Query psy7846
Match_columns 281
No_of_seqs 265 out of 1785
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:19:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 100.0 9.2E-28 3.2E-32 220.7 15.7 132 18-162 2-140 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.9 1.7E-27 5.8E-32 218.9 16.3 138 41-248 1-144 (293)
3 2f69_A Histone-lysine N-methyl 99.0 3.5E-10 1.2E-14 102.3 5.7 55 26-90 3-60 (261)
4 2f69_A Histone-lysine N-methyl 98.9 3.9E-10 1.3E-14 102.0 4.1 53 60-113 4-59 (261)
5 3hvz_A Uncharacterized protein 8.1 1.4E+02 0.0048 21.1 1.3 22 251-272 50-71 (78)
6 4he6_A Peptidase family U32; u 7.8 1.6E+02 0.0053 20.9 1.5 19 252-270 24-42 (89)
7 2hj1_A Hypothetical protein; s 7.5 1.2E+02 0.0043 22.4 0.8 18 254-271 70-87 (97)
8 2jqj_A DNA damage response pro 7.1 6E+02 0.021 19.5 4.9 37 224-262 77-113 (151)
9 1oru_A YUAD protein; structura 7.1 1.8E+02 0.0063 23.9 1.8 21 252-272 167-187 (195)
10 3goe_A DNA repair protein RAD6 6.3 1.7E+02 0.0058 21.2 1.0 20 248-267 61-80 (82)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.95 E-value=9.2e-28 Score=220.69 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=124.7
Q ss_pred cCCCcEEEEEeecCCeeeeeEEEEecCCCEEEEEEecCeEeeeeeCCeeeeeEEEEEecCC-EEEEEEeCCeEeeeEEEE
Q psy7846 18 ENPLGQYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGD-TYSGAWFKGKRHGIGTYT 96 (281)
Q Consensus 18 ~~~g~~Y~G~~~~~g~~~G~G~~~~~dG~~YeG~~~~gk~~G~w~~g~~~G~G~~~~~nG~-~Y~G~w~~g~~~G~G~~~ 96 (281)
.+||++|+|+| +++++||+|+++|+||++|+| +|+++++||.|+++|+||+ +|+|+|+++++||.|+++
T Consensus 2 ~~~G~~Y~G~~-~~g~~~G~G~~~~~~G~~Y~G---------~~~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~ 71 (293)
T 1h3i_A 2 FFDGSTLEGYY-VDDALQGQGVYTYEDGGVLQG---------TYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIY 71 (293)
T ss_dssp CSSSCCCCEEE-ETTEEEEEEEEECTTSCEEEE---------EEETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEE
T ss_pred cCCCCEEEEEE-ECCEeeEEEEEEECCCCEEEE---------EEECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEE
Confidence 46899999999 999999999999999999999 6777779999999999999 999999999999999999
Q ss_pred EcCCCcEEEEEEE-ccceece-EEEEecCCCe-EEEEEEECCeee-eeEEEE--EcCCCcEEEEEEECCCCC
Q psy7846 97 YATLGVKLTCAWD-ADEITGG-GRLEYPMSGV-SFHGFFENNRPL-GKGVFV--FPRLNCMQLGIYSSPPPD 162 (281)
Q Consensus 97 ~~n~g~~Y~G~f~-~g~~~G~-G~~~~~dng~-~Y~G~w~n~~~~-G~G~~~--~~~dG~~y~G~w~~g~~~ 162 (281)
++| |.+|+|+|+ ++++||. |++++++ |. +|+|+|++++++ |.++++ ++ +|.++.|.|.+++.-
T Consensus 72 ~~~-G~~y~G~~~~~g~~~G~gG~~~~~~-G~~~y~G~~~~g~~~~G~~~~~~~~~-~g~~~~g~w~~g~~~ 140 (293)
T 1h3i_A 72 YPD-GGSLVGEVNEDGEMTGEKIAYVYPD-ERTALYGKFIDGEMIEGKLATLMSTE-EGRPHFELMPGNSVY 140 (293)
T ss_dssp CTT-SCEEEEECCTTSCSCEEEEEEECTT-SSEEEEEEEETTEEEEEEEEEEEECT-TTSCEEEECSSCCEE
T ss_pred ECC-CCEEEEEEeECCeEeCCeEEEEECC-CCEEEEEEEECCEEEccceEEEEecC-CcceEEeEEcCCceE
Confidence 999 999999999 9999999 9999995 88 699999999999 999998 67 999999999988764
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.95 E-value=1.7e-27 Score=218.91 Aligned_cols=138 Identities=17% Similarity=0.255 Sum_probs=123.5
Q ss_pred EecCCCEEEEEEecCeEeeeeeCCeeeeeEEEEEecCCEEEEEEeCCeEeeeEEEEEcCCCc-EEEEEEEccceeceEEE
Q psy7846 41 LHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYSGAWFKGKRHGIGTYTYATLGV-KLTCAWDADEITGGGRL 119 (281)
Q Consensus 41 ~~~dG~~YeG~~~~gk~~G~w~~g~~~G~G~~~~~nG~~Y~G~w~~g~~~G~G~~~~~n~g~-~Y~G~f~~g~~~G~G~~ 119 (281)
+|+||++|+| +|+++++||+|+++|+||++|+|+|+++++||.|++++++ +. +|+|+|+++++||.|++
T Consensus 1 ~~~~G~~Y~G---------~~~~g~~~G~G~~~~~~G~~Y~G~~~~g~~~G~G~~~~~~-G~~~y~G~~~~g~~~G~G~~ 70 (293)
T 1h3i_A 1 FFFDGSTLEG---------YYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTD-GRLIFKGQYKDNIRHGVCWI 70 (293)
T ss_dssp CCSSSCCCCE---------EEETTEEEEEEEEECTTSCEEEEEEETTEEEEEEEEECSS-SCEEEEEEEETTEECSEEEE
T ss_pred CcCCCCEEEE---------EEECCEeeEEEEEEECCCCEEEEEEECCEEEeCEEEEECC-CCEEEEEEEECCEEEeeEEE
Confidence 4789999999 6677779999999999999999999999999999999999 88 99999999999999999
Q ss_pred EecCCCeEEEEEEE-CCeeeee-EEEEEcCCCc-EEEEEEECCCCCChhhhhhhhcCCCCCccCCCCCCCCceeeCCeEE
Q psy7846 120 EYPMSGVSFHGFFE-NNRPLGK-GVFVFPRLNC-MQLGIYSSPPPDLEAEEIQAETSGEGDEEKPRKEGPPSQWFAKDVV 196 (281)
Q Consensus 120 ~~~dng~~Y~G~w~-n~~~~G~-G~~~~~~dG~-~y~G~w~~g~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~w~~g~~~ 196 (281)
+++ +|.+|+|+|+ ++++||. |+++++ +|. +|+|+|++++++
T Consensus 71 ~~~-~G~~y~G~~~~~g~~~G~gG~~~~~-~G~~~y~G~~~~g~~~---------------------------------- 114 (293)
T 1h3i_A 71 YYP-DGGSLVGEVNEDGEMTGEKIAYVYP-DERTALYGKFIDGEMI---------------------------------- 114 (293)
T ss_dssp ECT-TSCEEEEECCTTSCSCEEEEEEECT-TSSEEEEEEEETTEEE----------------------------------
T ss_pred EEC-CCCEEEEEEeECCeEeCCeEEEEEC-CCCEEEEEEEECCEEE----------------------------------
Confidence 999 4999999999 9999999 999999 999 599999998866
Q ss_pred EeeeeeCCCCCCCccCCCCCCccccceEEEE--ccCCCeEEeeEcCCeEeeccc
Q psy7846 197 EYDESLMPPLPKTRILPDSPDIESVQSAILL--SENSEQEEGAWSEGREELGEE 248 (281)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~k~~G~G~~~--~~~G~~~~G~W~~G~~~~~~~ 248 (281)
.|.++++ .++|..+.|+|.++++++|..
T Consensus 115 ------------------------~G~~~~~~~~~~g~~~~g~w~~g~~~~~~~ 144 (293)
T 1h3i_A 115 ------------------------EGKLATLMSTEEGRPHFELMPGNSVYHFDK 144 (293)
T ss_dssp ------------------------EEEEEEEEECTTTSCEEEECSSCCEECCCC
T ss_pred ------------------------ccceEEEEecCCcceEEeEEcCCceEEeec
Confidence 1344444 678888899999999988865
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.98 E-value=3.5e-10 Score=102.31 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=42.0
Q ss_pred EEeecCCeeeeeEEEEecCCCEEEEEEecCeEeeeee-CCeeeee-EEEEEecCCE-EEEEEeCCeEe
Q psy7846 26 GGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWK-KNTQHGC-GIYYYINGDT-YSGAWFKGKRH 90 (281)
Q Consensus 26 G~~~~~g~~~G~G~~~~~dG~~YeG~~~~gk~~G~w~-~g~~~G~-G~~~~~nG~~-Y~G~w~~g~~~ 90 (281)
|+| +++++||.|+++||||++|+| +|. ++.+||. |+|+|+||++ |+|+|+++.+.
T Consensus 3 g~~-~~~~~~G~g~~~~~dG~~y~G---------~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 3 MGY-KDNIRHGVCWIYYPDGGSLVG---------EVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp ---------CCCEEEECTTSCEEEE---------CCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred cee-cCCceecceEEEeCCCCEEEE---------EEeeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 788 899999999999999999999 777 7888999 9999999998 99999998874
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.94 E-value=3.9e-10 Score=102.03 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=38.0
Q ss_pred eeeCCeeeeeEEEEEecCCEEEEEEe-CCeEeee-EEEEEcCCCcE-EEEEEEccce
Q psy7846 60 EWKKNTQHGCGIYYYINGDTYSGAWF-KGKRHGI-GTYTYATLGVK-LTCAWDADEI 113 (281)
Q Consensus 60 ~w~~g~~~G~G~~~~~nG~~Y~G~w~-~g~~~G~-G~~~~~n~g~~-Y~G~f~~g~~ 113 (281)
+|+++++||.|+++|+||++|+|+|. ++.+||. |+|+|+| +.+ |+|+|+++.+
T Consensus 4 ~~~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d-~~~~~~G~~~~g~~ 59 (261)
T 2f69_A 4 GYKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPD-ERTALYGKFIDGEM 59 (261)
T ss_dssp -------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTT-SSEEEEEEEETTEE
T ss_pred eecCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCC-CCEEEEEEEeCCcE
Confidence 67778888888888888888888888 8888888 8888888 666 8888888765
No 5
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=8.13 E-value=1.4e+02 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=15.3
Q ss_pred eeeccceEEecceEEEecCCCc
Q psy7846 251 LVSSAGELHIGDQIEVMSSPSM 272 (281)
Q Consensus 251 ~~~~~g~~~~~~~~~~~~~~~~ 272 (281)
++.-.-.|..||+|||+.++..
T Consensus 50 ~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 50 IVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp EECTTCBCCTTCBEEEEECC--
T ss_pred EcCCCcccCCCCEEEEEccCcc
Confidence 3334567889999999988765
No 6
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=7.76 E-value=1.6e+02 Score=20.94 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=14.6
Q ss_pred eeccceEEecceEEEecCC
Q psy7846 252 VSSAGELHIGDQIEVMSSP 270 (281)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~ 270 (281)
+.....+..||.||||++.
T Consensus 24 ie~rN~f~~GD~iEi~~P~ 42 (89)
T 4he6_A 24 VQQRNHFRPGDEVEFFGPE 42 (89)
T ss_dssp EEESSCBCTTCEEEEESTT
T ss_pred EEEcCCcCCCCEEEEEcCC
Confidence 4567788889999988653
No 7
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=7.46 E-value=1.2e+02 Score=22.40 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=14.5
Q ss_pred ccceEEecceEEEecCCC
Q psy7846 254 SAGELHIGDQIEVMSSPS 271 (281)
Q Consensus 254 ~~g~~~~~~~~~~~~~~~ 271 (281)
.+-.|..||+|||.++..
T Consensus 70 ~d~~L~dGDRVEIyrpl~ 87 (97)
T 2hj1_A 70 LTDVLKEGDRIEIYRPLL 87 (97)
T ss_dssp TTCBCCTTCEEEECCCCC
T ss_pred CCccCCCCCEEEEEeccc
Confidence 566689999999987754
No 8
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=7.13 E-value=6e+02 Score=19.55 Aligned_cols=37 Identities=8% Similarity=0.309 Sum_probs=23.0
Q ss_pred EEEEccCCCeEEeeEcCCeEeeccccceeeccceEEecc
Q psy7846 224 AILLSENSEQEEGAWSEGREELGEEEDLVSSAGELHIGD 262 (281)
Q Consensus 224 G~~~~~~G~~~~G~W~~G~~~~~~~~~~~~~~g~~~~~~ 262 (281)
+.++..|- ..-|.|.||+++.-. ...+...-++.+|.
T Consensus 77 ~~~~l~Dl-S~NGT~VNg~~i~~~-~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 77 NLINVIDK-SRNGTFINGNRLVKK-DYILKNGDRIVFGK 113 (151)
T ss_dssp EEEEEEEC-CSSCEEETTEECCSS-CEEECSSEEEEETT
T ss_pred CEEEEEEC-CCCCeEECCEEcCCC-ceECCCCCEEEECC
Confidence 34444455 667889999988644 33434455666776
No 9
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=7.12 E-value=1.8e+02 Score=23.90 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=16.2
Q ss_pred eeccceEEecceEEEecCCCc
Q psy7846 252 VSSAGELHIGDQIEVMSSPSM 272 (281)
Q Consensus 252 ~~~~g~~~~~~~~~~~~~~~~ 272 (281)
+...|.+..||.|++++++.+
T Consensus 167 Vl~~G~I~~GD~v~l~~~~~~ 187 (195)
T 1oru_A 167 VERPGAVYTGDEIEVHSYQRK 187 (195)
T ss_dssp EEECEEEETTCEEEEEEEC--
T ss_pred EecCceEcCCCEEEEEeCCCC
Confidence 456899999999999877654
No 10
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=6.30 E-value=1.7e+02 Score=21.24 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.1
Q ss_pred ccceeeccceEEecceEEEe
Q psy7846 248 EEDLVSSAGELHIGDQIEVM 267 (281)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~ 267 (281)
+.+.+.+..++..+|+|++|
T Consensus 61 dp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 61 DPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp CTTSBGGGSSCCTTCEEEEE
T ss_pred CccCChhhhCCcCCceeeee
Confidence 34566888999999999986
Done!