RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7843
(255 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 112 bits (282), Expect = 1e-30
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
++ +L G + S +V EAM VD+EEF P + D P+ +GYG + P+ H ++
Sbjct: 6 LIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMM 65
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
LELL LK G +VLEIG+GSGYLT F MVG G V +IEHIPEL+E AR+ ++
Sbjct: 66 LELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEK 120
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 106 bits (267), Expect = 2e-28
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 119 KTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQ 178
K + LI +GY+KS RV++A+ V +EEF P + + D P+++GYG + P+
Sbjct: 7 KKALIDK-LINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHM 65
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
++ ELL LK G KVLEIGTGSGY + +VG G V +IE IPEL E A +R++
Sbjct: 66 VAMMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR 123
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 102 bits (257), Expect = 8e-27
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 119 KTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQ 178
+ +V L +G RV++A V +E F P + D + +G G + P+
Sbjct: 2 RGRMLVERLRTEGITDE-RVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHM 60
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
+L+LL LK GD+VLEIGTGSGY + +V G+V +IE I EL E AR+ ++
Sbjct: 61 VARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLE 115
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 98.6 bits (246), Expect = 4e-25
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 124 VNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVL 183
+ +LI +GY+KS +V++A+ +V + F P + + D P+++GYG + + ++
Sbjct: 10 IEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMC 69
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
ELL LK G KVLEIGTGSGY + +VG SGKV TIE IPEL E A+K +K
Sbjct: 70 ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK 123
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 95.7 bits (239), Expect = 5e-24
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
+V L +G + RV+EA+ +E F P K + + + +G G + PY +
Sbjct: 12 LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARM 70
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
ELL LK GD+VLEIGTGSGY + + + +V+++E I L A++R+K
Sbjct: 71 TELLE--LKPGDRVLEIGTGSGYQAAV---LAHLVRRVFSVERIKTLQWEAKRRLKQ 122
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 66.0 bits (161), Expect = 3e-13
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHC 180
+V +L+ +G +KS RV +AM V +EEF + + D P+ L G + P+
Sbjct: 3 KRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVA 62
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 229
++ EL+ + G K+LE+GTGSGY + + GKVYT+E + EL
Sbjct: 63 MMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKEL 109
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 61.2 bits (149), Expect = 7e-11
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 28/133 (21%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTW---------- 172
+V++L G ++S RV A R V + FAP PL+K Y
Sbjct: 8 LVDELREDGVIRSPRVEAAFRTVPRHLFAPGAPLEKA---------YAANRAVVTKRDED 58
Query: 173 ------MEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226
+ P+ ++LE ++ G +VLEIG+G GY L +VG SG+V T++
Sbjct: 59 GAALSSVSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDID 115
Query: 227 PELLEAARKRVKA 239
++ + AR + A
Sbjct: 116 EDVTDRARACLAA 128
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 49.2 bits (118), Expect = 5e-07
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ G +VLE GTGSG LT VG G V T E + + AR+ +
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE 141
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 45.9 bits (109), Expect = 3e-06
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRIN 249
LK G KVL++G G+GYLT + +G +V I+ E +E A++ K + +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL---GYENVE 57
Query: 250 FYE 252
F +
Sbjct: 58 FIQ 60
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 47.0 bits (112), Expect = 3e-06
Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 40/155 (25%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAP--------------MDPLDKGHYDYPIDLG 168
+ L G + EA+ V + F P + ++ + L
Sbjct: 1 LAARLAAAGVLTDPAWREAVEAVPRHLFLPGFFEPLPDGRGWRPVTADRPDPDEW-LALV 59
Query: 169 Y-----------------------GTWMEPPYQHCLVLELL-SGHLKYGDKVLEIGTGSG 204
Y G Q LV +L + ++ G +VLEIGTG+G
Sbjct: 60 YSDETLVTQLDGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALDVEDGHRVLEIGTGTG 119
Query: 205 YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
Y L +G V ++E P L A + A
Sbjct: 120 YSAALLCHRLG-DDNVTSVEVDPGLAARAASALAA 153
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 44.8 bits (106), Expect = 8e-06
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237
L L L+ GD +L+IG G+G +T +VG +GKVY ++ + + R+
Sbjct: 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA 85
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 43.4 bits (103), Expect = 4e-05
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
ELL ++ GD+VL++G G G VG G+V I+ +L A++R
Sbjct: 11 TFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG 66
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 40.8 bits (96), Expect = 6e-05
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246
G +VL+IG G+G L A + +V ++ PE+LE AR+ K I
Sbjct: 2 GARVLDIGCGTGSLAIEL-ARLFPGARVTGVDLSPEMLELARENAKLALGPRIT 54
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 40.7 bits (96), Expect = 3e-04
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
+K GDKVL++ G+G + L VG +G+V ++ +LE AR+++K K ++ +
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 41.0 bits (96), Expect = 3e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
L G +VLEIG G+GY + +VG G V ++E+ ++ E A++ V+
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR 126
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 40.0 bits (94), Expect = 4e-04
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 138 VVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVL 197
++ + E +E P+ + G L LL+ L ++L
Sbjct: 27 LLAELEEFARENGVPIIDPETGAL---------------------LRLLAR-LSGPKRIL 64
Query: 198 EIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
EIGT GY + G++ TIE E E AR+ +
Sbjct: 65 EIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAE 106
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 39.9 bits (94), Expect = 5e-04
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 236
+K G KVL +G SG + +VG G VY +E P EL+ A+KR
Sbjct: 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKR 121
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 38.2 bits (89), Expect = 7e-04
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
GD+VL+ G GSG A G +V +E PE AR+R+
Sbjct: 1 GDRVLDPGAGSGAFLLAA-ARAGPDARVVGVELDPEAAALARRRLALAG 48
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
LK G+ VL++G+G G+ L VG +GKV ++ PE+L AR
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA 120
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 39.0 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 167 LGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226
L +GT P CL E L V+++G GSG L ++ +G + KV I+
Sbjct: 136 LAFGTGTHPTTSLCL--EWLEDLDLKDKNVIDVGCGSGIL-SIAALKLGAA-KVVGIDID 191
Query: 227 PELLEAARK 235
P +E+ARK
Sbjct: 192 PLAVESARK 200
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 38.0 bits (89), Expect = 0.002
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
GD VLEIG G G LT + + KVY IE P L E R E
Sbjct: 30 GDPVLEIGPGKGALTD---ELAKRAKKVYAIELDPRLAEFLRDD--------EIAAGNVE 78
Query: 253 IIV 255
II
Sbjct: 79 IIE 81
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 37.8 bits (89), Expect = 0.003
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
++ GDKVL++ G+G L VG +G+V ++ +L R++++
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL 99
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 36.8 bits (86), Expect = 0.005
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
L L L + GD++ +IG G+G +T + A+ G SG+V IE E LE +
Sbjct: 24 ALTLSKLR--PRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALELIER 76
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 36.8 bits (85), Expect = 0.007
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250
K GD+VL++ GSG L L VG GKV ++ E L A R + KA++ K I +
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEW 131
Query: 251 YE 252
E
Sbjct: 132 IE 133
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 36.3 bits (84), Expect = 0.009
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
LK G V E GTGSG L+ V +G +YT E + + AR+ +
Sbjct: 100 LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFR 148
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 35.6 bits (83), Expect = 0.010
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
GD VLEIG G G LT ++ + +V IE P L R++ A
Sbjct: 14 GDTVLEIGPGKGALTE---ELLERAKRVTAIEIDPRLAPRLREKFAA 57
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 35.4 bits (82), Expect = 0.017
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
LV L+ L+ ++L++GTGSG + + A G +V ++ P+ L AR+
Sbjct: 98 LLVEAALALLLQLDKRILDLGTGSGAI-AIALAKEGPDAEVIAVDISPDALALARE 152
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 33.9 bits (78), Expect = 0.018
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246
+VL++G G+G L + G +V ++ P LE ARK A ++
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVE 50
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 34.8 bits (80), Expect = 0.024
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE----HIPELLEAARKRVKAK 240
LK G V+++ G GY T +F VG GKVY E R A+
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR 100
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 34.2 bits (79), Expect = 0.044
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
GD VLEIG G G LT ++ + KV IE L E RK +
Sbjct: 30 GDVVLEIGPGLGALTE---PLLKRAKKVTAIEIDRRLAERLRKLLS 72
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 32.7 bits (75), Expect = 0.052
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
L L L L+ GD + +IG G+G +T +V +G+VY IE PE L+ + ++
Sbjct: 9 ALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRR 65
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 33.6 bits (77), Expect = 0.070
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 176 PYQHCLVLELLSG----HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE--HIP-- 227
P++ L ++ G +K G KVL +G SG + +VG G VY +E H
Sbjct: 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR 171
Query: 228 ELLEAARKR 236
+L A+KR
Sbjct: 172 DLTNMAKKR 180
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 33.4 bits (77), Expect = 0.079
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237
+L+ D VLEIG G G LTT + + +V IE P L + ++++
Sbjct: 26 NLQESDTVLEIGPGKGALTT---ELAKRAKQVVAIEIDPRLAKRLQEKL 71
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 32.9 bits (76), Expect = 0.090
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 193 GDKVLEIGTGSGYLTTLFGAM 213
GD+VLE+GTGSG + +
Sbjct: 24 GDRVLEVGTGSGIVAIVAAKN 44
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 32.8 bits (76), Expect = 0.11
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 20/56 (35%)
Query: 171 TWMEPPYQHCLVLEL--------------------LSGHLKYGDKVLEIGTGSGYL 206
+W +PP + +EL L + G VL++G GSG L
Sbjct: 78 SWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGIL 133
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYL 206
L LE L +K G+ VL++G GSG L
Sbjct: 149 LCLEALESLVKPGETVLDVGCGSGIL 174
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 31.1 bits (71), Expect = 0.14
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 197 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
L++G G+G L G +V ++ PE+L ARKR K
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKRAPRK 42
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 31.9 bits (73), Expect = 0.24
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 165 IDLG--YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYL 206
+D G +GT P CL E L LK G VL++G GSG L
Sbjct: 135 LDPGLAFGTGTHPTTSLCL--EALEKLLKKGKTVLDVGCGSGIL 176
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 31.8 bits (73), Expect = 0.29
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
GD VLEIG G G LT ++ + +V IE L E ++R
Sbjct: 31 GDNVLEIGPGLGALTE---PLLERAARVTAIEIDRRLAEVLKERFA 73
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 31.1 bits (71), Expect = 0.52
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
D VLEIG G+G LT ++ ++ KV IE P ++ +KR +
Sbjct: 38 DTVLEIGPGTGNLTEK---LLQLAKKVIAIEIDPRMVAELKKRFQN 80
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 30.6 bits (66), Expect = 0.63
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 146 DKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLEL-LSGHLKYGDKVLEIGTGSG 204
D A + YD +L + L+L L L L G VL+IG G+G
Sbjct: 1 DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTG 60
Query: 205 YLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
L L + G V ++ PE+L AR R + + +
Sbjct: 61 RL-ALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFV 103
>gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function
prediction only].
Length = 207
Score = 30.2 bits (68), Expect = 0.77
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 213 MVGISGKVYTIEHIPELLEAARKRVKAK-AETYIKRINFYEI 253
++GI+G + + +L EA + + AE I R+ I
Sbjct: 3 ILGINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNI 44
>gnl|CDD|220208 pfam09369, DUF1998, Domain of unknown function (DUF1998). This
family of proteins are functionally uncharacterized.
They are mainly found in helicase proteins so could be
RNA binding. This family includes a probable zinc
binding motif at its C-terminus.
Length = 82
Score = 28.7 bits (65), Expect = 0.83
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 214 VGISGKVYTIEHIPELLEAARKRVKA 239
G G+++ E + ELLE A + ++
Sbjct: 48 AGYLGRLF--ERLEELLERALELLED 71
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 30.1 bits (68), Expect = 0.91
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
K G+K L++ G+G T G SGKV ++ +L+ K+ K
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAK 93
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
G KVL++ G+G L GKV ++ E+LE A+K+ +
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPL 88
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 29.9 bits (68), Expect = 1.3
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 35/105 (33%)
Query: 160 HYDYPIDLGYGTWMEPPYQH-C-------------------LVLELLSGHLKYGDKVLEI 199
HYD D Y +++P + C L+LE L LK G +L+I
Sbjct: 23 HYDLSNDF-YRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKL--GLKPGMTLLDI 79
Query: 200 GTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239
G G G Y +G V G+ T+ E L A KR+ A
Sbjct: 80 GCGWGGLAIYAAEEYGVTVVGV-----TLS--EEQLAYAEKRIAA 117
>gnl|CDD|224801 COG1889, NOP1, Fibrillarin-like rRNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 231
Score = 29.6 bits (67), Expect = 1.4
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 236
+K G KVL +G SG + +VG G++Y +E P ELL+ A KR
Sbjct: 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR 123
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 27.7 bits (62), Expect = 2.0
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 197 LEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253
L+IG G+G L + ++ P LEAA +R+ A R+ +
Sbjct: 1 LDIGCGTGTLLRAL-LEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVL 56
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGA 212
L L LK G +VL+IG G+G L L
Sbjct: 13 LARLLPRLKPGGRVLDIGCGTGILLRLLRE 42
>gnl|CDD|163484 TIGR03772, anch_rpt_subst, anchored repeat ABC transporter,
substrate-binding protein. Members of this protein
family are ABC transporter permease subunits as
identified by pfam00950, but additionally contain the
Actinobacterial insert domain described by TIGR03769.
Some homologs (lacking the insert) have been described
as transporters of manganese or of chelated iron.
Members of this family typically are found along with an
ATP-binding cassette protein, a permease, and an
LPXTG-anchored protein with two or three copies of the
TIGR03769 insert that occurs just once in this protein
family [Transport and binding proteins, Unknown
substrate].
Length = 479
Score = 28.7 bits (64), Expect = 3.0
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 112 YVEPAAYKTHFMVNDLIGKGYV----KSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDL 167
+ +P Y+ F + G V ++ + A LD GH D +DL
Sbjct: 179 FSKPGIYRLSFAAQLSVDPGKVPMGEQTFTFAVGVDPHSVPGMAAATVLDAGHADLAVDL 238
Query: 168 GYGTWM 173
Sbjct: 239 DQQRIY 244
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 28.6 bits (65), Expect = 3.3
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 180 CLVLELLSGHLKYGD-KVLEIGTGSG 204
LV L L +VL++GTGSG
Sbjct: 95 ELVEWALEALLLKEPLRVLDLGTGSG 120
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 28.0 bits (63), Expect = 3.6
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 26/81 (32%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR---------------- 236
+VL+IG+G+G + A+ KV LLE+ K+
Sbjct: 68 AKRVLDIGSGAG-FPGIPLAIAFPDLKVT-------LLESLGKKIAFLREVKKELGLENV 119
Query: 237 --VKAKAETYIKRINFYEIIV 255
V +AE + + Y+++
Sbjct: 120 EIVHGRAEEFGQEKKQYDVVT 140
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 105
Score = 26.5 bits (59), Expect = 5.8
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 197 LEIGTGSGYLTTLFGAMVGISG--KVYTIEHIP 227
+EIG SG T + +G ++Y+I+ P
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWP 33
>gnl|CDD|146108 pfam03306, AAL_decarboxy, Alpha-acetolactate decarboxylase.
Length = 221
Score = 27.5 bits (62), Expect = 6.4
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 16/55 (29%)
Query: 177 YQHCLVLELLSGH----------LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVY 221
YQH + L+ G LK+GD IGT L G M+ + GK Y
Sbjct: 2 YQHSTLSALMDGVYDGTITIGELLKHGD--FGIGT----FNGLDGEMIILDGKAY 50
>gnl|CDD|215236 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 27.8 bits (62), Expect = 6.5
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 28/96 (29%)
Query: 73 VQTLNDDNDATVD-----RYNTPTYSINLATDKILQEKYMAITDYVEPAAYKTHFMVNDL 127
VQT+ D A VD +Y PT ++++ + +YV P ++ +
Sbjct: 265 VQTMEDLRAAGVDVVTFGQYLRPT------------KRHLPVKEYVTPEKFEFWREYGEE 312
Query: 128 IGKGYVKS---VRV--------VEAMREVDKEEFAP 152
+G YV S VR +++M D+ + A
Sbjct: 313 MGFRYVASGPLVRSSYKAGEFFIKSMIREDRAKAAA 348
>gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase. Members of
this protein family are CDP-glucose 4,6-dehydratase from
a variety of Gram-negative and Gram-positive bacteria.
Members typically are encoded next to a gene that
encodes a glucose-1-phosphate cytidylyltransferase,
which produces the substrate, CDP-D-glucose, used by
this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 349
Score = 27.7 bits (62), Expect = 6.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 176 PYQHCLVLELLSGHLKYGDKVLE 198
P+QH VLE LSG+L +K+
Sbjct: 224 PWQH--VLEPLSGYLLLAEKLFT 244
>gnl|CDD|206059 pfam13888, MRF_C2, Myelin gene regulatory factor C-terminal domain
2. This domain is found further downstream of
Peptidase_S74, pfam13884, and MRF_C1, pfam13887. The
function is not known.
Length = 141
Score = 26.8 bits (59), Expect = 7.0
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 135 SVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGT 171
S++++E + + + + MD G+Y Y I + T
Sbjct: 4 SIQILEIQQLITRRYCSRMDQCGPGNYTYKIPVSKYT 40
>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases. Formaldehyde
dehydrogenase (FDH) is a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. Formaldehyde dehydrogenase (aka ADH3) may be
the ancestral form of alcohol dehydrogenase, which
evolved to detoxify formaldehyde. This CD contains
glutathione dependant FDH, glutathione independent FDH,
and related alcohol dehydrogenases. FDH converts
formaldehyde and NAD(P) to formate and NAD(P)H. The
initial step in this process the spontaneous formation
of a S-(hydroxymethyl)glutathione adduct from
formaldehyde and glutathione, followed by FDH-mediated
oxidation (and detoxification) of the adduct to
S-formylglutathione. Unlike typical FDH, Pseudomonas
putida aldehyde-dismutating FDH (PFDH) is
glutathione-independent. The medium chain alcohol
dehydrogenase family (MDR) have a NAD(P)(H)-binding
domain in a Rossmann fold of a beta-alpha form. The
N-terminal region typically has an all-beta catalytic
domain. These proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and have 2 tightly bound zinc atoms per subunit.
Length = 347
Score = 27.6 bits (62), Expect = 7.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
G V IG G L + GA + + ++ ++ PE L+ A++
Sbjct: 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA 211
>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
Length = 963
Score = 27.4 bits (61), Expect = 8.4
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI 223
L EL+S + YG I G + FG M G++G Y++
Sbjct: 909 KLANELVSKAITYG-----INQGLNHANESFGLMNGVTGIGYSL 947
>gnl|CDD|233120 TIGR00764, lon_rel, lon-related putative ATP-dependent protease.
This model represents a set of proteins with extensive
C-terminal homology to the ATP-dependent protease La,
product of the lon gene of E. coli. The model is based
on a seed alignment containing only archaeal members,
but several bacterial proteins match the model well.
Because several species, including Thermotoga maritima
and Treponema pallidum, contain both a close homolog of
the lon protease and nearly full-length homolog of the
members of this family, we suggest there may also be a
functional division between the two families. Members of
this family from Pyrococcus horikoshii and Pyrococcus
abyssi each contain a predicted intein [Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 608
Score = 27.5 bits (61), Expect = 8.5
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 217 SGKVY-TIEHIPELLEAARKRVKAKAETYIKRINFYEIIV 255
SGKVY T EH+ + + A+ K A+ YI+R Y++IV
Sbjct: 374 SGKVYVTAEHVLKAKKLAKTLEKQLADNYIERKKRYKVIV 413
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 27.1 bits (60), Expect = 8.7
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
++ G L++ G+ + VG G V ++ +L R++VK ++ +
Sbjct: 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 26.9 bits (60), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYL 206
L+L+ L LK G +L+IG G G L
Sbjct: 53 LILDKL--GLKPGMTLLDIGCGWGGL 76
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 27.0 bits (61), Expect = 9.6
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
GD VLEIG G G LT ++ + KV +E +L +
Sbjct: 43 GDNVLEIGPGLGALTE---PLLERAAKVTAVEIDRDLAPILAETFAED 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,562,742
Number of extensions: 1307595
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 82
Length of query: 255
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 160
Effective length of database: 6,723,972
Effective search space: 1075835520
Effective search space used: 1075835520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)