RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7843
(255 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 136 bits (346), Expect = 6e-40
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
++++L G +K+ +V E M D+ +A +P + D P +G+ + P+ H
Sbjct: 12 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNP----YMDSPQSIGFQATISAPHMHAYA 67
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242
LELL L G K L++G+GSG LT F MVG +GKV I+HI EL++ + V+
Sbjct: 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 127
Query: 243 TYIKRIN 249
T +
Sbjct: 128 TLLSSGR 134
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 130 bits (330), Expect = 1e-37
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
++ LI +GY+KS RV++A+ +V +EEF P + + D P+++GYG + + ++
Sbjct: 10 VIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
ELL LK G KVLEIGTG GY + +VG G V +IE IPEL E A + ++
Sbjct: 70 CELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK 124
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 130 bits (328), Expect = 3e-37
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
++ +L +G + V M +VD+ ++ P + D P+ + +G + P+ H L
Sbjct: 15 LLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIP----YIDTPVYISHGVTISAPHMHALS 70
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLF----GAMVGISGKVYTIEHIPELLEAARKRVK 238
L+ L LK G + +++G+GSGYLT + + V +E + +L+ + + +K
Sbjct: 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK 130
Query: 239 AKAETYIKRINF 250
+K NF
Sbjct: 131 RDKPELLKIDNF 142
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 130 bits (328), Expect = 3e-37
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
++ L G + S V +AM+E D++ ++P +P D P +G G + P+ H
Sbjct: 19 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYM----DAPQPIGGGVTISAPHMHAFA 74
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG-----KVYTIEHIPELLEAARKRV 237
LE L HLK G ++L++G+GSGYLT F + G ++ IEH EL+ ++ +
Sbjct: 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 238 KAKAETYIKRIN 249
+ +
Sbjct: 135 NTDDRSMLDSGQ 146
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 126 bits (318), Expect = 9e-36
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
V L +G ++S V A + + H D P+ + G + P+ ++
Sbjct: 24 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
LE+ +LK G +LE+GTGSG+ L +V VYTIE IPEL+E A++ ++
Sbjct: 84 LEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER 136
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 113 bits (284), Expect = 6e-31
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLV 182
+++ L +G ++ +V+ A+ V +E+F K + + +G G + PY +
Sbjct: 11 LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
ELL L +VLEIGTGSGY T + +V V ++E I L AR+R+K
Sbjct: 70 TELL--ELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKN 121
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 110 bits (277), Expect = 9e-30
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 126 DLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDY--PIDLGYGTWMEPPYQHCLVL 183
+ I + +K+ + EA +VD+ F P + D + + + G +L
Sbjct: 5 EEILRK-IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFML 63
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ L L G KVLEIGTG GY T L +V KV ++E ++ A K +
Sbjct: 64 DEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY 114
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 108 bits (271), Expect = 4e-28
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMD-PLDKGHYDYPI----DLGYGTWMEPPY 177
+ L G S + +A E+ +EEF PL + D + D + P
Sbjct: 5 LFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62
Query: 178 QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237
L +E + L G +VLEIG G+GY + +VG G V ++E+ ++ E A++ V
Sbjct: 63 LMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
Query: 238 KA 239
+
Sbjct: 121 ER 122
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 68.7 bits (167), Expect = 1e-13
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHC 180
++GK + +R +++ P DY + + GT + P
Sbjct: 45 AVPFGKIVGKFPGQILRSS------FGKQYMLRRPA---LEDYVVLMKRGTAITFPKDIN 95
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
++L ++ + GD VLE G+GSG ++ VG G+V + E + + A+K K
Sbjct: 96 MILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 64.6 bits (157), Expect = 1e-12
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 113 VEPAAYKTH---FMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGY 169
V + T + ++IG+ + ++++ EF + P DY +
Sbjct: 22 VSKRDFHTDLGILKLEEIIGRNFGEAIKSH------KGHEFKILRPR---IVDYLDKMKR 72
Query: 170 GTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPEL 229
G + P L++ + GD ++E G GSG LT +VG G+V + E +
Sbjct: 73 GPQIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDF 130
Query: 230 LEAARKRVK 238
+ A + +K
Sbjct: 131 AKLAWENIK 139
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 62.7 bits (152), Expect = 8e-12
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHC 180
+N++ KG + +R ++ + P D +++ T + P
Sbjct: 52 IIDLNEVFEKGPGEIIRTS------AGKKGYILIPS---LIDEIMNMKRRTQIVYPKDSS 102
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
+ +L +K GD++++ G GSG + + VG SGKV+ E E + A +
Sbjct: 103 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT 158
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 58.7 bits (141), Expect = 2e-10
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 7/123 (5%)
Query: 123 MVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDK------GHYDYPIDLGYGTWMEPP 176
++ K + + A+ + K L+ D P + + P
Sbjct: 47 TIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPR 106
Query: 177 YQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
Y L E G + G++ + IG G LT + + V +V +E P++ E +RK
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKV 165
Query: 237 VKA 239
++
Sbjct: 166 IEG 168
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 58.1 bits (140), Expect = 3e-10
Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 11/118 (9%)
Query: 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHC 180
L+ G VR EE + P +Y + + P
Sbjct: 36 SVPHEALLEAGPGGVVR------THLGEELSVHRPT---LEEYLLHMKRSATPTYPKDAS 86
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
++ LL G +VLE GTGSG LT VG G V + E P L A + V+
Sbjct: 87 AMVTLLDLA--PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 57.4 bits (139), Expect = 3e-10
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 153 MDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGA 212
DP D P L + P + VL+ LK G VL++GTG+G+
Sbjct: 7 FDPSKIKKLDDPSRL----ELFDPEK---VLKEF--GLKEGMTVLDVGTGAGFYLPYLSK 57
Query: 213 MVGISGKVYTIEHIPELLEAARKRVKAK 240
MVG GKVY I+ E++ A ++V
Sbjct: 58 MVGEKGKVYAIDVQEEMVNYAWEKVNKL 85
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 55.3 bits (133), Expect = 1e-09
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243
+ + +K GD V++ G+G T ++VG +G+V+ + + + K++
Sbjct: 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-- 71
Query: 244 YIKRINFYE 252
I R+ +
Sbjct: 72 LIDRVTLIK 80
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 50.7 bits (121), Expect = 9e-08
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 188 GHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ +++ G G GYL + ++ K I+ LL AR+ +
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 50.5 bits (120), Expect = 1e-07
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 11/118 (9%)
Query: 122 FMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCL 181
+ +IG V+ + F + PL DY + + G + P
Sbjct: 40 IAHDAVIGLEQGSVVKSS------NGALFLVLRPL---LVDYVMSMPRGPQVIYPKDAAQ 90
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
++ + G +VLE G GSG LT VG +G+V + E + E AR+ V
Sbjct: 91 IVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSG 146
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 50.0 bits (119), Expect = 1e-07
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Query: 121 HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHC 180
+++IGK + E R +E + T + P
Sbjct: 35 VLKFDEVIGKPEGVKINGFEVYRPTLEE-------------IILLGFERKTQIIYPKDSF 81
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ L +L +VLE GTGSG L + + G+V+T E + E + A+K +K
Sbjct: 82 YIALKL--NLNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKK 135
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 50.1 bits (119), Expect = 2e-07
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKR 247
G VL++G G+G L +VG GKV ++ + LE ARK V+ AE +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS 138
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 48.9 bits (116), Expect = 4e-07
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 163 YPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYT 222
ID Y ++ L+ G +LE+G GSG +++ + G +
Sbjct: 95 SEIDASY------------IIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTV 140
Query: 223 IEHIPELLEAARKRVK 238
+E + L+ A +
Sbjct: 141 VERDEDNLKKAMDNLS 156
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 47.7 bits (113), Expect = 9e-07
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234
P Y + H ++++G G G T + ++ + +++ A
Sbjct: 19 PSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAE 78
Query: 235 KRVKAKAETYIKRINF 250
+ +TY K ++F
Sbjct: 79 VIKEGSPDTY-KNVSF 93
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 46.8 bits (111), Expect = 2e-06
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
G KVLE G G G T + A ++ +I+ PE LE AR+ + IK +
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVIL-AKNNPDAEITSIDISPESLEKARENTEKNG---IKNV 89
Query: 249 NF 250
F
Sbjct: 90 KF 91
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 45.4 bits (108), Expect = 2e-06
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
L + +++ G G+G+ K+Y I+ L+ +++
Sbjct: 9 YLPNI--FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFD 60
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 46.1 bits (108), Expect = 4e-06
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 175 PPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAAR 234
P L +L G VL++G G+LT G ++ ++ L+ +AR
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSAR 87
Query: 235 KRVKAKAETYIK 246
+ ++ ++
Sbjct: 88 QNIRHYLSEELR 99
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 45.1 bits (106), Expect = 7e-06
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
H L HL+ G V + G ++ I++ PE L+ A +
Sbjct: 105 HGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA 164
Query: 239 A 239
Sbjct: 165 G 165
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 45.0 bits (106), Expect = 7e-06
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI----EHIPELLEAARKRVKAKAETYI 245
+K G+K+LEIG G G L+ + VG SG V I L + A
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG 100
Query: 246 KRINF 250
R+
Sbjct: 101 DRLTV 105
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 44.5 bits (105), Expect = 9e-06
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 11/113 (9%)
Query: 136 VRVVEAMREVDKEEFAPMDPLDKGHYDYPIDL--GYGTWMEPPYQHCLVLELLSGHLKYG 193
V+V E M + + E A + +D + M ++ ++K
Sbjct: 1 VKVGECMTKFNWHESA------EKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKE 54
Query: 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246
+VL++G G GY T K ++ +++ ++R + ++IK
Sbjct: 55 AEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGEGPDLSFIK 104
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 44.7 bits (105), Expect = 1e-05
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 176 PYQHCLVLELLSG----HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLE 231
Y+ L LL G +K GD++L +G SG + ++G G++Y +E P ++
Sbjct: 57 AYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116
Query: 232 AARKRVK 238
V+
Sbjct: 117 DLLTVVR 123
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 43.9 bits (103), Expect = 1e-05
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 159 GHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 218
G Y +P + + P LS L +VLE G G G FG
Sbjct: 19 GGYRHP----WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---A 71
Query: 219 KVYTIEHIPELLEAARKRV 237
+ + PELL+ AR
Sbjct: 72 RWAAYDFSPELLKLARANA 90
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
LEL++ + G +L++G+ YL + G E + ++A K V+A
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 42.3 bits (100), Expect = 4e-05
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250
+ I +G + + + + I+ E A+ + +A R+ F
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR-EAGYSPSRVRF 113
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 41.8 bits (98), Expect = 7e-05
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
L+ ++ ++ G ++L++G+ YL +F +G E + ++A K V
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE 67
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 41.4 bits (98), Expect = 9e-05
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
V+ G G G + F + IS +V I+ + +E AR+
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 41.1 bits (97), Expect = 1e-04
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
+LEIGT GY +++ A + V TIE +++ A++ + + ++ E
Sbjct: 74 NILEIGTAIGY-SSMQFASISDDIHVTTIERNETMIQYAKQNLA-TYH-FENQVRIIE 128
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 41.0 bits (96), Expect = 2e-04
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
LE ++ ++ +++ +IG+ YL F + E + ++A+K+V++
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS 67
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 40.2 bits (94), Expect = 2e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243
+ L+ L V++ G+G T + G+S KVY + + L +R+ +
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDTAF---LAGLSKKVYAFDVQEQALGKTSQRLS---DL 67
Query: 244 YIKRINFY 251
I+
Sbjct: 68 GIENTELI 75
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.2 bits (94), Expect = 3e-04
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
+VL+IG G+G+ F V + ++ E++E A + K
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEK 66
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 169 YGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPE 228
Y W L L + +EIG G+G +G +E
Sbjct: 24 YERWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIKIG-------VEPSER 76
Query: 229 LLEAARKR----VKAKAE 242
+ E ARKR +K AE
Sbjct: 77 MAEIARKRGVFVLKGTAE 94
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.8 bits (93), Expect = 3e-04
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
++IG+G G L+ + ++ + E A K RI +
Sbjct: 44 AGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALK--NIADANLNDRIQIVQ 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 68/197 (34%)
Query: 91 TYSINLATD-----KILQEKYMAI----TDYV----EPAAYKTHFMVNDLIGK--GYVKS 135
+ + + T LQE++ I T+ EP +L+GK GYV
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT------PAELVGKFLGYV-- 68
Query: 136 VRVVEAMREVDKEEFAPMDPLDK---GHYDYPI----DLGYGTWMEPPYQHCLVLELLSG 188
V+ + D + ++ D+ H L +LL
Sbjct: 69 ------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----------HALAAKLLQE 111
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK-------- 240
+ K E+ + A + ++ + + + L A + A+
Sbjct: 112 NDTTLVKTKEL------IKNYITARI-MAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQ 163
Query: 241 --AETYIK--RINFYEI 253
+ Y + R + Y+
Sbjct: 164 GNTDDYFEELR-DLYQT 179
Score = 31.9 bits (72), Expect = 0.20
Identities = 45/260 (17%), Positives = 83/260 (31%), Gaps = 83/260 (31%)
Query: 4 YMLWSAFIS-----LVQLGVY-VKCFSNETGYETPAGWHGNVNSDELRRVIT-DENV--- 53
Y+L S IS ++QL Y V G+ TP G + L+ + +
Sbjct: 230 YLL-SIPISCPLIGVIQLAHYVVTA--KLLGF-TP----GELR-SYLKGATGHSQGLVTA 280
Query: 54 -------TIPGFDPMMMNKFR-----GFMGQ----VQTLNDDN--DATVDRYNTPTY--S 93
+ F + G +L D+ + P+ S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 94 I-NLATDKILQEKYMAITDYVEPAAYKTHF-MVN------------DLIGKGYVKSVRVV 139
I NL +++ + Y+ T+ PA + +VN L G ++R
Sbjct: 341 ISNLTQEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL--YGLNLTLRKA 396
Query: 140 EAMREVD--KEEFAPMDPLDKGHYDY-PIDLGYGTWMEPPYQHCLVLE---------LLS 187
+A +D + F+ K + P+ P+ H +L L+
Sbjct: 397 KAPSGLDQSRIPFSERKL--KFSNRFLPVAS--------PF-HSHLLVPASDLINKDLVK 445
Query: 188 GHLKYGDKVLEI---GTGSG 204
++ + K ++I T G
Sbjct: 446 NNVSFNAKDIQIPVYDTFDG 465
Score = 30.8 bits (69), Expect = 0.53
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 12/89 (13%)
Query: 170 GTWMEPPYQHCL-VLELL-----SGHLKYGDKVLEIGTGSGYLTTLFGA---MVGISGKV 220
+W E + + +L + Y + L L G M+ IS
Sbjct: 287 DSW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-- 343
Query: 221 YTIEHIPELLEAARKRVKAKAETYIKRIN 249
T E + + + + A + I +N
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV-KAKAETYIKRI 248
K L++GT +GY + G+V T E + E R +A+AE I
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLR 126
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 39.8 bits (93), Expect = 4e-04
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRV 237
L G L G+ +LE+G G+GY + +E +L R+R
Sbjct: 27 ERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRRRA 76
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254
+++EIGT +GY + F + + GK+ + E ARK Y K I
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK--------YWKENGLENKI 114
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 39.2 bits (92), Expect = 5e-04
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254
K +E+G +GY L + GK+ I+ E E +I++ I
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP--------FIRKAGVEHKI 124
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 39.3 bits (92), Expect = 5e-04
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254
+EIG +GY + GK+ ++ E E IK+ I
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP--------VIKKAGVDHKI 133
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 39.2 bits (92), Expect = 6e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEII 254
KVLE+GT +GY + G+V T + + A Y + I
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP--------YWREAKQEHKI 114
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 39.1 bits (91), Expect = 6e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 160 HYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGK 219
YD + + E + +LE + K VLE G G+G LT
Sbjct: 15 TYDSFVQGEDIQYKEVFAHYEDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAG---RT 69
Query: 220 VYTIEHIPELLEAARKRVKAKAE 242
VY IE E+ A++++ +
Sbjct: 70 VYGIEPSREMRMIAKEKLPKEFS 92
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 38.8 bits (91), Expect = 7e-04
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
+LEIGT GY T + G+V T+E + + AR
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 38.8 bits (91), Expect = 7e-04
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
+VLEIG GY + G++ + P A+K
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK 115
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 38.8 bits (91), Expect = 8e-04
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
KV++IGT +GY G + G + T + + A++
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE 107
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 38.7 bits (90), Expect = 8e-04
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
V+ L +V+++G G G L + ++ ++ LE A++R+
Sbjct: 18 MNGVVAALKQS--NARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQERLD 74
Query: 239 AK--AETYIKRINFYE 252
+R+ +
Sbjct: 75 RLRLPRNQWERLQLIQ 90
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 38.5 bits (89), Expect = 9e-04
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 236
+K G VL +G SG + +VG GK++ IE P EL+ +R
Sbjct: 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER 121
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 161 YDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 220
YD Y ++ E + VLE+ G G LT F +G +V
Sbjct: 51 YDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPF-LDLGW--EV 107
Query: 221 YTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
+E +L A RKR+ R +
Sbjct: 108 TALELSTSVLAAFRKRLAEAPADVRDRCTLVQ 139
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 38.1 bits (88), Expect = 0.001
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 236
H+K G KVL +G SG + +VG G VY +E +L+ A+KR
Sbjct: 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR 125
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 38.0 bits (88), Expect = 0.001
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 161 YDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKV 220
Y Y + +E + LL ++K KVL++ G G + L +V
Sbjct: 13 YTDINSQEYRSRIE------TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEV 63
Query: 221 YTIEHIPELLEAARKRVKAK 240
++ +++ AR+ K++
Sbjct: 64 VGVDISEDMIRKAREYAKSR 83
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.4 bits (89), Expect = 0.001
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
LE+G G+G + A + ++ +LE R+++
Sbjct: 40 EPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAG 83
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 37.7 bits (88), Expect = 0.001
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
CL++ L D +++G G+G +T + G +VY I+ PE + ++
Sbjct: 23 CLIMCLAE--PGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRNPEAISTTEMNLQR 77
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 169 YGTWMEPPY---QHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEH 225
Y + E P H L+ L +LK +VL++G G+G + +V ++
Sbjct: 28 YDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDP 84
Query: 226 IPELLEAARKR 236
E+LE AR++
Sbjct: 85 SKEMLEVAREK 95
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
++LEIGT GY T + G++ T+E + AR+
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 73/221 (33%)
Query: 59 DPMMMNKFRGFMGQVQTLNDDNDATVDRYNTPTYSINLATDKILQEKYMAITDYVEPAAY 118
P MM + ++ Q L +DN +YN L + L E + PA
Sbjct: 104 QPSMMTRM--YIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQALLE--------LRPAKN 152
Query: 119 KT-HFMVNDLIGKGYVKSVRVVEAMREVDKEEFAP------------------------- 152
+ +G G K+ ++ +
Sbjct: 153 VLIDGV----LGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 153 --MDPLDKGHYDYPIDLGYGT----------WMEPPYQHCL-VLELL--SGHLKYGD--- 194
+DP D+ ++ PY++CL VL + + +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 195 KVLEIGTGSGYLTT----LFGAMVGISGKVYTIEHIPELLE 231
K+L LTT + + + +++H L
Sbjct: 267 KIL--------LTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Score = 34.4 bits (78), Expect = 0.031
Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 55/151 (36%)
Query: 38 NVNSDELRR-----VITDENVTIP------------GFDPM-MMNKFRGFMGQVQTLNDD 79
+ E R+ + + IP D M ++NK
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH------------ 412
Query: 80 NDATVDRYNTP-TYSINLATDKILQEKYMAITDYVEPAAYKTHFMVNDLIGKGYVKSVRV 138
+ V++ T SI ++ + Y H ++ Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVK---------LENEYALH---RSIVDH-Y------ 453
Query: 139 VEAMREVDKEEFAPMDPLDKGHYDYPIDLGY 169
+ D ++ P LD+ Y + +G+
Sbjct: 454 -NIPKTFDSDDLIP-PYLDQYFYSH---IGH 479
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 37.9 bits (88), Expect = 0.002
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
LK ++VL++ TG G++ F V KV + ++L+ AR ++ +++
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG---HQQV 87
Query: 249 NF 250
+
Sbjct: 88 EY 89
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 37.6 bits (87), Expect = 0.002
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 153 MDPLDKGHYDYPIDLGYGTWMEPPYQHC----LVLELLS--GHLKYGDKVLEIGTGSGYL 206
M +K +D+ ++L + Q + L+ LS +L + +IG G+G
Sbjct: 1 MSNENKTIHDFELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQ 60
Query: 207 TTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
T + V G+V ++ + ++ + +
Sbjct: 61 TMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQS 92
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
VLE+G GY ++ ++ T+E P+ ++
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 37.1 bits (86), Expect = 0.003
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 18/91 (19%)
Query: 160 HYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLF---GAMV-G 215
+ + G ++L +L ++VL++G G G+L G G
Sbjct: 23 AWIDAVRHGAIESRRQVTDQAILLAILGRQ---PERVLDLGCGEGWLLRALADRGIEAVG 79
Query: 216 I--SGKVYTIEHIPELLEAARKRVKAKAETY 244
+ L++AAR +
Sbjct: 80 VDGD---------RTLVDAARAAGAGEVHLA 101
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 36.9 bits (86), Expect = 0.003
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 195 KVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
++LEIGT GY + + A + +IE E A K
Sbjct: 57 RILEIGTAIGY-SAIRMAQALPEATIVSIERDERRYEEAHK 96
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 37.0 bits (85), Expect = 0.003
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTT----LFGAMVGI--SGKVYTIEHIPELLEAARKR 236
L +++ G+G T F ++G+ S LE A K
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVS---------KSALEIAAKE 97
Query: 237 VKAKAETY 244
A +Y
Sbjct: 98 NTAANISY 105
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 36.8 bits (85), Expect = 0.004
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
LE L VLE+ +G+GY T + +V ++ E++ A +
Sbjct: 37 ALERLRAGNI-RGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNV 92
Query: 242 ET 243
E
Sbjct: 93 EF 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 35.7 bits (82), Expect = 0.007
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ L L L+ + +IG GS + ++ + + +G+++ +E P+ L R +K
Sbjct: 31 VTLSKL--RLQDDLVMWDIGAGSASV-SIEASNLMPNGRIFALERNPQYLGFIRDNLKK 86
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 35.9 bits (83), Expect = 0.007
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 160 HYDYPIDLGYGTWMEPPYQHCL-VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 218
YD P + V ++ +L++G G+G L+
Sbjct: 16 KYDEQRR-----KFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYP-EA 69
Query: 219 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
++ ++LE A+ R + ++ + E
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIE 98
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 35.5 bits (82), Expect = 0.007
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
K + + +IG GSG + + E E E
Sbjct: 23 PKPHETLWDIGGGSGSIAIEW-LRSTPQTTAVCFEISEERRERILS 67
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 36.0 bits (83), Expect = 0.007
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 31/102 (30%)
Query: 160 HYDYPIDLGYGTWMEPPY-----------------QHCLVLELLSGHLKYGDKVLEIGTG 202
HY +P + Q +++ L G D +++ G G
Sbjct: 70 HYGIGPVD-RAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHL-GQAGPDDTLVDAGCG 127
Query: 203 SG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239
G FG+ V G+ T+ + +R +
Sbjct: 128 RGGSMVMAHRRFGSRVEGV-----TLS--AAQADFGNRRARE 162
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 35.2 bits (81), Expect = 0.012
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 186 LSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI 245
L K+ +IG G+G T V G++ I+ P+ +E + A
Sbjct: 40 FINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNEN--AVKANCA 95
Query: 246 KRINF 250
R+
Sbjct: 96 DRVKG 100
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 35.4 bits (82), Expect = 0.013
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
L+ D VLE+G G+G +T ++ + KV E P L+ KRV+
Sbjct: 25 ALRPTDVVLEVGPGTGNMTV---KLLEKAKKVVACELDPRLVAELHKRVQG 72
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 35.4 bits (82), Expect = 0.013
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 187 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246
+ +K D VLEIG G+G LT ++ ++ KV TI+ ++ +KR + ++
Sbjct: 37 AAKIKSSDIVLEIGCGTGNLTV---KLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLE 93
Query: 247 RIN 249
Sbjct: 94 VYE 96
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 34.8 bits (80), Expect = 0.013
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
L L L + G+ + +IG GSG ++ + G+ TIE + +E +K
Sbjct: 45 ALTLAAL--APRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQK 95
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 34.8 bits (80), Expect = 0.014
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLF---GA-MVGI--SGKVYTIEHIPELLEAARKRV 237
L+ G K+L+ G G G + G ++G P L++ A++
Sbjct: 38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLD---------PILIDYAKQDF 88
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.8 bits (80), Expect = 0.014
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 157 DKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGI 216
D + Y + + H ++ + + +LE+G+ G T+ +
Sbjct: 14 DTAGHKYAYNFDFDVM------HPFMVRAFTPFFR-PGNLLELGSFKGDFTS---RLQEH 63
Query: 217 SGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253
+ +E E + A+ R+K R ++
Sbjct: 64 FNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL 100
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 34.8 bits (79), Expect = 0.015
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAET 243
E L + + +LE G+G +T+ A V ++E + + A
Sbjct: 22 EALRMAYEEAEVILEYGSGG---STVV-AAELPGKHVTSVESDRAWARMMKAWLAANPPA 77
Query: 244 YIKRINFYEI 253
+N
Sbjct: 78 EGTEVNIVWT 87
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 35.1 bits (81), Expect = 0.015
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 159 GHYDYPIDL---GYGTWMEPPYQHCLVLELLS-GHLKYGDKVLEIGTGSG----YLTTLF 210
+ D + + +G ++LS L KVL+IG+G G Y+ +
Sbjct: 18 QYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY 77
Query: 211 GAMV-GISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYEI 253
GA GI I ++ A +RV + + +
Sbjct: 78 GAHTHGI-----DIC--SNIVNMANERVSGNNKIIFEANDILTK 114
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 35.1 bits (81), Expect = 0.016
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
+L+LL+ + G+ +L++G G+G LT +V ++ ++E AR+
Sbjct: 49 LLQLLN--PQPGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQN 98
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 34.8 bits (80), Expect = 0.016
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 178 QHCLVLELLSG-HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
+ +LL+ L+ ++G G G T L G + I+ ++LE A R
Sbjct: 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR 76
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 34.9 bits (80), Expect = 0.017
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 190 LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYI-KRI 248
++ ++G G+G A + + +V E E+ E AR+ ++ RI
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 249 NFYE 252
E
Sbjct: 93 EVLE 96
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 34.7 bits (80), Expect = 0.017
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 161 YD--YPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG 218
YD D+ Y W + ++E + D L++ G+G LT
Sbjct: 10 YDKLIRADVDYKKWSD------FIIEKCVENNLVFDDYLDLACGTGNLTENL-CPKFK-- 60
Query: 219 KVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
+ ++ E+L A K + +
Sbjct: 61 NTWAVDLSQEMLSEAEN----KFRSQGLKPRLAC 90
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.5 bits (79), Expect = 0.018
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAKA 241
L G L G K+LE+G G+GY A G V + PEL A +R+
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELAAEASRRLGRPV 89
Query: 242 ET 243
T
Sbjct: 90 RT 91
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 34.6 bits (79), Expect = 0.018
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARK 235
++ L + ++ G KVL +G SG + ++ ++GK Y +E P ELL A++
Sbjct: 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR 123
Query: 236 R 236
R
Sbjct: 124 R 124
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 34.5 bits (80), Expect = 0.018
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYL 206
L + + + V ++GTGSG L
Sbjct: 49 LAMLGIERAMVKPLTVADVGTGSGIL 74
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 34.4 bits (80), Expect = 0.024
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 189 HLKYGDKVLEIGTGSGYLTT-LFGAMVGISGKVYTIEH----IPELLEAARKRVK 238
+ G++++EIG G G LT + + ++ +E I L + + ++
Sbjct: 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLE 93
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 34.8 bits (79), Expect = 0.026
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
L+ + +++ G GSG L + ++ P+ L A K + K
Sbjct: 713 ALKHIRES--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770
Query: 242 ETYIKRINFYEII 254
+ +
Sbjct: 771 NKEACNVKSATLY 783
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.0 bits (78), Expect = 0.028
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
+ ++ +L+ D++L+IG GSG ++ + V I+ E + A +
Sbjct: 17 SLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKG---YSVTGIDINSEAIRLAETAAR 73
Query: 239 AK--AETYIKRINFYE 252
+ + + F
Sbjct: 74 SPGLNQKTGGKAEFKV 89
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 34.1 bits (78), Expect = 0.028
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR----- 236
++ LL+ L G + +IG G+G + VY +E + + A
Sbjct: 26 IINLLN--LPKGSVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEW 80
Query: 237 VKAKAE 242
AE
Sbjct: 81 FTGYAE 86
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 34.1 bits (78), Expect = 0.029
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIK 246
VL++G G G+ KV I+ +L A+++ + Y +
Sbjct: 45 QKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTTSPVVCYEQ 96
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 33.5 bits (76), Expect = 0.040
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP----ELLEAARKR 236
+K K+L +G +G T A + G VY IE+ P ELL+A +R
Sbjct: 71 PIKRDSKILYLGASAGT-TPSHVADIADKGIVYAIEYAPRIMRELLDACAER 121
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 33.7 bits (77), Expect = 0.041
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR---VKA 239
L + K +VL+IG G G L GI + ++ ++++ + VK+
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGEFLELC-KEEGI--ESIGVDINEDMIKFCEGKFNVVKS 88
Query: 240 KAETYIKRI--NFYEIIV 255
A Y+K + + + ++
Sbjct: 89 DAIEYLKSLPDKYLDGVM 106
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 33.4 bits (76), Expect = 0.047
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 179 HCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
V+ +L KV+++G G G L +L ++ ++ +LE A+ R+K
Sbjct: 18 LGTVVAVLKSV--NAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLK 74
Query: 239 AK--AETYIKRINFYE 252
E KRI+ ++
Sbjct: 75 IDRLPEMQRKRISLFQ 90
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 33.4 bits (77), Expect = 0.052
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYL 206
L L+ L+ HL+ GDKVL++GTGSG L
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGVL 134
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 33.2 bits (76), Expect = 0.053
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 177 YQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
Y + + LL K +VL+IG SG L A+ +V IE PE E A+++
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGA---AIKENGTRVSGIEAFPEAAEQAKEK 73
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 33.2 bits (76), Expect = 0.054
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
+ +L + G +++++G G G+ V ++ ++L AR
Sbjct: 35 LRAML-PEVG-GLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTG 90
Query: 242 ETYI 245
TY
Sbjct: 91 ITYE 94
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 32.9 bits (75), Expect = 0.062
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 149 EFAPMDPLDKGHYDYPIDLGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTT 208
E A DP L + + L L L SG LEIG +G T
Sbjct: 20 ELANDDPWR---------LDDNPFERERHTQLLRLSLSSGA---VSNGLEIGCAAGAFTE 67
Query: 209 LFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
+ ++ I+ +P + A +R K +
Sbjct: 68 ---KLAPHCKRLTVIDVMPRAIGRACQRTKRWS 97
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 32.5 bits (75), Expect = 0.082
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSG 204
+ L+ L+ G+ LEIGTG
Sbjct: 46 YIFLKTF---LRGGEVALEIGTGHT 67
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 32.7 bits (74), Expect = 0.10
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
H+ VL++G G+G L ++F A G + KV ++ L +A K E I I
Sbjct: 61 HIFKDKVVLDVGCGTGIL-SMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLI 118
Query: 249 N 249
Sbjct: 119 K 119
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 31.8 bits (73), Expect = 0.11
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
+ + L +L D V+++G GSG + T+ A VY I+++ +E ++
Sbjct: 26 VSIGKL--NLNKDDVVVDVGCGSGGM-TVEIAKRC--KFVYAIDYLDGAIEVTKQ 75
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 32.2 bits (74), Expect = 0.11
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 187 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
S +L D VLEIG G G LT + + KVY IE L A K +
Sbjct: 45 SANLTKDDVVLEIGLGKGILTE---ELAKNAKKVYVIEIDKSLEPYANKLKE 93
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 31.7 bits (72), Expect = 0.11
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
+++ L VL++GT +G +T + V + + LE+ R
Sbjct: 12 TLMDALEREGLEMKIVLDLGTSTGVIT----EQLRKRNTVVSTDLNIRALESHRG 62
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 32.2 bits (73), Expect = 0.11
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
VL+ G G G K Y IE L+ A +
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSREN 69
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 31.9 bits (72), Expect = 0.13
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 184 ELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
LL L+ D++L +G G+ L+ + G V ++++ ++ A +
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYEL-FLGGFP-NVTSVDYSSVVVAAMQACYA 86
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 32.0 bits (72), Expect = 0.14
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 167 LGYGTWMEPPYQHCLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHI 226
G + + S + L+ G G G +T + +E +
Sbjct: 69 GGMD-HVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPV 125
Query: 227 PELLEAARKRVKAKAETYIKRINFY 251
+LE A++ + + F
Sbjct: 126 KHMLEEAKRELAG-----MPVGKFI 145
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.0 bits (72), Expect = 0.16
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 151 APMDPL--DKGHY--DYPIDLGYGTWMEPPYQ--HCLVLELLS--GHLKYGDKVLEIGTG 202
+ M L D G Y + L + T + + + ++ G K K+L IG G
Sbjct: 3 SSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGG 62
Query: 203 SGYLT-----TLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINF 250
+G + + G+ +E E + ++ V + ++ + F
Sbjct: 63 AGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKF 113
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 31.4 bits (72), Expect = 0.20
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 187 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
+LK D V EIGTG G+LTT + IS +V +IE L + +++K
Sbjct: 24 QLNLKETDTVYEIGTGKGHLTT---KLAKISKQVTSIELDSHLFNLSSEKLK 72
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 31.3 bits (72), Expect = 0.25
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 187 SGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 224
+ L D + EIG+G G+ T +V V IE
Sbjct: 25 NIRLNEHDNIFEIGSGKGHFTL---ELVQRCNFVTAIE 59
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 31.3 bits (71), Expect = 0.26
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
+ +L+ +L++ G+G F +E ++L ARKR+
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHF-TKEFG--DTAGLELSEDMLTHARKRLP 83
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 31.0 bits (71), Expect = 0.28
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
+ + G ++EIG G LT + ++ IE +L +
Sbjct: 18 NPQKGQAMVEIGPGLAALT---EPVGERLDQLTVIELDRDLAARLQTH 62
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 30.9 bits (70), Expect = 0.30
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFYE 252
K++++ +G+G + L K+ +E L + A++ V +I E
Sbjct: 50 KGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIE 105
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 31.0 bits (70), Expect = 0.34
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 178 QHCLVLEL-LSGHLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLE 231
L EL ++G L+ K L++G G G +L FG + + I P +
Sbjct: 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCL-----NIA--PVQNK 119
Query: 232 AARKRVKA 239
+
Sbjct: 120 RNEEYNNQ 127
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 30.5 bits (69), Expect = 0.35
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 193 GDKVLEIGTGSGYLTTLF---GAMVGISGKVYTIEHIPELLEAARKRV 237
+L++G+G+G T G ++ +E L+E AR+
Sbjct: 42 DGVILDVGSGTGRWTGHLASLGH------QIEGLEPATRLVELARQTH 83
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 30.9 bits (70), Expect = 0.35
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARK 235
+ +L +K G ++L++G+GSG G GI + A++
Sbjct: 27 TLGRVL--RMKPGTRILDLGSGSGEMLCTWARDHGITGTGI-----DMS--SLFTAQAKR 77
Query: 236 RVKA 239
R +
Sbjct: 78 RAEE 81
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 30.8 bits (69), Expect = 0.42
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRI 248
L VL++G G+G L ++F A G V ++ + A I +
Sbjct: 35 DLFKDKIVLDVGCGTGIL-SMFAAKHGAK-HVIGVDMSSIIEMAKELVELNGFSDKITLL 92
Query: 249 N 249
Sbjct: 93 R 93
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 30.6 bits (69), Expect = 0.43
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKR 236
+ L+ H +L++ G+G V +E ++L AR+R
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS-FG--TVEGLELSADMLAIARRR 91
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 30.6 bits (68), Expect = 0.53
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
H G VL++GTGSG L ++ A G KVY +E + + AR VKA
Sbjct: 60 HHFEGKTVLDVGTGSGIL-AIWSAQAGAR-KVYAVEATK-MADHARALVKA 107
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 30.1 bits (68), Expect = 0.63
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 190 LKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239
++ GD+VL++G G G L T V GI +I + A R A
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGI-----SIS--RPQVNQANARATA 106
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 30.0 bits (67), Expect = 0.63
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIP 227
HL VL++G+G+G L +F A G KV IE
Sbjct: 63 HLFKDKVVLDVGSGTGIL-CMFAAKAGAR-KVIGIECSS 99
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 30.1 bits (67), Expect = 0.64
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
VL++G GSG L + F A G K+Y +E + + A VK+
Sbjct: 155 TDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVLVKS 202
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 30.0 bits (67), Expect = 0.68
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
VL++G GSG L + F A G K+Y +E + + A VK+
Sbjct: 47 TDFKDKIVLDVGCGSGIL-SFFAAQAGAR-KIYAVEAST-MAQHAEVLVKS 94
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.8 bits (67), Expect = 0.71
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 166 DLGYGTWMEPPYQHC-LVLELLSGH-LKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTI 223
D Y +E V E+ + +VL++ G+G T A G +V +
Sbjct: 13 DTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL-AERGY--EVVGL 69
Query: 224 EHIPELLEAARKRVKAKAETYIKRINFYE 252
+ E+L AR+ KA+ +I F +
Sbjct: 70 DLHEEMLRVARR----KAKERNLKIEFLQ 94
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 29.8 bits (66), Expect = 0.76
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 191 KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242
++ +++GTG G A+ + I+ + E L K++ K
Sbjct: 23 QFDRVHIDLGTGDGRNIYKL-AINDQNTFYIGIDPVKENLFDISKKIIKKPS 73
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 29.5 bits (66), Expect = 1.1
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
+ E L G +VL++G G G LT + + +V +E + + +K ++A
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTL---PLARMGAEVVGVEDDLASVLSLQKGLEA 277
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 29.3 bits (66), Expect = 1.1
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISG-KVYTIEHIPELLEAARKRVKAK 240
+ + ++ G ++ +IG G+G T L +V ++ E+LE A+++
Sbjct: 24 VAWVLEQVEPGKRIADIGCGTGTATLLL-----ADHYEVTGVDLSEEMLEIAQEKAMET 77
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 29.0 bits (66), Expect = 1.2
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 189 HLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIE 224
H + D ++EIG G G LT ++ + +E
Sbjct: 26 HPQKTDTLVEIGPGRGALTD---YLLTECDNLALVE 58
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 29.4 bits (65), Expect = 1.3
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAETYIKRINFY 251
G KV+++ G G F A++ + + IE E AAR + K +N
Sbjct: 94 GTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHNIPL-LLNEGKDVNIL 148
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 28.9 bits (64), Expect = 1.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 185 LLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVK 238
L+ + K GD VL++G G G + GI + Y ++ + AR R +
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKY-ERAGIG-EYYGVDIAEVSINDARVRAR 108
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 28.7 bits (64), Expect = 1.8
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 184 ELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKA 241
HL +++++G G+G + + KV ++ P + ++R V+
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRLNVETNM 270
Query: 242 ETYIKRINFYE 252
+ R F
Sbjct: 271 PEALDRCEFMI 281
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.7 bits (65), Expect = 2.1
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 27 TGYETPAGWHGNVNSDELRRVITDENVTI-PGFDPMMMNKFR-GFMGQVQT 75
P G V++D L R + E V + G P R G MG+
Sbjct: 289 LVVRPPEG----VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGAR 335
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 28.1 bits (62), Expect = 2.5
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242
+ L+ G G G +T + +V ++ + L A+ + +
Sbjct: 70 FLREGPNKTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEG- 126
Query: 243 TYIKRINFYE 252
+ N++
Sbjct: 127 --KRVRNYFC 134
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 28.3 bits (62), Expect = 2.5
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
L LE L L KV + + SG F K Y + + +E ++
Sbjct: 40 VLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE 95
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 27.5 bits (62), Expect = 3.2
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSG 204
+ L + G +V+++GTGSG
Sbjct: 20 EAIRFLK-RMPSGTRVIDVGTGSG 42
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 27.8 bits (63), Expect = 3.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 187 SGHLKYGDKVLEIGTGSGYLT 207
+++ G+ V+E+G G+G LT
Sbjct: 26 ELNIEEGNTVVEVGGGTGNLT 46
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 28.0 bits (62), Expect = 3.4
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 182 VLELLSGHLKY-GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
++ L L VL+IG G GY T F + + ++ ++AA KR
Sbjct: 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQ 131
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 27.5 bits (62), Expect = 4.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSG 204
CLV + L+ + ++L++GTG+G
Sbjct: 97 CLVEQALARLPEQPCRILDLGTGTG 121
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 27.3 bits (60), Expect = 4.3
Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 37 GNVNSDELRRVITD-ENVTIPGFDPMMMNKFRGFMGQVQTLNDDNDATVDRYNTPTYSIN 95
G +++ EL+ + D P ++++ M ++ + + D +D N +
Sbjct: 119 GYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAM--MKIFDKNKDGRLD-LNDLARILA 175
Query: 96 LATDKILQEKYMAITDYVEPAAYKTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDP 155
L + +LQ K A + ++ F D+ G ++ V ++++ + +
Sbjct: 176 LQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISG 235
Query: 156 LD 157
D
Sbjct: 236 GD 237
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 184 ELLSGHL--KYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
++L ++ D +L++G G G + A+ + ++ A++ +K
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVIGI---ALADEVKSTTMADINRRAIKLAKENIKL 96
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 27.6 bits (61), Expect = 4.6
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAK 240
KVL++ G G + +F + +E L + + +
Sbjct: 59 ELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEGS 105
>1y9l_A Lipoprotein MXIM; cracked beta barrel, mixed alpha/beta, lipid
binding protein; HET: UND; 1.50A {Shigella flexneri}
PDB: 1y9t_A* 2jw1_A
Length = 115
Score = 26.6 bits (58), Expect = 4.6
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 5 MLWSAFISLVQLGVYVKCFSNETGYETPAG-WHGNVNSDELRRVITD 50
+LWS + + VY KC S + Y AG + GN N E+ D
Sbjct: 25 LLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMD 71
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for
struc genomics of infectious diseases, PSI, protein
structure INI; HET: MSE NAP; 1.90A {Salmonella enterica
subsp} PDB: 1o89_A 1o8c_A*
Length = 324
Score = 27.3 bits (61), Expect = 5.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 118 YKTHFMVNDLIGKGYVKSVRVVEAMREVDKEEFAPMDPLDKGHYDYPID 166
Y+ + GY+KS+ A R + ++EFA PL+K + ID
Sbjct: 172 YQVAAVSGRESTHGYLKSL---GANRILSRDEFAESRPLEKQLWAGAID 217
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 27.2 bits (59), Expect = 6.0
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 183 LELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKAKAE 242
LE + K VL++G G G + K+ + ++ ++R +
Sbjct: 25 LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKN 82
Query: 243 TYIKRINF 250
F
Sbjct: 83 RRDSEYIF 90
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 26.8 bits (58), Expect = 6.3
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 193 GDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARK 235
G +VLE+G G + + + IE + + R
Sbjct: 61 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRD 101
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 26.7 bits (60), Expect = 6.5
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 181 LVLELLSGHLKYGDKVLEIGTGSG 204
L LEL+ V +IGTGSG
Sbjct: 114 LALELIRK--YGIKTVADIGTGSG 135
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 27.1 bits (60), Expect = 6.6
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 180 CLVLELLSGHLKYGDKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
L+ L + L+ G+ + GSG + + A + R +
Sbjct: 284 SLISLLENRDLQAGETIGLFSYGSGSVGEFYSATL--VEGYKDHLDQAAHKALLNNRTEV 341
Query: 240 KAETYIKRINFYE 252
+ Y ++
Sbjct: 342 SVDAYETFFKRFD 354
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 26.7 bits (60), Expect = 6.7
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 194 DKVLEIGTGSGYLTTLFGAMVGISGKVYTIEHIPELLEAARKRVKA 239
V E+G G G LT A++ +V IE L + +
Sbjct: 48 GPVFEVGPGLGALT---RALLEAGAEVTAIEKDLRLRPVLEETLSG 90
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 26.8 bits (60), Expect = 6.7
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 189 HLKYGDKVLEIGTGSG----YLTTLFGAMV-GISGKVYTIEHIPELLEAARKRVKA 239
LK G +L+IG G G F V G+ T+ + + +
Sbjct: 87 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGL-----TLSK--NQHARCEQVLAS 135
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 26.6 bits (58), Expect = 7.1
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 140 EAMREVDKEEFAPMDPLDKGHYDYPIDLGYGTWMEPP---------YQHCL--VLELLSG 188
E + M P++ +D+ Y ++E ++ + ++
Sbjct: 120 EFKNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQAAVND 179
Query: 189 HLKYGDKVL 197
K G V+
Sbjct: 180 TEKDGGNVI 188
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 26.9 bits (60), Expect = 8.3
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 182 VLELLSGHLKYGDKVLEIGTGSG--------YLT------TLFGAMVGISGKVYTIEHIP 227
+++ G K G +V+ + + L T+ + + +T+E+
Sbjct: 517 PEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPN 576
Query: 228 ELLEAARKRVKAKAETYIKRI 248
+ V+ + + RI
Sbjct: 577 MMRRLHELHVEELGDHFCSRI 597
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,199,667
Number of extensions: 259844
Number of successful extensions: 964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 168
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)