RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7846
(281 letters)
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 66.4 bits (162), Expect = 3e-12
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 24 YEGGRNARQQRHGTGRALHANGDYYEGCYS-------------KNLRY-GEWKKNTQHGC 69
YEG R RHG G+ +G YEG +S Y G W+ N +HG
Sbjct: 34 YEGEWR-RGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYKGRWRLNLKHGL 92
Query: 70 GIYYYINGDTYSGAWFKGKRHGIGTYTYATLGVKLTCAWDADEITGGGRLEYPMSGVSFH 129
G Y NGD + G+W +G + G G YT+A V L +++G G L + +SG S+
Sbjct: 93 GYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLG-DMKGGKMSGKGTLTW-VSGDSYE 150
Query: 130 GFFENNRPLGKGVFVF 145
G + + G GV+ +
Sbjct: 151 GQWLDGMMHGFGVYTW 166
Score = 61.0 bits (148), Expect = 2e-10
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 27 GRNARQQRHGTGRALHANGDYYEGCY--------------SKNLRYGEWKKNTQHGCGIY 72
GR +HG G + NGD +EG + + N+ G+ K G G
Sbjct: 82 GRWRLNLKHGLGYQRYPNGDVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGKMSGKGTL 141
Query: 73 YYINGDTYSGAWFKGKRHGIGTYTYATLGV 102
+++GD+Y G W G HG G YT++ G
Sbjct: 142 TWVSGDSYEGQWLDGMMHGFGVYTWSDGGC 171
Score = 44.4 bits (105), Expect = 4e-05
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 36 GTGRALHANGDYYEGCYSKNLRYGE----WKKNTQ----------HGCGIYYYINGDTYS 81
G G+ L ++G YEG + + +R+G W HG G Y +G TY
Sbjct: 22 GPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGATYEGEFSGGYMHGSGTYTGTDGTTYK 81
Query: 82 GAWFKGKRHGIGTYTYATLGVKLTCAWDADEITGGGRLEYPMSGVSFHGFFENNRPLGKG 141
G W +HG+G Y G +W G G+ + +G + G + + GKG
Sbjct: 82 GRWRLNLKHGLGYQRYPN-GDVFEGSWIQGLQEGPGKYTWA-NGNVYLGDMKGGKMSGKG 139
Query: 142 VF 143
Sbjct: 140 TL 141
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 44 NGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYSGAWFKGKRHGIG 93
NGD+Y G N G G Y + +G Y G W +G RHG G
Sbjct: 7 NGDFY---------SGSLLGNVPEGPGKYLWSDGCMYEGEWRRGMRHGNG 47
Score = 31.7 bits (72), Expect = 0.52
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 76 NGDTYSGAWFKGKRHGIGTYTYATLGVKLTCAWDADEITGGGRLEYPMSGVSFHGFFENN 135
NGD YSG+ G G Y ++ G W G G++ +P SG ++ G F
Sbjct: 7 NGDFYSGSLLGNVPEGPGKYLWSD-GCMYEGEWRRGMRHGNGKISWP-SGATYEGEFSGG 64
Query: 136 RPLGKGVFV 144
G G +
Sbjct: 65 YMHGSGTYT 73
>gnl|CDD|197832 smart00698, MORN, Possible plasma membrane-binding motif in
junctophilins, PIP-5-kinases and protein kinases.
Length = 22
Score = 39.6 bits (94), Expect = 3e-05
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 78 DTYSGAWFKGKRHGIGTYTYA 98
D Y G W GKRHG G YTYA
Sbjct: 1 DRYEGEWRNGKRHGRGVYTYA 21
Score = 30.4 bits (70), Expect = 0.060
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 57 RY-GEWKKNTQHGCGIYYYIN 76
RY GEW+ +HG G+Y Y N
Sbjct: 2 RYEGEWRNGKRHGRGVYTYAN 22
>gnl|CDD|202256 pfam02493, MORN, MORN repeat. The MORN (Membrane Occupation and
Recognition Nexus) repeat is found in multiple copies
in several proteins including junctophilins (See
Takeshima et al. Mol. Cell 2000;6:11-22). A MORN-repeat
protein has been identified in the parasite Toxoplasma
gondiis a dynamic component of cell division apparatus
in Toxoplasma gondii. It has been hypothesised to
functions as a linker protein between certain membrane
regions and the parasite's cytoskeleton.
Length = 23
Score = 33.1 bits (77), Expect = 0.007
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 80 YSGAWFKGKRHGIGTYTYAT 99
Y G W GKRHG G YT+
Sbjct: 1 YEGEWKNGKRHGKGVYTWPD 20
Score = 30.8 bits (71), Expect = 0.049
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 59 GEWKKNTQHGCGIYYYINGDT 79
GEWK +HG G+Y + +GD
Sbjct: 3 GEWKNGKRHGKGVYTWPDGDR 23
>gnl|CDD|226989 COG4642, COG4642, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 139
Score = 31.6 bits (72), Expect = 0.20
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 20 PLGQYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDT 79
GG + + G G + NG Y G L+ G+ +G G Y + NGD
Sbjct: 29 LGCARVGGSLKQGKLAGKGSLKYDNGRIYTG----TLKNGKM-----NGQGTYTFANGDI 79
Query: 80 YSGAWFKGKRHGIGTYTYAT 99
Y G + GK G GT
Sbjct: 80 YEGPFNSGKFRGQGTRGSFN 99
Score = 30.5 bits (69), Expect = 0.46
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 77 GDTYSGAWFKGKRHGIGTYTYATLGVKLTCAWDADEITGGGRLEYPMSGVSFHGFFENNR 136
G Y G + +GK G+ TY ++ + ++ G G L+Y +G + G +N +
Sbjct: 8 GLRYEGFFVRGKLEGLSTYDI-LGCARVGGSLKQGKLAGKGSLKYD-NGRIYTGTLKNGK 65
Query: 137 PLGKGVFVFP 146
G+G + F
Sbjct: 66 MNGQGTYTFA 75
Score = 28.6 bits (64), Expect = 1.8
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 23 QYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYSG 82
Y G + +G G ANGD YEG + G G NG Y G
Sbjct: 56 IYTGTL-KNGKMNGQGTYTFANGDIYEG---------PFNSGKFRGQGTRGSFNGWLYIG 105
Query: 83 AWFKGKRHGIGTYTYA 98
+ +G+ +G G
Sbjct: 106 RFTEGQANGKGFLLKE 121
>gnl|CDD|148234 pfam06503, DUF1101, Protein of unknown function (DUF1101). This
family consists of several hypothetical Fijivirus
proteins of unknown function.
Length = 360
Score = 32.1 bits (73), Expect = 0.30
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 46 DYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYSGAWFKGKRHGIGTYT 96
D ++ S NL YG + YY I YS F +R I TYT
Sbjct: 221 DLFKALSSPNLVYGGNYQLVYQVLFYYYIITNGRYSTG-FTNRRDSIKTYT 270
>gnl|CDD|222493 pfam14010, PEPcase_2, Phosphoenolpyruvate carboxylase. This family
of phosphoenolpyruvate carboxylases is based on
seqeunces not picked up by the model for PEPcase,
PF00311. Most of the family members are from Archaea.
Length = 476
Score = 29.1 bits (66), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 128 FHGFFENNRPLGKGVFVFPRLNCMQLGIYSSPPPDLEAEE--IQAETS 173
+ FF++ LGK +F+ PR+ P P +E E + AET
Sbjct: 65 YPEFFKDK-ILGKDIFLTPRV----------PNPKVEKAERKLLAETL 101
>gnl|CDD|237459 PRK13655, PRK13655, phosphoenolpyruvate carboxylase; Provisional.
Length = 494
Score = 28.8 bits (65), Expect = 3.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 126 VSFHGFFENNRPLGKGVFVFPRLNCMQLGIYSSPPPDLEAEE--IQAETS 173
+ FF+ + LGK VF+ PR+ P P +E E + AET
Sbjct: 66 SKYPDFFKGH-ILGKDVFLTPRV----------PNPKVEKAERKLLAETL 104
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 28.8 bits (64), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 93 GTYTYATLGVKLTCAWDADEITGGGRLEYPMSGVSF 128
G+Y Y + V T D + G+L Y ++GVSF
Sbjct: 342 GSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSF 377
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI. As catalase, this
enzyme catalyzes the dismutation of two molecules of
hydrogen peroxide to dioxygen and two molecules of
water. As a peroxidase, it uses hydrogen peroxide to
oxidize donor compounds and produce water. KatG from E.
coli is a homotetramer with two non-covalently
associated iron protoheme IX groups per tetramer, but
the ortholog from Synechococcus sp. is a homodimer with
one protoheme. Important sites (numbered according to E.
coli KatG) include heme ligands His-106 and His-267 and
active site Trp-318. Note that the translation
PID:g296476 from accession X71420 from Rhodobacter
capsulatus B10 contains extensive frameshift differences
from the rest of the orthologous family [Cellular
processes, Detoxification].
Length = 716
Score = 28.4 bits (63), Expect = 5.7
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 182 RKEGPPSQWFAKDVVEYDESLMPPLPKTRILPDSPDIESVQSAILLS--ENSEQEEGAWS 239
R GP S++ DV + D PLP DI+ ++ IL S SE AW+
Sbjct: 398 RDMGPKSRYIGPDVPQEDLIWQDPLPPVDYTLSEGDIKELKQQILASGLSVSELVCTAWA 457
Query: 240 EGR 242
Sbjct: 458 SAS 460
>gnl|CDD|219803 pfam08345, YscJ_FliF_C, Flagellar M-ring protein C-terminal. This
domain is found in bacterial flagellar M-ring (FliF)
proteins together with the YscJ/FliF domain (pfam01514).
Length = 160
Score = 26.8 bits (60), Expect = 8.1
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 228 SENSEQEEGAWSEGREELGEEEDLVSSAGELHIG------DQIEVMSSP 270
+ E E SE EEL + E LV SA +G DQ+ V+S P
Sbjct: 117 DGDGEAEYVPRSE--EELAQIEALVKSA----VGFDAARGDQVTVVSMP 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.134 0.409
Gapped
Lambda K H
0.267 0.0933 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,000,662
Number of extensions: 1442025
Number of successful extensions: 843
Number of sequences better than 10.0: 1
Number of HSP's gapped: 833
Number of HSP's successfully gapped: 29
Length of query: 281
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 185
Effective length of database: 6,679,618
Effective search space: 1235729330
Effective search space used: 1235729330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (25.8 bits)