RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7846
(281 letters)
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens}
SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Length = 293
Score = 75.2 bits (185), Expect = 5e-16
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 25/150 (16%)
Query: 22 GQYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLR--------------Y-GEWKKNTQ 66
G Y G G + +G +G Y + G++K N +
Sbjct: 10 GYYVDD-----ALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIR 64
Query: 67 HGCGIYYYINGDTYSGAWFK-GKRHGIGT-YTYATLGVKLTCAWDADEITGGGRLEYPMS 124
HG YY +G + G + G+ G Y Y L + E+ G +
Sbjct: 65 HGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMST 124
Query: 125 GVSFHGFFENNRPLGKGVFVFPRLNCMQLG 154
G G V+ F + +
Sbjct: 125 E---EGRPHFELMPGNSVYHFDKSTSSCIS 151
Score = 68.6 bits (168), Expect = 1e-13
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 33/106 (31%)
Query: 41 LHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYSGAWFKGKRHGIGTYTYATL 100
+G EG + + G G+Y Y +G G + G+ +G
Sbjct: 1 FFFDGSTLEG---------YYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTD- 50
Query: 101 GVKLTCAWDADEITGGGRLEYPMSGVSFHGFFENNRPLGKGVFVFP 146
GRL + G +++N G +P
Sbjct: 51 ----------------GRLIF-------KGQYKDNIRHGVCWIYYP 73
Score = 37.8 bits (88), Expect = 0.003
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 22 GQYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWKKNTQHGCGIYYYINGDTYS 81
G+ G+ A GR ++E ++ + + ++ ++
Sbjct: 111 GEMIEGKLATLMSTEEGRP------HFELMPGNSVYHFDKSTSSCISTNALLPDPYESER 164
Query: 82 GAWFKGKRHGIGTYTYAT 99
+ G ++
Sbjct: 165 VYVAESLISSAGEGLFSK 182
Score = 35.1 bits (81), Expect = 0.018
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 9/71 (12%)
Query: 22 GQYEGGRNARQQRHGTGRALHANGDYYEGCYSKNLRYGEWKKNTQHGCGIY-YYINGDTY 80
Y + T L + Y + G G++ G
Sbjct: 138 SVYHFD-KSTSSCISTNALLPDPYESERV-------YVAESLISSAGEGLFSKVAVGPNT 189
Query: 81 SGAWFKGKRHG 91
+++ G R
Sbjct: 190 VMSFYNGVRIT 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 41/199 (20%), Positives = 64/199 (32%), Gaps = 66/199 (33%)
Query: 91 GIGTYTYATLGV-KLTCAWD-ADEITGGGRLEYPMSGVSFHGFFENNRPLGKGVFVFP-- 146
G+G Y T + W+ AD + Y G S NN P+ + F
Sbjct: 1630 GMGMDLYKTSKAAQ--DVWNRADNHF---KDTY---GFSILDIVINN-PVNLTIH-FGGE 1679
Query: 147 -----RLNCMQLGIYSSPP-PDLEAEEIQAETSGEGDEEKPRKEGPPSQWFAKDVVEYDE 200
R N + I+ + L+ E+I E + E S F ++
Sbjct: 1680 KGKRIRENYSAM-IFETIVDGKLKTEKIFKEIN----------EHSTSYTF-----RSEK 1723
Query: 201 SLMPPLPKTRILPDSPDIESVQSAILLSENSEQEEGAWSEGREE-------------LGE 247
L L T + Q A+ L E + A+ + + + LGE
Sbjct: 1724 GL---LSAT---------QFTQPALTLMEKA-----AFEDLKSKGLIPADATFAGHSLGE 1766
Query: 248 EEDLVSSAGELHIGDQIEV 266
L S A + I +EV
Sbjct: 1767 YAALASLADVMSIESLVEV 1785
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 34.3 bits (78), Expect = 0.030
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 61 WKKNTQHGCGIYYYINGDTYSGAW-FKGKRHGIGT-YTYATLGVKLTCAWDADEITGG 116
+K N +HG YY +G + G G+ G Y Y L + E+ G
Sbjct: 5 YKDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMIEG 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.11
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 49/128 (38%)
Query: 164 EAEEIQAETSGEGDEEKPR---KEGP-------------PSQW-FAKDVVEYD------- 199
E + + + ++ PR P + W K V D
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIE 360
Query: 200 ---ESLMPPLPKTR-----ILPDSPDIESVQSAILLSENSEQEEGAWSEGREELGEEEDL 251
L P + + P S I ++ +++ W + + + +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-----------WFDVIKS--DVMVV 407
Query: 252 VSSAGELH 259
V+ +LH
Sbjct: 408 VN---KLH 412
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 27.4 bits (60), Expect = 6.8
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 10/45 (22%)
Query: 128 FHGFFENNRPLGKGVFVFPRLNCMQLGIYSSPPPDLEAEEIQAET 172
G N GK V V PR+ P + E+ Q +
Sbjct: 86 ALGLISNGIIPGKDVRVTPRI----------PNANKESVFRQLMS 120
>1u5x_A Tumor necrosis factor ligand superfamily member 1; TNFSF,
cytokine, jelly-roll, trimer, hormone-growth factor C;
1.80A {Mus musculus} SCOP: b.22.1.1 PDB: 1u5y_A 1u5z_A
3k48_A 1xu1_A 1xu2_A
Length = 140
Score = 26.4 bits (58), Expect = 6.9
Identities = 10/71 (14%), Positives = 17/71 (23%), Gaps = 17/71 (23%)
Query: 40 ALHANGDYYEGCYSKNLRYGEWKKNTQHGCGI-------------YYYINGDTYSGAWFK 86
LH ++ W+ + G G+ Y + YS F
Sbjct: 7 VLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLL----YSQVLFH 62
Query: 87 GKRHGIGTYTY 97
+G
Sbjct: 63 DVTFTMGQVVS 73
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 26.8 bits (59), Expect = 7.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 61 WKKNTQHGCGIYYYINGDTYSGAWF 85
W K T+ GCG + D ++ +
Sbjct: 168 WAKTTKIGCGRIMFKEPDNWTKHYL 192
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 26.7 bits (59), Expect = 8.0
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 51 CYSKNLRYGEWKKNTQHGCGIYYYINGD 78
C K+ WKKN + + Y ++G+
Sbjct: 5 CEDKSCF---WKKNANNIVEVPYVVSGE 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.134 0.409
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,641,209
Number of extensions: 282235
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 19
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.2 bits)