999999999987 478999999875 455 57789999999999999 9999
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
++|||||||+|+.++.+++..++.++|+++|+++++++.|+++++++++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE 131 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998755568999999999999999999998864
No 8
>KOG1661|consensus
Probab=99.63 E-value=9.2e-16 Score=134.98 Aligned_cols=123 Identities=35% Similarity=0.610 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEE
Q psy7843 119 KTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLE 198 (255)
Q Consensus 119 ~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLD 198 (255)
.+..|++.|+.++.|+.+++.+||+.+.|.+|.|...+...|.|.++.++.+.+++.|.+++.+++.|..+++||.+.||
T Consensus 9 ~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~Ld 88 (237)
T KOG1661|consen 9 DNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLD 88 (237)
T ss_pred chHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceee
Confidence 45679999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred EcCCccHHHHHHHHHhCCCeEE-EEEeCCHHHHHHHHHHHHHhC
Q psy7843 199 IGTGSGYLTTLFGAMVGISGKV-YTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 199 IGcGtG~~aa~LA~~~gp~~~V-~gIDis~~~le~Ar~nl~~~g 241 (255)
+|+||||++..+++++++.+.+ +|||.-+++++.+++|+.+.-
T Consensus 89 vGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i 132 (237)
T KOG1661|consen 89 VGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDI 132 (237)
T ss_pred cCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhc
Confidence 9999999999999888665654 999999999999999998753
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=1.3e-10 Score=100.82 Aligned_cols=72 Identities=29% Similarity=0.377 Sum_probs=66.4
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
+..++.+++.+..+..|. +++++++||||||||.+++.++. .+|.++|++||.++++++..++|+++++++|
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n 85 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGVDN 85 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCCCc
Confidence 344889999999999999 99999999999999999999994 5688999999999999999999999999764
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.17 E-value=1.6e-10 Score=89.37 Aligned_cols=59 Identities=31% Similarity=0.551 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
|+.+|||||||+|..+..+++.. +..+|+|+|+|+++++.|++++.+.+.. .+++|++-
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~i~~~~~ 59 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS--DRITFVQG 59 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT--TTEEEEES
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEEC
Confidence 67899999999999999999964 4489999999999999999999776665 67887653
No 11
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.16 E-value=1.4e-10 Score=107.32 Aligned_cols=81 Identities=32% Similarity=0.395 Sum_probs=66.0
Q ss_pred ccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 157 DKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 157 ~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
..++.+....||.|.|-+ .+.+++.+..+.+++++|||+|||||.+++..+++ |. .+|+|+|+|+.+++.|++|
T Consensus 130 ~~I~idPg~AFGTG~H~T----T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N 203 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPT----TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAAREN 203 (295)
T ss_dssp EEEEESTTSSS-SSHCHH----HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHH----HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHH
Confidence 346678888899998855 45666666655778999999999999999998887 45 6899999999999999999
Q ss_pred HHHhCCC
Q psy7843 237 VKAKAET 243 (255)
Q Consensus 237 l~~~gv~ 243 (255)
++.+++.
T Consensus 204 ~~~N~~~ 210 (295)
T PF06325_consen 204 AELNGVE 210 (295)
T ss_dssp HHHTT-T
T ss_pred HHHcCCC
Confidence 9999987
No 12
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=4.8e-10 Score=103.85 Aligned_cols=105 Identities=27% Similarity=0.297 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHh--cCC---CCC--CCCC-------ccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEE
Q psy7843 133 VKSVRVVEAMRE--VDK---EEF--APMD-------PLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLE 198 (255)
Q Consensus 133 I~d~~vl~A~~~--vPR---e~F--vp~~-------~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLD 198 (255)
+.+.+|..+... .|- +.| .|.. .....-.|....||.|.|-++ ..++++|..+.++|.+|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT----~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTT----SLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhH----HHHHHHHHHhhcCCCEEEE
Confidence 458889888765 221 112 1211 112234566677888888654 6677777777789999999
Q ss_pred EcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 199 IGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 199 IGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
+|||||.+++..++++ . .+|+|+|+||.+++.|++|++.+++.
T Consensus 169 vGcGSGILaIAa~kLG-A-~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 169 VGCGSGILAIAAAKLG-A-KKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred ecCChhHHHHHHHHcC-C-ceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 9999999999998874 5 68999999999999999999999986
No 13
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.07 E-value=1.1e-09 Score=94.18 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=64.8
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
+..++++.+...++..+. +.++++|||+|||+|.++..+++.. +.++|+++|+|+++++.+++|++++++. +++
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~---~v~ 93 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK---NVE 93 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC---CeE
Confidence 445677888888888888 8899999999999999999998774 5589999999999999999999988864 355
Q ss_pred EE
Q psy7843 250 FY 251 (255)
Q Consensus 250 f~ 251 (255)
++
T Consensus 94 ~~ 95 (196)
T PRK07402 94 VI 95 (196)
T ss_pred EE
Confidence 54
No 14
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.06 E-value=1.4e-09 Score=92.82 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=64.8
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
...++.+.+...+++.+. +.++.+|||+|||+|..+..+++.. +.++|+++|+++++++.|+++++++++. +++
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~---~i~ 84 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG---NID 84 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC---CeE
Confidence 345677888888888888 8899999999999999999999885 5589999999999999999999988764 355
Q ss_pred EE
Q psy7843 250 FY 251 (255)
Q Consensus 250 f~ 251 (255)
++
T Consensus 85 ~~ 86 (187)
T PRK08287 85 II 86 (187)
T ss_pred EE
Confidence 44
No 15
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.04 E-value=1.5e-09 Score=98.21 Aligned_cols=82 Identities=32% Similarity=0.387 Sum_probs=65.4
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccE
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I 248 (255)
...-+..|.....++..++ ++||++|||.|+|||.++..|++.++|.++|++.|+.++.++.|++|++.+|+. +++
T Consensus 19 rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~--~~v 94 (247)
T PF08704_consen 19 RRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD--DNV 94 (247)
T ss_dssp SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC--TTE
T ss_pred CCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC--CCc
Confidence 3445678889999999999 999999999999999999999999999999999999999999999999999986 567
Q ss_pred EEEEEe
Q psy7843 249 NFYEII 254 (255)
Q Consensus 249 ~f~~i~ 254 (255)
++.+-+
T Consensus 95 ~~~~~D 100 (247)
T PF08704_consen 95 TVHHRD 100 (247)
T ss_dssp EEEES-
T ss_pred eeEecc
Confidence 766543
No 16
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=2.2e-09 Score=92.77 Aligned_cols=76 Identities=28% Similarity=0.420 Sum_probs=64.7
Q ss_pred ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 172 WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 172 ~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
.++.+.+....+..+. +.++++|||+|||+|.+++.+++..++.++|+++|+++++++.|+++++.+++. +++++.
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~--~~v~~~ 97 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL--NNIVLI 97 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CCeEEE
Confidence 3677778888788888 899999999999999999999887666679999999999999999999998853 345544
No 17
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.00 E-value=3.8e-09 Score=82.45 Aligned_cols=67 Identities=31% Similarity=0.460 Sum_probs=57.9
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.+..+...+++.+. +.++++|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+..
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 3 TKREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS 69 (124)
T ss_pred chHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34566777888887 7888999999999999999999986 4489999999999999999999988764
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.99 E-value=2.5e-09 Score=88.12 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
+++.+|||+|||+|.++..+++..++.++++|+|+|+++++.|+++++..++. +++|++-+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~---ni~~~~~d 62 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD---NIEFIQGD 62 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST---TEEEEESB
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc---ccceEEee
Confidence 46789999999999999999965556789999999999999999999999864 67777643
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.95 E-value=4.2e-09 Score=96.55 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=69.8
Q ss_pred cccccCCccccCCcccCcHHHHHHHHHHHhccC--CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 158 KGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 158 ~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l--~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+....+.++.+..+++|.+...+...+..++ .++.+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++
T Consensus 85 ~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 344455566666777777776666655543222 356799999999999999999886 55799999999999999999
Q ss_pred HHHHhCCCccccEEEEE
Q psy7843 236 RVKAKAETYIKRINFYE 252 (255)
Q Consensus 236 nl~~~gv~~i~~I~f~~ 252 (255)
|++.+++. ++++|++
T Consensus 164 n~~~~~~~--~~i~~~~ 178 (284)
T TIGR03533 164 NIERHGLE--DRVTLIQ 178 (284)
T ss_pred HHHHcCCC--CcEEEEE
Confidence 99998875 4566654
No 20
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=5.5e-09 Score=95.74 Aligned_cols=81 Identities=28% Similarity=0.308 Sum_probs=62.9
Q ss_pred ccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 157 DKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 157 ~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
.....+...+++.|.+.++ ..+++.+.....++++|||+|||+|.++..+++. +. .+|+|+|+|+.+++.|++|
T Consensus 128 ~~i~ldpg~aFgtG~h~tt----~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPTT----SLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKN 201 (288)
T ss_pred EEEEECCCCcccCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHH
Confidence 3455666777777777443 3444445434567899999999999999888875 44 6899999999999999999
Q ss_pred HHHhCCC
Q psy7843 237 VKAKAET 243 (255)
Q Consensus 237 l~~~gv~ 243 (255)
+..+++.
T Consensus 202 ~~~n~~~ 208 (288)
T TIGR00406 202 AELNQVS 208 (288)
T ss_pred HHHcCCC
Confidence 9988875
No 21
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.94 E-value=7.1e-09 Score=92.91 Aligned_cols=79 Identities=30% Similarity=0.410 Sum_probs=59.8
Q ss_pred ccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 159 GHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 159 aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+..+...+++.|.+.+. ..+++.+...+.++.+|||+|||+|.+++.+++. ++ .+|+|+|+|+.+++.|++|++
T Consensus 90 i~i~p~~afgtg~h~tt----~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 90 IELDPGMAFGTGTHPTT----RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred EEECCCCccCCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHH
Confidence 34555556777765443 3345555433568899999999999999887775 44 479999999999999999999
Q ss_pred HhCCC
Q psy7843 239 AKAET 243 (255)
Q Consensus 239 ~~gv~ 243 (255)
.+++.
T Consensus 164 ~~~~~ 168 (250)
T PRK00517 164 LNGVE 168 (250)
T ss_pred HcCCC
Confidence 88873
No 22
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.92 E-value=8.3e-09 Score=92.14 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=62.5
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..|...+.+...+. ..++++|||||||+|+.++.+++..++.++|+++|+++++++.|+++++++|+. ++++++.
T Consensus 52 v~~~~g~~L~~l~~--~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~--~~i~~~~ 126 (234)
T PLN02781 52 VPVDEGLFLSMLVK--IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD--HKINFIQ 126 (234)
T ss_pred cCHHHHHHHHHHHH--HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEE
Confidence 34555556656666 778899999999999999999988766789999999999999999999999986 5666654
No 23
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.91 E-value=5.7e-09 Score=96.05 Aligned_cols=68 Identities=31% Similarity=0.350 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
-...+++.|. ++||++|||||||.|.+++.+|+..+ .+|+|+++|+++.+.+++++++.|++ .+++++
T Consensus 60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~--~~v~v~ 127 (283)
T COG2230 60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE--DNVEVR 127 (283)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC--cccEEE
Confidence 4456667777 99999999999999999999999975 79999999999999999999999987 455543
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.91 E-value=4.6e-09 Score=93.96 Aligned_cols=67 Identities=36% Similarity=0.616 Sum_probs=49.4
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.+++.+. .++|.+|||+|||||..+..+++..++.++|+++|+|++|++.|+++++..+.. +|+|++
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v~ 104 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ---NIEFVQ 104 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEEE
Confidence 4556667 889999999999999999999998878899999999999999999999988753 677765
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.91 E-value=8.9e-09 Score=90.02 Aligned_cols=63 Identities=17% Similarity=0.326 Sum_probs=54.6
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
...++..+. ++++++|||+|||+|..+..+++..++.++|+|+|+++++++.|+++++..+..
T Consensus 34 ~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~ 96 (231)
T TIGR02752 34 RKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH 96 (231)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 345666677 888999999999999999999988767789999999999999999999876653
No 26
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=6e-09 Score=94.34 Aligned_cols=77 Identities=30% Similarity=0.399 Sum_probs=68.4
Q ss_pred cccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEE
Q psy7843 171 TWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250 (255)
Q Consensus 171 ~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f 250 (255)
..+..|.....++..+. +.||++|||.|+|||.+++.|++.++|.++|+++|+.++.++.|++|++++++. +++++
T Consensus 75 tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--d~v~~ 150 (256)
T COG2519 75 TQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--DRVTL 150 (256)
T ss_pred CceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc--cceEE
Confidence 34556777888999999 999999999999999999999999999999999999999999999999999876 34554
Q ss_pred E
Q psy7843 251 Y 251 (255)
Q Consensus 251 ~ 251 (255)
.
T Consensus 151 ~ 151 (256)
T COG2519 151 K 151 (256)
T ss_pred E
Confidence 3
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.1e-08 Score=93.87 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=65.1
Q ss_pred cccccCCccccCCcccCcHHHHHHHHHHHhccCCCCC-EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 158 KGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 158 ~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~-rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
..|....+....+..+++|.+...+...+.. ..... +|||||||||.+++.+++.. +..+|+|+|+|+++++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~-~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTELLVEAALAL-LLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchHHHHHHHHHh-hhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 3455555556667778888887766654411 22222 79999999999999999986 557999999999999999999
Q ss_pred HHHhCC
Q psy7843 237 VKAKAE 242 (255)
Q Consensus 237 l~~~gv 242 (255)
++.+++
T Consensus 154 a~~~~l 159 (280)
T COG2890 154 AERNGL 159 (280)
T ss_pred HHHcCC
Confidence 999996
No 28
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.87 E-value=9.2e-09 Score=92.67 Aligned_cols=67 Identities=33% Similarity=0.583 Sum_probs=57.0
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+.+.+.+. +++|.+|||+|||||-.+..+++.++ .++|+++|+|+.|++.|++++...+.. .++|++
T Consensus 41 ~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~---~i~fv~ 107 (238)
T COG2226 41 RALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQ---NVEFVV 107 (238)
T ss_pred HHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCcc---ceEEEE
Confidence 34455556 66899999999999999999999987 699999999999999999999988765 266654
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.87 E-value=1.5e-08 Score=90.66 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=55.1
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+...+..++.++.+|||||||+|..+..+++.. .|.++|+|+|+|++|++.|+++++..+.. .++++++
T Consensus 43 ~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~--~~v~~~~ 115 (247)
T PRK15451 43 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP--TPVDVIE 115 (247)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEe
Confidence 333333333335688999999999999999888753 35689999999999999999999887654 3566544
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.86 E-value=7e-09 Score=94.90 Aligned_cols=71 Identities=32% Similarity=0.359 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 176 PYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 176 P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
......+++.+. +++|++|||||||.|..+..+++..| .+|+||.+|++..+.+++++++.|+. +++++..
T Consensus 48 ~~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~--~~v~v~~ 118 (273)
T PF02353_consen 48 ERKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE--DRVEVRL 118 (273)
T ss_dssp HHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS--STEEEEE
T ss_pred HHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEE
Confidence 344556677777 99999999999999999999999964 79999999999999999999999987 4555543
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.86 E-value=1.7e-08 Score=87.53 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
++++.+|||+|||+|..++.+++.. +.++|+++|+++++++.|+++++.++++ +++|++-
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~---~i~~~~~ 102 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLK---NVTVVHG 102 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCC---CEEEEec
Confidence 4568999999999999999999875 5589999999999999999999999875 3666543
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.85 E-value=1.4e-08 Score=91.86 Aligned_cols=55 Identities=35% Similarity=0.503 Sum_probs=47.8
Q ss_pred HHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 182 ~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+++.+. ++++++|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++..
T Consensus 65 ~~~~~~--~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~ 119 (261)
T PLN02233 65 AVSWSG--AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQE 119 (261)
T ss_pred HHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence 345566 7889999999999999999999887666899999999999999988764
No 33
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.85 E-value=1.3e-08 Score=89.53 Aligned_cols=75 Identities=33% Similarity=0.395 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..|...+.+...+. ..+.++||||||++||.++++++..+++++|+++|++++.++.|++++++.|+. ++|+++.
T Consensus 29 i~~~~g~lL~~l~~--~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~--~~I~~~~ 103 (205)
T PF01596_consen 29 ISPETGQLLQMLVR--LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD--DRIEVIE 103 (205)
T ss_dssp HHHHHHHHHHHHHH--HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG--GGEEEEE
T ss_pred cCHHHHHHHHHHHH--hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC--CcEEEEE
Confidence 34555555555555 667889999999999999999998877799999999999999999999999986 6787764
No 34
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.84 E-value=1.6e-08 Score=85.53 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=56.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..+++.+. ..++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.+++|++.+++++ +++..
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~---v~~~~ 87 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLEN---VEVVQ 87 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTT---EEEEE
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccc---ccccc
Confidence 45666676 4478899999999999999999885 66789999999999999999999998763 55543
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=1.4e-08 Score=94.16 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=68.5
Q ss_pred cccccCCccccCCcccCcHHHHHHHHHHHhccCC--CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 158 KGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLK--YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 158 ~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~--~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+....+.++.+..+++|.+...+...+..+++ ++.+|||+|||+|.+++.+++.. |..+|+++|+|+.+++.|++
T Consensus 97 ~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~ 175 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEI 175 (307)
T ss_pred ceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHH
Confidence 3344455566666667777776665555432222 23689999999999999999885 55899999999999999999
Q ss_pred HHHHhCCCccccEEEEE
Q psy7843 236 RVKAKAETYIKRINFYE 252 (255)
Q Consensus 236 nl~~~gv~~i~~I~f~~ 252 (255)
|++.+++. ++++|++
T Consensus 176 n~~~~~l~--~~i~~~~ 190 (307)
T PRK11805 176 NIERHGLE--DRVTLIE 190 (307)
T ss_pred HHHHhCCC--CcEEEEE
Confidence 99998875 4566654
No 36
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=96.04 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=68.0
Q ss_pred cccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 156 LDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 156 ~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+...|.+..+.+..+..+++|.+...+...+. .+.++.+|||+|||+|.+++.+++.. +..+|+++|+|+++++.|++
T Consensus 216 G~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~-~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~Are 293 (423)
T PRK14966 216 GVREFYGRRFAVNPNVLIPRPETEHLVEAVLA-RLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARK 293 (423)
T ss_pred eeeeecCcEEEeCCCccCCCccHHHHHHHhhh-ccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence 44566677777777777888877766655554 24567799999999999999998875 55899999999999999999
Q ss_pred HHHHhCC
Q psy7843 236 RVKAKAE 242 (255)
Q Consensus 236 nl~~~gv 242 (255)
|++.++.
T Consensus 294 Na~~~g~ 300 (423)
T PRK14966 294 NAADLGA 300 (423)
T ss_pred HHHHcCC
Confidence 9988763
No 37
>PLN02476 O-methyltransferase
Probab=98.82 E-value=3.1e-08 Score=91.14 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=66.2
Q ss_pred ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 172 WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 172 ~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
.+..|...+.+...+. ..++++||||||++||.++.+++..+++++|+++|.+++.++.|+++++++|+. ++|+++
T Consensus 100 ~~v~~~~g~lL~~L~~--~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~--~~I~li 175 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQ--ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS--HKVNVK 175 (278)
T ss_pred cccCHHHHHHHHHHHH--hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEE
Confidence 3456777777777777 778999999999999999999998777789999999999999999999999987 567665
Q ss_pred E
Q psy7843 252 E 252 (255)
Q Consensus 252 ~ 252 (255)
.
T Consensus 176 ~ 176 (278)
T PLN02476 176 H 176 (278)
T ss_pred E
Confidence 3
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.81 E-value=2e-08 Score=91.77 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=66.1
Q ss_pred ccccCCccccCCcccCcHHHHHHHHHHHhcc-CCC-CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 159 GHYDYPIDLGYGTWMEPPYQHCLVLELLSGH-LKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 159 aY~d~~~~~g~g~~is~P~i~~~~le~L~~~-l~~-g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
.|.+..+.+..+..+++|.+...+...+... ..+ ..+|||+|||+|.+++.+++.. +..+|+++|+|+++++.|++|
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 3444555555666666666555554444311 122 3689999999999999999886 557999999999999999999
Q ss_pred HHHhCCCccccEEEEE
Q psy7843 237 VKAKAETYIKRINFYE 252 (255)
Q Consensus 237 l~~~gv~~i~~I~f~~ 252 (255)
++.+++. ++++|++
T Consensus 158 ~~~~~~~--~~v~~~~ 171 (284)
T TIGR00536 158 AEKNQLE--HRVEFIQ 171 (284)
T ss_pred HHHcCCC--CcEEEEE
Confidence 9988864 3566654
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.80 E-value=2.2e-08 Score=98.78 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=73.4
Q ss_pred cccccccCCccccCCcccCcHHHHHHHHHHHhcc-------------------------CCCCCEEEEEcCCccHHHHHH
Q psy7843 156 LDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGH-------------------------LKYGDKVLEIGTGSGYLTTLF 210 (255)
Q Consensus 156 ~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~-------------------------l~~g~rVLDIGcGtG~~aa~L 210 (255)
+...|.+..+.++.+..+++|++...+...+... ..++.+|||+|||+|++++.+
T Consensus 77 G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~l 156 (506)
T PRK01544 77 GVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISL 156 (506)
T ss_pred CcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHH
Confidence 4567777888888889999888877665544311 013468999999999999999
Q ss_pred HHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 211 GAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 211 A~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
++.. +..+|+++|+|+.+++.|++|++.+++. +++++.+
T Consensus 157 a~~~-p~~~v~avDis~~al~~A~~N~~~~~l~--~~v~~~~ 195 (506)
T PRK01544 157 LCEL-PNANVIATDISLDAIEVAKSNAIKYEVT--DRIQIIH 195 (506)
T ss_pred HHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc--cceeeee
Confidence 8876 5589999999999999999999988865 3565544
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.79 E-value=2.2e-08 Score=86.74 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=49.8
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.+++.+. ..++.+|||+|||+|..+..|++.. .+|+|+|+|+++++.++++.+..++.
T Consensus 21 ~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~ 78 (197)
T PRK11207 21 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLD 78 (197)
T ss_pred HHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3455566 6677899999999999999999874 79999999999999999999887764
No 41
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.78 E-value=4.7e-08 Score=87.10 Aligned_cols=72 Identities=29% Similarity=0.365 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 176 PYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 176 P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
|.....+...+. ..++++|||||++.||+++++|...+++++++++|+++++++.|++|+++.|+. ++|+++
T Consensus 45 ~e~g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~--~~i~~~ 116 (219)
T COG4122 45 PETGALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD--DRIELL 116 (219)
T ss_pred hhHHHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEE
Confidence 667777777777 888999999999999999999999865899999999999999999999999997 445543
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.78 E-value=2.5e-08 Score=85.74 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
++++|||+|||+|+++..+++.. +.++|+++|.|+++++.++++++++++. ++++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~---~i~~i~ 98 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLN---NVEIVN 98 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCC---CeEEEe
Confidence 48899999999999999998764 5589999999999999999999988864 465554
No 43
>PLN02244 tocopherol O-methyltransferase
Probab=98.77 E-value=3.9e-08 Score=92.16 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccC-----CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 177 YQHCLVLELLSGHL-----KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 177 ~i~~~~le~L~~~l-----~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
.....+++.+. + +++++|||||||+|..+..+++..+ ++|+|||+|+.+++.|+++.+..++. ++++|+
T Consensus 100 ~~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~--~~v~~~ 173 (340)
T PLN02244 100 RMIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS--DKVSFQ 173 (340)
T ss_pred HHHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC--CceEEE
Confidence 34455566665 5 6789999999999999999998763 79999999999999999999887764 456665
Q ss_pred E
Q psy7843 252 E 252 (255)
Q Consensus 252 ~ 252 (255)
.
T Consensus 174 ~ 174 (340)
T PLN02244 174 V 174 (340)
T ss_pred E
Confidence 4
No 44
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.2e-08 Score=85.03 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=58.1
Q ss_pred cccCcHHHHHHHHHHHhc-cCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 171 TWMEPPYQHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 171 ~~is~P~i~~~~le~L~~-~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
|..+-+.+.+.++..... -.-.|..|+|+|||||.+++..+.+ |+ .+|+++|+|+++++.+++|..+++ .+++
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~----g~v~ 96 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL----GDVE 96 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC----CceE
Confidence 344445566666655431 1336788999999999999887766 56 799999999999999999999844 4577
Q ss_pred EEEEe
Q psy7843 250 FYEII 254 (255)
Q Consensus 250 f~~i~ 254 (255)
|..-+
T Consensus 97 f~~~d 101 (198)
T COG2263 97 FVVAD 101 (198)
T ss_pred EEEcc
Confidence 66543
No 45
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.76 E-value=3.8e-08 Score=90.99 Aligned_cols=77 Identities=29% Similarity=0.447 Sum_probs=65.0
Q ss_pred CCccc-CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcccc
Q psy7843 169 YGTWM-EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKR 247 (255)
Q Consensus 169 ~g~~i-s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~ 247 (255)
.||+. ..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+|+++++.+++++...+.. .+
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~--~~ 86 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA--SK 86 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC--Cc
Confidence 46654 68999999999998 8999999999999999999998875 68999999999999999999876532 34
Q ss_pred EEEEE
Q psy7843 248 INFYE 252 (255)
Q Consensus 248 I~f~~ 252 (255)
+++++
T Consensus 87 v~ii~ 91 (294)
T PTZ00338 87 LEVIE 91 (294)
T ss_pred EEEEE
Confidence 55443
No 46
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.75 E-value=3.2e-08 Score=90.00 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=55.5
Q ss_pred ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 172 WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 172 ~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.+..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+|+|+|+++++.+++++.
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc
Confidence 4467778889999888 8899999999999999999999986 589999999999999998774
No 47
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.75 E-value=6.2e-08 Score=85.68 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+.++.+|||||||+|..+..+++.. .|.++|+|+|+|++|++.|+++++..+.. .+++|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~--~~v~~~~ 112 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE--IPVEILC 112 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC--CCeEEEE
Confidence 4578899999999999999998874 35689999999999999999999876543 3455544
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.75 E-value=5.6e-08 Score=84.77 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
....+++.+.....++.+|||+|||+|.++..+++.. .+|+|+|+|+++++.|++++...+.. ++++|..
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~--~~i~~~~ 110 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA--GNVEFEV 110 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC--CceEEEE
Confidence 3344555554213568899999999999999998764 68999999999999999999876643 3566654
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.73 E-value=4.8e-08 Score=84.49 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
..+++.+. ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.++++.+..++.
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~ 78 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLP 78 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 45556666 6667899999999999999999874 79999999999999999988877653
No 50
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.72 E-value=7.3e-08 Score=86.27 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.++.+|||+|||+|..+..+++.. .+|+++|+|+++++.|+++++..++. .+++|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~--~~v~~~~ 99 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS--DNMQFIH 99 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc--cceEEEE
Confidence 456799999999999999999874 79999999999999999999988764 4555543
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.69 E-value=7.3e-08 Score=92.11 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=55.0
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
+.+++.+. ...+.+|||+|||+|.+++.+++.. |..+|+++|+|+.+++.|++|++.++.....+++|.
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE
Confidence 45666665 4445799999999999999999985 668999999999999999999988765322345543
No 52
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.69 E-value=8.7e-08 Score=92.77 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 176 PYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 176 P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..+...+++.+. +.++.+|||+|||+|.+++.+++.. .+|+|+|+|+++++.|++|++.+++. +++|..
T Consensus 283 e~l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~---~v~~~~ 351 (443)
T PRK13168 283 QKMVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD---NVTFYH 351 (443)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEE
Confidence 445566667776 7788999999999999999999886 78999999999999999999988864 466654
No 53
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.68 E-value=9.2e-08 Score=86.30 Aligned_cols=65 Identities=35% Similarity=0.372 Sum_probs=58.3
Q ss_pred Ccc-cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 170 GTW-MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 170 g~~-is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
||+ +..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+++.+++.+++++..
T Consensus 8 GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~ 73 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA 73 (258)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc
Confidence 454 568899999999998 8899999999999999999999985 6899999999999999988764
No 54
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.68 E-value=1.5e-07 Score=85.26 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=64.4
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..|...+.+...+. ..+.++||||||++||.++++++..+++++|+++|++++..+.|++++++.|+. ++|+++.
T Consensus 63 ~~~~~g~lL~~l~~--~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~--~~I~~~~ 137 (247)
T PLN02589 63 TSADEGQFLNMLLK--LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA--HKIDFRE 137 (247)
T ss_pred cCHHHHHHHHHHHH--HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CceEEEe
Confidence 45666676666666 777889999999999999999998877899999999999999999999999986 6777653
No 55
>KOG2904|consensus
Probab=98.66 E-value=1e-07 Score=87.53 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=68.3
Q ss_pred cccccCCccccCCcccCcHHHHHHHH---HHHhc-cCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHH
Q psy7843 158 KGHYDYPIDLGYGTWMEPPYQHCLVL---ELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 158 ~aY~d~~~~~g~g~~is~P~i~~~~l---e~L~~-~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~A 233 (255)
.-|.+-.+....|..|++|++..++. +.+.. ....+..+||+|||||++++.+++..+ .++|+|||.|+.++..|
T Consensus 110 ~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La 188 (328)
T KOG2904|consen 110 QPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLA 188 (328)
T ss_pred CccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHH
Confidence 33444444445677888887766554 44331 012456899999999999999999885 69999999999999999
Q ss_pred HHHHHHhCCCccccEEEEE
Q psy7843 234 RKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 234 r~nl~~~gv~~i~~I~f~~ 252 (255)
.+|++++++. +++..++
T Consensus 189 ~eN~qr~~l~--g~i~v~~ 205 (328)
T KOG2904|consen 189 KENAQRLKLS--GRIEVIH 205 (328)
T ss_pred HHHHHHHhhc--CceEEEe
Confidence 9999999886 4555443
No 56
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.65 E-value=1.7e-07 Score=82.44 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.+.+|||+|||+|..+..+++.. +..+++|+|+++.+++.|++++...++. ++++..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~ 143 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD---NVTFLQ 143 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC---eEEEEE
Confidence 45689999999999999999875 4579999999999999999999988764 354443
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.65 E-value=1.6e-07 Score=81.59 Aligned_cols=69 Identities=26% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHhcc-CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 179 HCLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 179 ~~~~le~L~~~-l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+++.+... ..++.+|||||||+|..+..+++.. .+|+++|+++.+++.|++++...+.. .+++|..
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~--~~i~~~~ 118 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA--GNITFEV 118 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc--cCcEEEE
Confidence 34455555410 3467899999999999999998874 57999999999999999999887653 3455543
No 58
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=1.7e-07 Score=83.87 Aligned_cols=76 Identities=28% Similarity=0.376 Sum_probs=56.2
Q ss_pred cccCCccccCCcccCcHHH---HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 160 HYDYPIDLGYGTWMEPPYQ---HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 160 Y~d~~~~~g~g~~is~P~i---~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
|.+..+..+.+..+++|.. +..++..+. ..++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++
T Consensus 75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~--~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EcCcEEEECCCceeCCCCcHHHHHHHHHhcc--ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 3344444444444554443 333343334 5677899999999999999999986 558999999999999999999
Q ss_pred HH
Q psy7843 237 VK 238 (255)
Q Consensus 237 l~ 238 (255)
++
T Consensus 152 ~~ 153 (275)
T PRK09328 152 AK 153 (275)
T ss_pred HH
Confidence 88
No 59
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.64 E-value=9.3e-08 Score=80.51 Aligned_cols=56 Identities=34% Similarity=0.417 Sum_probs=49.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+++.+++.+++++..
T Consensus 2 ~~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~ 57 (169)
T smart00650 2 IDKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA 57 (169)
T ss_pred HHHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc
Confidence 356677777 8888999999999999999999874 7899999999999999998854
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.64 E-value=1.7e-07 Score=79.47 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=48.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
..+.+.+. ..++++|||+|||+|.++..+++.. .+|+++|+++++++.++++++..++
T Consensus 9 ~~l~~~l~--~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~ 66 (179)
T TIGR00537 9 LLLEANLR--ELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV 66 (179)
T ss_pred HHHHHHHH--hcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34445565 5677899999999999999999875 3899999999999999999987764
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.62 E-value=1.3e-07 Score=82.27 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.++.+|||+|||+|..+..+++.. |..+|+|+|+|+++++.|+++++..++. +++|++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~---~v~~~~ 96 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT---NLRLLC 96 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC---CEEEEe
Confidence 467899999999999999999876 5579999999999999999999887753 466554
No 62
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.61 E-value=7.8e-08 Score=87.13 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
+....+|||||||+|.+++.+|++..+ .+|++||+++++++.|+++++.++++ ++|++++-+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~--~ri~v~~~D 103 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLE--ERIQVIEAD 103 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcch--hceeEehhh
Confidence 455789999999999999999999744 89999999999999999999998876 788876644
No 63
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.61 E-value=1.7e-07 Score=86.83 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
..++.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|+++++.+++. +++|+.-
T Consensus 171 ~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~---~v~~~~~ 228 (315)
T PRK03522 171 ELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLT---NVQFQAL 228 (315)
T ss_pred hcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEEc
Confidence 3467899999999999999999864 79999999999999999999998863 5777653
No 64
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.61 E-value=1.6e-07 Score=73.24 Aligned_cols=56 Identities=27% Similarity=0.368 Sum_probs=49.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
|.+|||+|||+|.+++.+++.. ..+++++|+++.+++.|+.++...+.. .++++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~--~~~~~~~ 56 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD--DRVEVIV 56 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT--TTEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC--ceEEEEE
Confidence 5689999999999999999885 389999999999999999999998875 4566654
No 65
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.61 E-value=1.8e-07 Score=84.22 Aligned_cols=59 Identities=36% Similarity=0.605 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
++++++|||||||+|..+..+++..++.++|+++|+++++++.|+++.+..++. +++|.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~---~v~~~ 133 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT---NVEFR 133 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC---CEEEE
Confidence 778999999999999999888887777779999999999999999999887764 45543
No 66
>PLN02672 methionine S-methyltransferase
Probab=98.60 E-value=4.6e-07 Score=96.17 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=68.2
Q ss_pred ccccccccCCccccCCcccCcHHHHHHHHHHHhccCC---CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHH
Q psy7843 155 PLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLK---YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLE 231 (255)
Q Consensus 155 ~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~---~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le 231 (255)
.+...|....+.+..+..+++|.+...+.. |..... ++.+|||+|||+|++++.+++.. +.++|+|+|+|+++++
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~ 156 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVK 156 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHH
Confidence 455566666777777888999988877655 542111 24689999999999999999986 4479999999999999
Q ss_pred HHHHHHHHhCC
Q psy7843 232 AARKRVKAKAE 242 (255)
Q Consensus 232 ~Ar~nl~~~gv 242 (255)
.|++|++.+++
T Consensus 157 ~A~~Na~~n~l 167 (1082)
T PLN02672 157 VAWINLYLNAL 167 (1082)
T ss_pred HHHHHHHHcCc
Confidence 99999998754
No 67
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.59 E-value=1.1e-07 Score=85.03 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
...+++.+. ..++.+|||||||+|.++..+++.. |.++|+|+|+|+.|++.|+++
T Consensus 18 ~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~ 72 (255)
T PRK14103 18 FYDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER 72 (255)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc
Confidence 345667777 7788999999999999999999886 558999999999999999763
No 68
>PRK08317 hypothetical protein; Provisional
Probab=98.59 E-value=3.2e-07 Score=78.92 Aligned_cols=58 Identities=31% Similarity=0.525 Sum_probs=50.5
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
....+++.+. +.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++.
T Consensus 7 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~ 64 (241)
T PRK08317 7 YRARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64 (241)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHh
Confidence 4455667777 889999999999999999999988766689999999999999999883
No 69
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.58 E-value=2.5e-07 Score=83.84 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=54.1
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.....+. ++++++|||+|||+|..++.+++..++.+.|+++|+++.+++.+++|++++++.
T Consensus 62 ~~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 62 IPPLALE--PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred HHHHHhC--CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 3345567 889999999999999999999998766689999999999999999999999875
No 70
>PRK04266 fibrillarin; Provisional
Probab=98.58 E-value=2.4e-07 Score=82.66 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=50.4
Q ss_pred HHHHHHHHH---HHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 176 PYQHCLVLE---LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 176 P~i~~~~le---~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+...+.++. .+. ++++++|||+|||+|+.+..+++.++ .++|+|+|++++|++.+++++++
T Consensus 55 ~~~~~~ll~~~~~l~--i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~ 118 (226)
T PRK04266 55 SKLAAAILKGLKNFP--IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE 118 (226)
T ss_pred cchHHHHHhhHhhCC--CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh
Confidence 445555554 466 88999999999999999999999885 57999999999999988777654
No 71
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.58 E-value=1.3e-07 Score=72.65 Aligned_cols=54 Identities=30% Similarity=0.584 Sum_probs=41.6
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 196 VLEIGTGSGYLTTLFGAMV--GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 196 VLDIGcGtG~~aa~LA~~~--gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
|||+|||+|..+..+.+.. ++..+++++|+|++|++.++++....+. +++|++-
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~----~~~~~~~ 56 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP----KVRFVQA 56 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT----TSEEEES
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC----ceEEEEC
Confidence 7999999999999999886 4447999999999999999999987664 4666543
No 72
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.57 E-value=2.6e-07 Score=84.39 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=46.9
Q ss_pred HHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 182 ~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
++..+. ..++++|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++.+..++
T Consensus 112 ~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l 167 (287)
T PRK12335 112 VLEAVQ--TVKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL 167 (287)
T ss_pred HHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 444444 3345699999999999999999874 7999999999999999999988775
No 73
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.57 E-value=1.6e-07 Score=83.68 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
....++..+. +.++.+|||||||+|..+..+++.. +.++|+|+|+|+.+++.|+++..
T Consensus 19 ~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~ 76 (258)
T PRK01683 19 PARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP 76 (258)
T ss_pred HHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC
Confidence 3455666666 7789999999999999999999886 55899999999999999998753
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.57 E-value=1.6e-07 Score=81.05 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+|||||||+|.++..+++.. |+.+|+|+|+++++++.|++++...++. ++++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~---ni~~i~ 72 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK---NLHVLC 72 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC---CEEEEc
Confidence 45689999999999999999885 6689999999999999999999988764 566654
No 75
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.57 E-value=3.1e-07 Score=80.32 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
..+++.+. .-++.++||+|||.|..+..||+++ ..|+++|+|+.+++.+++..++.+++
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGLD 78 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCce
Confidence 44556666 5567799999999999999999986 89999999999999999888877764
No 76
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.56 E-value=4.4e-07 Score=79.54 Aligned_cols=72 Identities=11% Similarity=0.010 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+...+++.+.. ..++.+|||+|||+|.+++.++... . .+|+++|+++++++.+++|++.+++. ++++++
T Consensus 37 ~d~v~e~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~---~v~~~~ 108 (199)
T PRK10909 37 TDRVRETLFNWLAP-VIVDARCLDCFAGSGALGLEALSRY-A-AGATLLEMDRAVAQQLIKNLATLKAG---NARVVN 108 (199)
T ss_pred CHHHHHHHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 33444556666541 2567899999999999998643332 2 79999999999999999999998864 455543
No 77
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.56 E-value=2.9e-07 Score=88.61 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+...+.+.+. +.++++|||+|||+|.+++.+++.. .+|+|+|+++++++.|++|++.+++. +++|+.
T Consensus 280 l~~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~---nv~~~~ 346 (431)
T TIGR00479 280 LVDRALEALE--LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA---NVEFLA 346 (431)
T ss_pred HHHHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC---ceEEEe
Confidence 3445555565 6778899999999999999999876 68999999999999999999988864 566654
No 78
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=3.2e-07 Score=88.98 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=62.8
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccE
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I 248 (255)
.|....+..........+. +.+|++|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++.|+. ++
T Consensus 229 ~G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---~v 303 (445)
T PRK14904 229 LGLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT---II 303 (445)
T ss_pred CcEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC---eE
Confidence 3444444444555666677 889999999999999999999987755579999999999999999999999874 45
Q ss_pred EEEE
Q psy7843 249 NFYE 252 (255)
Q Consensus 249 ~f~~ 252 (255)
++.+
T Consensus 304 ~~~~ 307 (445)
T PRK14904 304 ETIE 307 (445)
T ss_pred EEEe
Confidence 5543
No 79
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=3.2e-07 Score=88.81 Aligned_cols=72 Identities=25% Similarity=0.218 Sum_probs=60.6
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|....+......+...+. ++++++|||+|||+|..+..+++..++.++|+++|+++.+++.+++|++++|+.
T Consensus 230 G~~~~qd~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 230 GLITIQDESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred ceEEEEChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 444445555556666777 889999999999999999999998756689999999999999999999999875
No 80
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.54 E-value=4.2e-07 Score=84.92 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 177 YQHCLVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 177 ~i~~~~le~L~~~-l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.....+++.+... ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++.+..
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~ 189 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEA 189 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc
Confidence 3455666666511 1257899999999999999999874 78999999999999999998765
No 81
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.54 E-value=3.4e-07 Score=82.10 Aligned_cols=65 Identities=34% Similarity=0.348 Sum_probs=57.5
Q ss_pred Cc-ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 170 GT-WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 170 g~-~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
|| .+..+.+...+++.+. +.++++|||||||+|.++..+++.. .+|+++|+|+.+++.+++++..
T Consensus 8 gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~ 73 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL 73 (253)
T ss_pred CCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc
Confidence 44 3578889999999998 8889999999999999999999986 5699999999999999988753
No 82
>PRK14968 putative methyltransferase; Provisional
Probab=98.53 E-value=5e-07 Score=75.75 Aligned_cols=59 Identities=32% Similarity=0.358 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
..+.+.+. ..++++|||+|||+|+.+..+++.. .+|+++|+++++++.+++++...+..
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~ 71 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIR 71 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCC
Confidence 34455565 5788899999999999999998873 79999999999999999999887764
No 83
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=3.8e-07 Score=88.36 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=59.8
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|....+......+...+. +++|.+|||+|||+|..|..++...++.++|+++|+++.+++.+++++++.|+.
T Consensus 217 G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 217 GLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS 288 (431)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 443334344455556677 889999999999999999999998766689999999999999999999999875
No 84
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.53 E-value=6.1e-07 Score=77.73 Aligned_cols=63 Identities=24% Similarity=0.439 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
....++..+. ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.
T Consensus 39 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 101 (239)
T PRK00216 39 WRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL 101 (239)
T ss_pred HHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc
Confidence 3445566666 66788999999999999999998874368999999999999999999876543
No 85
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=3.9e-07 Score=88.13 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=60.4
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|....+......+...+. +++|++|||+|||+|..+..+++..++.++|+++|+++.+++.+++|++++|+.
T Consensus 232 g~~~~qd~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~ 303 (434)
T PRK14901 232 GWWTVQDRSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK 303 (434)
T ss_pred CeEEEECHHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 444444444555666777 889999999999999999999998766689999999999999999999999975
No 86
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.51 E-value=5.9e-07 Score=82.47 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
....+++.+. ++++.+|||||||+|..+..+++.. |..+++++|. +++++.+++++++.++. ++++++.-
T Consensus 137 ~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~--~rv~~~~~ 206 (306)
T TIGR02716 137 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA--DRMRGIAV 206 (306)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc--ceEEEEec
Confidence 4556677777 7888999999999999999999986 6689999997 79999999999998875 56776653
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=98.50 E-value=5.5e-07 Score=79.16 Aligned_cols=58 Identities=28% Similarity=0.309 Sum_probs=48.6
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
..+..+. ++++++|||+|||+|.++..+++. +. .+|+++|+++.+++.+++|++..++
T Consensus 27 ~~l~~~~--~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~ 84 (223)
T PRK14967 27 DALAAEG--LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV 84 (223)
T ss_pred HHHHhcc--cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC
Confidence 3344445 678899999999999999999876 33 5999999999999999999988764
No 88
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.50 E-value=4.7e-07 Score=79.31 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+.++.+|||+|||+|+.+..+++.. +..+++|||+|+++++.|++++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCC
Confidence 5577899999999999999998875 34799999999999999998753
No 89
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.49 E-value=5.6e-07 Score=81.19 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred cccccCCccccCCcccCcHHHHHHH---HHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 158 KGHYDYPIDLGYGTWMEPPYQHCLV---LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 158 ~aY~d~~~~~g~g~~is~P~i~~~~---le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
..|.+..+.++.+..+.++.....+ +..+.. ..++.+|||+|||+|.+++.+++.. +..+|+++|+|+.+++.|+
T Consensus 50 ~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~-~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~ 127 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARP-RSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCAR 127 (251)
T ss_pred CeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcc-cCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHH
Confidence 3444445555555555444433333 332220 1234589999999999999999876 4468999999999999999
Q ss_pred HHHHHhCC
Q psy7843 235 KRVKAKAE 242 (255)
Q Consensus 235 ~nl~~~gv 242 (255)
+|++.++.
T Consensus 128 ~N~~~~~~ 135 (251)
T TIGR03704 128 RNLADAGG 135 (251)
T ss_pred HHHHHcCC
Confidence 99987763
No 90
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.49 E-value=4e-07 Score=85.29 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
..++.+|||||||+|..+..+++.. ++|+|||+++++++.|+++....+.. .+++|+
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~--~~i~~~ 185 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVT--STIEYL 185 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcc--cceeEE
Confidence 3467899999999999999998754 79999999999999999887654432 345544
No 91
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=2.8e-07 Score=83.05 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
+|.+|||+|||-|.++..+|+.+ ++|+|+|+++++++.|+....+.++.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN 107 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhcccc
Confidence 78999999999999999999986 89999999999999999999888864
No 92
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.48 E-value=5.9e-07 Score=86.61 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=60.8
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|....+......+...+. +++|++|||+|||+|..+..+++..+ .++|+++|+++++++.+++|+++.|+.
T Consensus 218 G~~~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~ 288 (426)
T TIGR00563 218 GWVTVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT 288 (426)
T ss_pred CeEEEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 444445455567777788 88999999999999999999999875 589999999999999999999999875
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.47 E-value=8e-07 Score=82.79 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=58.7
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
...|.+...++..+. ++++++|||.|||+|.++..++... .+|+|+|+++.|++.|++|++..++.+
T Consensus 165 ~l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~ 231 (329)
T TIGR01177 165 SMDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED 231 (329)
T ss_pred CCCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC
Confidence 346778888888888 8899999999999999998877654 789999999999999999999988763
No 94
>KOG2915|consensus
Probab=98.47 E-value=7.7e-07 Score=81.68 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=72.9
Q ss_pred cCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcccc
Q psy7843 168 GYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKR 247 (255)
Q Consensus 168 g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~ 247 (255)
.++.-|..+...+.+++.|+ ++||.+|||-|+|+|.++..+++.++|.+++++.|+.+...+.|++.++..++. .+
T Consensus 83 phRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~--~~ 158 (314)
T KOG2915|consen 83 PHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG--DN 158 (314)
T ss_pred cCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC--cc
Confidence 34445555667788999999 999999999999999999999999999999999999999999999999999987 67
Q ss_pred EEEEEEe
Q psy7843 248 INFYEII 254 (255)
Q Consensus 248 I~f~~i~ 254 (255)
+++.+-+
T Consensus 159 vt~~hrD 165 (314)
T KOG2915|consen 159 VTVTHRD 165 (314)
T ss_pred eEEEEee
Confidence 7776544
No 95
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.46 E-value=5e-07 Score=85.87 Aligned_cols=72 Identities=11% Similarity=0.043 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHhcc--CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~--l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.+.+...+.+.+..+ ..++.+|||+|||+|.+++.++... .+|+|||+++.+++.|++|++.+++. +++|..
T Consensus 214 n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~---~~~~~~ 287 (374)
T TIGR02085 214 NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLD---NLSFAA 287 (374)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCC---cEEEEE
Confidence 344444444433221 3467899999999999999998764 68999999999999999999998864 566654
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.46 E-value=6e-07 Score=87.07 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+++.+. ++++.+|||||||+|..+..+++..+ .+|+|+|+|+++++.|+++....+ .+++|.+
T Consensus 255 te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~----~~v~~~~ 320 (475)
T PLN02336 255 TKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK----CSVEFEV 320 (475)
T ss_pred HHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC----CceEEEE
Confidence 344566666 77889999999999999999988753 689999999999999998875332 3455544
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.46 E-value=4.6e-07 Score=80.52 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 176 PYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 176 P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
..+...+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+|+++++.|+++..
T Consensus 28 ~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~ 85 (251)
T PRK10258 28 RQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA 85 (251)
T ss_pred HHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC
Confidence 344555666666 5567899999999999999888754 799999999999999998753
No 98
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.46 E-value=6.3e-07 Score=81.17 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
....++..+. +.++.+|||||||+|..+..+++..+ ++|+++|+++.+++.|+++...
T Consensus 40 ~~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 40 ATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred HHHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc
Confidence 3456677777 88999999999999999999887643 6999999999999999988653
No 99
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.44 E-value=6.9e-07 Score=82.93 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.|-+...+++.|. ++++..++|.+||.|..+..+++.+++.++|+|+|.|+++++.|++++.. . .++++++
T Consensus 4 ~pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~---~ri~~i~ 74 (296)
T PRK00050 4 IPVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F---GRFTLVH 74 (296)
T ss_pred ccccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C---CcEEEEe
Confidence 3567788999998 89999999999999999999999986678999999999999999998865 1 3555543
No 100
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.44 E-value=1.1e-06 Score=81.16 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+.++.+|||+|||+|..+..|++......+|+++|+|++|++.|++++...
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~ 111 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD 111 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh
Confidence 457789999999999999999887632378999999999999999998764
No 101
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.43 E-value=6.8e-07 Score=85.43 Aligned_cols=57 Identities=30% Similarity=0.322 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
....+++.+. ++++++|||||||+|..+..+++..+ .+|+|+|+|+++++.|+++++
T Consensus 155 k~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 155 KLDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc
Confidence 3445666677 88999999999999999999998753 689999999999999999885
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.43 E-value=7.4e-07 Score=84.08 Aligned_cols=61 Identities=23% Similarity=0.313 Sum_probs=51.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
..+++.+. .....+|||+|||+|.+++.+++.. |..+|+++|+|+.+++.|+++++.+++.
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE 246 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 45566665 4445689999999999999999885 5579999999999999999999998764
No 103
>PRK05785 hypothetical protein; Provisional
Probab=98.43 E-value=6.3e-07 Score=79.50 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=39.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
.++.+|||||||||..+..+++..+ .+|+|+|+|++|++.|+++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc
Confidence 4578999999999999999988752 6999999999999999875
No 104
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.42 E-value=1e-06 Score=83.29 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+...+.+.+. ..+ .+|||+|||+|.+++.+++.. .+|+|||+++++++.|++|++.+++. +++|+.
T Consensus 186 l~~~v~~~~~--~~~-~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~---~v~~~~ 251 (353)
T TIGR02143 186 MLEWACEVTQ--GSK-GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID---NVQIIR 251 (353)
T ss_pred HHHHHHHHhh--cCC-CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC---cEEEEE
Confidence 3444444444 333 479999999999999999886 68999999999999999999998864 466654
No 105
>PRK06202 hypothetical protein; Provisional
Probab=98.41 E-value=7.8e-07 Score=78.34 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
..++.+|||||||+|.++..|++.. ++..+|+|+|++++|++.|+++....+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~ 112 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG 112 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC
Confidence 3567899999999999998888643 445699999999999999998865443
No 106
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.41 E-value=4.4e-07 Score=80.99 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=47.3
Q ss_pred HHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 182 ~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
++.... +.+..+|.|||||+|..|..|+++. |.+.|+|||-|++|++.|++++-.
T Consensus 22 Lla~Vp--~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~ 76 (257)
T COG4106 22 LLARVP--LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPD 76 (257)
T ss_pred HHhhCC--ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCC
Confidence 334445 6778899999999999999999998 679999999999999999887643
No 107
>PLN03075 nicotianamine synthase; Provisional
Probab=98.40 E-value=1.7e-06 Score=80.28 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=49.0
Q ss_pred CCCCCEEEEEcCCccHH-HHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH-hCCCccccEEEEEEe
Q psy7843 190 LKYGDKVLEIGTGSGYL-TTLFGAMVGISGKVYTIEHIPELLEAARKRVKA-KAETYIKRINFYEII 254 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~-aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~-~gv~~i~~I~f~~i~ 254 (255)
..++++|+|||||+|-+ ++.+++...|+++++++|+|+++++.||+.+++ .++. ++++|...+
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~D 185 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTAD 185 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECc
Confidence 34789999999997744 455554445778999999999999999999965 6765 578887543
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=1.4e-06 Score=84.01 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=58.7
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|....+......+...+. ++++++|||+|||+|..+..+++..+ .++|+++|+++.+++.+++|++++|+.
T Consensus 224 G~~~iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~ 294 (427)
T PRK10901 224 GWVSVQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK 294 (427)
T ss_pred ceEEEECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 444444445556667777 88999999999999999999999863 379999999999999999999998864
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=9.3e-07 Score=82.03 Aligned_cols=62 Identities=29% Similarity=0.398 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
+.+++.+. ...+.+|||+|||.|.+++.+++.. |..+++-+|+|..+++.||+|++.+++++
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~ 209 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVEN 209 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCc
Confidence 45566676 5666699999999999999999986 67899999999999999999999998764
No 110
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.37 E-value=1.5e-06 Score=82.27 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=47.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+.+|||++||+|.+++.+++.. .+|+|||+++.+++.|++|++.+++. +++|+.
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~---~v~~~~ 260 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID---NVQIIR 260 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC---cEEEEE
Confidence 3579999999999999999876 68999999999999999999998864 566654
No 111
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.37 E-value=1.8e-06 Score=76.24 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=38.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+.++.+|||+|||.|..++.||+++ .+|+|||+|+.+++.+.+
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHH
Confidence 4577899999999999999999985 899999999999998643
No 112
>KOG1270|consensus
Probab=98.37 E-value=3.2e-07 Score=83.66 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=41.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
|.+|||+|||+|.++..||+.+ +.|+|||+++++++.|++......+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~ 136 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPV 136 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCch
Confidence 5789999999999999999997 8999999999999999999444433
No 113
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.37 E-value=1.4e-06 Score=81.71 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCccccEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK-AETYIKRINFY 251 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~-gv~~i~~I~f~ 251 (255)
++.++||||||+|.+...++... +..+++|+|+|+.+++.|++|++.+ ++. .+|+++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~--~~I~~~ 171 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN--GAIRLR 171 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc--CcEEEE
Confidence 46799999999999998888765 4489999999999999999999998 665 455553
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.37 E-value=1.7e-06 Score=83.13 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=54.5
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.+++.+. ...+..+||||||+|..++.+|+.. |+..++|+|+++++++.|.+++...++. ++.+++
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~---NV~~i~ 178 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLK---NLLIIN 178 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCC---cEEEEE
Confidence 3444455 5567799999999999999999986 7789999999999999999999988875 455544
No 115
>KOG0820|consensus
Probab=98.36 E-value=1.5e-06 Score=79.79 Aligned_cols=74 Identities=28% Similarity=0.414 Sum_probs=65.2
Q ss_pred ccccCCccc-CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 165 IDLGYGTWM-EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 165 ~~~g~g~~i-s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
+..+.||++ -.|.+...+.+..+ +++++.|||+|.|||.+|..|...+ ++|+++|+|+.|++...++.+....+
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 344668886 48999999999999 9999999999999999999999886 89999999999999999999866543
No 116
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.32 E-value=2.6e-06 Score=79.63 Aligned_cols=55 Identities=27% Similarity=0.184 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
..++..+. ..++++|||||||+|+.+..++... + ..|+|+|+|+.++..++....
T Consensus 112 ~~l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g-~-~~V~GiD~S~~~l~q~~a~~~ 166 (322)
T PRK15068 112 DRVLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAG-A-KLVVGIDPSQLFLCQFEAVRK 166 (322)
T ss_pred HHHHHhhC--CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHHHHH
Confidence 34455555 5678999999999999999998874 4 479999999999987655433
No 117
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.1e-06 Score=83.49 Aligned_cols=69 Identities=29% Similarity=0.347 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
...++..+++.+. ..++++|||+-||.|.+++.||+.+ .+|+|+|+++++++.|++|++.+++. |++|.
T Consensus 278 ~ekl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~---N~~f~ 346 (432)
T COG2265 278 AEKLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGID---NVEFI 346 (432)
T ss_pred HHHHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCC---cEEEE
Confidence 4455666667777 7788999999999999999999877 89999999999999999999999976 36664
No 118
>PRK04457 spermidine synthase; Provisional
Probab=98.32 E-value=3.5e-06 Score=76.50 Aligned_cols=59 Identities=19% Similarity=0.327 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
..++.+|||||||+|.++..+++.. |..+|+++|+++++++.|++++...+.. .+++++
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~--~rv~v~ 122 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENG--ERFEVI 122 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCC--CceEEE
Confidence 3457899999999999999999886 6689999999999999999987654321 355554
No 119
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.31 E-value=1.6e-06 Score=81.86 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...++..+++.+. ..++ +|||+-||+|.+++.||+.+ .+|+|||+++++++.|++|++.++++ +++|+.
T Consensus 182 ~~~l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~---n~~f~~ 250 (352)
T PF05958_consen 182 NEKLYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID---NVEFIR 250 (352)
T ss_dssp HHHHHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT-----SEEEEE
T ss_pred HHHHHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC---cceEEE
Confidence 3445555566666 5555 89999999999999999987 79999999999999999999999974 577754
No 120
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.9e-06 Score=77.38 Aligned_cols=65 Identities=29% Similarity=0.314 Sum_probs=58.4
Q ss_pred CCcc-cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 169 YGTW-MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 169 ~g~~-is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.||+ +..+.+...+.+.+. +.+++.|||||+|.|.+|..|++.. .+|++||+|+.+++..++.+.
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred cccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc
Confidence 3554 457788999999999 9999999999999999999999987 789999999999999999876
No 121
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.30 E-value=5.6e-08 Score=74.13 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=40.3
Q ss_pred EEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 197 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 197 LDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
||||||+|..+..+.+.. +..+++++|+|+.|++.|++++...+..+..+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~ 52 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLR 52 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE
Confidence 799999999999999886 5599999999999999999999987754333333
No 122
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.26 E-value=7.5e-06 Score=70.93 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+...+.. .-++.+|||++||+|.+++.++.++ + .+|++||.++.+++.+++|++.+++. .+++++.
T Consensus 37 rea~f~~l~~-~~~g~~vLDLfaGsG~lglea~srg-a-~~v~~vE~~~~a~~~~~~N~~~~~~~--~~~~~~~ 105 (189)
T TIGR00095 37 RELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSRG-A-KVAFLEEDDRKANQTLKENLALLKSG--EQAEVVR 105 (189)
T ss_pred HHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhCC-C-CEEEEEeCCHHHHHHHHHHHHHhCCc--ccEEEEe
Confidence 3344444431 2358899999999999999998874 4 58999999999999999999999875 3555544
No 123
>KOG1663|consensus
Probab=98.25 E-value=5.8e-06 Score=74.15 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=68.5
Q ss_pred ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 172 WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 172 ~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
....|....++...++ +..++++||||.-|||.++.+|..++++++|+++|++++..+.+.+..+..|+. ++|+|+
T Consensus 55 m~v~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~--~KI~~i 130 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD--HKITFI 130 (237)
T ss_pred eecChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc--ceeeee
Confidence 3456777777777777 778999999999999999999999988999999999999999999999999997 788886
Q ss_pred E
Q psy7843 252 E 252 (255)
Q Consensus 252 ~ 252 (255)
+
T Consensus 131 ~ 131 (237)
T KOG1663|consen 131 E 131 (237)
T ss_pred e
Confidence 5
No 124
>PTZ00146 fibrillarin; Provisional
Probab=98.24 E-value=2.9e-06 Score=78.67 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHHHHHH---HHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 177 YQHCLVL---ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 177 ~i~~~~l---e~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
.+.+.++ +.+. ++++++|||+|||+|+.+..+++++++.++|+++|+++++.+...+
T Consensus 116 Klaa~i~~g~~~l~--IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~ 175 (293)
T PTZ00146 116 KLAAAIIGGVANIP--IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTN 175 (293)
T ss_pred HHHHHHHCCcceec--cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHH
Confidence 3444443 3344 7899999999999999999999999888999999999875544433
No 125
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.22 E-value=4.5e-06 Score=72.59 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=44.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
++|||||||+|..+..+++.. +..+|+|+|+|+++++.|+++++..++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~ 49 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ 49 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence 479999999999999999886 4479999999999999999999988765
No 126
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.22 E-value=5.9e-06 Score=77.23 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=40.7
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
.++..+. ..++++|||||||+|+.+..++... + ..|+|||+|+.|+..++.
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g-~-~~v~GiDpS~~ml~q~~~ 162 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHG-A-KSLVGIDPTVLFLCQFEA 162 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcC-C-CEEEEEcCCHHHHHHHHH
Confidence 3444445 6678999999999999998888763 4 579999999999887544
No 127
>KOG1541|consensus
Probab=98.21 E-value=2.2e-06 Score=76.84 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHhccCCC--CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKY--GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~--g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
.+.....+.++.|. +.. +.-|||||||||..+..|.... ...+|+|+|+.|++.|.++
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVER 91 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHh
Confidence 36677788888888 665 6679999999999999987754 7899999999999999863
No 128
>KOG1271|consensus
Probab=98.21 E-value=2.7e-06 Score=74.33 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEeC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEIIV 255 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~~ 255 (255)
..++|||+|||+|.+...|++.. -.+..+|+|.|+++++.|+...++.+.+ +.|+|.+.++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~--n~I~f~q~DI 127 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFS--NEIRFQQLDI 127 (227)
T ss_pred cccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCC--cceeEEEeec
Confidence 34599999999999999998874 5577999999999999999999988887 5688877653
No 129
>KOG2187|consensus
Probab=98.20 E-value=1.4e-06 Score=85.69 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..+.++..+-+++. +.++..+||+.||||.+++.+|+.+ .+|+|||+++++++.|+.|.+.+|++ +.+|+.
T Consensus 367 ~aevLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis---Na~Fi~ 437 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS---NATFIV 437 (534)
T ss_pred HHHHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc---ceeeee
Confidence 45667778888888 8889999999999999999999988 89999999999999999999999975 577654
No 130
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.20 E-value=8.8e-06 Score=69.73 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=48.2
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
...+++.+. ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.
T Consensus 28 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 28 RRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 345556666 5678999999999999999999887333689999999999999998875
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.18 E-value=7.7e-06 Score=72.48 Aligned_cols=42 Identities=19% Similarity=0.066 Sum_probs=38.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+.++.+|||+|||.|..++.||+.+ .+|+|||+|+.+++.+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHH
Confidence 5567899999999999999999875 89999999999999874
No 132
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.18 E-value=1.5e-05 Score=68.36 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=59.7
Q ss_pred cccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeE---------EEEEeCCHHHHHHHHHHHHHhC
Q psy7843 171 TWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGK---------VYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 171 ~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~---------V~gIDis~~~le~Ar~nl~~~g 241 (255)
....+|.+.+.|+.... .++++.|||--||+|.+.+..+..... .. ++|.|+++++++.|++|++..+
T Consensus 9 ~a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~-~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGAN-IPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp STSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTT-TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhC-cccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 34467888889999888 899999999999999999988877632 33 8899999999999999999999
Q ss_pred CCccccEEEEE
Q psy7843 242 ETYIKRINFYE 252 (255)
Q Consensus 242 v~~i~~I~f~~ 252 (255)
+. ..+.|.+
T Consensus 86 ~~--~~i~~~~ 94 (179)
T PF01170_consen 86 VE--DYIDFIQ 94 (179)
T ss_dssp -C--GGEEEEE
T ss_pred cC--CceEEEe
Confidence 86 5566665
No 133
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.16 E-value=6.3e-06 Score=71.11 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccC-CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 177 YQHCLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 177 ~i~~~~le~L~~~l-~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.....+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++++++.++++..
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC
Confidence 34455555555211 345789999999999999999885 66789999999999999988764
No 134
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.16 E-value=3e-06 Score=62.49 Aligned_cols=43 Identities=35% Similarity=0.516 Sum_probs=36.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 197 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 197 LDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
||+|||+|..+..+++. +..+|+++|+++++++.++++....+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~ 43 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG 43 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC
Confidence 89999999999999998 23899999999999999999887554
No 135
>KOG3420|consensus
Probab=98.15 E-value=3.4e-06 Score=71.37 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=57.9
Q ss_pred CcccCcHHHHHHHHHHHhccC--CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l--~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.|..++|++.+-|+.....-. -.|++++|+|||+|-++...+-. ++ ..|+|+|+++++++.+++|...+.++
T Consensus 24 EQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEVQ 97 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhhh
Confidence 456778889988888776222 36889999999999999655543 34 68999999999999999999998764
No 136
>PRK06922 hypothetical protein; Provisional
Probab=98.15 E-value=8.6e-06 Score=82.68 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=44.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
..++.+|||+|||+|..+..+++.. |..+|+|+|+|+.|++.|+++....+
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g 466 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG 466 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 4578899999999999999998876 66899999999999999999876544
No 137
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.15 E-value=8.1e-06 Score=73.91 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=39.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCC--eEEEEEeCCHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGIS--GKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~--~~V~gIDis~~~le~Ar~nl 237 (255)
.++.+|||+|||+|+.+..+++..+.. ..|+|+|+|+.+++.|+++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~ 132 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY 132 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC
Confidence 355789999999999999998875321 37999999999999998764
No 138
>PHA03412 putative methyltransferase; Provisional
Probab=98.15 E-value=6.6e-06 Score=74.34 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=51.1
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhC--CCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG--ISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~g--p~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.|+..+.+.+...+.. . ...+.+|||+|||+|.+++.+++... +..+|+++|+++.+++.|++++.
T Consensus 30 ~GqFfTP~~iAr~~~i--~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~ 97 (241)
T PHA03412 30 LGAFFTPIGLARDFTI--D--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP 97 (241)
T ss_pred CCccCCCHHHHHHHHH--h--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc
Confidence 3666666667666542 2 23467999999999999999988641 23689999999999999998864
No 139
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.14 E-value=6.4e-06 Score=72.46 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
.=.++||+|||.|.+|..|+..+ .+++++|+++.+++.||++++.. .+|+|.+-+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~d 97 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL-----PHVEWIQAD 97 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECc
Confidence 34689999999999999999998 89999999999999999999854 246766543
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.14 E-value=1.1e-05 Score=77.54 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
.++++|||+|||+|.+++.++.. +. .+|+++|+|+.+++.|++|++.+++. ..+++|++-
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga-~~V~~VD~s~~al~~a~~N~~~Ngl~-~~~v~~i~~ 278 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GC-SQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRD 278 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHHHHHcCCC-CCcEEEEEc
Confidence 46889999999999998776543 32 59999999999999999999999874 135666543
No 141
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.13 E-value=1.4e-05 Score=70.00 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
...+...+. ..++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++...+.
T Consensus 37 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~ 95 (233)
T PRK05134 37 LNYIREHAG--GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGL 95 (233)
T ss_pred HHHHHHhcc--CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCC
Confidence 345555554 5678899999999999999988864 6899999999999999999876653
No 142
>PRK04148 hypothetical protein; Provisional
Probab=98.11 E-value=9.7e-06 Score=67.26 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccH-HHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGY-LTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~-~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
...+.+.+. ..++.+|||||||+|. .+..|++.. .+|+++|+++.+++.++++
T Consensus 5 ~~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~ 58 (134)
T PRK04148 5 AEFIAENYE--KGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL 58 (134)
T ss_pred HHHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh
Confidence 344555554 4456899999999997 777888764 7999999999999988776
No 143
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.11 E-value=1.3e-05 Score=64.72 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=46.0
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.|||+|||.|+.+..+++.. +.++|+++|.++++.+.++++++.+++. ++++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~---~v~~~~ 54 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLP---NVVLLN 54 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCC---cEEEEE
Confidence 38999999999999999875 6579999999999999999999988764 355443
No 144
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.10 E-value=2.5e-06 Score=76.89 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=52.0
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+.|...+.++..++ ..+-+++||+|||||..+..|-.+. .+++|+|+|+.|++.|.++
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 57888888998888 7777899999999999999998887 7999999999999999764
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.09 E-value=9.8e-06 Score=83.03 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
.++++|||+|||+|.+++.+++. |. .+|++||+|+.+++.|++|++.+++. ..+++|++-+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D 597 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQAD 597 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEcc
Confidence 35889999999999999999985 33 57999999999999999999999874 2367776543
No 146
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.09 E-value=1.1e-05 Score=78.26 Aligned_cols=51 Identities=27% Similarity=0.445 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+++.+. ..++.+|||||||+|..+..+++.. .+|+|+|+++++++.+++
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~ 77 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES 77 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH
Confidence 44555666 5677899999999999999999885 689999999999998765
No 147
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.08 E-value=7.2e-06 Score=70.39 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+.++++|||||||+|.++..+++..+ ..++|+|+++++++.+++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA 54 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH
Confidence 55788999999999999998876542 578999999999999865
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.08 E-value=7.4e-06 Score=71.73 Aligned_cols=46 Identities=26% Similarity=0.406 Sum_probs=39.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 189 ~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+++||.||||+|||.|.+...|.+.. +.+.+|||++++.+..+.++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r 55 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR 55 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc
Confidence 47799999999999999999998753 37899999999988877654
No 149
>PHA03411 putative methyltransferase; Provisional
Probab=98.07 E-value=1.3e-05 Score=73.84 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
.|+..+.+.+...++ +. .+++.+|||+|||+|.+++.+++..+ ..+|+++|+++.+++.|++++
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC
Confidence 456665555554432 34 45667999999999999998887652 269999999999999999874
No 150
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.06 E-value=1.2e-05 Score=68.73 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=46.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..|+|+.||.|..++.+|+.+ .+|++||+++..++.|+.|++-.|+. ++|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~--~~I~~i~ 54 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA--DNIDFIC 54 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G--GGEEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEe
Confidence 369999999999999999987 79999999999999999999999985 7888875
No 151
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.06 E-value=2.6e-05 Score=67.53 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcc--CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 177 YQHCLVLELLSGH--LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 177 ~i~~~~le~L~~~--l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
.....+.+.+... ...+.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++...+.
T Consensus 28 ~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL 92 (224)
T ss_pred HHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 3445555555421 1347899999999999999888764 5799999999999999999887664
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.06 E-value=1.7e-05 Score=64.32 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 232 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~ 232 (255)
..++.+|||||||+|..+..+++.. .+|+|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh
Confidence 4678899999999999999997764 599999999999987
No 153
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.06 E-value=1.4e-05 Score=68.34 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 229 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~ 229 (255)
++++++|||+|||+|..+..+++...+.++|+++|+++.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 6889999999999999999998877555789999999864
No 154
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.05 E-value=1.6e-05 Score=75.16 Aligned_cols=58 Identities=24% Similarity=0.312 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccC-CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHL-KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 178 i~~~~le~L~~~l-~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+...+++.+. + .++.+|||||||+|..+..+++..+ ..+|+++|+++++++.|+++..
T Consensus 100 ~r~~~l~~~~--l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~ 158 (340)
T PLN02490 100 MRDDALEPAD--LSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP 158 (340)
T ss_pred HHHHHHhhcc--cCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh
Confidence 3344455444 3 4678999999999999999988763 3799999999999999998764
No 155
>KOG1540|consensus
Probab=98.00 E-value=2.7e-05 Score=71.15 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=55.3
Q ss_pred HHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCC-----eEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGIS-----GKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 183 le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~-----~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...|. +.++.++||++||||.+|..+.+.++.. ++|+.+|++++|++.++++..+.++..-.++.|++
T Consensus 93 v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 93 VSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred hhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 34466 7788999999999999999999988442 79999999999999999999887775333466654
No 156
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.94 E-value=1.2e-05 Score=70.54 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
++++.+|||||||+|..+..+++..++.++|+|||+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 47889999999999999999999887768999999996
No 157
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.94 E-value=2.4e-05 Score=70.70 Aligned_cols=64 Identities=31% Similarity=0.418 Sum_probs=57.8
Q ss_pred Ccc-cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 170 GTW-MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 170 g~~-is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
||+ +..+.+...+++.+. +.+++.|||||+|+|.+|..|++.+ .+|+++|+++.+++..++++.
T Consensus 9 gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT
T ss_pred CcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh
Confidence 444 568899999999999 8899999999999999999999986 799999999999999988765
No 158
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.94 E-value=5e-05 Score=62.43 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.+...|+|+|||-||++..|+..+ .+..+|++||.++..++.|+++.++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 567899999999999999999833 245799999999999999999998877
No 159
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.89 E-value=4.1e-05 Score=67.40 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=46.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
+++++.|+|+.||.|++++.+|+.. +..+|+++|++|.+++..++|++.+++. ++|...+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~--~~i~~~~ 158 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVE--NRIEVIN 158 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-T--TTEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCC--CeEEEEc
Confidence 6789999999999999999999853 3378999999999999999999999987 4565443
No 160
>KOG1499|consensus
Probab=97.87 E-value=3.9e-05 Score=72.48 Aligned_cols=56 Identities=30% Similarity=0.358 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f 250 (255)
+-.++.|||+|||+|.++...|+.+ + .+|+|||.|.-+ +.|++.+..++..+ .|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-A-~~V~aVe~S~ia-~~a~~iv~~N~~~~--ii~v 113 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-A-RKVYAVEASSIA-DFARKIVKDNGLED--VITV 113 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-c-ceEEEEechHHH-HHHHHHHHhcCccc--eEEE
Confidence 4568999999999999999998874 5 799999988766 99999999999873 4444
No 161
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.84 E-value=3.9e-05 Score=69.75 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=37.2
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHHhC----CCeEEEEEeCCHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGY----LTTLFGAMVG----ISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~----~aa~LA~~~g----p~~~V~gIDis~~~le~Ar~nl 237 (255)
.++.+|||+|||||. ++..+++..+ ++.+|+|+|+|+.|++.|++.+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 456799999999996 5556666542 1468999999999999999854
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.83 E-value=6.5e-05 Score=64.03 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=40.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
..++.+|||||||+|..++.+++..++ .+|+..|.++ .++..+.|++.++
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRNIELNG 92 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT-
T ss_pred hcCCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHHHHhcc
Confidence 567889999999999999999998433 7999999999 9999999999876
No 163
>KOG3191|consensus
Probab=97.83 E-value=0.0001 Score=64.37 Aligned_cols=52 Identities=27% Similarity=0.422 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
...-++|||||||+.+..|++..+|.....+.|+++.+++..++.++.+++.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 3678999999999999999998888889999999999999999998887754
No 164
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.80 E-value=8.6e-05 Score=64.74 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=47.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+||||||.|...+.+|+.. |+..++|||++...+..|.+++.+.++. |+.++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~---Nv~~~~ 73 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLK---NVRFLR 73 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTS---SEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhccc---ceEEEE
Confidence 3389999999999999999986 7899999999999999999999999875 566554
No 165
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.79 E-value=0.00011 Score=70.33 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccCC-CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 176 PYQHCLVLELLSGHLK-YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 176 P~i~~~~le~L~~~l~-~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
..+...+++.+. .. ++.+|||++||+|..++.++...+. .+|+++|+++++++.+++|++.+++.
T Consensus 42 rdl~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~ 107 (382)
T PRK04338 42 RDISVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLE 107 (382)
T ss_pred hhHHHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 344555555554 32 4578999999999999999887642 58999999999999999999999875
No 166
>KOG2899|consensus
Probab=97.78 E-value=3.3e-05 Score=70.14 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=43.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
-.+..+|||||-+|.+++.+++.+++ ..|+|+|||+.++..|+++++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 35678999999999999999999987 6899999999999999999865
No 167
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.77 E-value=0.00011 Score=72.28 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=55.6
Q ss_pred HHHHHHH--hccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 180 CLVLELL--SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 180 ~~~le~L--~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
......| . +++|++|||++||+|.-|..++.+.+..+.|+++|+++..++..++|+++.|+.+
T Consensus 101 ~l~~~~L~~~--~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n 165 (470)
T PRK11933 101 MLPVAALFAD--DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN 165 (470)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe
Confidence 3334455 6 7899999999999999999999998777899999999999999999999999864
No 168
>PRK00811 spermidine synthase; Provisional
Probab=97.76 E-value=8.7e-05 Score=68.09 Aligned_cols=49 Identities=22% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++||+||||+|..+..+++.. +..+|++||+|+++++.|++.+...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 456899999999999999888763 3368999999999999999998764
No 169
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.70 E-value=0.00014 Score=52.53 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=35.6
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+|+|+|||+|..+..+++ . +..+++++|+++.+++.+++...
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~ 42 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAA 42 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHh
Confidence 489999999999998887 2 34799999999999999986443
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.69 E-value=0.0001 Score=66.01 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 232 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~ 232 (255)
.++.+|||+|||||.++..+++. |. .+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHH
Confidence 36789999999999999999987 33 789999999987765
No 171
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.68 E-value=0.00023 Score=66.49 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
.|-+...+++.|. +++++.++|.-+|.|.-+..+++..++ ++|+|+|.|+++++.|+++++..+ .+++++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i 74 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE----GRVVLI 74 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC----CcEEEE
Confidence 4667888999998 899999999999999999999988754 999999999999999999987542 345554
No 172
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.67 E-value=0.00023 Score=62.88 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.|.....+++.+. +.+++.++|||||.|...+.+|...+- .+++|||+.+...+.|+...+.
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~ 88 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEE 88 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHH
Confidence 5667788888898 999999999999999999888777642 5699999999999988765543
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.64 E-value=0.00014 Score=64.64 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..|.+...+-. +. ..++.+||..|||.|+....|+..+ .+|+|+|+|+.+++.+.+
T Consensus 22 ~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~ 77 (218)
T PF05724_consen 22 PNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFE 77 (218)
T ss_dssp STHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHH
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHH
Confidence 46667666555 66 7788899999999999999999985 899999999999999844
No 174
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.64 E-value=0.00023 Score=66.49 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.++...+. .-.|++|||||||+||.+..++.. |+ ..|+|||.+.......+---+-.|
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~lg 162 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFLG 162 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHhC
Confidence 34444453 346899999999999999999887 45 689999999988776544333333
No 175
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.57 E-value=0.00056 Score=59.15 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
+...+...+.+.|....-++.+|||+-||||.+++.+..++ . .+|+.||.++.++...++|++..++.
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A-~~v~fVE~~~~a~~~i~~N~~~l~~~ 91 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-A-KSVVFVEKNRKAIKIIKKNLEKLGLE 91 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-G
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-C-CeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 45556667777777221378999999999999999776653 3 69999999999999999999999976
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.54 E-value=0.00022 Score=63.94 Aligned_cols=56 Identities=14% Similarity=-0.028 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..|.+...... +. +.++.+||..|||.|..+..|+.++ .+|+|+|+|+.+++.+.+
T Consensus 28 pnp~L~~~~~~-l~--~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 28 PNEFLVKHFSK-LN--INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHH
Confidence 45556555433 44 4567899999999999999999986 789999999999999866
No 177
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.51 E-value=0.00023 Score=68.67 Aligned_cols=57 Identities=19% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
|++||++-|=||..+..+|..+ . .+|++||.|..+++.|++|++.+|+. ..+++|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A-~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~ 274 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-A-SEVTSVDLSKRALEWARENAELNGLD-GDRHRFIV 274 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-C-CceEEEeccHHHHHHHHHHHHhcCCC-ccceeeeh
Confidence 9999999999999999988764 3 49999999999999999999999986 35566664
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.49 E-value=0.00026 Score=67.06 Aligned_cols=68 Identities=18% Similarity=0.145 Sum_probs=61.2
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcc
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI 245 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i 245 (255)
...|.+...+.+... +++|+.|||==||||.+...+...+ .+++|.|++..|++-|+.|++..+++..
T Consensus 180 s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 180 SMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred CcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 357888888888888 9999999999999999999988775 8999999999999999999999986543
No 179
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.47 E-value=0.00071 Score=69.54 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=60.2
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhC-------------------------------------
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG------------------------------------- 215 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~g------------------------------------- 215 (255)
...+.+.+.|+.... +.+++..++|-+||+|.+.+..+....
T Consensus 172 pl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 172 PLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 357778888887665 236788999999999999988876420
Q ss_pred ----CCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 216 ----ISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 216 ----p~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
...+++|+|+++.+++.|++|+..+|+. +.++|.+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~--~~i~~~~ 289 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVA--ELITFEV 289 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCC--cceEEEe
Confidence 1136999999999999999999999986 4565543
No 180
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.42 E-value=0.001 Score=61.19 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=61.6
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
.|....+-.........|. ++++++|||+++++|.-+..++...+..+.|++.|+++..+...++++++.|+.+
T Consensus 64 ~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~ 137 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN 137 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS
T ss_pred CCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce
Confidence 3544445444455566677 8999999999999999999999998767999999999999999999999999864
No 181
>PLN02366 spermidine synthase
Probab=97.42 E-value=0.00092 Score=62.42 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++||+||||.|..+..+++. .+..+|+.+|+++++++.|++.+...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~ 138 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL 138 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh
Confidence 46789999999999999999876 33468999999999999999998754
No 182
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00058 Score=61.24 Aligned_cols=49 Identities=24% Similarity=0.182 Sum_probs=45.8
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
-.+||||||.|...+.+|+. .|+..++|||+....+..|.+.+.+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~ 98 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLK 98 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCC
Confidence 47999999999999999998 48899999999999999999999999974
No 183
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.36 E-value=0.0007 Score=62.05 Aligned_cols=73 Identities=26% Similarity=0.285 Sum_probs=55.3
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh------CCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV------GISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~------gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
.|+..+.+.+...|.+.+. ..++.+|+|-+||+|.+...+.+.. .+..+++|+|+++.++..|+-++.-.+.
T Consensus 25 ~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp CGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred cceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 3566666778888889888 8889999999999999998887642 2348999999999999999998876664
Q ss_pred C
Q psy7843 243 T 243 (255)
Q Consensus 243 ~ 243 (255)
.
T Consensus 103 ~ 103 (311)
T PF02384_consen 103 D 103 (311)
T ss_dssp H
T ss_pred c
Confidence 3
No 184
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.001 Score=63.82 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhC---C----------------------------C
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG---I----------------------------S 217 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~g---p----------------------------~ 217 (255)
.+.....+.+.+.|+.... .+++..++|==||||.+++..|.+.. | .
T Consensus 170 ~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 170 DGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred CCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 3444567778888888777 77888999999999999999888751 1 1
Q ss_pred e-------EEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 218 G-------KVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 218 ~-------~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
+ .++|+|+|+.+++.|+.|..++|+. +.|+|.+-+
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~--d~I~f~~~d 289 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAAGVG--DLIEFKQAD 289 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhcCCC--ceEEEEEcc
Confidence 1 3779999999999999999999997 788887754
No 185
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.34 E-value=0.0011 Score=61.32 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=56.0
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
|-.+-+.....++.+.. .+++|||+-|=||.+++.++.. |. .+|++||.|..+++.|++|++.++++ ..+++
T Consensus 106 GlFlDqR~nR~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~ 177 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGLD-LDRHR 177 (286)
T ss_dssp SS-GGGHHHHHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-C-CTCEE
T ss_pred eEcHHHHhhHHHHHHHc-----CCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ccceE
Confidence 33445666666555433 4889999999999999987764 43 58999999999999999999999975 46788
Q ss_pred EEEEe
Q psy7843 250 FYEII 254 (255)
Q Consensus 250 f~~i~ 254 (255)
|+.-+
T Consensus 178 ~~~~D 182 (286)
T PF10672_consen 178 FIQGD 182 (286)
T ss_dssp EEES-
T ss_pred EEecC
Confidence 77543
No 186
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.33 E-value=0.00063 Score=61.78 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
..+++||+||||+|..+..+++.. +..+|+++|+++++++.|++++...
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhh
Confidence 345699999999999998887764 3478999999999999999988654
No 187
>KOG3010|consensus
Probab=97.30 E-value=0.00036 Score=63.32 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=37.7
Q ss_pred CCCCC-EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 190 LKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 190 l~~g~-rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
..+++ .++|+|||+|..+..++... .+|+|+|+|+.|++.|++..
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCC
Confidence 44454 79999999997778888887 78999999999999987653
No 188
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00091 Score=63.50 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp-~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
.|....|-.........|+ +++|++|||+++++|.=|..++++... ...|+++|+++..+...++|++++|+.+
T Consensus 135 ~G~~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 135 EGLIYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred ceEEEEcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 3444455445555567788 999999999999999999999998843 2456999999999999999999999875
No 189
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0042 Score=54.31 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=60.0
Q ss_pred cccCCccccCCc--ccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 160 HYDYPIDLGYGT--WMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 160 Y~d~~~~~g~g~--~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
|..+.+++..+. .-+.-.+...+-..+...--.|.++||+-+|||.+++..+.+. . .+++.||.|.+++...++|+
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A-~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-A-ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-C-ceEEEEecCHHHHHHHHHHH
Confidence 445555554432 2234445555566665211368899999999999999887764 3 79999999999999999999
Q ss_pred HHhCCC
Q psy7843 238 KAKAET 243 (255)
Q Consensus 238 ~~~gv~ 243 (255)
+.++..
T Consensus 87 ~~l~~~ 92 (187)
T COG0742 87 KALGLE 92 (187)
T ss_pred HHhCCc
Confidence 999864
No 190
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.21 E-value=0.0013 Score=56.93 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=53.8
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+++.+.++|....+ .+.|.-|||+|.|||.+|..+.+..-+...+++||.|++.+....+....
T Consensus 32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence 56678888998889 88999999999999999977666554558899999999999988876653
No 191
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0011 Score=62.88 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
..+|.+|+|+-+|-|++++.+|+... .+|+++|++|.+++..++|++.+++.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~ 238 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEG 238 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccc
Confidence 45799999999999999999999863 339999999999999999999999873
No 192
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.17 E-value=0.002 Score=60.05 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=40.7
Q ss_pred CCEEEEEcCCccHHHHHH-HHHhCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCccccEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLF-GAMVGISGKVYTIEHIPELLEAARKRVKAK-AETYIKRINFYE 252 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~L-A~~~gp~~~V~gIDis~~~le~Ar~nl~~~-gv~~i~~I~f~~ 252 (255)
.-++||||||.-++=..| ++..+ .+++|.|+++..++.|+++++++ ++. .+|++++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~--~~I~l~~ 160 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLE--SRIELRK 160 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T--TTEEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccc--cceEEEE
Confidence 347999999999775444 45443 89999999999999999999999 776 6777654
No 193
>PRK03612 spermidine synthase; Provisional
Probab=97.13 E-value=0.0012 Score=65.74 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+++++|||||||+|..+..+++. ++..+|+++|+|+++++.|+++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~ 340 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTS 340 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhC
Confidence 46789999999999999988875 3336999999999999999984
No 194
>KOG1500|consensus
Probab=97.05 E-value=0.002 Score=61.40 Aligned_cols=54 Identities=33% Similarity=0.454 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f 250 (255)
.++.|||+|||+|.++...++.+ . .+|++||.| +|.+.|++.++.+.+. ++|..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A-~~vYAvEAS-~MAqyA~~Lv~~N~~~--~rItV 230 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-A-KKVYAVEAS-EMAQYARKLVASNNLA--DRITV 230 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-c-ceEEEEehh-HHHHHHHHHHhcCCcc--ceEEE
Confidence 57889999999999998888774 5 799999966 6999999999988665 56554
No 195
>PRK01581 speE spermidine synthase; Validated
Probab=97.05 E-value=0.0013 Score=63.06 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
...+.+||+||||.|+.+..+.+.. +..+|++||+|+++++.|++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHh
Confidence 3456799999999999888887753 44799999999999999996
No 196
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.04 E-value=0.0022 Score=63.50 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=57.7
Q ss_pred CCcccCcHHHHHHHHHHHhccCC-----CCCEEEEEcCCccHHHHHHHHHhC-------CCeEEEEEeCCHHHHHHHHHH
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLK-----YGDKVLEIGTGSGYLTTLFGAMVG-------ISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~-----~g~rVLDIGcGtG~~aa~LA~~~g-------p~~~V~gIDis~~~le~Ar~n 236 (255)
.|+..+.+.++..|++.+..... ...+|||.|||+|.+.+.++.... -...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 46777888899999887742111 345899999999999998887652 125789999999999999999
Q ss_pred HHHhC
Q psy7843 237 VKAKA 241 (255)
Q Consensus 237 l~~~g 241 (255)
+...+
T Consensus 83 l~~~~ 87 (524)
T TIGR02987 83 LGEFA 87 (524)
T ss_pred HhhcC
Confidence 88775
No 197
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.94 E-value=0.0026 Score=62.36 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=44.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
+..|||+|||+|-++...++.+ +...+|++||.++.++...++++++++.. ++|++++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~--~~V~vi~~ 248 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG--DKVTVIHG 248 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT--TTEEEEES
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC--CeEEEEeC
Confidence 4679999999999986665542 22369999999999998888888888765 56777653
No 198
>KOG2730|consensus
Probab=96.91 E-value=0.0011 Score=59.76 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
....|+|.-||.|..++-.+..+ ..|++||+||.-+..|+.|++-.|+. ++|+|++=+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD 151 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGD 151 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC--ceeEEEech
Confidence 56789999999999999999887 68999999999999999999999998 599998744
No 199
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.77 E-value=0.0078 Score=56.29 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.|-+...+++.|. ++++...+|.--|-|..+..+...+++.++++|+|.|+.+++.|++++...+ .+++|++
T Consensus 8 ipVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~ 79 (314)
T COG0275 8 IPVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVH 79 (314)
T ss_pred cchHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEe
Confidence 4567888999999 9999999999999999998888888777899999999999999999998765 4565544
No 200
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.77 E-value=0.0032 Score=62.45 Aligned_cols=52 Identities=19% Similarity=0.032 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
.+..+||||||.|.+++.+|+.. |+..++|||++...+..|.++..+.++.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N 398 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN 398 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe
Confidence 45689999999999999999985 77999999999999999998888887653
No 201
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.72 E-value=0.0029 Score=59.67 Aligned_cols=47 Identities=28% Similarity=0.253 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++.+|||||||-|....-+.+. +. .+++|+|++.+.++.|+++.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~ 108 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQL 108 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHh
Confidence 7889999999988877666654 33 79999999999999999999543
No 202
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.66 E-value=0.0083 Score=57.56 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=43.8
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
-+|||+.||+|..++.++...+.-.+|+++|+++++++.+++|++.+++.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE 95 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 48999999999999999987421268999999999999999999988764
No 203
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.65 E-value=0.0025 Score=59.75 Aligned_cols=71 Identities=28% Similarity=0.300 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.|-+...+++.|. ++++..++|.--|.|.-+..+.+..++ ++|+|+|.|+++++.|+++++... +++.|++
T Consensus 5 ~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~----~r~~~~~ 75 (310)
T PF01795_consen 5 IPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD----DRFIFIH 75 (310)
T ss_dssp --TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC----TTEEEEE
T ss_pred ecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc----ceEEEEe
Confidence 3567788999999 999999999999999999999888755 999999999999999998877542 4555543
No 204
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.64 E-value=0.0027 Score=56.20 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=42.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.+.+.|+|+|||.++...|+.. .+|++||.+|...+.|.+|+.-.|..
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~ 80 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV 80 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc
Confidence 4789999999999999999886 79999999999999999998666654
No 205
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.63 E-value=0.007 Score=53.44 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=45.9
Q ss_pred HHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 181 ~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.+....+ ..+..+|+|||+|+|..+..+++.. |+.+++.+|. |+.++.+++ .++|+|+.
T Consensus 91 ~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~ 149 (241)
T PF00891_consen 91 ILLEAFD--FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---------ADRVEFVP 149 (241)
T ss_dssp HHHHHST--TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---------TTTEEEEE
T ss_pred hhhcccc--ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---------cccccccc
Confidence 3445555 6677899999999999999999997 7799999998 888888887 15676654
No 206
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.59 E-value=0.01 Score=51.60 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=51.9
Q ss_pred HHHHHHHh--ccCCCCC-EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 180 CLVLELLS--GHLKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 180 ~~~le~L~--~~l~~g~-rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
.++++.+. .++.... +++|||+|.|.=++.++-.. |+.+++.+|....-+...+.-...+++. +++.++
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~---nv~v~~ 104 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLS---NVEVIN 104 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-S---SEEEEE
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCC---CEEEEE
Confidence 34555543 1123333 89999999999999999876 7789999999999999999999999986 455443
No 207
>PRK10742 putative methyltransferase; Provisional
Probab=96.56 E-value=0.012 Score=53.73 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=49.8
Q ss_pred HHHHHHHhccCCCCC--EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 180 CLVLELLSGHLKYGD--KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 180 ~~~le~L~~~l~~g~--rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
..+.+.+. +++|. +|||+-+|+|..+..++.++ ++|+++|.++......+.++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHh
Confidence 34566777 88888 89999999999999999885 78999999999999999999985
No 208
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.51 E-value=0.0062 Score=53.95 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=49.6
Q ss_pred HHHHHhccCCCCC-EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccc
Q psy7843 182 VLELLSGHLKYGD-KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246 (255)
Q Consensus 182 ~le~L~~~l~~g~-rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~ 246 (255)
+++.|.+++.+.. +|||||||||--+..+|+.+ |.-+-.--|.++......+..++..++.|+.
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~ 78 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR 78 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccC
Confidence 3444443344444 59999999999999999998 6577888999999988888888888876544
No 209
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.47 E-value=0.009 Score=53.71 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHh-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHH
Q psy7843 175 PPYQHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 175 ~P~i~~~~le~L~-~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~A 233 (255)
+..+.+.++.-++ -.+++|.+||-+|+.+|.....++..+++++.|++||.++......
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH
Confidence 4445555544433 2378999999999999999999999999899999999999554333
No 210
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.003 Score=55.92 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=45.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.-.|++|||+|+|+|.-++..++.+ . ..|++.|+++......+-|.+.+|+.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A-~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-A-AEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-h-HHHHhcCCChHHHHHhhcchhhccce
Confidence 3468999999999999999888875 4 68999999999999999999999864
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.41 E-value=0.012 Score=53.79 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=40.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+.+|||+|||+|..+..+....+...+++.+|.|+.|++.++..++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4568999999999877666666654478999999999999999877654
No 212
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.39 E-value=0.0062 Score=54.72 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC-CeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp-~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+-+++|=+||+||+...++-+-++ -..|+|-|+++++++.|++|+..+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 4458999999999999887765422 267999999999999999999754
No 213
>KOG1501|consensus
Probab=96.38 E-value=0.006 Score=59.85 Aligned_cols=53 Identities=28% Similarity=0.385 Sum_probs=46.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
.|||||+|||.++..+++.+ . ..|+++|.-..|.+.||+-..++|.+ ++|+.+
T Consensus 69 ~vLdigtGTGLLSmMAvrag-a-D~vtA~EvfkPM~d~arkI~~kng~S--dkI~vI 121 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-A-DSVTACEVFKPMVDLARKIMHKNGMS--DKINVI 121 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-C-CeEEeehhhchHHHHHHHHHhcCCCc--cceeee
Confidence 59999999999999988875 3 46999999999999999999999987 566654
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.26 E-value=0.02 Score=53.88 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=42.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC---CCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVG---ISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~g---p~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+.++..++|+|||+|.-+..|.+... ...+.++||+|.++++.+.+++....
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~ 128 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN 128 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc
Confidence 55777999999999999877766552 23579999999999999999998333
No 215
>PHA01634 hypothetical protein
Probab=96.22 E-value=0.012 Score=49.13 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
.+++|+|||.+.|..++.++... + .+|+++|.++...+..+++++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-A-K~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-A-SFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-c-cEEEEeccCHHHHHHHHHHhhhhee
Confidence 57899999999999999998874 4 6899999999999999999987643
No 216
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.20 E-value=0.019 Score=52.41 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEE
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f 250 (255)
..+.+.+..++.+..+|+|||||-==+++.+.... ++..++|+|++..+++..+..+..++.. .++.+
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v 160 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARV 160 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEE
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeE
Confidence 33444454445668899999999988888776653 5589999999999999999999999875 44444
No 217
>KOG4589|consensus
Probab=96.16 E-value=0.0079 Score=53.14 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis 226 (255)
++|+++|||+||.+|.-+-..-+.++|++.|.|||+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 6799999999999999999999999999999999964
No 218
>PRK11524 putative methyltransferase; Provisional
Probab=96.16 E-value=0.019 Score=52.57 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+..+++... -.+|+.|||--||||..+....++. .+.+|+|++++.++.|++++..
T Consensus 197 L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 344444433 3689999999999999887766654 7899999999999999999864
No 219
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.07 E-value=0.0093 Score=50.35 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 228 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~ 228 (255)
++.+|||+||++|..+..+.+..++.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 3489999999999999999988756699999998865
No 220
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.04 E-value=0.024 Score=48.23 Aligned_cols=54 Identities=24% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 176 PYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 176 P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+..+++... -.+|+.|||--||||..+....++. .+.+|+|++++.++.|++
T Consensus 178 ~~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 34555555443 4689999999999999887766654 789999999999999874
No 221
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.98 E-value=0.016 Score=53.11 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=46.7
Q ss_pred cCCcc-cCcHHHHHHHHHHHhccC---CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 168 GYGTW-MEPPYQHCLVLELLSGHL---KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 168 g~g~~-is~P~i~~~~le~L~~~l---~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
+.|.. +.+....+.++..-.... ....++||||+|.|..|..++..+ .+|++.|.|+.|..+ +++.|..
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~r----L~~kg~~ 138 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWR----LSKKGFT 138 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHH----HHhCCCe
Confidence 34443 345455555554331001 145689999999999999999998 789999999999554 4444543
No 222
>PLN02823 spermine synthase
Probab=95.81 E-value=0.021 Score=54.01 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+++||.||+|.|..+..+.+.. +..+|+.||+++++++.|++.+..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~ 149 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTV 149 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhccc
Confidence 56799999999999998887753 337899999999999999998764
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.80 E-value=0.021 Score=50.98 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=45.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
+.+++|||+|.|.=++.+|-. -|+.+|+-+|....-+...+.-.++++++|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~n 118 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLEN 118 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCC
Confidence 689999999999999999855 477889999999999999999999999864
No 224
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.61 E-value=0.025 Score=50.72 Aligned_cols=59 Identities=25% Similarity=0.385 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~ 251 (255)
++.+.+++||||=-+|+++.|.+. ++...+++.|+++..++.|.+++.+.++. ++|+..
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~--~~i~vr 72 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS--ERIDVR 72 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc--ceEEEe
Confidence 446777999999999999999987 47689999999999999999999999875 555543
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.018 Score=51.04 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=35.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
++++.+|+|||+.+|.-+-.+++.+++.++|+|+|+.|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 67899999999999999999999998878899999886
No 226
>PRK13699 putative methylase; Provisional
Probab=95.48 E-value=0.055 Score=48.28 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
-.+|+.|||--||||..+....+.. .+.+|+|++++..+.|.+++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHHHH
Confidence 4689999999999999887766653 689999999999999999987653
No 227
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.34 E-value=0.049 Score=39.91 Aligned_cols=42 Identities=38% Similarity=0.627 Sum_probs=31.8
Q ss_pred EEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 196 VLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 196 VLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
++|+|||+|..+ .+++.......++++|+++.++..++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE 93 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh
Confidence 999999999987 445544221389999999999999665543
No 228
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.30 E-value=0.012 Score=45.29 Aligned_cols=53 Identities=34% Similarity=0.566 Sum_probs=11.0
Q ss_pred EEEcCCccHHHHHHHHHhCCCe--EEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 197 LEIGTGSGYLTTLFGAMVGISG--KVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 197 LDIGcGtG~~aa~LA~~~gp~~--~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
|||||..|..++.+++...+.+ +++++|..+. .+.+++.+++.++. .++++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~--~~~~~~~ 55 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS--DRVEFIQ 55 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC--CeEEEEE
Confidence 6999999999999988764444 7999999997 44555555555554 3465543
No 229
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.24 E-value=0.024 Score=54.07 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
+.+|.++|||||++|..|-.|.+.. .+|+|||..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~ 243 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP 243 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh
Confidence 4689999999999999999999885 7999999554
No 230
>KOG4300|consensus
Probab=95.13 E-value=0.039 Score=49.54 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=37.6
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
.|||+|||||..=-..-- .|..+|+.+|.++.|-+.|.+.+++...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~ 124 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP 124 (252)
T ss_pred ceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC
Confidence 479999999987655421 2558999999999999999999988744
No 231
>KOG1122|consensus
Probab=95.12 E-value=0.04 Score=53.71 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=54.2
Q ss_pred HHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
..|+ +++|.||||+++.+|.-|..+|.+....+.|+|.|.+...+...+.|+.++|+.+
T Consensus 235 ~aL~--Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n 293 (460)
T KOG1122|consen 235 MALD--PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN 293 (460)
T ss_pred eecC--CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc
Confidence 4467 8999999999999999999999988778999999999999999999999999864
No 232
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.56 E-value=0.013 Score=53.43 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=42.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
++.|.+|||.++|-||.++...+.. . .+|+++|.++..++.|.-|--..++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A-~~VitvEkdp~VLeLa~lNPwSr~l 182 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-A-IHVITVEKDPNVLELAKLNPWSREL 182 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-C-cEEEEEeeCCCeEEeeccCCCCccc
Confidence 6679999999999999999988875 2 3999999999999998766444443
No 233
>KOG4058|consensus
Probab=94.49 E-value=0.06 Score=46.15 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 178 i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.++.++..+. -.+..+.+|+|+|-|.+.+..++.+ . -.-+|+|+++-++..+|-..-+.|+.
T Consensus 60 Qv~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~-~~a~GvELNpwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 60 QVENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-L-RPAVGVELNPWLVAYSRLHAWRAGCA 121 (199)
T ss_pred HHHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-C-CcCCceeccHHHHHHHHHHHHHHhcc
Confidence 4555666666 5666789999999999998888764 2 46899999999999999888777775
No 234
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.21 E-value=0.18 Score=46.67 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=42.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++||-||-|.|..+..+.+.. +-.+++.||+++..++.+|+.+....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcc
Confidence 699999999999999999885 45899999999999999999987654
No 235
>KOG2361|consensus
Probab=94.18 E-value=0.036 Score=50.59 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=38.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCC--eEEEEEeCCHHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGIS--GKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~--~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+|||||||.|-....+.+-. ++ -.|++.|.|+.+++..+++...
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhcccc
Confidence 379999999999999888764 54 7899999999999999887543
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.17 E-value=0.23 Score=45.99 Aligned_cols=59 Identities=29% Similarity=0.345 Sum_probs=36.7
Q ss_pred CCEEEEEcCCccHH-HHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH-HhCCCccccEEEEEE
Q psy7843 193 GDKVLEIGTGSGYL-TTLFGAMVGISGKVYTIEHIPELLEAARKRVK-AKAETYIKRINFYEI 253 (255)
Q Consensus 193 g~rVLDIGcGtG~~-aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~-~~gv~~i~~I~f~~i 253 (255)
+++|+=||||+==+ ++.+++..++...|+++|+|+++++.|++-++ ..++. .+++|+.-
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~--~~m~f~~~ 181 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS--KRMSFITA 181 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc--CCeEEEec
Confidence 35999999996544 46667665566789999999999999999888 45554 56777653
No 237
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.11 E-value=0.5 Score=44.36 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp-~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~ 252 (255)
..-+||||.||.|...+-+....+. ..+|.-.|.++..++.+++.+++.|+. +.++|.+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~--~i~~f~~ 194 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE--DIARFEQ 194 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc--cceEEEe
Confidence 4568999999999998777666532 268999999999999999999999987 3346654
No 238
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.71 Score=44.40 Aligned_cols=103 Identities=23% Similarity=0.264 Sum_probs=68.7
Q ss_pred hCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccccC-CcccCcHHHHHHHH--------HHHhccCCC-CCEEEE
Q psy7843 129 GKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGY-GTWMEPPYQHCLVL--------ELLSGHLKY-GDKVLE 198 (255)
Q Consensus 129 ~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~-g~~is~P~i~~~~l--------e~L~~~l~~-g~rVLD 198 (255)
..|.|+=.+..+..+.-|.. -|.....+++. |..++.|++.+..- +.+.+...| .-.++|
T Consensus 14 ~~g~i~f~~fM~~~L~~p~~----------GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvE 83 (370)
T COG1565 14 QGGPISFSDFMELALYDPEH----------GYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVE 83 (370)
T ss_pred cCCCccHHHHHHHHHcCCCC----------cccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 34566666666665555554 33334555653 67778777665443 333322233 346999
Q ss_pred EcCCccHHHHHHHHHh---CC----CeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 199 IGTGSGYLTTLFGAMV---GI----SGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 199 IGcGtG~~aa~LA~~~---gp----~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
||.|.|.++.-+.+.. .| ..++.-||.|+++.+.=+++++...
T Consensus 84 iGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 84 IGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 9999999997665543 22 3789999999999999999988764
No 239
>KOG0024|consensus
Probab=93.93 E-value=0.16 Score=48.17 Aligned_cols=45 Identities=38% Similarity=0.580 Sum_probs=40.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+++|++||=+|+|+ |..+...|+..|. .+|+.+|+++..++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 78999999999997 7777888888877 799999999999999987
No 240
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.87 E-value=0.094 Score=46.60 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=40.0
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
+..|.....+.+.+- -.+++.|+|+|.-.|..++.+|..+ ++.++|+|||++....... ..+..... .+|+
T Consensus 15 ~q~P~Dm~~~qeli~--~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~--~rI~ 88 (206)
T PF04989_consen 15 IQYPQDMVAYQELIW--ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS--PRIT 88 (206)
T ss_dssp SS-HHHHHHHHHHHH--HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEE
T ss_pred hcCHHHHHHHHHHHH--HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc--CceE
Confidence 456666666666665 3346799999999999998887643 5669999999964433222 11222222 5677
Q ss_pred EEE
Q psy7843 250 FYE 252 (255)
Q Consensus 250 f~~ 252 (255)
|++
T Consensus 89 ~i~ 91 (206)
T PF04989_consen 89 FIQ 91 (206)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 241
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.66 E-value=0.26 Score=48.89 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=62.5
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCC---CeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp---~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
|+..+...+...|.+.+. +.+..+|+|-.||+|......++.++. +..++|.|+++.....|+.|+--+|+.
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 677777788888889888 788889999999999999888877743 267999999999999999999988876
No 242
>KOG3115|consensus
Probab=93.51 E-value=0.073 Score=47.69 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=43.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
--+.|||||=|.+...|+.+. |+.-+.|+||.-..-+..++++.+++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHh
Confidence 358999999999999999997 77899999999999999999998876
No 243
>KOG1975|consensus
Probab=93.48 E-value=0.13 Score=48.89 Aligned_cols=49 Identities=31% Similarity=0.391 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++.++|+|||-|.-.+-+-+.. - +.++|+||.+..++.|+++.+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I-~~~igiDIAevSI~qa~~RYrdm 163 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-I-GEYIGIDIAEVSINQARKRYRDM 163 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-c-cceEeeehhhccHHHHHHHHHHH
Confidence 5789999999999999998886653 3 78999999999999999988754
No 244
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=93.39 E-value=0.19 Score=45.34 Aligned_cols=49 Identities=27% Similarity=0.229 Sum_probs=40.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++||=||-|.|..+..+.+.. +..+|+.||+|+..++.|++.+...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~ 123 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEF 123 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhh
Confidence 468899999999999999988764 3479999999999999999987764
No 245
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.08 E-value=0.26 Score=44.56 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=37.0
Q ss_pred HHHHHHhccCCCCC--EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 181 LVLELLSGHLKYGD--KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 181 ~~le~L~~~l~~g~--rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.++..+. ++++. +|||.-+|-|.-+..+|..+ ++|+++|.||-+....+.-+++
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r 119 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKR 119 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHH
Confidence 3455566 67664 89999999999999999764 7899999999987777665544
No 246
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.87 E-value=0.47 Score=43.73 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCEEEEEcCCccH----HHHHHHHHhC----CCeEEEEEeCCHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGY----LTTLFGAMVG----ISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 193 g~rVLDIGcGtG~----~aa~LA~~~g----p~~~V~gIDis~~~le~Ar~ 235 (255)
.-+||.+||+||- ++..|.+..+ ..-+|+|.|+|..+++.|++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4589999999994 4444455442 25789999999999999975
No 247
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=92.44 E-value=0.19 Score=44.05 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCccHHH----HHHHHHh----CCCeEEEEEeCCHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLT----TLFGAMV----GISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~a----a~LA~~~----gp~~~V~gIDis~~~le~Ar~ 235 (255)
+.-+||.+||+||.=+ ..+.... +-.-+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 3458999999999643 3333311 113689999999999999976
No 248
>KOG2651|consensus
Probab=92.40 E-value=0.55 Score=45.68 Aligned_cols=45 Identities=29% Similarity=0.373 Sum_probs=38.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
.+-+.|+|+|.|.|+++..++-..| -.|.+||-|....++|++.-
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHHHH
Confidence 4567899999999999999987765 78999999988888886643
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.15 E-value=0.38 Score=43.06 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHh-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 175 PPYQHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 175 ~P~i~~~~le~L~-~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
+..+.+.++.-|+ -.+++|++||=+|+.+|.....++..++ ++.+++||.++......-..+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a 120 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVA 120 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHH
Confidence 3445566665554 2378999999999999999999999996 699999999998655444433
No 250
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.57 E-value=0.62 Score=37.56 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.8
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCeEEEEEeCCHHHHHHHHHH--HHHh
Q psy7843 198 EIGTGSG--YLTTLFG-AMVGISGKVYTIEHIPELLEAARKR--VKAK 240 (255)
Q Consensus 198 DIGcGtG--~~aa~LA-~~~gp~~~V~gIDis~~~le~Ar~n--l~~~ 240 (255)
|||+..| ..+..+. +..++.++|+++|.++...+..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6655543 2456778999999999999999999 5544
No 251
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.14 E-value=0.31 Score=39.31 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
+....+|||||+|.+.-.|.+.+ -+=.|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCcccccccc
Confidence 34579999999999998888765 5678888653
No 252
>KOG1227|consensus
Probab=90.74 E-value=0.082 Score=49.72 Aligned_cols=51 Identities=25% Similarity=0.406 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCccHHHH-HHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 192 YGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa-~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
.+..|.|+-+|.||++. .+.+. |. ..|+++|.+|..++..|++++.+++..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~~ 245 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVMD 245 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchHH
Confidence 56889999999999999 55544 44 789999999999999999999987753
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.71 E-value=0.34 Score=44.11 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA 232 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~ 232 (255)
.++..+||||+-||.+|-.+.+.. . .+|+|||..-..+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-A-k~VyavDVG~~Ql~~ 117 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-A-KHVYAVDVGYGQLHW 117 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-C-cEEEEEEccCCccCH
Confidence 478899999999999999998874 4 799999988755444
No 254
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.48 E-value=0.82 Score=43.03 Aligned_cols=47 Identities=28% Similarity=0.529 Sum_probs=39.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
.+++++|+=+|||+ |.+++.+++..|+ .+|+.+|.+++.++.|++..
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC
Confidence 44556999999997 7777888888876 79999999999999998854
No 255
>KOG3987|consensus
Probab=90.46 E-value=0.098 Score=47.14 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=47.4
Q ss_pred cCCcc-cCcHHHHHHHHHHHh-ccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 168 GYGTW-MEPPYQHCLVLELLS-GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 168 g~g~~-is~P~i~~~~le~L~-~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+.|.. +.++...++++..-. .+-+.+.++||+|+|.|-++..++..+ .+|++.|.|..|..+.++
T Consensus 86 grGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 86 GRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred ccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 34443 456777776664432 112345799999999999999999888 789999999998776644
No 256
>KOG1596|consensus
Probab=90.43 E-value=0.17 Score=46.52 Aligned_cols=41 Identities=37% Similarity=0.549 Sum_probs=38.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHH
Q psy7843 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 229 (255)
Q Consensus 189 ~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~ 229 (255)
|++||.+||=+|+++|+.....+..+||++-|++||.|+..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rs 193 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRS 193 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccc
Confidence 38999999999999999999999999999999999998753
No 257
>PRK00536 speE spermidine synthase; Provisional
Probab=90.06 E-value=0.66 Score=42.61 Aligned_cols=46 Identities=13% Similarity=-0.076 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
..+++||=||-|-|..+..+.+.- .+|+-||+|++.++.+++.+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHH
Confidence 456899999999999999999873 4999999999999999996654
No 258
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.05 E-value=0.53 Score=43.71 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=32.1
Q ss_pred CEEEEEcCCccHHH----HHHHHHhCC---CeEEEEEeCCHHHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLT----TLFGAMVGI---SGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 194 ~rVLDIGcGtG~~a----a~LA~~~gp---~~~V~gIDis~~~le~Ar~n 236 (255)
-+||..||.||-=+ ..+....+. +.+|+|+|+|+.+++.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999543 333332211 35799999999999999875
No 259
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.77 E-value=0.69 Score=41.39 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=37.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCC-------CeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGI-------SGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp-------~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
-+|+|+|+|+|.++.-+.+.... ..+++-||+|+.+.+.-++++...
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 58999999999999888776532 248999999999999998888763
No 260
>KOG2360|consensus
Probab=89.31 E-value=0.47 Score=45.97 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=61.7
Q ss_pred CcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcc
Q psy7843 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI 245 (255)
Q Consensus 170 g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i 245 (255)
|..+.+-.......+.|+ ..+|.+|+|+.|..|--|..++....+.+++.|.|.+++..+.-+.-+...|+..+
T Consensus 193 g~~ilqd~asclpA~ll~--p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~ 266 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLD--PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIV 266 (413)
T ss_pred CceEEechhhcchhhhcC--CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcc
Confidence 344445445555567778 88999999999999999999999887789999999999999999999999988643
No 261
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=89.25 E-value=0.32 Score=43.64 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=34.6
Q ss_pred CCEEEEEcCCccHHHHHH-HHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLF-GAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~L-A~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
..++||.|+|.|..|..+ .+.+ .+|--||..+..++.|++.+..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCC
T ss_pred cceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcc
Confidence 468999999999999644 5555 7899999999999999987665
No 262
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.04 E-value=1.3 Score=42.80 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 183 le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++.|+ +.++++||-|.+| |..++.+... +| .+|++||+++.-+...+=+++..
T Consensus 28 ~~aL~--i~~~d~vl~ItSa-G~N~L~yL~~-~P-~~I~aVDlNp~Q~aLleLKlAai 80 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSA-GCNALDYLLA-GP-KRIHAVDLNPAQNALLELKLAAI 80 (380)
T ss_pred HHHhC--CCCCCeEEEEccC-CchHHHHHhc-CC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence 45678 9999999999765 5555554433 46 89999999999888877666543
No 263
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.66 E-value=2.2 Score=39.35 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=37.8
Q ss_pred CEEEEEcCCccH--HHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 194 DKVLEIGTGSGY--LTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 194 ~rVLDIGcGtG~--~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
..+||||||--. .+-.+++...|+++|+-+|++|-.+..+|..+....- .+..+++-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~---g~t~~v~aD 129 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR---GRTAYVQAD 129 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT---SEEEEEE--
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC---ccEEEEeCC
Confidence 479999999653 4566777778999999999999999999999876542 235555543
No 264
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.52 E-value=1.6 Score=41.11 Aligned_cols=46 Identities=35% Similarity=0.577 Sum_probs=39.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+.++.+||.+|||+ |..++.+++..|. .+|++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 77899999999998 8899999998753 4699999999998888764
No 265
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.69 E-value=2.1 Score=41.29 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
.+-+|||.=+|||.-++..++..+...+|+.-|+|+++++..++|++.+++..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~ 101 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED 101 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC
Confidence 34589999999999999999985444789999999999999999999999873
No 266
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=87.25 E-value=1.5 Score=40.24 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHHh-CCC
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKAK-AET 243 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~~-gv~ 243 (255)
.+.-++||||.|.-++=-.+... +| .+.+|.|+|+..++.|+.++..+ ++.
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGLE 129 (292)
T ss_pred cCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcchh
Confidence 35568999999988876666443 33 78999999999999999999887 554
No 267
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.33 E-value=1.9 Score=39.53 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhC----CCeEEEEEeCCHHH
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG----ISGKVYTIEHIPEL 229 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~g----p~~~V~gIDis~~~ 229 (255)
+.++...+.+.-. +.+...++|.|||.|.++..+++... +...++.||.....
T Consensus 3 qsSli~~l~~~~l--l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R 59 (259)
T PF05206_consen 3 QSSLIGNLEQRGL--LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR 59 (259)
T ss_pred HHHHHHHHHHcCC--CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc
Confidence 3344555544433 67788999999999999999999872 23689999986543
No 268
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.00 E-value=0.94 Score=40.51 Aligned_cols=38 Identities=39% Similarity=0.679 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
+++|.+|+|+=.|.||.|..++..++|++.|+++=..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 88999999999999999999999999999999886443
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=85.51 E-value=1.9 Score=39.32 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=37.0
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+|+|+.||.|..+.-+.+. |- ..|.++|+++.+++..+.|...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC
Confidence 6899999999999888776 33 5789999999999999999754
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.27 E-value=2.2 Score=40.66 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
++||++|+=+|+| .|..++-+|+..+ ++|+++|.+++-.+.|++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 8899999998887 4566677788665 8999999999999998876
No 271
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.24 E-value=3.7 Score=36.77 Aligned_cols=48 Identities=31% Similarity=0.268 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
-.+++.|||-=+|+|.......+.. .+++|+|++++.++.+.+++...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence 6789999999999999887766654 68999999999999999999865
No 272
>KOG2078|consensus
Probab=84.36 E-value=0.75 Score=45.26 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.++|+.|.|+-||.|=.++.+++.. ++|++-|.++++++..+.|++.+.+.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc
Confidence 6799999999999999999999876 99999999999999999999887765
No 273
>KOG1098|consensus
Probab=84.25 E-value=0.99 Score=46.31 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=35.0
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 189 ~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
++++++.|||+||.+|.-.-.+++.++..+-|+|||+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 367899999999999999999999988888999999765
No 274
>KOG2198|consensus
Probab=83.32 E-value=2.6 Score=40.61 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHhccCCCCCEEEEEcCCccHHHHHHHHHhCC---CeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 185 LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 185 ~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp---~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
.|+ ++|+++|||+++.+|.-++.|.+.+-+ .+.|++=|.++..+...++.+.+....
T Consensus 150 ~L~--v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~ 209 (375)
T KOG2198|consen 150 ALG--VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP 209 (375)
T ss_pred hcc--cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc
Confidence 356 899999999999999999888776521 248999999999999988887665443
No 275
>KOG2920|consensus
Probab=83.15 E-value=0.94 Score=42.12 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELL 230 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~l 230 (255)
-.+++|||+|||+|.-.+.+.... . ..|...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-A-VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-c-ceeeeEecchhhe
Confidence 478999999999999998887764 2 6899999998877
No 276
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.04 E-value=4 Score=39.47 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
..+|+|.=+|||.-++.++...+. .+|+.-|++|++++.+++|++.+..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~ 101 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG 101 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc
Confidence 679999999999999999998754 3899999999999999999998833
No 277
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=80.91 E-value=6.9 Score=38.24 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
++...+||-+|-|-|-.+..+.+. +...+|+-+|.||+|++.++++.
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~ 333 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHAT 333 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhh
Confidence 355678999999999999988875 22489999999999999999544
No 278
>KOG3924|consensus
Probab=79.56 E-value=2.6 Score=41.04 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
..+.....+.+.+. +.+++...|+|+|.|.....++..++- ..-+|+|+.....+.|..+.
T Consensus 176 ~~~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~ 236 (419)
T KOG3924|consen 176 TQLEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNK 236 (419)
T ss_pred hhHHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHH
Confidence 36677788888999 999999999999999999998887643 56788998777666665443
No 279
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.14 E-value=7.3 Score=35.92 Aligned_cols=44 Identities=36% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=+|+|+ |..++.+++..| .+|++++.+++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 78899999999966 666677777765 579999999988877754
No 280
>KOG1709|consensus
Probab=78.84 E-value=14 Score=33.70 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCCCCccccccccCCccc---------cCCcccC--cHHHHHHHHHHHhcc
Q psy7843 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDL---------GYGTWME--PPYQHCLVLELLSGH 189 (255)
Q Consensus 121 ~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp~~~~~~aY~d~~~~~---------g~g~~is--~P~i~~~~le~L~~~ 189 (255)
.++-+.++..| +.++-++.++. +.-.|.......|....+++ +.+..+. +|-+.+.. +.+
T Consensus 28 ~rly~~lv~~g-v~Selll~~l~----rn~s~n~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A-~ai--- 98 (271)
T KOG1709|consen 28 SRLYRRLVEAG-VPSELLLFALG----RNESPNADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALA-EAI--- 98 (271)
T ss_pred HHHHHHHHHcC-Cchhhhhhccc----cccCccccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHH-HHH---
Confidence 33667777776 66666666542 22223233333333332222 1222222 33333221 222
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
..+|.+||++|-|-|.+...+.+. +| .+=+-||..++.+++.|..-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~g 144 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWG 144 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcc
Confidence 357899999999999999888765 56 45567999999998877653
No 281
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.50 E-value=4.7 Score=40.44 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..++++|+=+|||. |..++..++..| ++|+++|.+++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 35799999999997 556677787777 579999999999998876
No 282
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=78.06 E-value=5.8 Score=35.60 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=35.3
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+|+|+-||.|.+++-+.+.. - ..|.++|+++.+.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhccc
Confidence 68999999999999987764 2 578999999999999888873
No 283
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=78.01 E-value=7.9 Score=34.67 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=35.5
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||..|+| .|..++.+++..| .+|++++.+++..+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 6788999998876 4778888888775 679999999988877654
No 284
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=77.50 E-value=6.2 Score=35.32 Aligned_cols=59 Identities=25% Similarity=0.254 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHH
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~A 233 (255)
+..|.....+.+.+- -..++.|+|+|+-.|..++..|... |...+|+++|+|-..+..+
T Consensus 52 ~k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~ 113 (237)
T COG3510 52 IKSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA 113 (237)
T ss_pred cCCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh
Confidence 456777777777776 5567899999999999998877643 4447899999886654443
No 285
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.77 E-value=12 Score=32.04 Aligned_cols=44 Identities=36% Similarity=0.581 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||-.|+|+ |..++.+++..| .+|++++.+++..+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 47899999999996 667777777665 689999999887776643
No 286
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.59 E-value=7.6 Score=36.94 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=42.1
Q ss_pred HHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 185 LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 185 ~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+. +..|.+|.-||+|.-.....+++. | ++|..||+++.-++.-+-+++..
T Consensus 58 am~--~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 58 AMQ--LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HHh--cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 356 778999999999977677777764 4 89999999999998888777765
No 287
>KOG1269|consensus
Probab=76.03 E-value=3.2 Score=39.92 Aligned_cols=57 Identities=19% Similarity=0.120 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccE
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I 248 (255)
.+++.+++|+|||-|.....++...+ ..++|++.++.-+.++........+.+.+++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~ 164 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNF 164 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcce
Confidence 67888999999999999999987653 7899999999999999998888887644433
No 288
>KOG2782|consensus
Probab=75.70 E-value=3.1 Score=37.94 Aligned_cols=61 Identities=21% Similarity=0.168 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 175 ~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
-|.+...+++.+. +.+|...+|.--|.|.-+..+.+.. ++.+++++|.+|-+...|+-...
T Consensus 28 VPVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 28 VPVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 3456777888898 8999999999999999999998886 66899999999999888876553
No 289
>KOG3178|consensus
Probab=75.33 E-value=4.4 Score=38.71 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=41.0
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETY 244 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~ 244 (255)
...+|+|.|.|..+..+...+ .+|-+++.+...+..+++.+. .|+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~gV~~ 225 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PGVEH 225 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CCcce
Confidence 689999999999998888877 469999999999999999987 66654
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.19 E-value=12 Score=34.40 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..++++||=+||| .|..++.+++..|. .+|+++|.+++.++.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 5578999988875 24444556666553 379999999998888764
No 291
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=73.66 E-value=13 Score=34.17 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+++|++||=.|+| .|..++.+++..| .+|++++.+++..+.+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 7899999999975 3444455666665 579999999988776655
No 292
>KOG2940|consensus
Probab=73.50 E-value=6.3 Score=36.34 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
.-..++||||+-|++...+.... - .+++-+|-|..|++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-v-ekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-V-EKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-h-hheeeeecchHHHHHhhcc
Confidence 34579999999999998876542 2 7899999999999998754
No 293
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.39 E-value=13 Score=34.76 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|+ |..++.+|+..|. .+|+++|.+++..+.+++
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 78899999998753 4455566776652 379999999988887754
No 294
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=72.68 E-value=36 Score=31.10 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
-.|++||=+|=.--.. +.++.. ++..+|+.+|+|+.+++.-++..++.|+.
T Consensus 43 L~gk~il~lGDDDLtS-lA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~ 93 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTS-LALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP 93 (243)
T ss_dssp STT-EEEEES-TT-HH-HHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred ccCCEEEEEcCCcHHH-HHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence 3688999999544333 333333 34489999999999999999999999875
No 295
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=71.73 E-value=3.6 Score=41.16 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=17.2
Q ss_pred EEEEEcCCccHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAM 213 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~ 213 (255)
.+||+|||+|.+++.|..+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEeccceeehhHHHHhhC
Confidence 6999999999999998775
No 296
>KOG2793|consensus
Probab=71.40 E-value=7.4 Score=35.58 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 228 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~ 228 (255)
...+|||+|+|+|.-++.++...+ +.|+--|...-
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~ 120 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKV 120 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhh
Confidence 355799999999988888888653 56766664433
No 297
>KOG0022|consensus
Probab=70.97 E-value=11 Score=36.16 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=40.2
Q ss_pred HHHHHhccCCCCCEEEEEcCCccHHHH-HHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 182 VLELLSGHLKYGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 182 ~le~L~~~l~~g~rVLDIGcGtG~~aa-~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+....+ ++||+.|--.|+|.=.++. .-++..|. ++++|||++++-.+.|++
T Consensus 184 a~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 184 AWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhcc--cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHh
Confidence 445567 8999999999998755554 44666666 799999999999998875
No 298
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=69.66 E-value=15 Score=33.86 Aligned_cols=45 Identities=33% Similarity=0.417 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|. |..++.+++..|. .+|+++|.+++..+.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 78899999998753 4445566776652 359999999988887753
No 299
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=69.39 E-value=8.7 Score=34.55 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=23.6
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis 226 (255)
+..+++.+.. ..+...|-|+|||-+.++..+... .+|++.|+-
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLv 102 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLV 102 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC----ceEEEeecc
Confidence 3566777762 223468999999999998665322 356666654
No 300
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.02 E-value=16 Score=34.07 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|. |..++.+++..|. .+|+++|.+++..+.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH
Confidence 78899999888753 4444556666553 269999999998887754
No 301
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.44 E-value=32 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.++++|=.|+++|.-.....++.....+|+.++.+++-++...+.++..+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 55 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG 55 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 36788888875554443333333233689999999887776666665543
No 302
>PLN02740 Alcohol dehydrogenase-like
Probab=68.14 E-value=16 Score=34.32 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=+|+|+ |..++.+++..|. .+|+++|.+++.++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 78999999998752 3333445666542 369999999988887754
No 303
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=68.08 E-value=16 Score=33.71 Aligned_cols=44 Identities=23% Similarity=0.062 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
...+||-=|||.|.++-.+|+++ -.|.|.|.|--|+-..+--+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHc
Confidence 35689999999999999999985 789999999999877665544
No 304
>KOG0821|consensus
Probab=68.08 E-value=11 Score=34.53 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
..++..... .-..+.|.+||.|+|.++..+.... . .+...+|++...+.-.+...++.
T Consensus 39 T~KIvK~A~--~~~~~~v~eIgPgpggitR~il~a~-~-~RL~vVE~D~RFip~LQ~L~EAa 96 (326)
T KOG0821|consen 39 TDKIVKKAG--NLTNAYVYEIGPGPGGITRSILNAD-V-ARLLVVEKDTRFIPGLQMLSEAA 96 (326)
T ss_pred HHHHHHhcc--ccccceeEEecCCCCchhHHHHhcc-h-hheeeeeeccccChHHHHHhhcC
Confidence 344444444 4456789999999999998887653 3 68888999988887776655543
No 305
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=67.97 E-value=20 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
++++++||-.|+|. |..++.+++..|. .+|++++.+++..+.+++.
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc
Confidence 78899999998866 6666777777653 2499999998887766643
No 306
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.13 E-value=34 Score=29.63 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.++++|=.|+++|.-.....++.....+|+.++.+++.++...+.++..+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~ 57 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG 57 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 46789989987665444443333333689999999887777666665543
No 307
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.12 E-value=36 Score=29.34 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++++|=.|++. .++..+++.+ ....+|+.++.+++.++...+.+++.+
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 59 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG 59 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 477888888654 4454444432 233789999999887776666665544
No 308
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.93 E-value=7.4 Score=29.81 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCccHHHHHHHHHhCCCe-EEEEEeCCHHHHHHHHHH
Q psy7843 201 TGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKR 236 (255)
Q Consensus 201 cGtG~~aa~LA~~~gp~~-~V~gIDis~~~le~Ar~n 236 (255)
||.|..+..+++.+...+ +|+.+|.+++.++.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 667788888877663345 899999999998887654
No 309
>KOG2912|consensus
Probab=66.91 E-value=25 Score=33.82 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=38.2
Q ss_pred EEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 196 VLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 196 VLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
=+|||+|.-++=.++.... .+....++|+++-.+..|..|+.+++.+
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls 152 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS 152 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc
Confidence 3799998887776664432 2378999999999999999999999887
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=66.89 E-value=12 Score=36.56 Aligned_cols=44 Identities=20% Similarity=0.078 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+|++|+=+|+|+ |...+.+++..| ++|+.+|.++...+.|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 35799999999996 555566666655 589999999988777754
No 311
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=66.56 E-value=20 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCCCCEEEEEcCCccHHHH-HHHHHhCCCeEEEEEeCCH
Q psy7843 190 LKYGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa-~LA~~~gp~~~V~gIDis~ 227 (255)
+..+++||=|||-+||-.+ .++..++..+..+||-...
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 3445899999999999764 4555556667888887654
No 312
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.32 E-value=38 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++++|=.|++ |.++..+++.+ ....+|+.++.+++.++.+.+.+...
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~ 52 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL 52 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 36688888864 44444444432 22368999999987776666655543
No 313
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.29 E-value=15 Score=33.91 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAM-VGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+++|++||=+|||. |..++.+++. .+. .+|+++|.+++.++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh
Confidence 57899999999753 2223344553 322 589999999988888764
No 314
>PRK07035 short chain dehydrogenase; Provisional
Probab=64.78 E-value=42 Score=28.84 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++||=.|+++|.-.....++.....+|+.++.+++.++...+.+...+
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~ 56 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG 56 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 5678888877665544433333223689999999887776666665443
No 315
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=64.51 E-value=24 Score=31.43 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..++++||=+|+|+ |..++.+++..|. .+|+++|.+++..+.+++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 56899999998742 3344555666553 358999999888777654
No 316
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=64.43 E-value=24 Score=32.73 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+++|++||=.|+ |.|..++.+++..| .+|++++.+++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH
Confidence 789999999997 46777777888776 57999999988777665
No 317
>PRK07063 short chain dehydrogenase; Provisional
Probab=63.76 E-value=47 Score=28.76 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+++||=.|++.|.-.....++.....+|+.++.+++.++...+.+..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~ 53 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIAR 53 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 367889888765544333333333337899999998887777666654
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=62.53 E-value=20 Score=33.05 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeC---CHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEH---IPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDi---s~~~le~Ar 234 (255)
.+++++||=+|+|. |.+++.+++..| .+|++++. +++..+.++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH
Confidence 45789999999864 556666777765 57999987 566666654
No 319
>KOG1331|consensus
Probab=62.47 E-value=3.3 Score=38.70 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
.+..++|+|||.|..... .|...++|.|++...+..|++
T Consensus 45 ~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~ 83 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKR 83 (293)
T ss_pred CcceeeecccCCcccCcC-----CCcceeeecchhhhhcccccc
Confidence 488999999999986632 355789999999999888765
No 320
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=62.12 E-value=16 Score=32.09 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 179 ~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
...+.+.+. -.+..+++|.=||+|..+..+.+.. .+|+.-|+++..+...+..++.
T Consensus 9 ~~~I~~~ip--~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 9 AKWIIELIP--KNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp HHHHHHHS---S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHhc
Confidence 445555544 1167899999999999998876643 7899999999998888755544
No 321
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.07 E-value=32 Score=31.06 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||-.|+|. |..++.+++..| .+|+++..+++..+.++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHH
Confidence 78899999998774 777777888765 67999988888777664
No 322
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=61.61 E-value=32 Score=32.97 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=44.9
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh------CCCeEEEEEeC----CHHHHHHHHHHHHHh
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV------GISGKVYTIEH----IPELLEAARKRVKAK 240 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~------gp~~~V~gIDi----s~~~le~Ar~nl~~~ 240 (255)
..+++.+. -++.-+|+|+|.|.|..-..|.+.. +|.-++|||+. +...++.+.+++.+.
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 44566666 4455579999999999887776654 34568999999 888898888887664
No 323
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=60.77 E-value=24 Score=33.98 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=41.1
Q ss_pred HHHHHhccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 182 VLELLSGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 182 ~le~L~~~l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+++.++ +++|++|.=+|||. |..++.-|+..+. .++++||++++.++.|++.
T Consensus 177 v~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc
Confidence 455577 99999999999986 4444555666665 7999999999999998753
No 324
>KOG2671|consensus
Probab=60.47 E-value=8.5 Score=37.26 Aligned_cols=65 Identities=15% Similarity=0.048 Sum_probs=50.6
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHH-------HHHHHHHhCC
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEA-------ARKRVKAKAE 242 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~-------Ar~nl~~~gv 242 (255)
...+.+.-.+.+... ++||+-|.|=-.|||.+....|+.+ +.|+|.||+-.++.. .+.|+++.|.
T Consensus 191 SmDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~ 262 (421)
T KOG2671|consen 191 SMDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS 262 (421)
T ss_pred ccchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC
Confidence 334555555566666 8999999999999999998888875 899999999988873 3567777664
No 325
>KOG2352|consensus
Probab=59.83 E-value=5.2 Score=39.85 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+.++|=+|-|+|.+...+-... |..++++||++|++++.|++++..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhch
Confidence 45678999999999998887666 448999999999999999988754
No 326
>PRK07890 short chain dehydrogenase; Provisional
Probab=59.77 E-value=61 Score=27.83 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++++||=.|+++|. +..+++. .....+|+.++.+++-.+.....+...
T Consensus 4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~ 52 (258)
T PRK07890 4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL 52 (258)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 46788877765544 4444333 323368999999887766666555543
No 327
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=59.66 E-value=40 Score=33.39 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=52.1
Q ss_pred CCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhC---CCeEEEEEeCCHHHHHHHHHHHHHhCC
Q psy7843 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVG---ISGKVYTIEHIPELLEAARKRVKAKAE 242 (255)
Q Consensus 169 ~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~g---p~~~V~gIDis~~~le~Ar~nl~~~gv 242 (255)
.|+.-+...++..+.+.+.....|+..|.|..||+|.+.....+..+ ....++|-|..+.+...|+.++...+.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 34555556666766666661122678999999999998865443321 124699999999999999999766554
No 328
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.91 E-value=58 Score=28.39 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.++++|=.|++.|.-.....++.....+|+.++.+++.++...+.++..+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~ 58 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG 58 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC
Confidence 46788988887766544433333333789999999887777776666544
No 329
>PRK06949 short chain dehydrogenase; Provisional
Probab=58.28 E-value=73 Score=27.31 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+++||=.| |+|.++..+++.+ ....+|+.++.+++.++.....+...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~ 56 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE 56 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 467888888 4555555555443 23358999999988777666665443
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=58.02 E-value=32 Score=31.22 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=33.4
Q ss_pred HHHHhccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 183 LELLSGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 183 le~L~~~l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+..+. ++++++||=+|+|. |..++.+++..|. .+|++++.+++..+.+++
T Consensus 156 l~~~~--~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 156 LRRVG--VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA 206 (339)
T ss_pred HHhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 34455 78899999988642 3333445666553 239999999888777643
No 331
>PRK05854 short chain dehydrogenase; Provisional
Probab=58.02 E-value=73 Score=29.01 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEeC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEIIV 255 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~~ 255 (255)
.++++|=.|+++|.-.....++.....+|+.+..+++..+.+.+.+....-. .++.++..+|
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~--~~v~~~~~Dl 74 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPD--AKLSLRALDL 74 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCC--CceEEEEecC
Confidence 3678888887766544443333323378999999888777766666543211 2455655543
No 332
>PRK06914 short chain dehydrogenase; Provisional
Probab=57.87 E-value=66 Score=28.18 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=32.9
Q ss_pred CCEEEEEcCCccHHHHHHHH-HhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 193 GDKVLEIGTGSGYLTTLFGA-MVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~-~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
++++|=.|++.|. +..+++ +.....+|++++.+++..+...+.+...+.. .++.++..
T Consensus 3 ~k~~lItGasg~i-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~ 61 (280)
T PRK06914 3 KKIAIVTGASSGF-GLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQ--QNIKVQQL 61 (280)
T ss_pred CCEEEEECCCchH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC--CceeEEec
Confidence 4567878865544 444433 3333368999998887766655555444332 24554443
No 333
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=57.75 E-value=66 Score=27.60 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+.++++||=.|+ +|.++..+++.+ ....+|+.++.+++.++...+.+...+
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~ 60 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG 60 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC
Confidence 346788998895 555555554433 223689999999887776666665543
No 334
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=57.74 E-value=15 Score=33.66 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCccHHHH-HHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa-~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+|.++||||||+=..-+ .++..+ .+|+..|..+.-.+..++=++.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCC
Confidence 357789999999865543 333444 6899999999888877766554
No 335
>PRK08339 short chain dehydrogenase; Provisional
Probab=57.73 E-value=71 Score=28.10 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.++++|=.|++.|.-.....++.....+|+.++.+++.++...+.+..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 54 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKS 54 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 467888888776665444333333337899999998877777666654
No 336
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=57.73 E-value=15 Score=28.35 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.4
Q ss_pred CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 202 GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 202 GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
|.|..++.+++..| .+|+++|.+++..+.+++
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh
Confidence 45888999999887 899999999998888765
No 337
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=57.58 E-value=41 Score=30.31 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHhccCCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 184 ELLSGHLKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+... +++|++||=.|. |.|..++.+++..| .+|++++.+++..+.++
T Consensus 132 ~~~~--~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 132 EICG--VKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK 180 (325)
T ss_pred HHhC--CCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence 4455 789999998884 56777777888775 57999999988777664
No 338
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=57.30 E-value=38 Score=31.31 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|. |..++.+++..|. .+|++++.+++..+.+++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 78899999988631 2233445555542 379999999888777643
No 339
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.08 E-value=68 Score=27.70 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+++||=.|+++|.-.....++.....+|+.++.+++.++.....++..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~ 58 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL 58 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 3678999996655444333333333368888998888776665555443
No 340
>PRK07062 short chain dehydrogenase; Provisional
Probab=57.01 E-value=79 Score=27.40 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.++++|=.|++.|.-.....++.....+|+.++.+++.++.+.+.+..
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 54 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE 54 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 467888888766554433333322337899999998877766665544
No 341
>PRK09242 tropinone reductase; Provisional
Probab=56.81 E-value=73 Score=27.51 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++|=.|++.|.-.....++.....+|+.++.+++.++...+.+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~ 56 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEE 56 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 3678888887655444333333323368999999888777666666543
No 342
>PRK08703 short chain dehydrogenase; Provisional
Probab=56.73 E-value=74 Score=27.13 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++++||=.|++.|. +..+++.+ ....+|+.++.+++.++...+.+...
T Consensus 5 ~~k~vlItG~sggi-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~ 53 (239)
T PRK08703 5 SDKTILVTGASQGL-GEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA 53 (239)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc
Confidence 35788989965544 44444433 23368999999988776666655443
No 343
>PRK07814 short chain dehydrogenase; Provisional
Probab=56.69 E-value=74 Score=27.74 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+++++|=.|. +|.++..+++.+ ....+|+.++.+++.++...+.+..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~ 56 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA 56 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 4678888885 555555555433 2337899999998776666555544
No 344
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=56.54 E-value=50 Score=29.62 Aligned_cols=43 Identities=28% Similarity=0.439 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+.++++||-.|+| .|..++.+++..| .+|+.++.+++..+.++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 7888999999887 6666666777665 57999999988777663
No 345
>PRK05866 short chain dehydrogenase; Provisional
Probab=56.27 E-value=68 Score=28.90 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++||=.|+++|.-.....++.....+|+.++.+++.++...+.+...+
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~ 88 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG 88 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 4678888876555443332232233689999999887776666655433
No 346
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.16 E-value=11 Score=36.59 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
..+++||+|.|+|.....+-...+.-..++-+|.|+..-+...
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~ 155 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGD 155 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHH
Confidence 4567999999999988777666633356777888877655543
No 347
>PRK08862 short chain dehydrogenase; Provisional
Probab=55.96 E-value=62 Score=28.06 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++++|=.|++.|.-.....++.....+|+.++.+++.++...+.+...+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~ 53 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT 53 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 36788888888877544443333334788889988888877766665544
No 348
>PLN02780 ketoreductase/ oxidoreductase
Probab=55.50 E-value=77 Score=29.19 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.|+++|=.|+++|.-.....++.....+|+.++.+++.++...+.++.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~ 99 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS 99 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
Confidence 367888888766643333222222236788899988887776666654
No 349
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=55.47 E-value=80 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=29.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++++|=.|++ |.++..+++.+ ....+|+.++.+++......+.+...
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~ 50 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK 50 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc
Confidence 5678878864 44554544433 22358999999887776666655543
No 350
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=55.29 E-value=8.8 Score=37.28 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.2
Q ss_pred CCEEEEEcCCccHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGA 212 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~ 212 (255)
.-+|+|+|||+|.+|+.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45799999999998876643
No 351
>PRK07454 short chain dehydrogenase; Provisional
Probab=55.26 E-value=90 Score=26.56 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=30.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
...+++|=.|+ +|.++..+++.+ ....+|+.++.+++..+...+.++.
T Consensus 4 ~~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 52 (241)
T PRK07454 4 NSMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS 52 (241)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 34567888885 555555555543 2236899999998766665555544
No 352
>PRK07576 short chain dehydrogenase; Provisional
Probab=54.93 E-value=75 Score=27.84 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++++|=.|. +|.++..+++.+ ....+|+.++.+++-++...+.+...
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~ 56 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA 56 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4678888885 555555544433 23368999999887766655555543
No 353
>PLN02827 Alcohol dehydrogenase-like
Probab=54.81 E-value=44 Score=31.41 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|+ |..++.+++..|. ..|+++|.+++..+.|++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH
Confidence 78899999998642 3333445565552 368999998887776643
No 354
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=54.78 E-value=78 Score=27.27 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.+++||=.|+ +|.++..+++.+ ....+|+.++.+++.++...+.++..+
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~ 58 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG 58 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 4678998885 555565555543 233689999999887776666665443
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=54.53 E-value=50 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=+|+| .|..++.+++..|. .+|+++|.+++.++.+++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 7889999999864 23333445665552 279999999988877653
No 356
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.93 E-value=74 Score=27.85 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHH-hCC-CeEEEEEeCCHHH-HHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAM-VGI-SGKVYTIEHIPEL-LEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~-~gp-~~~V~gIDis~~~-le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
...+.+||=.|+++|.- ..+++. ... ..+|+.++.+++. ++.+.+.+...+. .+++++..+
T Consensus 5 ~~~~~~vlItGas~giG-~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~---~~v~~~~~D 68 (253)
T PRK07904 5 VGNPQTILLLGGTSEIG-LAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA---SSVEVIDFD 68 (253)
T ss_pred cCCCcEEEEEcCCcHHH-HHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC---CceEEEEec
Confidence 44677899999865554 444443 322 1589999988764 6665555655442 245555544
No 357
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.77 E-value=74 Score=28.30 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
.++++|=.|+++|.-.....++.....+|+.++.+++.++...+.+...+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~ 54 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG 54 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 35678877876555443332222223688889988877766655555433
No 358
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=53.46 E-value=47 Score=30.79 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|. |..++.+++..|. ..|++++.+++..+.+++
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 67899999888754 6666667777764 369999999887766543
No 359
>PRK07478 short chain dehydrogenase; Provisional
Probab=53.35 E-value=86 Score=26.99 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=30.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++++|=.|++.|.-.....++.....+|+.++.+++.++...+.++..+
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 54 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG 54 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 5678877776554433332222223689999998887777666665544
No 360
>PRK08643 acetoin reductase; Validated
Probab=53.33 E-value=80 Score=27.16 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
++++|=.|+.+| ++..+++.+ ....+|+.++.+++..+.....+...
T Consensus 2 ~k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~ 49 (256)
T PRK08643 2 SKVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD 49 (256)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 356776775544 444444433 23368888988887776666665543
No 361
>PRK06125 short chain dehydrogenase; Provisional
Probab=53.14 E-value=97 Score=26.80 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.++++|=.|++.|. +..+++. .....+|+.++.+++.++.+.+.++.
T Consensus 6 ~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~ 53 (259)
T PRK06125 6 AGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRA 53 (259)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 36788888876554 4333332 22236899999998877776666654
No 362
>PRK08589 short chain dehydrogenase; Validated
Probab=53.08 E-value=88 Score=27.52 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+++++|=.|++.|.-.....++.....+|+.++.+ +.++...+.++.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~ 51 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS 51 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh
Confidence 36678878876665443333333333789999888 444444444443
No 363
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=52.77 E-value=49 Score=30.07 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=34.6
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+++|++||=.|+ |.|..++.+++..| .+|++++.+++..+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 789999999886 56667777788776 579999988887776654
No 364
>PRK12829 short chain dehydrogenase; Provisional
Probab=52.65 E-value=1e+02 Score=26.48 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=28.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~ 235 (255)
..+++++|=.|++ |.++..+++. .....+|+.++.+++..+...+
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3457899988876 4455554443 3223689999998876554433
No 365
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=52.57 E-value=13 Score=32.02 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=20.0
Q ss_pred CccHHHHHHHHHhC-CCeEEEEEeCCHHHHHHHH
Q psy7843 202 GSGYLTTLFGAMVG-ISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 202 GtG~~aa~LA~~~g-p~~~V~gIDis~~~le~Ar 234 (255)
|.||.++.+|..+. ...+|+|+|++++.++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 56777766555431 1169999999999887765
No 366
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.39 E-value=54 Score=29.90 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+| .|..++.+++..|. ..|++++.+++..+.+++
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 7789999988875 35555666776654 369999999887776654
No 367
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.32 E-value=87 Score=26.48 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+++||=.|++.|. +..+++.+ ....+|++++.+++..+...+.+.
T Consensus 5 ~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (238)
T PRK05786 5 GKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLS 50 (238)
T ss_pred CcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5789989986444 44444433 333689999999876665544443
No 368
>PRK09273 hypothetical protein; Provisional
Probab=52.17 E-value=86 Score=28.10 Aligned_cols=59 Identities=20% Similarity=0.015 Sum_probs=43.0
Q ss_pred cCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 173 MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 173 is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
...|.....+...+. -.+.++++ ++||||.-....+-.+ | +-+.|+=.++.....+|+.
T Consensus 46 ~dYpd~a~~vA~~V~--~g~~d~GI-liCGTGiG~siAANK~-p-GIraalc~d~~sA~lar~h 104 (211)
T PRK09273 46 LTYVQNGIMASILLN--SKAVDFVV-TGCGTGQGAMLALNSF-P-GVVCGYCIDPTDAYLFAQI 104 (211)
T ss_pred CChHHHHHHHHHHHH--cCCCCEEE-EEcCcHHHHHHHHhcC-C-CeEEEEeCCHHHHHHHHHh
Confidence 456666666666666 45566654 8999999888888777 4 6677787888888887764
No 369
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=52.10 E-value=51 Score=29.40 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHhccCCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 184 ELLSGHLKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+... +++|++||=.|. |.|..++.+++..| .+|++++.+++..+.+++
T Consensus 137 ~~~~--~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 137 EICK--PKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred HhcC--CCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 3445 788999998884 56666777788775 579999988887766654
No 370
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=52.10 E-value=56 Score=29.45 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 191 ~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
.++++||-.|||. |..++.+++..|. .+|++++.+++..+.+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH
Confidence 3789999988876 6677777777652 278999998887775543
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.02 E-value=55 Score=29.76 Aligned_cols=48 Identities=31% Similarity=0.458 Sum_probs=34.8
Q ss_pred HHHhccCCCCCEEEEEcCCc-cHHHHHHHHHhCCCeE-EEEEeCCHHHHHHHHH
Q psy7843 184 ELLSGHLKYGDKVLEIGTGS-GYLTTLFGAMVGISGK-VYTIEHIPELLEAARK 235 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~-V~gIDis~~~le~Ar~ 235 (255)
+... ++++++||-.|+|. |..++.+++..| .+ |++++.+++..+.+++
T Consensus 156 ~~~~--~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAG--VRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcC--CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH
Confidence 3444 78899998888765 667777787765 44 8999888877666543
No 372
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=51.74 E-value=93 Score=26.85 Aligned_cols=48 Identities=25% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++++|=.| |+|.++..+++.+ ....+|+.++.+++-++...+.+...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~ 59 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL 59 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 467888888 4566666665544 22368999999988777766666544
No 373
>PRK07109 short chain dehydrogenase; Provisional
Probab=51.53 E-value=90 Score=28.84 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++++||=.|+++|.-.....++.....+|+.++.+++.++...+.++..+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g 56 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG 56 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 35678888865555443333232233689999999888877777776554
No 374
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=51.43 E-value=54 Score=30.37 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||=+|+| .|..++.+++..|. .+|++++.+++..+.++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 7889999988864 23344556666652 37999999988877764
No 375
>PRK06139 short chain dehydrogenase; Provisional
Probab=51.17 E-value=90 Score=28.97 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++++||=.|+++|.-.....++.....+|+.++.+++.++...+.++..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g 55 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG 55 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 35678888876555443333232233789999999988887777776655
No 376
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=50.82 E-value=91 Score=27.31 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++++|=.|++.|.-.....++.....+|+.++.+++..+...+.+...
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~ 57 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA 57 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 3567887887655443333333323368999999887666655555443
No 377
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.91 E-value=1.1e+02 Score=26.19 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=32.4
Q ss_pred CEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
++||=.|+. |.++..+++.+ ....+|+.++.+++-.+...+.+...+- .++++++.+
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D 59 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA---VAVSTHELD 59 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC---CeEEEEecC
Confidence 367877754 55555544433 2336899999998766655444443221 245555443
No 378
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.76 E-value=1.1e+02 Score=25.97 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=29.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
++++|=.|+ +|.++..+++.+ ....+|+.++.+++.++.....+..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~ 48 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLA 48 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh
Confidence 346787775 555555555443 2225888899888877766555543
No 379
>PRK09072 short chain dehydrogenase; Provisional
Probab=49.73 E-value=1e+02 Score=26.75 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
++.+||=.|+++|.-.....++.....+|+.++.+++.++.....+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL 49 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 3567888887655433332222223378999999988776655444
No 380
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=49.15 E-value=1e+02 Score=26.45 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++++|=.|+ +|.++..+++.+ ....+|+.++.+++..+.+.+.+...+
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 55 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG 55 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC
Confidence 3567886665 455555544433 233689999999887777766665543
No 381
>PRK06720 hypothetical protein; Provisional
Probab=48.31 E-value=1.3e+02 Score=25.19 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++.+|-.|.+.|.-......+.....+|+.+|.+++.++.+.+.+...+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~ 64 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG 64 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 36677877876655443332222223678888888877666555554433
No 382
>PRK06194 hypothetical protein; Provisional
Probab=48.07 E-value=99 Score=27.14 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+++||=.|.+ |.++..+++.+ ....+|+.+|.+++.++...+.+..
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 52 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA 52 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh
Confidence 5678866754 44454444432 2236899999988776665555543
No 383
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=47.95 E-value=68 Score=28.69 Aligned_cols=48 Identities=38% Similarity=0.499 Sum_probs=34.0
Q ss_pred HHHhccCCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 184 ELLSGHLKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+... ++++++||-+|+| .|..++.+++..|. ..|+.++.+++..+.++
T Consensus 153 ~~~~--~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 153 DLLG--IKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAK 201 (334)
T ss_pred HhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 3445 7889999999875 36666667776642 23888999988777664
No 384
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=47.89 E-value=56 Score=29.45 Aligned_cols=45 Identities=27% Similarity=0.494 Sum_probs=32.5
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||-.|+| .|..++.+++..|. .+|++++.+++..+.+++
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHH
Confidence 6788999988775 36667777777642 378888888777666543
No 385
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=47.70 E-value=21 Score=23.85 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCCCCCCC
Q psy7843 116 AAYKTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAP 152 (255)
Q Consensus 116 ~~~~r~~lv~~l~~~g~I~d~~vl~A~~~vPRe~Fvp 152 (255)
|...+.++++...++|- ++++++++..+|...|-.
T Consensus 6 yPa~k~~Lv~~A~~~gA--~~~vl~~L~~lP~~~Y~s 40 (44)
T PF11387_consen 6 YPADKDELVRHARRNGA--PDDVLDALERLPDREYES 40 (44)
T ss_pred CCCCHHHHHHHHHHcCC--CHHHHHHHHHCCccCCCC
Confidence 45667889999998872 568999999999876643
No 386
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=47.52 E-value=1e+02 Score=26.77 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
+++++|-.|+++|.-.....++.....+|+.++.++
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 467888888766655544433333346788887654
No 387
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.12 E-value=1.2e+02 Score=25.66 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=30.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+.++|=.|+ +|.++..+++.+ ....+|+.++.+++..+.....+..
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~ 53 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA 53 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 467888885 666666665543 2336899999988766655555543
No 388
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=46.85 E-value=39 Score=30.63 Aligned_cols=44 Identities=20% Similarity=0.112 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 191 KYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 191 ~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
.++++||=+|||. |..++.+++..|. ..|+++|.+++.++.|+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATG 187 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhh
Confidence 3577889888753 5556667776653 357788999888777654
No 389
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=46.77 E-value=58 Score=27.94 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 177 YQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 177 ~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis 226 (255)
....+...... -.+ .-|||+|-|+|..=-.|-..+ |+.+|+.+|..
T Consensus 16 ~~L~~a~~~v~--~~~-G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~ 61 (160)
T PF12692_consen 16 DCLNWAAAQVA--GLP-GPVLELGLGNGRTYDHLREIF-PDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHTT--T---S-EEEE--TTSHHHHHHHHH---SS-EEEEESS
T ss_pred HHHHHHHHHhc--CCC-CceEEeccCCCccHHHHHHhC-CCCeEEEEeee
Confidence 33444444443 233 469999999999988998888 66899999954
No 390
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=46.31 E-value=1.6e+02 Score=28.01 Aligned_cols=56 Identities=11% Similarity=0.243 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEE
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~ 249 (255)
.|+.|+=+| ---..++.++ +.+-..+|..+|+++.++..-.+..++.|+.|++-+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~a-Lt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~ 207 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALA-LTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFV 207 (354)
T ss_pred CCCeEEEEc-CchhhHHHHH-hcCCCceEEEEechHHHHHHHHHHHHHhCccchhhee
Confidence 477899999 3333333333 2333379999999999999999999999987655443
No 391
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=45.94 E-value=1.3e+02 Score=25.53 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+++||=.|+ +|.++..+++.+ ....+|++++.+++.+....+.+...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~ 53 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA 53 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 3567887775 566665555433 22268999999977666555555443
No 392
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=45.79 E-value=1.1e+02 Score=26.43 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.+++||=.|+++|.-.....++.....+|+.++.+ +-.+.+.+.+...
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~ 61 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE 61 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc
Confidence 46788888887665544433333333688888877 3344444444443
No 393
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=45.76 E-value=1.1e+02 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCC---CeEEEEEeCCHHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGI---SGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp---~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+..+...+|+|+|+-.-+..|.....+ -.+.+.||+|...++...+.+.
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~ 127 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAIL 127 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHH
Confidence 556889999999999999888776522 2578999999998876654443
No 394
>PRK12939 short chain dehydrogenase; Provisional
Probab=45.64 E-value=1.4e+02 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++++|=.|+ +|.++..+++.+ ....+|+.++.+++.+....+.++..
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~ 54 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA 54 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 3677886665 556666665543 22267888998887766665555443
No 395
>PRK06197 short chain dehydrogenase; Provisional
Probab=45.47 E-value=1.3e+02 Score=26.99 Aligned_cols=47 Identities=19% Similarity=0.090 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+++||=.|+.. .++..+++.+ ....+|+.+..+++..+.+.+.+..
T Consensus 15 ~~k~vlItGas~-gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~ 62 (306)
T PRK06197 15 SGRVAVVTGANT-GLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITA 62 (306)
T ss_pred CCCEEEEcCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 467888777644 4444444432 2236888999888777666555543
No 396
>PRK09291 short chain dehydrogenase; Provisional
Probab=45.38 E-value=1.4e+02 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=28.0
Q ss_pred CEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 194 DKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++||=.|++.|. +..+++. .....+|+++..+++..+..+......+
T Consensus 3 ~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 50 (257)
T PRK09291 3 KTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG 50 (257)
T ss_pred CEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 468878875544 4444333 2233689999988776655555444433
No 397
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=45.29 E-value=1.3e+02 Score=27.07 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCCccHH--HHHH---HHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 191 KYGDKVLEIGTGSGYL--TTLF---GAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 191 ~~g~rVLDIGcGtG~~--aa~L---A~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
...+.++++.|+.|.+ ++.| |+..| ++++.|-.+++.....++.+...++.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~Tg--GR~vCIvp~~~~~~~~~~~l~~~~~~ 95 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTG--GRHVCIVPDEQSLSEYKKALGEAGLS 95 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcC--CeEEEEcCChhhHHHHHHHHhhcccc
Confidence 3556799997665432 3222 33333 89999999999988888888877764
No 398
>PRK09186 flagellin modification protein A; Provisional
Probab=44.53 E-value=1.5e+02 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
++++||=.|++.| ++..+++.+ ....+|+.++.+++.++...+.+.
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~ 49 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLG 49 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHH
Confidence 3667888887544 444444433 333688888888877766655553
No 399
>PRK05875 short chain dehydrogenase; Provisional
Probab=43.94 E-value=1.4e+02 Score=25.93 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=28.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
++++|=.|++.| ++..+++.+ ....+|+.++.+++..+...+.+..
T Consensus 7 ~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~ 53 (276)
T PRK05875 7 DRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEA 53 (276)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 578998886544 455554433 2236899999887766555554443
No 400
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=43.75 E-value=1.2e+02 Score=25.86 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
..|.....+.+... ....++.+ +.||||.-....+-.+ | +-..++=.|+.....+|+.
T Consensus 42 dyp~~a~~va~~v~--~~~~d~GI-liCGTGiG~~iaANKv-~-GiraAl~~D~~sA~~ar~h 99 (151)
T COG0698 42 DYPDYAKKVAEAVL--NGEADLGI-LICGTGIGMSIAANKV-P-GIRAALVSDPTSAKLAREH 99 (151)
T ss_pred chHHHHHHHHHHHH--cCCCCeeE-EEecCChhHHHHhhcc-C-CeEEEEecCHHHHHHHHhc
Confidence 35566666666665 44455543 7889998887777776 3 6777888888888888765
No 401
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=43.74 E-value=1.3e+02 Score=27.31 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl 237 (255)
++++||=.|+..| ++..+++.+ ....+|+.++.+++..+.+.+.+
T Consensus 5 ~~k~vlVTGas~g-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSG-VGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 3567887776544 444444432 22368999998887666555544
No 402
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.73 E-value=64 Score=30.44 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV 214 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~ 214 (255)
..-+|.|+||.+|..|+.+....
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~i 38 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNI 38 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHHHH
Confidence 34489999999999998876544
No 403
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=43.57 E-value=85 Score=28.33 Aligned_cols=44 Identities=32% Similarity=0.542 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++.+||-.|+|. |..+..+++..|. ..|++++.+++..+.++
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVAR 201 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence 77899999998765 6677777777652 23899988877666553
No 404
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.37 E-value=59 Score=29.72 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=29.4
Q ss_pred EEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 195 rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
+|-=||+|+ +.++..++.. | .+|+.+|.+++.++.+++++.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G--~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-G--VDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHH
Confidence 677788873 3333344443 3 7899999999999998776543
No 405
>PRK10458 DNA cytosine methylase; Provisional
Probab=43.09 E-value=98 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=35.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
.-+++|+-||.|.+..-+-+.. - .-|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-G-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-C-EEEEEEechHHHHHHHHHHc
Confidence 3489999999999999886653 3 46789999999888877775
No 406
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.89 E-value=1.3e+02 Score=25.39 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+++||=+|+.. .++..+++. .....+|++++.+++-.+.....+.
T Consensus 5 ~~~vlItGasg-~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (251)
T PRK07231 5 GKVAIVTGASS-GIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL 50 (251)
T ss_pred CcEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 56788777654 444444433 2223689999999876666555443
No 407
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=42.55 E-value=1.7e+02 Score=24.95 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=30.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
+++||=.|. +|.++..+++.+ ....+|+.++.+++..+.....++..
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~ 51 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA 51 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 457775664 566676666654 23358999999888777666555543
No 408
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=42.35 E-value=32 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 202 GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 202 GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
|.|+.+..+|.......+|+++|++++.++..++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 4566665555443222679999999999998876
No 409
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=42.30 E-value=1.5e+02 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHh
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~ 240 (255)
.++++|=.|+++|.-.....++.....+|+.++.+++.+....+.++..
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~ 56 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE 56 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc
Confidence 3667888886555444333333333368999999887766665555543
No 410
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=41.87 E-value=81 Score=28.76 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||=.|+|+ |..++.+++..|. ..|++++.+++..+.++
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH
Confidence 67899999998743 3334455666553 34789999998877764
No 411
>PRK07326 short chain dehydrogenase; Provisional
Probab=41.81 E-value=1.6e+02 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.+.+||=+|. +|.++..+++.+ ....+|++++.+++......+.+.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN 51 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence 3567888885 566665555543 223689999998876665554443
No 412
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.65 E-value=55 Score=31.04 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCC-CeEEEEEeCCHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT-G-SGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 190 l~~g~rVLDIGc-G-tG~~aa~LA~~~gp-~~~V~gIDis~~~le~Ar~n 236 (255)
++++++||=+|+ | .|..++.+++..|. ..+|+++|.+++.++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 678999998873 3 56666667776431 13799999999999988875
No 413
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.52 E-value=36 Score=34.71 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=26.2
Q ss_pred CEEEEEcCCccHHHHHHHHHh------CC-----CeEEEEEeCCH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMV------GI-----SGKVYTIEHIP 227 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~------gp-----~~~V~gIDis~ 227 (255)
=+|+|+|-|+|++.+.+.+.. ++ .-+++++|..|
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 579999999999987776544 22 24899999754
No 414
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=41.40 E-value=63 Score=30.85 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 192 ~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
++.+|+=+|+| .|..++..++..| .+|+.+|.+++.++.+.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAE 209 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHh
Confidence 34578999987 4556666666555 5799999998876655443
No 415
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=41.08 E-value=63 Score=30.15 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=36.8
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
-+++|+-||.|.+..-+.+.. . .-+.++|+++.+++.=+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f-~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-F-EIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-C-eEEEEEecCHHHHHHHHHhCC
Confidence 479999999999998887763 3 568999999999999888876
No 416
>KOG1253|consensus
Probab=41.04 E-value=13 Score=37.29 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~ 243 (255)
-.++-+|||.=|+||.-++..++..+.-.+|++-|.++.+++.-++|++.++++
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE 160 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch
Confidence 446678999999999999999998855578999999999999999999988765
No 417
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=40.44 E-value=57 Score=31.87 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHH
Q psy7843 191 KYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 191 ~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~A 233 (255)
..|++|+=+|+|. |...+..++..| .+|+.+|.++.....|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEA 234 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHH
Confidence 5789999999987 444455555554 6899999998654443
No 418
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=40.36 E-value=1.1e+02 Score=26.47 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+.++++||-.|| +.|..++.+++..| .+|+.++.+++..+.++
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 678899999998 45566666677655 57999998887766653
No 419
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=40.11 E-value=2e+02 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=21.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 228 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~ 228 (255)
++++|=.|++.|.-.....++.....+|+.++.++.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence 567888886555443333333323368888888764
No 420
>PRK07831 short chain dehydrogenase; Provisional
Probab=39.76 E-value=2.1e+02 Score=24.73 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=29.4
Q ss_pred CCCCEEEEEcC-CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 191 KYGDKVLEIGT-GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 191 ~~g~rVLDIGc-GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+++++|=.|+ |+|.-......+.....+|+.++.+++.++...+.++.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~ 64 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAA 64 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence 34678888885 34433322222222226799999888877777666654
No 421
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=39.62 E-value=1.2e+02 Score=28.86 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+|+ |..++.+++..|. ..|+.+|.+++.++.|++
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARS 228 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHH
Confidence 77899988777642 3344456666654 346677888877777764
No 422
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=39.35 E-value=55 Score=35.90 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhh-------hcee--eecc-CCCccc-----------CCCcccCC-CCchhhhhhcccCccccccccc
Q psy7843 3 MYMLWSAFISLVQL-------GVYV--KCFS-NETGYE-----------TPAGWHGN-VNSDELRRVITDENVTIPGFDP 60 (255)
Q Consensus 3 ~~~~~~~~~~~~~~-------~~~~--~~~~-~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 60 (255)
..|+=|+||..-.+ |.|- |.+| .|.||. .|-+|.|- +..-.|-=|.|.|- =+|-
T Consensus 867 ILm~Ks~~iG~rKlKrTI~d~~~yR~R~Fds~~EDGyTL~~lrdPl~ly~P~~wnGyGahP~AlNiVmT~E~----flDs 942 (1301)
T PF05788_consen 867 ILMFKSAFIGYRKLKRTIKDGGTYRDRKFDSDEEDGYTLCMLRDPLALYVPVEWNGYGAHPAALNIVMTEEM----FLDS 942 (1301)
T ss_pred HHHHHHHHhhHHHhhhhhhcCCceeeccCCCCccCCeEEEEEcCceeEEeecccCCccCChhHhhccccHHH----HHHH
Confidence 35677888876554 4443 4567 578886 58999994 55566666666663 3789
Q ss_pred ccccccccccccccccCCCCCCCcCCCCCCcccccccchhhhhhhhhccCCCCchHHHHHHHHHHHHHhCCCCCcHHHHH
Q psy7843 61 MMMNKFRGFMGQVQTLNDDNDATVDRYNTPTYSINLATDKILQEKYMAITDYVEPAAYKTHFMVNDLIGKGYVKSVRVVE 140 (255)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~r~~lv~~l~~~g~I~d~~vl~ 140 (255)
++|++++.++.-+.-|-..-.+.=....++...+ .+...+..| ..|+....+. .+.++++.+
T Consensus 943 ~~~~~~~~~~~~~~~i~~~~~P~WnET~~Dkr~i---~t~t~M~~F--------------SKmaRpav~~-~L~~pe~~~ 1004 (1301)
T PF05788_consen 943 LQIGKLDEIMEPLMKIIGKFPPPWNETQADKRLI---STDTKMSFF--------------SKMARPAVRT-ALTNPEVMD 1004 (1301)
T ss_pred hhcchhHHHHHHHHHHhcCCCCCCCCCCcchhhc---ccccchHHH--------------HHhhhhhHHH-HhCCHHHHH
Confidence 9999999998877777655332222233333222 222222222 2233333333 256899999
Q ss_pred HHHhcCCCCCCCCCccccccccCCccccCCcccCcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHh
Q psy7843 141 AMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMV 214 (255)
Q Consensus 141 A~~~vPRe~Fvp~~~~~~aY~d~~~~~g~g~~is~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~ 214 (255)
++..+|-.+|.|......--...-+.-...+.+..|.-.......|..| .++..-+....-.|.++...++.+
T Consensus 1005 ~V~~LPLg~f~P~~lS~TMMhsALLKE~~ARsLL~p~YE~eyqk~ln~w-~~~~~~~~~~~~~~~ist~Y~K~f 1077 (1301)
T PF05788_consen 1005 AVEQLPLGDFSPGRLSKTMMHSALLKESRARSLLAPGYELEYQKELNSW-RPEPVEFLPSEEDGEISTSYAKLF 1077 (1301)
T ss_pred HHHhCCCCCCCCcchHHHHHHHHHhcCcchhhhcCchhHHHHHHHHhcc-cccceeecccCCCceeehhhhhhe
Confidence 9999999999997643211111111112345555555555556666533 233444555555577777767665
No 423
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=38.70 E-value=76 Score=28.70 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=26.9
Q ss_pred EEEEEcCCc-c-HHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGS-G-YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 195 rVLDIGcGt-G-~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+|.=||+|. | .++..+++. | .+|+.+|.+++.++.+++++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G--~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-G--YDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHHH
Confidence 577788863 2 233333333 2 589999999999988766443
No 424
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=38.54 E-value=1.6e+02 Score=28.11 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCC-CeEEEEEeCCHHHHHHHHHH
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI-SGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp-~~~V~gIDis~~~le~Ar~n 236 (255)
..+.....+...+.....+..+|+=+|+ |..+..+++.+.. ...|+.+|.+++.++..++.
T Consensus 212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~ 273 (453)
T PRK09496 212 GAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE 273 (453)
T ss_pred eCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 3555666666655533344577888877 7777666665522 36899999999988877664
No 425
>PRK06198 short chain dehydrogenase; Provisional
Probab=38.12 E-value=1.7e+02 Score=25.07 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeE-EEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGK-VYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~-V~gIDis~~~le~Ar~nl~ 238 (255)
.+++||=.|++.| ++..+++.+ ....+ |+.++.+++-.......+.
T Consensus 5 ~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~ 52 (260)
T PRK06198 5 DGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELE 52 (260)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHH
Confidence 4567887786444 554444433 22245 8888888765554444443
No 426
>PRK08303 short chain dehydrogenase; Provisional
Probab=38.04 E-value=1.4e+02 Score=27.16 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis 226 (255)
.++++|-.|++.|.-.....++.....+|+.++.+
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 36788888987765444333333333688888876
No 427
>PRK07774 short chain dehydrogenase; Provisional
Probab=37.79 E-value=2.1e+02 Score=24.23 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.++++|=.| |+|.++..+++.+ ....+|+.++.+++..+...+.+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~ 51 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIV 51 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 356788777 5566666665543 233689999998876655555544
No 428
>PRK06138 short chain dehydrogenase; Provisional
Probab=37.70 E-value=1.9e+02 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
++++|=.|+. |.++..+++. .....+|+.++.+++........+
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 49 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAI 49 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH
Confidence 5678888875 4444444443 222368999988877665554444
No 429
>PRK07791 short chain dehydrogenase; Provisional
Probab=37.36 E-value=1.5e+02 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~ 227 (255)
+++++|=.|++.|.-.....++.....+|+.++.+.
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 467888888776655444333332236777777654
No 430
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=37.14 E-value=1.2e+02 Score=27.24 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=33.0
Q ss_pred CCCC--CEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYG--DKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g--~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++ ++||=.|+ |.|..++.+++..|. .+|++++.+++..+.+++
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence 5655 89998886 566677777887752 279999999887766654
No 431
>KOG3045|consensus
Probab=36.97 E-value=48 Score=31.16 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHhccCCCC-CEEEEEcCCccHHHH
Q psy7843 179 HCLVLELLSGHLKYG-DKVLEIGTGSGYLTT 208 (255)
Q Consensus 179 ~~~~le~L~~~l~~g-~rVLDIGcGtG~~aa 208 (255)
+..+++.+. .+++ ..|-|+|||-+.++.
T Consensus 168 ld~ii~~ik--~r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 168 LDVIIRKIK--RRPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred HHHHHHHHH--hCcCceEEEecccchhhhhh
Confidence 355667777 4444 478999999999885
No 432
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=36.46 E-value=2.4e+02 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=26.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+++||=.|. +|.++..+++.+ ....+|+.++.++...+...+.+.
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~ 47 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEIN 47 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 346777775 455555444433 223688899988776555444443
No 433
>PRK05855 short chain dehydrogenase; Validated
Probab=36.46 E-value=1.8e+02 Score=28.13 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+.++|=+|+.+| ++..+++. .....+|+.++.+++.++...+.++..+
T Consensus 315 ~~~~lv~G~s~g-iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~ 363 (582)
T PRK05855 315 GKLVVVTGAGSG-IGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG 363 (582)
T ss_pred CCEEEEECCcCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 456887776544 44444443 3333689999999887777666665544
No 434
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=36.43 E-value=2.3e+02 Score=24.51 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=23.5
Q ss_pred EEEEEcCCccHHHHHHHHHhC----CCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAMVG----ISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~g----p~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+|-.|++.|.-.....++.. ...+|+.+..+++.++...+.+..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~ 50 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGA 50 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 355566655543322222211 225677777777766666555543
No 435
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.18 E-value=91 Score=28.18 Aligned_cols=40 Identities=25% Similarity=0.145 Sum_probs=26.9
Q ss_pred EEEEEcCCccHHH--HHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLT--TLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 195 rVLDIGcGtG~~a--a~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
+|-=||+|.=..+ ..+++. | .+|+.+|.+++.++.+++++
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G--~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-G--FDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHHH
Confidence 5777888642222 233332 2 68999999999999887764
No 436
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.96 E-value=83 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=24.9
Q ss_pred EEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHH
Q psy7843 195 KVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 195 rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~n 236 (255)
+|-=||+|. +.++..+++. | .+|+.+|++++.++.++++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g--~~V~~~d~~~~~~~~~~~~ 45 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-G--YDVVMVDISDAAVDRGLAT 45 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-C--CceEEEeCCHHHHHHHHHH
Confidence 456677752 3333333333 2 5899999999999876643
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=35.51 E-value=1.7e+02 Score=25.27 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
+++++|=.|+++|.-.....++.....+|+.++.+++.++...+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36788888876555443332222233689999998876655443
No 438
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=35.33 E-value=1.9e+02 Score=24.52 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~ 227 (255)
.+++||=.|++.|. +..+++.+ ....+|+.++.++
T Consensus 4 ~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 4 EGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCch
Confidence 36788888876554 44444433 2336888888765
No 439
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.19 E-value=1.7e+02 Score=20.89 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=27.8
Q ss_pred CccHHHHHHHHHh-CCCeEEEEEeC--------CHHHHHHHHHHHHHhCCC
Q psy7843 202 GSGYLTTLFGAMV-GISGKVYTIEH--------IPELLEAARKRVKAKAET 243 (255)
Q Consensus 202 GtG~~aa~LA~~~-gp~~~V~gIDi--------s~~~le~Ar~nl~~~gv~ 243 (255)
|.|+.++.+|..+ ....+|+-++. ++++.+..++.+++.|++
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 4567776665543 11268988984 466677777888888765
No 440
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=35.02 E-value=1.5e+02 Score=27.54 Aligned_cols=44 Identities=32% Similarity=0.654 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||=.|+| .|..++.+++..|. .+|+++|.+++..+.++
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~ 218 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAE 218 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 6788998887775 35555666666642 27888998887776654
No 441
>PRK07677 short chain dehydrogenase; Provisional
Probab=34.91 E-value=1.5e+02 Score=25.44 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=21.9
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
+++|=.|++.|.-......+.....+|+.++.+++.++...+.++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~ 46 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIE 46 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 456666665543332222222222567777776665555444443
No 442
>PRK07806 short chain dehydrogenase; Provisional
Probab=34.78 E-value=2.4e+02 Score=23.97 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCH-HHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIP-ELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~-~~le~Ar~nl~ 238 (255)
+++++|-.|+..| ++..+++. .....+|+++..+. +..+.....++
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~ 52 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIE 52 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHH
Confidence 3568888886544 44444443 22335788887654 23333333343
No 443
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=34.66 E-value=52 Score=32.10 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=30.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
.+|-=| |.||.++.+|..+....+|+++|++++.++..+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 455555 568888888776644478999999999988876
No 444
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=34.56 E-value=2.1e+02 Score=29.37 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.+.|++||=.|+ +|.++..+++.+ ....+|++++.+.+.+....+.+.
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~ 125 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVK 125 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhh
Confidence 557788887776 466666655443 333689999999887665554443
No 445
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.19 E-value=2.5e+02 Score=23.41 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=30.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
+++||=.|+ +|.++..+++.+ ....+|+.++.+++..+.....+...+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~ 53 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG 53 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC
Confidence 467887775 677776665543 122579999988877665555554433
No 446
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
Probab=34.05 E-value=1.3e+02 Score=28.17 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEe
Q psy7843 174 EPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 224 (255)
Q Consensus 174 s~P~i~~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gID 224 (255)
.+++..+.++.+.. +++|.+||=+=.-.|.+++.++.+.|..+.|+.+=
T Consensus 185 lR~d~la~il~~aN--V~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~ 233 (299)
T PF04189_consen 185 LRFDTLAQILSLAN--VHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLH 233 (299)
T ss_pred cCHHHHHHHHHhcC--CCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEe
Confidence 57788899999999 99999998887777888888888877667776664
No 447
>PRK08226 short chain dehydrogenase; Provisional
Probab=33.80 E-value=2.3e+02 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~A 233 (255)
+++++|=.|+..|. +..+++. .....+|+.++.+++..+.+
T Consensus 5 ~~~~~lItG~s~gi-G~~la~~l~~~G~~Vv~~~r~~~~~~~~ 46 (263)
T PRK08226 5 TGKTALITGALQGI-GEGIARVFARHGANLILLDISPEIEKLA 46 (263)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence 35678877875444 4444433 32336899998887644333
No 448
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.27 E-value=2.4e+02 Score=22.20 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=31.8
Q ss_pred EEEEEcCCccHHHHHHHHHh-CC-CeEEEEEeCC--HHHHHHHHHHHHHhCCCccccEEEEEEe
Q psy7843 195 KVLEIGTGSGYLTTLFGAMV-GI-SGKVYTIEHI--PELLEAARKRVKAKAETYIKRINFYEII 254 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~-gp-~~~V~gIDis--~~~le~Ar~nl~~~gv~~i~~I~f~~i~ 254 (255)
.||=.|+++|.-- .+++.+ .. ..+|+.+..+ .+.++...+.++..+ .++.+++.+
T Consensus 2 ~~lItGa~~giG~-~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D 60 (167)
T PF00106_consen 2 TVLITGASSGIGR-ALARALARRGARVVILTSRSEDSEGAQELIQELKAPG----AKITFIECD 60 (167)
T ss_dssp EEEEETTTSHHHH-HHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT----SEEEEEESE
T ss_pred EEEEECCCCHHHH-HHHHHHHhcCceEEEEeeecccccccccccccccccc----ccccccccc
Confidence 4666777655433 333332 11 2578888888 666666666666554 356666554
No 449
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=32.56 E-value=93 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=31.7
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 194 ~rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+|-=||+|+ ..++..++.. | .+|+-+|.+++.++.+++++++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G--~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-G--VPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHHHH
Confidence 4688899987 3444444544 3 7899999999999988776543
No 450
>PLN02253 xanthoxin dehydrogenase
Probab=32.51 E-value=2.3e+02 Score=24.70 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKR 236 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~n 236 (255)
.++++|=.|++ |.++..+++.+ ....+|+.++.+++..+...+.
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~ 61 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDS 61 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 36678888854 55555555433 2336899999887665544333
No 451
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=32.43 E-value=2e+02 Score=24.76 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~ 227 (255)
.++++|=.|+..|. +..+++. .....+|++++.++
T Consensus 9 ~~k~~lItG~~~gI-G~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 9 EGKVAVVTGCDTGL-GQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEecCcc
Confidence 35678888875544 4444443 32336788887654
No 452
>PRK06701 short chain dehydrogenase; Provisional
Probab=31.97 E-value=2.5e+02 Score=25.17 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIP 227 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~ 227 (255)
+++++|=.|++.|. +..+++. .....+|+.++.++
T Consensus 45 ~~k~iLItGasggI-G~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 45 KGKVALITGGDSGI-GRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCc
Confidence 36688888865544 4444433 22236788887764
No 453
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.84 E-value=1.8e+02 Score=25.10 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=22.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 193 GDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 193 g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis 226 (255)
..+||=+|||. |...+....+.|. ++++-+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 56899999984 4444333333354 689999987
No 454
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=31.45 E-value=2e+02 Score=27.18 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCH---------------------HHHHHHHHHHHHhCC
Q psy7843 193 GDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIP---------------------ELLEAARKRVKAKAE 242 (255)
Q Consensus 193 g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~---------------------~~le~Ar~nl~~~gv 242 (255)
..+||=||||. |...+......|. ++++-+|.+. .-++.|++++++.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp 94 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS 94 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC
Confidence 56899999983 4433332223344 6899999874 245666677776643
No 455
>PRK08628 short chain dehydrogenase; Provisional
Probab=31.41 E-value=2.4e+02 Score=24.22 Aligned_cols=38 Identities=5% Similarity=-0.112 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELL 230 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~l 230 (255)
+++++|=.|.+ |.++..+++.+ ....+|+.++.+++..
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 35677777764 44454444432 2236788888777655
No 456
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.28 E-value=1.2e+02 Score=28.58 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=28.3
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 194 ~rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
++|-=||+|+ ..++..++.. | .+|+..|.+++.++.++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G--~~V~l~D~~~~~~~~~~~~i~ 51 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-G--LDVVAWDPAPGAEAALRANVA 51 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHHH
Confidence 4677788873 2233334443 3 799999999998887766544
No 457
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=31.04 E-value=1.2e+02 Score=28.26 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+ +.|..++.+++..| .+++.++.+++..+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH
Confidence 678899999986 45666667777765 578888988888777754
No 458
>PRK12743 oxidoreductase; Provisional
Probab=31.04 E-value=2.8e+02 Score=23.83 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=21.5
Q ss_pred CEEEEEcCCccHHHHHHHHHh-CCCeEEEEEe-CCHHHHHHHHHHHHHh
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMV-GISGKVYTIE-HIPELLEAARKRVKAK 240 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gID-is~~~le~Ar~nl~~~ 240 (255)
++||=.|+++| ++..+++.+ ....+|+.+. .+.+..+.+.+.++..
T Consensus 3 k~vlItGas~g-iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~ 50 (256)
T PRK12743 3 QVAIVTASDSG-IGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH 50 (256)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc
Confidence 46666675444 444444332 2224665553 3444444444444443
No 459
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=30.83 E-value=1.7e+02 Score=26.23 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=33.5
Q ss_pred HHHhccCCCCCEEEEEcCC-ccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHH
Q psy7843 184 ELLSGHLKYGDKVLEIGTG-SGYLTTLFGAMV-GISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 184 e~L~~~l~~g~rVLDIGcG-tG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar 234 (255)
.... ++++++||=.|+| .|..++.+++.. | .+|++++.+++..+.++
T Consensus 156 ~~~~--~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 156 KVSG--IKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAK 204 (338)
T ss_pred HhcC--CCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHH
Confidence 3445 7889999988864 345556666652 4 68999999988877764
No 460
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.60 E-value=1.2e+02 Score=27.49 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=26.0
Q ss_pred EEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 195 KVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 195 rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl 237 (255)
+|.=||+|. +.++..+++. | .+|+.+|.+++.++.+++++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G--~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-G--FQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHH
Confidence 566677752 1223333333 2 67999999999999887643
No 461
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.07 E-value=2.7e+02 Score=25.14 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC-HHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI-PELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis-~~~le~Ar~nl~ 238 (255)
.++++|=.|++.|.-.....++.....+|+.+|.+ .+.++...+.+.
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~ 58 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIR 58 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHH
Confidence 35677777776655443333332223577777764 333333333343
No 462
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.96 E-value=2.9e+02 Score=23.76 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHH-HHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPE-LLEAARKRVKA 239 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~-~le~Ar~nl~~ 239 (255)
.++++|=.|.+.| ++..+++.+ ....+|+.++.+.+ .++...+.+..
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~ 55 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA 55 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh
Confidence 3567777775444 444444432 22357888887642 33444444443
No 463
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=29.54 E-value=2.4e+02 Score=25.16 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+ +.|..++.+++..| .+|+.++.+++..+.+++
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~ 205 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSK 205 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence 778999998888 46777777787765 679999988887776644
No 464
>PRK08265 short chain dehydrogenase; Provisional
Probab=29.22 E-value=3e+02 Score=23.89 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~A 233 (255)
.++++|=.|++.| ++..+++.+ ....+|+.++.+++.++..
T Consensus 5 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 46 (261)
T PRK08265 5 AGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAV 46 (261)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3567888886544 444444332 2236899999887654443
No 465
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=28.95 E-value=2.8e+02 Score=26.22 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=21.7
Q ss_pred CCEEEEEcCCc-cHHH-HHHHHHhCCCeEEEEEeCC
Q psy7843 193 GDKVLEIGTGS-GYLT-TLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 193 g~rVLDIGcGt-G~~a-a~LA~~~gp~~~V~gIDis 226 (255)
..+||=+|||. |... ..|++ .|- ++++-+|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~-aGv-g~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVR-AGV-GKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCC-CeEEEEeCC
Confidence 56899999983 4433 33333 344 799999987
No 466
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=28.86 E-value=2.6e+02 Score=23.57 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEEcCCc-cHHH-HHHHHHhCCCeEEEEEeCCH
Q psy7843 195 KVLEIGTGS-GYLT-TLFGAMVGISGKVYTIEHIP 227 (255)
Q Consensus 195 rVLDIGcGt-G~~a-a~LA~~~gp~~~V~gIDis~ 227 (255)
+|+=+|||. |... ..|++. |- ++++-+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC-CeEEEEeCCE
Confidence 478899983 5443 334443 44 6899999875
No 467
>PLN02702 L-idonate 5-dehydrogenase
Probab=28.76 E-value=1.8e+02 Score=26.78 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+.++++||=+|+| .|..++.+++..|. ..|++++.+++..+.++
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~ 223 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAK 223 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 6788899988764 35555666776654 35889998887766554
No 468
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=28.68 E-value=1.7e+02 Score=26.24 Aligned_cols=43 Identities=35% Similarity=0.485 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeE-EEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGK-VYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~-V~gIDis~~~le~Ar 234 (255)
++++++||=.|+| .|..++.+++..| .+ |++++.+++..+.++
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~ 207 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAK 207 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHH
Confidence 7889999888875 5666666777665 45 888888887766553
No 469
>KOG2811|consensus
Probab=28.68 E-value=1.4e+02 Score=29.35 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEE---EeCCHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYT---IEHIPELLEAAR 234 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~g---IDis~~~le~Ar 234 (255)
++..++|.|||-|.++.+++...+ ...++- +|.....+..=+
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l~vlvdR~s~R~K~D~ 226 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYLFVLVDRKSSRLKFDR 226 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEEEEeecccchhhhhhh
Confidence 447899999999999999998773 355555 776555444433
No 470
>PRK07201 short chain dehydrogenase; Provisional
Probab=28.65 E-value=2.8e+02 Score=27.67 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=30.8
Q ss_pred CCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~Ar~nl~~~g 241 (255)
++++|=.|.++| ++..+++. .....+|+.++.+++.++...+.+...+
T Consensus 371 ~k~vlItGas~g-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~ 419 (657)
T PRK07201 371 GKVVLITGASSG-IGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG 419 (657)
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence 567887776554 44444443 2233689999999988777666665443
No 471
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=28.46 E-value=3.4e+02 Score=25.71 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCH-------------------HHHHHHHHHHHHhCC
Q psy7843 193 GDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIP-------------------ELLEAARKRVKAKAE 242 (255)
Q Consensus 193 g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~-------------------~~le~Ar~nl~~~gv 242 (255)
..+||=+|||. |...+......|- ++++-+|.+. .-++.|++++++.+-
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 56899999984 4444333333355 7899999775 446677777777653
No 472
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=28.43 E-value=1.8e+02 Score=23.98 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 228 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~ 228 (255)
+.++|+|+|-|.=.-.+...+..| ..|+++|+.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc
Confidence 345999999987766655544444 78999999987
No 473
>PRK06057 short chain dehydrogenase; Provisional
Probab=28.21 E-value=1.8e+02 Score=24.99 Aligned_cols=42 Identities=24% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar 234 (255)
++++||=+|++.| ++..+++.+ ....+|+.++.++.-.+...
T Consensus 6 ~~~~vlItGasgg-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 6 AGRVAVITGGGSG-IGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4678998998544 444444433 22368999998876554443
No 474
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=27.91 E-value=1.3e+02 Score=31.23 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=31.8
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGS--GYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 194 ~rVLDIGcGt--G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+|-=||+|+ ..++..++...| ..|+-+|.+++.++.+++++++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence 4688899987 334444442333 7899999999999998776654
No 475
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.87 E-value=2e+02 Score=25.11 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~A 233 (255)
++++++||=.|+ +.|..++.+++..| .+|+++..+++-.+.+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~ 183 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALL 183 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHH
Confidence 678899998885 56777777788775 6799998888765555
No 476
>PRK08324 short chain dehydrogenase; Validated
Probab=27.74 E-value=2.5e+02 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
++++||=.|++.| ++..+++.+ ....+|+.+|.+++.++.+.+.+.
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~ 467 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELG 467 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh
Confidence 4678888886544 444443332 223689999999987766655443
No 477
>PRK07775 short chain dehydrogenase; Provisional
Probab=27.54 E-value=3.7e+02 Score=23.56 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=24.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVK 238 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~ 238 (255)
.+.||=.|+ +|.++..+++.+ ....+|+.+..+++........+.
T Consensus 10 ~~~vlVtGa-~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~ 55 (274)
T PRK07775 10 RRPALVAGA-SSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIR 55 (274)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 346776675 455555555433 222567777777665544444443
No 478
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=27.50 E-value=2.4e+02 Score=25.44 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||=.|+| .|..++.+++..| .+|+.++.+++-.+.++
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH
Confidence 7889999988853 2333445566555 57999999987777664
No 479
>PRK06196 oxidoreductase; Provisional
Probab=27.44 E-value=2.8e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl 237 (255)
.+++||=.|++. .++..+++.+ ....+|+.++.+++.++.+.+.+
T Consensus 25 ~~k~vlITGasg-gIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l 70 (315)
T PRK06196 25 SGKTAIVTGGYS-GLGLETTRALAQAGAHVIVPARRPDVAREALAGI 70 (315)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 467888888654 4555554433 22368999999987665554433
No 480
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.34 E-value=1.8e+02 Score=28.18 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHH-HHHHHHHHHHHhCCC
Q psy7843 192 YGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPE-LLEAARKRVKAKAET 243 (255)
Q Consensus 192 ~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~-~le~Ar~nl~~~gv~ 243 (255)
.+++|+=+|+| +|..++.+++..| .+|+.+|.++. ......+.+++.|+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~ 66 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGAT 66 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCE
Confidence 46789999988 4444444433333 68999996543 334444556666653
No 481
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=27.32 E-value=2.7e+02 Score=24.03 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHH-hCCCeEEEEEeCCHHHHHHH
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAM-VGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~-~gp~~~V~gIDis~~~le~A 233 (255)
+++++|=.|++.| ++..+++. .....+|+.++.+++.++..
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 4 KGEVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQEL 45 (262)
T ss_pred CCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3567888887555 44444433 23337899999887655443
No 482
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.31 E-value=2.2e+02 Score=27.05 Aligned_cols=48 Identities=29% Similarity=0.458 Sum_probs=32.2
Q ss_pred CCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCC-------------------HHHHHHHHHHHHHhC
Q psy7843 193 GDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHI-------------------PELLEAARKRVKAKA 241 (255)
Q Consensus 193 g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis-------------------~~~le~Ar~nl~~~g 241 (255)
..+|+=+||| .|...+......|. ++++-+|.+ ..-++.+.+++++..
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 5689999998 35544443334455 789999988 445666677776654
No 483
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=27.25 E-value=1.4e+02 Score=28.01 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCC-ccHHHHHHHHHhCCCeEEEEEeCCHHH
Q psy7843 191 KYGDKVLEIGTG-SGYLTTLFGAMVGISGKVYTIEHIPEL 229 (255)
Q Consensus 191 ~~g~rVLDIGcG-tG~~aa~LA~~~gp~~~V~gIDis~~~ 229 (255)
+++++||=.|+| .|..++.+|+..| .+|++++.+++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~ 214 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEK 214 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHH
Confidence 578999988874 2444455666665 578999877543
No 484
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=27.17 E-value=1.4e+02 Score=24.01 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHHHhccCCCCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHHHHHHHhCCCccccEEEEEE
Q psy7843 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253 (255)
Q Consensus 180 ~~~le~L~~~l~~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar~nl~~~gv~~i~~I~f~~i 253 (255)
.++++.+. +..+-|+=+||..|- . ..+.|-+.-...++.+++.++..|++ -+|+.|..+
T Consensus 43 ~~il~Af~---~GADGV~V~gC~~g~--------C---h~~~Gn~~a~~Rv~~~k~~L~~~Gi~-~eRv~~~~~ 101 (124)
T PF02662_consen 43 EFILRAFE---KGADGVLVAGCHPGD--------C---HYREGNYRAEKRVERLKKLLEELGIE-PERVRLYWI 101 (124)
T ss_pred HHHHHHHH---cCCCEEEEeCCCCCC--------C---CcchhhHHHHHHHHHHHHHHHHcCCC-hhHeEEEEe
Confidence 44555554 235679999999887 2 23455566778889999999999987 467877654
No 485
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=26.99 E-value=45 Score=32.87 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=24.8
Q ss_pred CccHHHHHHHHHhCCC-eEEEEEeCCHHHHHHHH
Q psy7843 202 GSGYLTTLFGAMVGIS-GKVYTIEHIPELLEAAR 234 (255)
Q Consensus 202 GtG~~aa~LA~~~gp~-~~V~gIDis~~~le~Ar 234 (255)
|-||.++.+|-.+... .+|+|+|+++..++...
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 5688888877665332 68999999998877643
No 486
>PRK10083 putative oxidoreductase; Provisional
Probab=26.92 E-value=2.2e+02 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcCCccHHHH---HHHHH-hCCCeEEEEEeCCHHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGSGYLTT---LFGAM-VGISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 190 l~~g~rVLDIGcGtG~~aa---~LA~~-~gp~~~V~gIDis~~~le~Ar~ 235 (255)
++++++||=.|+| .++. .+++. .|. ..+++++.+++..+.+++
T Consensus 158 ~~~g~~vlI~g~g--~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 158 PTEQDVALIYGAG--PVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE 204 (339)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH
Confidence 7889999988853 3443 34443 343 358889998887777653
No 487
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=26.90 E-value=1.7e+02 Score=27.23 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPEL 229 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~ 229 (255)
++++++||=.|+|. |..++.+++..| .+|++++.+++.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~ 219 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNK 219 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcch
Confidence 46889998888742 444455566665 578888877653
No 488
>KOG2334|consensus
Probab=26.76 E-value=66 Score=31.95 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCeEEEEEeCC
Q psy7843 192 YGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226 (255)
Q Consensus 192 ~g~rVLDIGcGtG~~aa~LA~~~gp~~~V~gIDis 226 (255)
...-||.+|+.++..++..|+++. ..|-|+|++
T Consensus 81 ~~rlilQ~gT~sa~lA~e~A~lv~--nDvsgidiN 113 (477)
T KOG2334|consen 81 NSRLILQIGTASAELALEAAKLVD--NDVSGIDIN 113 (477)
T ss_pred cCeEEEEecCCcHHHHHHHHHHhh--ccccccccc
Confidence 456799999999999999999985 568888875
No 489
>PF10638 Sfi1_C: Spindle body associated protein C-terminus ; InterPro: IPR018907 This C-terminal domain of spindle-body-associated protein Sfi1 has an important role to play in the bridge-splitting during bi-polar spindle assembly, and this separation event possibly requires interaction with integral components of the nuclear envelope, such as the Mps2-Bbp1 complex []. Centrally to this domain is a region carrying centrin-binding repeats with repeating units containing tryptophan, IPR013665 from INTERPRO.
Probab=26.71 E-value=19 Score=28.90 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=30.0
Q ss_pred eeccCCCcccCCCcccCCCCchhhhhhcccCcccccccccccccccccccc
Q psy7843 21 KCFSNETGYETPAGWHGNVNSDELRRVITDENVTIPGFDPMMMNKFRGFMG 71 (255)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (255)
|-|++...+.||- +-..+..+||||=-=|..++|.+++.
T Consensus 1 ~~~~~~~~l~TP~------------k~~~~~~~TIPGSE~vK~~rmeamk~ 39 (108)
T PF10638_consen 1 KSFNDSDELQTPM------------KSPNDGSNTIPGSERVKRYRMEAMKN 39 (108)
T ss_pred CCccccccccCcc------------cCCCCCCcccCchHHHHHHHHHHHHH
Confidence 4577788888884 23447889999999999999888654
No 490
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=26.67 E-value=35 Score=28.26 Aligned_cols=48 Identities=29% Similarity=0.496 Sum_probs=37.2
Q ss_pred eeccCCCcccCCCcccCCCCchhhhhhcccCcccccccccccccccccccc
Q psy7843 21 KCFSNETGYETPAGWHGNVNSDELRRVITDENVTIPGFDPMMMNKFRGFMG 71 (255)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (255)
+-|+|. ||-----.-|..+.--++.|.+|||-+|+ +-+||+.++.|..
T Consensus 38 ~t~~~~-G~vg~g~~~grf~~~ai~~vv~de~~~i~--d~~~m~G~tvf~r 85 (128)
T COG4578 38 GTFQNQ-GYVGQGPLSGRFCPYAIANVVRDEDERIP--DQLMMKGLTVFAR 85 (128)
T ss_pred hHHhhC-ceeeeccccccccceeEEEEEEcCCcccc--chHhhcCceeecC
Confidence 456776 77665556678888889999999998887 5577888888765
No 491
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=26.01 E-value=3.5e+02 Score=23.59 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCH------------------HHHHHHHHHHHHhCC
Q psy7843 193 GDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIP------------------ELLEAARKRVKAKAE 242 (255)
Q Consensus 193 g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~------------------~~le~Ar~nl~~~gv 242 (255)
..+|+=+|||. |...+....+.|. ++++-+|.+. .-++.+++++++.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp 95 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINP 95 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCC
Confidence 56899999984 5444333333355 7899999882 345566677766543
No 492
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.98 E-value=1.8e+02 Score=26.38 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
.+++++||-.|+|. |..++.+++..|. .+|++++.+++..+.++
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~ 205 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAK 205 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 56788888877654 5566677777652 26888877776665544
No 493
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.97 E-value=3.6e+02 Score=22.55 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCeEEEEE-eCCHHHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMV-GISGKVYTI-EHIPELLEAARKRVKA 239 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gI-Dis~~~le~Ar~nl~~ 239 (255)
++++|=+|+ +|.++..+++.+ ....+|+.+ +.+++..+...+.+..
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~ 52 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE 52 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 456776764 566666555443 222578777 8887766655555544
No 494
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=25.89 E-value=2.1e+02 Score=25.17 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcC--CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT--GSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGc--GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++++||=.|+ +.|..++.+++..| .+|++++.+++..+.++
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~ 184 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVR 184 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 778899888884 56667777788765 67999998887766653
No 495
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=25.72 E-value=2e+02 Score=26.04 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=29.2
Q ss_pred CCCCCEEEEEcC-CccHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGT-GSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGc-GtG~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
++++.+||=.|| +.|..++.+++..| .+|+.++.+++..+.++
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 678888777776 23444445555554 58999999888777664
No 496
>PRK06181 short chain dehydrogenase; Provisional
Probab=25.59 E-value=2.7e+02 Score=23.92 Aligned_cols=45 Identities=7% Similarity=0.062 Sum_probs=24.7
Q ss_pred CEEEEEcCCccHHHHHHHHHh-CCCeEEEEEeCCHHHHHHHHHHHHH
Q psy7843 194 DKVLEIGTGSGYLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239 (255)
Q Consensus 194 ~rVLDIGcGtG~~aa~LA~~~-gp~~~V~gIDis~~~le~Ar~nl~~ 239 (255)
.+||=.|+. |.++..+++.+ ....+|+.++.++.-.+...+.+..
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~ 47 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD 47 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 356766644 44444444322 2236788888887665555444443
No 497
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.52 E-value=1.3e+02 Score=29.55 Aligned_cols=40 Identities=25% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHH
Q psy7843 192 YGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAA 233 (255)
Q Consensus 192 ~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~A 233 (255)
.|++|+=+|+|. |...+..++..| .+|+.+|+++.....+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A 251 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQA 251 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHH
Confidence 789999999975 222333344444 6899999998765444
No 498
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=25.48 E-value=92 Score=30.97 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=25.6
Q ss_pred EEEEEcCCccHHHHHHHHHh---CCCeEEEEEeCCHHHHHHHHH
Q psy7843 195 KVLEIGTGSGYLTTLFGAMV---GISGKVYTIEHIPELLEAARK 235 (255)
Q Consensus 195 rVLDIGcGtG~~aa~LA~~~---gp~~~V~gIDis~~~le~Ar~ 235 (255)
+|.=|| .||.++.+|..+ |...+|+++|++++.++..++
T Consensus 3 ~I~ViG--~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 3 KICCIG--AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred EEEEEC--CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc
Confidence 455564 566665555443 233679999999999888543
No 499
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=25.42 E-value=3.3e+02 Score=24.69 Aligned_cols=45 Identities=20% Similarity=0.023 Sum_probs=22.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCC-eEEEEEeCCHHHHHHHHHHH
Q psy7843 193 GDKVLEIGTGSGYLTTLFGAMVGIS-GKVYTIEHIPELLEAARKRV 237 (255)
Q Consensus 193 g~rVLDIGcGtG~~aa~LA~~~gp~-~~V~gIDis~~~le~Ar~nl 237 (255)
++++|=.|+..|.-.....++.... .+|+.+..+++..+.+.+.+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l 48 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSL 48 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 3466666665544333322222222 46777777766555444433
No 500
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=25.26 E-value=2.3e+02 Score=26.15 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCeEEEEEeCCHHHHHHHH
Q psy7843 190 LKYGDKVLEIGTGS-GYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234 (255)
Q Consensus 190 l~~g~rVLDIGcGt-G~~aa~LA~~~gp~~~V~gIDis~~~le~Ar 234 (255)
+.++++||=.|+|. |..++.+++..|. ..|++++.+++..+.++
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~ 225 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAK 225 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 77899998887632 3334445666553 35888998887776663
Done!