BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7847
(170 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345483765|ref|XP_001603091.2| PREDICTED: hypothetical protein LOC100119300 [Nasonia vitripennis]
Length = 325
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 218 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 277
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 278 KAMKEMNGRY 287
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+
Sbjct: 219 EDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIK 278
Query: 145 ANKEMN 150
A KEMN
Sbjct: 279 AMKEMN 284
>gi|383860233|ref|XP_003705595.1| PREDICTED: uncharacterized protein LOC100882411 [Megachile
rotundata]
Length = 326
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 219 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 278
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 279 KAMKEMNGRY 288
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 221 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 280
Query: 146 NKEMN 150
KEMN
Sbjct: 281 MKEMN 285
>gi|307187756|gb|EFN72728.1| RNA-binding protein 42 [Camponotus floridanus]
Length = 325
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 218 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 277
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 278 KAMKEMNGRY 287
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 220 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 279
Query: 146 NKEMN 150
KEMN
Sbjct: 280 MKEMN 284
>gi|340718038|ref|XP_003397479.1| PREDICTED: hypothetical protein LOC100647660 [Bombus terrestris]
gi|350400127|ref|XP_003485747.1| PREDICTED: hypothetical protein LOC100743172 [Bombus impatiens]
Length = 326
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 219 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 278
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 279 KAMKEMNGRY 288
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 221 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 280
Query: 146 NKEMN 150
KEMN
Sbjct: 281 MKEMN 285
>gi|322791811|gb|EFZ16028.1| hypothetical protein SINV_08146 [Solenopsis invicta]
Length = 291
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 225 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 284
Query: 79 RANKEMN 85
+A KEMN
Sbjct: 285 KAMKEMN 291
Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 227 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 286
Query: 146 NKEMN 150
KEMN
Sbjct: 287 MKEMN 291
>gi|66501574|ref|XP_392161.2| PREDICTED: hypothetical protein LOC408620 isoform 1 [Apis
mellifera]
Length = 326
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 219 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 278
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 279 KAMKEMNGRY 288
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 221 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 280
Query: 146 NKEMN 150
KEMN
Sbjct: 281 MKEMN 285
>gi|307205597|gb|EFN83889.1| RNA-binding protein 42 [Harpegnathos saltator]
Length = 325
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 218 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 277
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 278 KAMKEMNGRY 287
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 220 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 279
Query: 146 NKEMN 150
KEMN
Sbjct: 280 MKEMN 284
>gi|332023971|gb|EGI64189.1| RNA-binding protein 42 [Acromyrmex echinatior]
Length = 307
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/68 (85%), Positives = 64/68 (94%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DE+DFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 218 DEDDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFI 277
Query: 79 RANKEMND 86
+A KEMN+
Sbjct: 278 KAMKEMNE 285
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/66 (87%), Positives = 62/66 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L+R F KYPSF KAKVVRDKRTNKTKGFGFVSFKDPQDFI+A
Sbjct: 220 DDFRIFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKA 279
Query: 146 NKEMNE 151
KEMNE
Sbjct: 280 MKEMNE 285
>gi|291235049|ref|XP_002737458.1| PREDICTED: Temporarily Assigned Gene name family member
(tag-262)-like [Saccoglossus kowalevskii]
Length = 323
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+FCGDLGN+VTDELL R F KYPSFLKAKVVRDKRTNKTKGFGFVSF+DP DF+
Sbjct: 220 DPNDFRIFCGDLGNEVTDELLTRVFGKYPSFLKAKVVRDKRTNKTKGFGFVSFRDPNDFV 279
Query: 79 RANKEMNDDF 88
A +EMN +
Sbjct: 280 AAMREMNGKY 289
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+VTDELL R F KYPSFLKAKVVRDKRTNKTKGFGFVSF+DP DF+ A
Sbjct: 222 NDFRIFCGDLGNEVTDELLTRVFGKYPSFLKAKVVRDKRTNKTKGFGFVSFRDPNDFVAA 281
Query: 146 NKEMN 150
+EMN
Sbjct: 282 MREMN 286
>gi|242006504|ref|XP_002424090.1| rrm-containing protein, putative [Pediculus humanus corporis]
gi|212507396|gb|EEB11352.1| rrm-containing protein, putative [Pediculus humanus corporis]
Length = 268
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDVTDE+L R F+KY SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI+
Sbjct: 162 DDDFRIFCGDLGNDVTDEVLTRAFNKYNSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIK 221
Query: 145 ANKEMN 150
A KEMN
Sbjct: 222 AMKEMN 227
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 64/70 (91%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++DFR+FCGDLGNDVTDE+L R F+KY SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI
Sbjct: 161 EDDDFRIFCGDLGNDVTDEVLTRAFNKYNSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 220
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 221 KAMKEMNGRY 230
>gi|193697426|ref|XP_001952469.1| PREDICTED: RNA-binding protein 42-like [Acyrthosiphon pisum]
Length = 317
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 6/80 (7%)
Query: 9 ISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+S W DE+DFRLFCGDLGNDVTDELL RTFS+YPSF KA+VVRD+RT KT+GFGF
Sbjct: 204 LSEW------DEDDFRLFCGDLGNDVTDELLARTFSRYPSFQKARVVRDRRTMKTRGFGF 257
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSFKDP DFI+A KE+N +
Sbjct: 258 VSFKDPADFIKATKELNGRY 277
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFRLFCGDLGNDVTDELL RTFS+YPSF KA+VVRD+RT KT+GFGFVSFKDP DFI+A
Sbjct: 210 DDFRLFCGDLGNDVTDELLARTFSRYPSFQKARVVRDRRTMKTRGFGFVSFKDPADFIKA 269
Query: 146 NKEMN 150
KE+N
Sbjct: 270 TKELN 274
>gi|443731497|gb|ELU16602.1| hypothetical protein CAPTEDRAFT_170084 [Capitella teleta]
Length = 368
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 63/70 (90%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D +DFR+FCGDLGN+VTDELL RTF +YPSF+KAKVVRDKRTNKT+G+GFVSF+DP DF+
Sbjct: 265 DPSDFRMFCGDLGNEVTDELLTRTFGRYPSFMKAKVVRDKRTNKTRGYGFVSFRDPNDFV 324
Query: 79 RANKEMNDDF 88
+A +EMN +
Sbjct: 325 KAMREMNGKY 334
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 60/64 (93%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
DFR+FCGDLGN+VTDELL RTF +YPSF+KAKVVRDKRTNKT+G+GFVSF+DP DF++A
Sbjct: 268 DFRMFCGDLGNEVTDELLTRTFGRYPSFMKAKVVRDKRTNKTRGYGFVSFRDPNDFVKAM 327
Query: 147 KEMN 150
+EMN
Sbjct: 328 REMN 331
>gi|158299263|ref|XP_554108.3| AGAP010200-PA [Anopheles gambiae str. PEST]
gi|157014281|gb|EAL39296.3| AGAP010200-PA [Anopheles gambiae str. PEST]
Length = 323
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 63/69 (91%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+DFR+FCGDLGNDV DELL RTF+KYPSF +AKV+RDKRT+K+KG+GFVSFKDPQDFIR
Sbjct: 217 EDDFRIFCGDLGNDVNDELLTRTFNKYPSFQRAKVIRDKRTSKSKGYGFVSFKDPQDFIR 276
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 277 AMKEMDGRY 285
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDV DELL RTF+KYPSF +AKV+RDKRT+K+KG+GFVSFKDPQDFIRA
Sbjct: 218 DDFRIFCGDLGNDVNDELLTRTFNKYPSFQRAKVIRDKRTSKSKGYGFVSFKDPQDFIRA 277
Query: 146 NKEMN 150
KEM+
Sbjct: 278 MKEMD 282
>gi|432100932|gb|ELK29282.1| RNA-binding protein 42 [Myotis davidii]
Length = 743
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 350 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 409
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 410 KTKGYGFVSFKDPSDYVRAMREMNGKY 436
Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 369 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 428
Query: 146 NKEMN 150
+EMN
Sbjct: 429 MREMN 433
>gi|339257254|ref|XP_003369997.1| RNA-binding protein 42 [Trichinella spiralis]
gi|316965459|gb|EFV50166.1| RNA-binding protein 42 [Trichinella spiralis]
Length = 275
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D +DFRLFCGDLGN+V+DELL + F KYPSFLKAKVVRDKR+NKTKG+GFVSFKDPQDFI
Sbjct: 171 DPDDFRLFCGDLGNEVSDELLSKAFRKYPSFLKAKVVRDKRSNKTKGYGFVSFKDPQDFI 230
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 231 RALREMDGKY 240
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 61/65 (93%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFRLFCGDLGN+V+DELL + F KYPSFLKAKVVRDKR+NKTKG+GFVSFKDPQDFIRA
Sbjct: 173 DDFRLFCGDLGNEVSDELLSKAFRKYPSFLKAKVVRDKRSNKTKGYGFVSFKDPQDFIRA 232
Query: 146 NKEMN 150
+EM+
Sbjct: 233 LREMD 237
>gi|348517383|ref|XP_003446213.1| PREDICTED: RNA-binding protein 42-like [Oreochromis niloticus]
Length = 405
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 303 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 362
Query: 145 ANKEMN 150
A +EMN
Sbjct: 363 AMREMN 368
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 302 ESDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 361
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 362 RAMREMNGKY 371
>gi|334328604|ref|XP_001363785.2| PREDICTED: RNA-binding protein 42-like [Monodelphis domestica]
Length = 549
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 429 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 488
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 489 KTKGYGFVSFKDPSDYVRAMREMNGKY 515
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 448 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 507
Query: 146 NKEMN 150
+EMN
Sbjct: 508 MREMN 512
>gi|157126845|ref|XP_001660974.1| poly(A)-binding protein, putative [Aedes aegypti]
gi|108873128|gb|EAT37353.1| AAEL010642-PA [Aedes aegypti]
Length = 326
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 62/66 (93%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DELL RTF+K+PSF +AKV+RDKRT+K+KG+GFVSFKDPQDFIR
Sbjct: 220 DDDFRIFCGDLGNDVNDELLTRTFNKFPSFQRAKVIRDKRTSKSKGYGFVSFKDPQDFIR 279
Query: 145 ANKEMN 150
A KEM+
Sbjct: 280 AMKEMD 285
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W ++ D ++DFR+FCGDLGNDV DELL RTF+K+PSF +AKV+RDKRT+K+KG+GF
Sbjct: 209 TWEDQSLGDWPDDDFRIFCGDLGNDVNDELLTRTFNKFPSFQRAKVIRDKRTSKSKGYGF 268
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSFKDPQDFIRA KEM+ +
Sbjct: 269 VSFKDPQDFIRAMKEMDGRY 288
>gi|260841238|ref|XP_002613835.1| hypothetical protein BRAFLDRAFT_119898 [Branchiostoma floridae]
gi|229299225|gb|EEN69844.1| hypothetical protein BRAFLDRAFT_119898 [Branchiostoma floridae]
Length = 415
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R F+KYPSFLKAKV+RDKRTNKTKG+GFVSFKDP DF++
Sbjct: 312 TDDFRIFCGDLGNEVNDDVLARAFNKYPSFLKAKVIRDKRTNKTKGYGFVSFKDPNDFVK 371
Query: 145 ANKEMN 150
A +EMN
Sbjct: 372 AMREMN 377
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 62/70 (88%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R F+KYPSFLKAKV+RDKRTNKTKG+GFVSFKDP DF+
Sbjct: 311 ETDDFRIFCGDLGNEVNDDVLARAFNKYPSFLKAKVIRDKRTNKTKGYGFVSFKDPNDFV 370
Query: 79 RANKEMNDDF 88
+A +EMN +
Sbjct: 371 KAMREMNGKY 380
>gi|160017962|sp|Q6DRG1.2|RBM42_DANRE RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|63101757|gb|AAH95046.1| Rbm42 protein [Danio rerio]
Length = 402
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 300 TDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 359
Query: 145 ANKEMN 150
A +EMN
Sbjct: 360 AMREMN 365
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 358
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 359 RAMREMNGRY 368
>gi|432907844|ref|XP_004077684.1| PREDICTED: RNA-binding protein 42-like [Oryzias latipes]
Length = 403
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 301 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 360
Query: 145 ANKEMN 150
A +EMN
Sbjct: 361 AMREMN 366
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 300 ESDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 359
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 360 RAMREMNGKY 369
>gi|51467936|ref|NP_001003850.1| RNA-binding protein 42 [Danio rerio]
gi|49619063|gb|AAT68116.1| MGC10433-like [Danio rerio]
Length = 402
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 300 TDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 359
Query: 145 ANKEMN 150
A +EMN
Sbjct: 360 AMREMN 365
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 358
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 359 RAMREMNGRY 368
>gi|410904607|ref|XP_003965783.1| PREDICTED: RNA-binding protein 42-like [Takifugu rubripes]
Length = 397
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 295 TDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 354
Query: 145 ANKEMN 150
A +EMN
Sbjct: 355 AMREMN 360
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 294 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 353
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 354 RAMREMNGKY 363
>gi|431918580|gb|ELK17798.1| RNA-binding protein 42 [Pteropus alecto]
Length = 470
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 356 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 415
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 416 FVSFKDPSDYVRAMREMNGKY 436
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 369 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 428
Query: 146 NKEMN 150
+EMN
Sbjct: 429 MREMN 433
>gi|73947895|ref|XP_853696.1| PREDICTED: RNA-binding protein 42 isoform 1 [Canis lupus
familiaris]
Length = 475
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 361 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 420
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 421 FVSFKDPSDYVRAMREMNGKY 441
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 374 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 433
Query: 146 NKEMN 150
+EMN
Sbjct: 434 MREMN 438
>gi|410983301|ref|XP_003997979.1| PREDICTED: RNA-binding protein 42 isoform 1 [Felis catus]
Length = 477
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|417401631|gb|JAA47692.1| Putative rna-binding protein 42 [Desmodus rotundus]
Length = 478
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 364 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 423
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 424 FVSFKDPSDYVRAMREMNGKY 444
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 377 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 436
Query: 146 NKEMN 150
+EMN
Sbjct: 437 MREMN 441
>gi|351711070|gb|EHB13989.1| RNA-binding protein 42 [Heterocephalus glaber]
Length = 473
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 359 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 418
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 419 FVSFKDPSDYVRAMREMNGKY 439
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 372 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 431
Query: 146 NKEMN 150
+EMN
Sbjct: 432 MREMN 436
>gi|149721860|ref|XP_001492287.1| PREDICTED: RNA-binding protein 42-like isoform 1 [Equus caballus]
Length = 474
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 360 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 419
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 420 FVSFKDPSDYVRAMREMNGKY 440
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMN 150
+EMN
Sbjct: 433 MREMN 437
>gi|327286022|ref|XP_003227730.1| PREDICTED: RNA-binding protein 42-like [Anolis carolinensis]
Length = 378
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D +DFR+FCGDLGN+V D++L R FS+YPSFLKAKV+RDKRT KTKG+GFVSFKDP D++
Sbjct: 275 DPDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVIRDKRTGKTKGYGFVSFKDPNDYV 334
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 335 RAMREMNGKY 344
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 277 DDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 336
Query: 146 NKEMN 150
+EMN
Sbjct: 337 MREMN 341
>gi|47218783|emb|CAG02769.1| unnamed protein product [Tetraodon nigroviridis]
Length = 440
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 314 TDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 373
Query: 145 ANKEMN 150
A +EMN
Sbjct: 374 AMREMN 379
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 313 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 372
Query: 79 RANKEMN 85
RA +EMN
Sbjct: 373 RAMREMN 379
>gi|397490323|ref|XP_003816154.1| PREDICTED: RNA-binding protein 42 isoform 1 [Pan paniscus]
Length = 477
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|355715804|gb|AES05407.1| RNA binding motif protein 42 [Mustela putorius furo]
Length = 485
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 372 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 431
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 432 FVSFKDPSDYVRAMREMNGKY 452
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 385 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 444
Query: 146 NKEMN 150
+EMN
Sbjct: 445 MREMN 449
>gi|348561796|ref|XP_003466697.1| PREDICTED: RNA-binding protein 42-like [Cavia porcellus]
Length = 477
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|391325860|ref|XP_003737445.1| PREDICTED: uncharacterized protein LOC100903632 isoform 1
[Metaseiulus occidentalis]
gi|391325862|ref|XP_003737446.1| PREDICTED: uncharacterized protein LOC100903632 isoform 2
[Metaseiulus occidentalis]
Length = 287
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 62/70 (88%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D +DFR+FCGDLGNDVTDE+L R FSKYP+F KAKV+RDKRTNK+KG+GFVSFK+PQ FI
Sbjct: 184 DPDDFRIFCGDLGNDVTDEMLTRVFSKYPTFTKAKVIRDKRTNKSKGYGFVSFKEPQGFI 243
Query: 79 RANKEMNDDF 88
+A +E+N +
Sbjct: 244 KAMRELNGKY 253
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGNDVTDE+L R FSKYP+F KAKV+RDKRTNK+KG+GFVSFK+PQ FI+A
Sbjct: 186 DDFRIFCGDLGNDVTDEMLTRVFSKYPTFTKAKVIRDKRTNKSKGYGFVSFKEPQGFIKA 245
Query: 146 NKEMN 150
+E+N
Sbjct: 246 MRELN 250
>gi|410983303|ref|XP_003997980.1| PREDICTED: RNA-binding protein 42 isoform 2 [Felis catus]
Length = 448
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|344247602|gb|EGW03706.1| HAUS augmin-like complex subunit 5 [Cricetulus griseus]
Length = 711
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + D +DFR+FCGDLGN+V D++L R S++PSFLKAKV+RDKRT
Sbjct: 591 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAVSRFPSFLKAKVIRDKRTG 650
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 651 KTKGYGFVSFKDPSDYVRAMREMNGKY 677
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 47/65 (72%), Positives = 58/65 (89%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R S++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 610 DDFRIFCGDLGNEVNDDILARAVSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 669
Query: 146 NKEMN 150
+EMN
Sbjct: 670 MREMN 674
>gi|148222938|ref|NP_001091367.1| RNA-binding protein 42 [Xenopus laevis]
gi|160016109|sp|A2VDB3.1|RBM42_XENLA RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|125858640|gb|AAI29698.1| LOC100037209 protein [Xenopus laevis]
Length = 392
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 291 DDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 146 NKEMN 150
+EMN
Sbjct: 351 TREMN 355
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++
Sbjct: 289 EPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYV 348
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 349 RATREMNGKY 358
>gi|395846928|ref|XP_003796140.1| PREDICTED: RNA-binding protein 42 isoform 1 [Otolemur garnettii]
Length = 477
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|417401136|gb|JAA47464.1| Putative rna-binding protein 42 [Desmodus rotundus]
Length = 449
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 335 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 394
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 395 FVSFKDPSDYVRAMREMNGKY 415
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 348 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 407
Query: 146 NKEMN 150
+EMN
Sbjct: 408 MREMN 412
>gi|440894914|gb|ELR47232.1| RNA-binding protein 42, partial [Bos grunniens mutus]
Length = 481
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 367 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 426
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 427 FVSFKDPSDYVRAMREMNGKY 447
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 380 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 439
Query: 146 NKEMN 150
+EMN
Sbjct: 440 MREMN 444
>gi|21359951|ref|NP_077297.2| RNA-binding protein 42 [Homo sapiens]
gi|114676746|ref|XP_001160564.1| PREDICTED: RNA-binding protein 42 isoform 5 [Pan troglodytes]
gi|74761247|sp|Q9BTD8.1|RBM42_HUMAN RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|13278888|gb|AAH04204.1| RNA binding motif protein 42 [Homo sapiens]
gi|168275604|dbj|BAG10522.1| RNA binding motif protein 42 [synthetic construct]
gi|410216696|gb|JAA05567.1| RNA binding motif protein 42 [Pan troglodytes]
gi|410216698|gb|JAA05568.1| RNA binding motif protein 42 [Pan troglodytes]
gi|410250542|gb|JAA13238.1| RNA binding motif protein 42 [Pan troglodytes]
gi|410294884|gb|JAA26042.1| RNA binding motif protein 42 [Pan troglodytes]
gi|410343577|gb|JAA40602.1| RNA binding motif protein 42 [Pan troglodytes]
Length = 480
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 366 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 425
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 426 FVSFKDPSDYVRAMREMNGKY 446
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 146 NKEMN 150
+EMN
Sbjct: 439 MREMN 443
>gi|397490325|ref|XP_003816155.1| PREDICTED: RNA-binding protein 42 isoform 2 [Pan paniscus]
Length = 448
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|383421541|gb|AFH33984.1| RNA-binding protein 42 [Macaca mulatta]
Length = 483
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 369 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 428
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 429 FVSFKDPSDYVRAMREMNGKY 449
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 382 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 441
Query: 146 NKEMN 150
+EMN
Sbjct: 442 MREMN 446
>gi|302563737|ref|NP_001180978.1| RNA-binding protein 42 [Macaca mulatta]
gi|402905187|ref|XP_003915404.1| PREDICTED: RNA-binding protein 42 isoform 1 [Papio anubis]
gi|355703440|gb|EHH29931.1| RNA-binding motif protein 42 [Macaca mulatta]
gi|383412587|gb|AFH29507.1| RNA-binding protein 42 [Macaca mulatta]
gi|387540360|gb|AFJ70807.1| RNA-binding protein 42 [Macaca mulatta]
Length = 480
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 366 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 425
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 426 FVSFKDPSDYVRAMREMNGKY 446
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 146 NKEMN 150
+EMN
Sbjct: 439 MREMN 443
>gi|73947903|ref|XP_867831.1| PREDICTED: RNA-binding protein 42 isoform 5 [Canis lupus
familiaris]
Length = 446
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 332 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 391
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 392 FVSFKDPSDYVRAMREMNGKY 412
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 345 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 404
Query: 146 NKEMN 150
+EMN
Sbjct: 405 MREMN 409
>gi|410250540|gb|JAA13237.1| RNA binding motif protein 42 [Pan troglodytes]
gi|410294882|gb|JAA26041.1| RNA binding motif protein 42 [Pan troglodytes]
Length = 480
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 366 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 425
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 426 FVSFKDPSDYVRAMREMNGKY 446
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 146 NKEMN 150
+EMN
Sbjct: 439 MREMN 443
>gi|224922828|ref|NP_598454.2| RNA-binding protein 42 [Mus musculus]
Length = 478
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 364 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 423
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 424 FVSFKDPSDYVRAMREMNGKY 444
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 377 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 436
Query: 146 NKEMN 150
+EMN
Sbjct: 437 MREMN 441
>gi|311257424|ref|XP_003127114.1| PREDICTED: RNA-binding protein 42-like isoform 2 [Sus scrofa]
Length = 477
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|224922818|ref|NP_001014181.2| RNA-binding protein 42 [Rattus norvegicus]
gi|149056297|gb|EDM07728.1| similar to RIKEN cDNA 3100004P22 [Rattus norvegicus]
Length = 478
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 364 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 423
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 424 FVSFKDPSDYVRAMREMNGKY 444
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 377 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 436
Query: 146 NKEMN 150
+EMN
Sbjct: 437 MREMN 441
>gi|444509614|gb|ELV09370.1| RNA-binding protein 42 [Tupaia chinensis]
Length = 454
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 340 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 399
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 400 FVSFKDPSDYVRAMREMNGKY 420
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 353 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 412
Query: 146 NKEMN 150
+EMN
Sbjct: 413 MREMN 417
>gi|380798823|gb|AFE71287.1| RNA-binding protein 42, partial [Macaca mulatta]
Length = 478
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 364 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 423
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 424 FVSFKDPSDYVRAMREMNGKY 444
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 377 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 436
Query: 146 NKEMN 150
+EMN
Sbjct: 437 MREMN 441
>gi|296477849|tpg|DAA19964.1| TPA: RNA-binding protein 42 [Bos taurus]
Length = 448
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|115495171|ref|NP_001069673.1| RNA-binding protein 42 [Bos taurus]
gi|122144265|sp|Q0P5L0.1|RBM42_BOVIN RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|112362368|gb|AAI19905.1| RNA binding motif protein 42 [Bos taurus]
Length = 448
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|91080423|ref|XP_968207.1| PREDICTED: similar to poly(A)-binding protein, putative [Tribolium
castaneum]
gi|270005575|gb|EFA02023.1| hypothetical protein TcasGA2_TC007648 [Tribolium castaneum]
Length = 294
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 70/93 (75%)
Query: 58 KRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
K+ NK + V+ + + N +DDFR+FCGDLGNDVTDELL RTF+KYPSF +A
Sbjct: 158 KKGNKNRKLMRVAGGQTWEDLSMNDWPDDDFRIFCGDLGNDVTDELLTRTFNKYPSFNRA 217
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RDKRTNK+KG+GF+SF DP DF +A KEMN
Sbjct: 218 KVIRDKRTNKSKGYGFISFSDPADFTKAMKEMN 250
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R +W + D ++DFR+FCGDLGNDVTDELL RTF+KYPSF +AKV+RDKRTN
Sbjct: 167 MRVAGGQTWEDLSMNDWPDDDFRIFCGDLGNDVTDELLTRTFNKYPSFNRAKVIRDKRTN 226
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GF+SF DP DF +A KEMN +
Sbjct: 227 KSKGYGFISFSDPADFTKAMKEMNGRY 253
>gi|81910848|sp|Q6AXT7.1|RBM42_RAT RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|50927398|gb|AAH79321.1| RNA binding motif protein 42 [Rattus norvegicus]
Length = 474
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 360 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 419
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 420 FVSFKDPSDYVRAMREMNGKY 440
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMN 150
+EMN
Sbjct: 433 MREMN 437
>gi|81916071|sp|Q91V81.1|RBM42_MOUSE RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|14318704|gb|AAH09148.1| RNA binding motif protein 42 [Mus musculus]
gi|15030077|gb|AAH11286.1| RNA binding motif protein 42 [Mus musculus]
gi|20072721|gb|AAH27372.1| RNA binding motif protein 42 [Mus musculus]
gi|34784652|gb|AAH57928.1| RNA binding motif protein 42 [Mus musculus]
Length = 474
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 360 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 419
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 420 FVSFKDPSDYVRAMREMNGKY 440
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMN 150
+EMN
Sbjct: 433 MREMN 437
>gi|149721862|ref|XP_001492304.1| PREDICTED: RNA-binding protein 42-like isoform 2 [Equus caballus]
Length = 445
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 331 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 390
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 391 FVSFKDPSDYVRAMREMNGKY 411
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 344 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 403
Query: 146 NKEMN 150
+EMN
Sbjct: 404 MREMN 408
>gi|291412002|ref|XP_002722286.1| PREDICTED: RNA binding motif protein 42 [Oryctolagus cuniculus]
Length = 499
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 385 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 444
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 445 FVSFKDPSDYVRAMREMNGKY 465
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 398 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 457
Query: 146 NKEMN 150
+EMN
Sbjct: 458 MREMN 462
>gi|109124374|ref|XP_001096319.1| PREDICTED: RNA-binding protein 42-like isoform 5 [Macaca mulatta]
gi|402905189|ref|XP_003915405.1| PREDICTED: RNA-binding protein 42 isoform 2 [Papio anubis]
Length = 451
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 337 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 396
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 397 FVSFKDPSDYVRAMREMNGKY 417
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 350 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 409
Query: 146 NKEMN 150
+EMN
Sbjct: 410 MREMN 414
>gi|114676748|ref|XP_001160516.1| PREDICTED: RNA-binding protein 42 isoform 4 [Pan troglodytes]
gi|12804031|gb|AAH02868.1| RBM42 protein [Homo sapiens]
gi|325463161|gb|ADZ15351.1| RNA binding motif protein 42 [synthetic construct]
Length = 451
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 337 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 396
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 397 FVSFKDPSDYVRAMREMNGKY 417
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 350 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 409
Query: 146 NKEMN 150
+EMN
Sbjct: 410 MREMN 414
>gi|56118915|ref|NP_001007900.1| RNA-binding protein 42 [Xenopus (Silurana) tropicalis]
gi|82234503|sp|Q66KL9.1|RBM42_XENTR RecName: Full=RNA-binding protein 42; AltName: Full=RNA-binding
motif protein 42
gi|51512955|gb|AAH80336.1| MGC79565 protein [Xenopus (Silurana) tropicalis]
Length = 392
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++R
Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVR 349
Query: 145 ANKEMN 150
A +EMN
Sbjct: 350 AMREMN 355
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++
Sbjct: 289 ESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYV 348
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 349 RAMREMNGKY 358
>gi|21594922|gb|AAH31682.1| RBM42 protein [Homo sapiens]
Length = 450
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 336 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 395
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 396 FVSFKDPSDYVRAMREMNGKY 416
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 349 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 408
Query: 146 NKEMN 150
+EMN
Sbjct: 409 MREMN 413
>gi|395846930|ref|XP_003796141.1| PREDICTED: RNA-binding protein 42 isoform 2 [Otolemur garnettii]
Length = 448
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|311257426|ref|XP_003127113.1| PREDICTED: RNA-binding protein 42-like isoform 1 [Sus scrofa]
Length = 448
Score = 115 bits (288), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|148692054|gb|EDL24001.1| RIKEN cDNA 3100004P22 [Mus musculus]
Length = 490
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 376 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 435
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 436 FVSFKDPSDYVRAMREMNGKY 456
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 389 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 448
Query: 146 NKEMN 150
+EMN
Sbjct: 449 MREMN 453
>gi|301771055|ref|XP_002920955.1| PREDICTED: RNA-binding protein 42-like isoform 1 [Ailuropoda
melanoleuca]
gi|281354285|gb|EFB29869.1| hypothetical protein PANDA_009762 [Ailuropoda melanoleuca]
Length = 477
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 363 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 422
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 423 FVSFKDPSDYVRAMREMNGKY 443
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMN 150
+EMN
Sbjct: 436 MREMN 440
>gi|426388304|ref|XP_004060581.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Gorilla
gorilla gorilla]
Length = 472
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 358 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 417
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 418 FVSFKDPSDYVRAMREMNGKY 438
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 371 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 430
Query: 146 NKEMN 150
+EMN
Sbjct: 431 MREMN 435
>gi|390478903|ref|XP_003735603.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42-like
[Callithrix jacchus]
Length = 498
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 384 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 443
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 444 FVSFKDPSDYVRAMREMNGKY 464
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 397 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 456
Query: 146 NKEMN 150
+EMN
Sbjct: 457 MREMN 461
>gi|301771057|ref|XP_002920956.1| PREDICTED: RNA-binding protein 42-like isoform 2 [Ailuropoda
melanoleuca]
Length = 448
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>gi|403292798|ref|XP_003937417.1| PREDICTED: RNA-binding protein 42 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 285 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 344
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 345 FVSFKDPSDYVRAMREMNGKY 365
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 298 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 357
Query: 146 NKEMN 150
+EMN
Sbjct: 358 MREMN 362
>gi|403292796|ref|XP_003937416.1| PREDICTED: RNA-binding protein 42 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 292 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 351
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 352 FVSFKDPSDYVRAMREMNGKY 372
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 305 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 364
Query: 146 NKEMN 150
+EMN
Sbjct: 365 MREMN 369
>gi|426243709|ref|XP_004015693.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Ovis aries]
Length = 510
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 396 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 455
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 456 FVSFKDPSDYVRAMREMNGKY 476
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 409 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 468
Query: 146 NKEMN 150
+EMN
Sbjct: 469 MREMN 473
>gi|357625712|gb|EHJ76062.1| putative polyA-binding protein [Danaus plexippus]
Length = 317
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDVTDELL RTF KY SF +AKV+RDKRTNK+KGFGFVSFKDP DFI+
Sbjct: 208 DDDFRMFCGDLGNDVTDELLTRTFGKYSSFQRAKVIRDKRTNKSKGFGFVSFKDPGDFIK 267
Query: 145 ANKEMN 150
A KEM+
Sbjct: 268 AMKEMD 273
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDVTDELL RTF KY SF +AKV+RDKRTNK+KGFGFVSFKDP DFI+
Sbjct: 208 DDDFRMFCGDLGNDVTDELLTRTFGKYSSFQRAKVIRDKRTNKSKGFGFVSFKDPGDFIK 267
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 268 AMKEMDGRY 276
>gi|395750999|ref|XP_002829121.2| PREDICTED: RNA-binding protein 42-like, partial [Pongo abelii]
Length = 380
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 266 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 325
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 326 FVSFKDPSDYVRAMREMNGKY 346
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 279 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 338
Query: 146 NKEMN 150
+EMN
Sbjct: 339 MREMN 343
>gi|334331295|ref|XP_001365764.2| PREDICTED: RNA-binding protein 42-like [Monodelphis domestica]
Length = 439
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 325 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 384
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 385 FVSFKDPSDYVRAMREMNGKY 405
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 338 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 397
Query: 146 NKEMN 150
+EMN
Sbjct: 398 MREMN 402
>gi|2098575|gb|AAB57629.1| F25451_2 [Homo sapiens]
Length = 339
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 225 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 284
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 285 FVSFKDPSDYVRAMREMNGKY 305
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 238 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 297
Query: 146 NKEMN 150
+EMN
Sbjct: 298 MREMN 302
>gi|332262176|ref|XP_003280141.1| PREDICTED: RNA-binding protein 42 [Nomascus leucogenys]
Length = 358
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 244 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 303
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 304 FVSFKDPSDYVRAMREMNGKY 324
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 257 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 316
Query: 146 NKEMN 150
+EMN
Sbjct: 317 MREMN 321
>gi|74181511|dbj|BAE30024.1| unnamed protein product [Mus musculus]
Length = 478
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D ++FR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 364 SSWEDPSLLEWDADNFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 423
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 424 FVSFKDPSDYVRAMREMNGKY 444
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D+FR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 377 DNFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 436
Query: 146 NKEMN 150
+EMN
Sbjct: 437 MREMN 441
>gi|289741817|gb|ADD19656.1| RNA-binding protein [Glossina morsitans morsitans]
Length = 327
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 61/66 (92%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+KYPSF +A+V+RDKRT K+KGFGFVSF++PQDFI+
Sbjct: 221 DDDFRIFCGDLGNDVNDEVLTRTFNKYPSFQRARVIRDKRTGKSKGFGFVSFREPQDFIK 280
Query: 145 ANKEMN 150
A KEM+
Sbjct: 281 AMKEMD 286
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 65/79 (82%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T D ++DFR+FCGDLGNDV DE+L RTF+KYPSF +A+V+RDKRT K+KGFGFV
Sbjct: 211 WEDPTLADWPDDDFRIFCGDLGNDVNDEVLTRTFNKYPSFQRARVIRDKRTGKSKGFGFV 270
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF++PQDFI+A KEM+ +
Sbjct: 271 SFREPQDFIKAMKEMDGRY 289
>gi|170038950|ref|XP_001847310.1| poly(A)-binding protein [Culex quinquefasciatus]
gi|167862551|gb|EDS25934.1| poly(A)-binding protein [Culex quinquefasciatus]
Length = 291
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 61/67 (91%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+DDFR+FCGDLGNDV DELL RTF+K+ SF +AKV+RDKRT+K+KG+GFVSFKDPQDFI
Sbjct: 221 ADDDFRIFCGDLGNDVNDELLTRTFNKFASFQRAKVIRDKRTSKSKGYGFVSFKDPQDFI 280
Query: 144 RANKEMN 150
RA KEM+
Sbjct: 281 RAMKEMD 287
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 62/68 (91%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DELL RTF+K+ SF +AKV+RDKRT+K+KG+GFVSFKDPQDFIR
Sbjct: 222 DDDFRIFCGDLGNDVNDELLTRTFNKFASFQRAKVIRDKRTSKSKGYGFVSFKDPQDFIR 281
Query: 80 ANKEMNDD 87
A KEM+ +
Sbjct: 282 AMKEMDGE 289
>gi|281206865|gb|EFA81049.1| ssRNA-binding protein [Polysphondylium pallidum PN500]
Length = 2858
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 53/78 (67%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 10 SSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
+SW T D NDFRLF GDLGNDVTDELL + F +YPSFLKAKV+RDKRT K+KGFG
Sbjct: 192 NSWEDPTLSEWDSNDFRLFVGDLGNDVTDELLKQAFQRYPSFLKAKVLRDKRTLKSKGFG 251
Query: 68 FVSFKDPQDFIRANKEMN 85
FVSF D +D++RA +EMN
Sbjct: 252 FVSFSDSKDYVRALREMN 269
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/69 (71%), Positives = 59/69 (85%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++DFRLF GDLGNDVTDELL + F +YPSFLKAKV+RDKRT K+KGFGFVSF D +D++R
Sbjct: 204 SNDFRLFVGDLGNDVTDELLKQAFQRYPSFLKAKVLRDKRTLKSKGFGFVSFSDSKDYVR 263
Query: 145 ANKEMNEFP 153
A +EMN P
Sbjct: 264 ALREMNGTP 272
>gi|321468408|gb|EFX79393.1| hypothetical protein DAPPUDRAFT_52452 [Daphnia pulex]
Length = 130
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 59/70 (84%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D ND+R+FCGDLGNDVTDE+L R F K+PSF KAKV+RD R+NKTKGFGFVSFKDP DF
Sbjct: 25 DPNDYRIFCGDLGNDVTDEVLARVFGKFPSFQKAKVIRDARSNKTKGFGFVSFKDPTDFT 84
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 85 RAMREMNGKY 94
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 57/65 (87%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGNDVTDE+L R F K+PSF KAKV+RD R+NKTKGFGFVSFKDP DF RA
Sbjct: 27 NDYRIFCGDLGNDVTDEVLARVFGKFPSFQKAKVIRDARSNKTKGFGFVSFKDPTDFTRA 86
Query: 146 NKEMN 150
+EMN
Sbjct: 87 MREMN 91
>gi|354486915|ref|XP_003505621.1| PREDICTED: RNA-binding protein 42-like [Cricetulus griseus]
Length = 335
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R S++PSFLKAKV+RDKRT KTKG+G
Sbjct: 221 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAVSRFPSFLKAKVIRDKRTGKTKGYG 280
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 281 FVSFKDPSDYVRAMREMNGKY 301
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 58/65 (89%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R S++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 234 DDFRIFCGDLGNEVNDDILARAVSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 293
Query: 146 NKEMN 150
+EMN
Sbjct: 294 MREMN 298
>gi|341895599|gb|EGT51534.1| hypothetical protein CAEBREN_12017 [Caenorhabditis brenneri]
Length = 304
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DENDFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++
Sbjct: 201 DENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 260
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 261 RAMREMDGKY 270
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 58/66 (87%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++R
Sbjct: 202 ENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 261
Query: 145 ANKEMN 150
A +EM+
Sbjct: 262 AMREMD 267
>gi|353230344|emb|CCD76515.1| hypothetical protein Smp_103990 [Schistosoma mansoni]
Length = 302
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF
Sbjct: 198 DPNDFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFT 257
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 258 RAMREMNGKY 267
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 57/65 (87%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF RA
Sbjct: 200 NDFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRA 259
Query: 146 NKEMN 150
+EMN
Sbjct: 260 MREMN 264
>gi|17556216|ref|NP_498090.1| Protein TAG-262 [Caenorhabditis elegans]
gi|373219737|emb|CCD69850.1| Protein TAG-262 [Caenorhabditis elegans]
Length = 302
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DENDFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++
Sbjct: 199 DENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 258
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 259 RAMREMDGKY 268
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 58/66 (87%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++R
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVR 259
Query: 145 ANKEMN 150
A +EM+
Sbjct: 260 AMREMD 265
>gi|21357051|ref|NP_649552.1| CG2931 [Drosophila melanogaster]
gi|7296727|gb|AAF52006.1| CG2931 [Drosophila melanogaster]
gi|17945997|gb|AAL49042.1| RE50009p [Drosophila melanogaster]
gi|220948882|gb|ACL86984.1| CG2931-PA [synthetic construct]
gi|220957716|gb|ACL91401.1| CG2931-PA [synthetic construct]
Length = 302
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 254
Query: 145 ANKEMN 150
A KEM+
Sbjct: 255 AMKEMD 260
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 254
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 255 AMKEMDGRY 263
>gi|194767621|ref|XP_001965913.1| GF11626 [Drosophila ananassae]
gi|190619756|gb|EDV35280.1| GF11626 [Drosophila ananassae]
Length = 310
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 203 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 262
Query: 145 ANKEMN 150
A KEM+
Sbjct: 263 AMKEMD 268
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
S W + D ++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFG
Sbjct: 191 SVWEDSSLADWPDDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFG 250
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSF++P DFIRA KEM+ +
Sbjct: 251 FVSFREPADFIRAMKEMDGRY 271
>gi|195501986|ref|XP_002098031.1| GE24162 [Drosophila yakuba]
gi|194184132|gb|EDW97743.1| GE24162 [Drosophila yakuba]
Length = 305
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 198 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 257
Query: 145 ANKEMN 150
A KEM+
Sbjct: 258 AMKEMD 263
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 198 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 257
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 258 AMKEMDGRY 266
>gi|308473531|ref|XP_003098990.1| CRE-TAG-262 protein [Caenorhabditis remanei]
gi|308267954|gb|EFP11907.1| CRE-TAG-262 protein [Caenorhabditis remanei]
Length = 296
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DENDFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++
Sbjct: 193 DENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 252
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 253 RAMREMDGKY 262
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 58/65 (89%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++RA
Sbjct: 195 NDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRA 254
Query: 146 NKEMN 150
+EM+
Sbjct: 255 MREMD 259
>gi|195453455|ref|XP_002073796.1| GK12952 [Drosophila willistoni]
gi|194169881|gb|EDW84782.1| GK12952 [Drosophila willistoni]
Length = 302
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 254
Query: 145 ANKEMN 150
A KEM+
Sbjct: 255 AMKEMD 260
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
S W + D ++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFG
Sbjct: 183 SVWEDSSLADWPDDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFG 242
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSF++P DFIRA KEM+ +
Sbjct: 243 FVSFREPADFIRAMKEMDGRY 263
>gi|268572521|ref|XP_002648982.1| C. briggsae CBR-TAG-262 protein [Caenorhabditis briggsae]
Length = 291
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DENDFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++
Sbjct: 188 DENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 247
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 248 RAMREMDGKY 257
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 58/65 (89%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++RA
Sbjct: 190 NDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRA 249
Query: 146 NKEMN 150
+EM+
Sbjct: 250 MREMD 254
>gi|195152461|ref|XP_002017155.1| GL22151 [Drosophila persimilis]
gi|198453807|ref|XP_001359347.2| GA15528 [Drosophila pseudoobscura pseudoobscura]
gi|194112212|gb|EDW34255.1| GL22151 [Drosophila persimilis]
gi|198132522|gb|EAL28492.2| GA15528 [Drosophila pseudoobscura pseudoobscura]
Length = 303
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 196 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 255
Query: 145 ANKEMN 150
A KEM+
Sbjct: 256 AMKEMD 261
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 196 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 255
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 256 AMKEMDGRY 264
>gi|195062939|ref|XP_001996282.1| GH22277 [Drosophila grimshawi]
gi|193899777|gb|EDV98643.1| GH22277 [Drosophila grimshawi]
Length = 300
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 193 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 252
Query: 145 ANKEMN 150
A KEM+
Sbjct: 253 AMKEMD 258
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 193 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 252
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 253 AMKEMDGRY 261
>gi|195391954|ref|XP_002054624.1| GJ22705 [Drosophila virilis]
gi|194152710|gb|EDW68144.1| GJ22705 [Drosophila virilis]
Length = 302
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 254
Query: 145 ANKEMN 150
A KEM+
Sbjct: 255 AMKEMD 260
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+V+RDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVIRDKRTGKSKGFGFVSFREPADFIR 254
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 255 AMKEMDGRY 263
>gi|156380995|ref|XP_001632052.1| predicted protein [Nematostella vectensis]
gi|156219102|gb|EDO39989.1| predicted protein [Nematostella vectensis]
Length = 126
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+FCGDLG++VTDE L R F+KY SFLKAK+VRDK++NK+KG+GFVSFKDP DFI
Sbjct: 23 DPNDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFI 82
Query: 79 RANKEMNDDF 88
+A +EMN +
Sbjct: 83 KAMREMNGKY 92
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLG++VTDE L R F+KY SFLKAK+VRDK++NK+KG+GFVSFKDP DFI+A
Sbjct: 25 NDFRIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKA 84
Query: 146 NKEMN 150
+EMN
Sbjct: 85 MREMN 89
>gi|328766879|gb|EGF76931.1| hypothetical protein BATDEDRAFT_92096 [Batrachochytrium
dendrobatidis JAM81]
Length = 324
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 62/70 (88%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DEND+RLFCGD+GN+V+D+LL ++FSKYPS L+A VVRDK N++KGFGFVSFKDP+DF+
Sbjct: 220 DENDYRLFCGDIGNEVSDDLLTKSFSKYPSMLRAHVVRDKN-NQSKGFGFVSFKDPEDFV 278
Query: 79 RANKEMNDDF 88
+A +EMN +
Sbjct: 279 KAMREMNGKY 288
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 59/65 (90%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGD+GN+V+D+LL ++FSKYPS L+A VVRDK N++KGFGFVSFKDP+DF++A
Sbjct: 222 NDYRLFCGDIGNEVSDDLLTKSFSKYPSMLRAHVVRDKN-NQSKGFGFVSFKDPEDFVKA 280
Query: 146 NKEMN 150
+EMN
Sbjct: 281 MREMN 285
>gi|340378078|ref|XP_003387555.1| PREDICTED: hypothetical protein LOC100633261 [Amphimedon
queenslandica]
Length = 257
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W T D ND+R+FCGDLGNDV+D+ L + F KYPSF+KAKV+RDK +
Sbjct: 130 LRIGGGQVWEDLTLHEWDPNDYRIFCGDLGNDVSDDTLAKAFMKYPSFMKAKVIRDKWSK 189
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKGFGFVSFKDP DF+ A +EMN +
Sbjct: 190 KTKGFGFVSFKDPHDFMEAMREMNGKY 216
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGNDV+D+ L + F KYPSF+KAKV+RDK + KTKGFGFVSFKDP DF+ A
Sbjct: 149 NDYRIFCGDLGNDVSDDTLAKAFMKYPSFMKAKVIRDKWSKKTKGFGFVSFKDPHDFMEA 208
Query: 146 NKEMN 150
+EMN
Sbjct: 209 MREMN 213
>gi|76155203|gb|AAX26456.2| SJCHGC03253 protein [Schistosoma japonicum]
Length = 158
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 59/70 (84%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF
Sbjct: 54 DPNDFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFT 113
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 114 RAMREMNGKY 123
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 57/65 (87%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF RA
Sbjct: 56 NDFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRA 115
Query: 146 NKEMN 150
+EMN
Sbjct: 116 MREMN 120
>gi|195109668|ref|XP_001999405.1| GI23084 [Drosophila mojavensis]
gi|193915999|gb|EDW14866.1| GI23084 [Drosophila mojavensis]
Length = 302
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFI+
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIK 254
Query: 145 ANKEMN 150
A KEM+
Sbjct: 255 AMKEMD 260
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 61/69 (88%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFI+
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIK 254
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 255 AMKEMDGRY 263
>gi|195343695|ref|XP_002038431.1| GM10617 [Drosophila sechellia]
gi|194133452|gb|EDW54968.1| GM10617 [Drosophila sechellia]
Length = 147
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 40 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 99
Query: 145 ANKEMN 150
A KEM+
Sbjct: 100 AMKEMD 105
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 40 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 99
Query: 80 ANKEMN 85
A KEM+
Sbjct: 100 AMKEMD 105
>gi|148232282|ref|NP_001091125.1| RNA binding motif protein 42 [Xenopus laevis]
gi|120537888|gb|AAI29577.1| LOC100036875 protein [Xenopus laevis]
Length = 385
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 58/66 (87%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLG +V D++L R FS+Y SFL+AKV+RDKRT KTKGFGFVSFKDP D++R
Sbjct: 283 SDDFRIFCGDLGIEVNDDILARAFSRYSSFLRAKVIRDKRTGKTKGFGFVSFKDPNDYVR 342
Query: 145 ANKEMN 150
A +E+N
Sbjct: 343 AMREVN 348
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 59/70 (84%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLG +V D++L R FS+Y SFL+AKV+RDKRT KTKGFGFVSFKDP D++
Sbjct: 282 ESDDFRIFCGDLGIEVNDDILARAFSRYSSFLRAKVIRDKRTGKTKGFGFVSFKDPNDYV 341
Query: 79 RANKEMNDDF 88
RA +E+N +
Sbjct: 342 RAMREVNGKY 351
>gi|194898783|ref|XP_001978947.1| GG10948 [Drosophila erecta]
gi|190650650|gb|EDV47905.1| GG10948 [Drosophila erecta]
Length = 305
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+ SF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 198 DDDFRIFCGDLGNDVNDEVLTRTFNKFASFQRARVVRDKRTGKSKGFGFVSFREPADFIR 257
Query: 145 ANKEMN 150
A KEM+
Sbjct: 258 AMKEMD 263
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+ SF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 198 DDDFRIFCGDLGNDVNDEVLTRTFNKFASFQRARVVRDKRTGKSKGFGFVSFREPADFIR 257
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 258 AMKEMDGRY 266
>gi|148907585|gb|ABR16922.1| unknown [Picea sitchensis]
Length = 423
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V DE+L + FS+Y SF+ A+VVRDKRT KT+G+GF
Sbjct: 301 SWEDPTLADWPENDFRLFCGDLGNEVNDEVLTKAFSRYASFIMARVVRDKRTGKTRGYGF 360
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 361 VSFSNPSDLALALKEMNGKY 380
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V DE+L + FS+Y SF+ A+VVRDKRT KT+G+GFVSF +P D A
Sbjct: 313 NDFRLFCGDLGNEVNDEVLTKAFSRYASFIMARVVRDKRTGKTRGYGFVSFSNPSDLALA 372
Query: 146 NKEMN 150
KEMN
Sbjct: 373 LKEMN 377
>gi|358332223|dbj|GAA31943.2| RNA-binding protein 42 [Clonorchis sinensis]
Length = 458
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+FCGDLGN+V+D+ L R F++Y SF KAKVVRDKRT K++G+GFVSF DP DF
Sbjct: 354 DPNDFRIFCGDLGNEVSDDTLTRAFNRYASFQKAKVVRDKRTGKSRGYGFVSFSDPADFT 413
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 414 RAMREMNGKY 423
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 55/65 (84%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+D+ L R F++Y SF KAKVVRDKRT K++G+GFVSF DP DF RA
Sbjct: 356 NDFRIFCGDLGNEVSDDTLTRAFNRYASFQKAKVVRDKRTGKSRGYGFVSFSDPADFTRA 415
Query: 146 NKEMN 150
+EMN
Sbjct: 416 MREMN 420
>gi|237836585|ref|XP_002367590.1| RNA recognition motif-containing protein [Toxoplasma gondii ME49]
gi|211965254|gb|EEB00450.1| RNA recognition motif-containing protein [Toxoplasma gondii ME49]
Length = 302
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W T ++ ENDFR+FCGDLGN+VTDE+L F KY SF KA+VVRDKRT
Sbjct: 105 LRKGAGKIWSDPTLDEWPENDFRVFCGDLGNEVTDEVLTNAFRKYKSFAKARVVRDKRTG 164
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
KT+G+GFVSF DP D ++A KEMN
Sbjct: 165 KTRGYGFVSFSDPNDMLKALKEMN 188
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+VTDE+L F KY SF KA+VVRDKRT KT+G+GFVSF DP D ++A
Sbjct: 124 NDFRVFCGDLGNEVTDEVLTNAFRKYKSFAKARVVRDKRTGKTRGYGFVSFSDPNDMLKA 183
Query: 146 NKEMN 150
KEMN
Sbjct: 184 LKEMN 188
>gi|195568464|ref|XP_002102236.1| GD19605 [Drosophila simulans]
gi|194198163|gb|EDX11739.1| GD19605 [Drosophila simulans]
Length = 266
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+ RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 159 DDDFRIFCGDLGNDVNDEVGTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 218
Query: 145 ANKEMN 150
A KEM+
Sbjct: 219 AMKEMD 224
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+ RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 159 DDDFRIFCGDLGNDVNDEVGTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 218
Query: 80 ANKEMNDDF 88
A KEM+ +
Sbjct: 219 AMKEMDGRY 227
>gi|221483982|gb|EEE22286.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
gi|221505260|gb|EEE30914.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 302
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W T ++ ENDFR+FCGDLGN+VTDE+L F KY SF KA+VVRDKRT
Sbjct: 105 LRKGAGKIWSDPTLDEWPENDFRVFCGDLGNEVTDEVLTNAFRKYKSFAKARVVRDKRTG 164
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
KT+G+GFVSF DP D ++A KEMN
Sbjct: 165 KTRGYGFVSFSDPNDMLKALKEMN 188
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+VTDE+L F KY SF KA+VVRDKRT KT+G+GFVSF DP D ++A
Sbjct: 124 NDFRVFCGDLGNEVTDEVLTNAFRKYKSFAKARVVRDKRTGKTRGYGFVSFSDPNDMLKA 183
Query: 146 NKEMN 150
KEMN
Sbjct: 184 LKEMN 188
>gi|209880632|ref|XP_002141755.1| RRM domain-containing protein [Cryptosporidium muris RN66]
gi|209557361|gb|EEA07406.1| RRM domain-containing protein [Cryptosporidium muris RN66]
Length = 152
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W+ T + END+RLFCGDLGND+T+E+L F YPSF K KV+RDK TN
Sbjct: 7 LRKAAGQVWVDNTLNEWPENDYRLFCGDLGNDITEEVLANNFQIYPSFQKCKVIRDKYTN 66
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K++G+GF+SF DPQD +RA KEMN +
Sbjct: 67 KSRGYGFISFGDPQDMLRALKEMNRKY 93
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ +D+RLFCGDLGND+T+E+L F YPSF K KV+RDK TNK++G+GF+SF DPQ
Sbjct: 21 NEWPENDYRLFCGDLGNDITEEVLANNFQIYPSFQKCKVIRDKYTNKSRGYGFISFGDPQ 80
Query: 141 DFIRANKEMN 150
D +RA KEMN
Sbjct: 81 DMLRALKEMN 90
>gi|402589770|gb|EJW83701.1| RNA recognition domain-containing protein [Wuchereria bancrofti]
Length = 344
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W K+ D NDFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTN
Sbjct: 224 LRCGGGQVWEDKSLAEWDPNDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTN 283
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSFK DF+RA +EM+ +
Sbjct: 284 KSKGYGFVSFKHQDDFVRACREMDGKY 310
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+RA
Sbjct: 243 NDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTNKSKGYGFVSFKHQDDFVRA 302
Query: 146 NKEMN 150
+EM+
Sbjct: 303 CREMD 307
>gi|170589543|ref|XP_001899533.1| RNA recognition motif. [Brugia malayi]
gi|158593746|gb|EDP32341.1| RNA recognition motif [Brugia malayi]
Length = 344
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W K+ D NDFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTN
Sbjct: 224 LRCGGGQVWEDKSLAEWDPNDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTN 283
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSFK DF+RA +EM+ +
Sbjct: 284 KSKGYGFVSFKHQDDFVRACREMDGKY 310
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+RA
Sbjct: 243 NDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTNKSKGYGFVSFKHQDDFVRA 302
Query: 146 NKEMN 150
+EM+
Sbjct: 303 CREMD 307
>gi|384497577|gb|EIE88068.1| hypothetical protein RO3G_12779 [Rhizopus delemar RA 99-880]
Length = 292
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D+ D+RLF GDLGN+VT+ELL +TFSKYPS + +VVRD RT K+KGFGF+SFKDP DF+
Sbjct: 187 DDQDYRLFAGDLGNEVTEELLFKTFSKYPSLTRTRVVRDSRTMKSKGFGFISFKDPDDFV 246
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 247 RAWREMNGKY 256
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 56/66 (84%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+ D+RLF GDLGN+VT+ELL +TFSKYPS + +VVRD RT K+KGFGF+SFKDP DF+R
Sbjct: 188 DQDYRLFAGDLGNEVTEELLFKTFSKYPSLTRTRVVRDSRTMKSKGFGFISFKDPDDFVR 247
Query: 145 ANKEMN 150
A +EMN
Sbjct: 248 AWREMN 253
>gi|312074044|ref|XP_003139793.1| RNA recognition domain-containing protein [Loa loa]
gi|307765042|gb|EFO24276.1| RNA recognition domain-containing protein [Loa loa]
Length = 343
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+
Sbjct: 240 DPNDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTNKSKGYGFVSFKHQDDFV 299
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 300 RACREMDGKY 309
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+RA
Sbjct: 242 NDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIREARTNKSKGYGFVSFKHQDDFVRA 301
Query: 146 NKEMN 150
+EM+
Sbjct: 302 CREMD 306
>gi|326438050|gb|EGD83620.1| rrm-containing protein [Salpingoeca sp. ATCC 50818]
Length = 184
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 5 RPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
R G W T + D NDFR+FCGDLG++V+DE L R FSKYPSF KAK+VRD+ T K
Sbjct: 64 RQGGGEKWYDPTLDEWDPNDFRIFCGDLGSEVSDEALARAFSKYPSFQKAKIVRDRSTRK 123
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDF 88
KGFGFVSFKD +D++RA KEMN +
Sbjct: 124 PKGFGFVSFKDGKDYLRALKEMNGKY 149
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLG++V+DE L R FSKYPSF KAK+VRD+ T K KGFGFVSFKD +D++RA
Sbjct: 82 NDFRIFCGDLGSEVSDEALARAFSKYPSFQKAKIVRDRSTRKPKGFGFVSFKDGKDYLRA 141
Query: 146 NKEMN 150
KEMN
Sbjct: 142 LKEMN 146
>gi|195995535|ref|XP_002107636.1| hypothetical protein TRIADDRAFT_7323 [Trichoplax adhaerens]
gi|190588412|gb|EDV28434.1| hypothetical protein TRIADDRAFT_7323, partial [Trichoplax
adhaerens]
Length = 114
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 62/81 (76%), Gaps = 6/81 (7%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
+S+W D NDFRLFCGDLGN+VT+ELL R FS+Y S KVVRDKR+NK+KG+G
Sbjct: 16 TLSTW------DTNDFRLFCGDLGNEVTEELLTRIFSRYSSLQNVKVVRDKRSNKSKGYG 69
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
F+SFKD +D++RA KEMN +
Sbjct: 70 FLSFKDSKDYLRAMKEMNGKY 90
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+VT+ELL R FS+Y S KVVRDKR+NK+KG+GF+SFKD +D++RA
Sbjct: 23 NDFRLFCGDLGNEVTEELLTRIFSRYSSLQNVKVVRDKRSNKSKGYGFLSFKDSKDYLRA 82
Query: 146 NKEMN 150
KEMN
Sbjct: 83 MKEMN 87
>gi|324509970|gb|ADY44175.1| RNA-binding protein 42 [Ascaris suum]
Length = 302
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+
Sbjct: 199 DPNDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIRESRTNKSKGYGFVSFKHQDDFV 258
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 259 RACREMDGKY 268
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCGDLGN+V+DELL + F KYPSF KAKV+R+ RTNK+KG+GFVSFK DF+RA
Sbjct: 201 NDFRIFCGDLGNEVSDELLAKAFRKYPSFQKAKVIRESRTNKSKGYGFVSFKHQDDFVRA 260
Query: 146 NKEMN 150
+EM+
Sbjct: 261 CREMD 265
>gi|401405957|ref|XP_003882428.1| putative RNA recognition motif-containing protein [Neospora caninum
Liverpool]
gi|325116843|emb|CBZ52396.1| putative RNA recognition motif-containing protein [Neospora caninum
Liverpool]
Length = 301
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W T ++ ENDFR+FCGDLGN+VTDE+L F KY SF KA+VVRDKRT
Sbjct: 104 LRKGAGHIWSDPTLDEWPENDFRVFCGDLGNEVTDEVLTNAFRKYRSFAKARVVRDKRTG 163
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
KT+G+GFVSF DP D ++A KEMN
Sbjct: 164 KTRGYGFVSFLDPNDMLKALKEMN 187
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 5/95 (5%)
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
++K + KG G + + DP ++ +DFR+FCGDLGN+VTDE+L F KY SF
Sbjct: 98 KEKTVHLRKGAGHI-WSDPT----LDEWPENDFRVFCGDLGNEVTDEVLTNAFRKYRSFA 152
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KA+VVRDKRT KT+G+GFVSF DP D ++A KEMN
Sbjct: 153 KARVVRDKRTGKTRGYGFVSFLDPNDMLKALKEMN 187
>gi|294925492|ref|XP_002778935.1| rrm-containing protein, putative [Perkinsus marinus ATCC 50983]
gi|239887781|gb|EER10730.1| rrm-containing protein, putative [Perkinsus marinus ATCC 50983]
Length = 186
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 15/132 (11%)
Query: 42 TFSKYPSFLKAKVVRDKRTNKTKG----FGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97
T + P+ + A R K K KG G + DP ++ +DDFR+FCGDLGN
Sbjct: 15 TLNGVPAGVVAPQKRSKHKVKAKGQLRRAGGKIWADPT----LSEWPSDDFRIFCGDLGN 70
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157
+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+SF+DP+D I+A KEMN H +V
Sbjct: 71 EVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFLSFRDPEDMIKALKEMN---HKYV 127
Query: 158 GDLKTRSSITLK 169
G+ ITLK
Sbjct: 128 GN----RPITLK 135
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T + +DFR+FCGDLGN+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+
Sbjct: 48 WADPTLSEWPSDDFRIFCGDLGNEVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFL 107
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF+DP+D I+A KEMN +
Sbjct: 108 SFRDPEDMIKALKEMNHKY 126
>gi|294891120|ref|XP_002773430.1| rrm-containing protein, putative [Perkinsus marinus ATCC 50983]
gi|239878583|gb|EER05246.1| rrm-containing protein, putative [Perkinsus marinus ATCC 50983]
Length = 290
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 79/122 (64%), Gaps = 11/122 (9%)
Query: 42 TFSKYPSFLKAKVVRDKRTNKTKG----FGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97
T + P+ + A R K K KG G + DP ++ +DDFR+FCGDLGN
Sbjct: 30 TLNGVPAGVVAPQKRSKHKVKAKGQLRRAGGKIWADPT----LSEWPSDDFRIFCGDLGN 85
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157
+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+SF+DP+D I+A KEMN H +V
Sbjct: 86 EVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFLSFRDPEDMIKALKEMN---HKYV 142
Query: 158 GD 159
G+
Sbjct: 143 GN 144
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T + +DFR+FCGDLGN+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+
Sbjct: 63 WADPTLSEWPSDDFRIFCGDLGNEVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFL 122
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF+DP+D I+A KEMN +
Sbjct: 123 SFRDPEDMIKALKEMNHKY 141
>gi|294936493|ref|XP_002781781.1| RRM domain protein, putative [Perkinsus marinus ATCC 50983]
gi|239892741|gb|EER13576.1| RRM domain protein, putative [Perkinsus marinus ATCC 50983]
Length = 127
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%), Gaps = 7/85 (8%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGN+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+SF+DP+D I+
Sbjct: 28 SDDFRIFCGDLGNEVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFLSFRDPEDMIK 87
Query: 145 ANKEMNEFPHLFVGDLKTRSSITLK 169
A KEMN H +VG+ ITLK
Sbjct: 88 ALKEMN---HKYVGN----RPITLK 105
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 57/68 (83%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+DFR+FCGDLGN+VTDELL+ +F +Y S AK+VRDKR+ K+KGFGF+SF+DP+D I+A
Sbjct: 29 DDFRIFCGDLGNEVTDELLLSSFKQYSSLQMAKIVRDKRSGKSKGFGFLSFRDPEDMIKA 88
Query: 81 NKEMNDDF 88
KEMN +
Sbjct: 89 LKEMNHKY 96
>gi|440796521|gb|ELR17630.1| RNA recognition domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 264
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 81/127 (63%), Gaps = 12/127 (9%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFR+F GD+GN+V DE+L F+KYPSF ++KVVRD ++ KTKG+GF
Sbjct: 136 SWEDTTLADWPENDFRIFVGDIGNEVNDEILKSAFAKYPSFQRSKVVRDPKSLKTKGYGF 195
Query: 69 VSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV---RDKRT 125
VSF D +D+++A +EMN + +GN +L T+ +Y KA+ V + ++
Sbjct: 196 VSFSDARDYVKALREMNGKY------IGNRPV-KLRKSTWKQYTDEEKAQSVLQKQQEQQ 248
Query: 126 NKTKGFG 132
NK KG G
Sbjct: 249 NKAKGKG 255
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 54/65 (83%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GD+GN+V DE+L F+KYPSF ++KVVRD ++ KTKG+GFVSF D +D+++A
Sbjct: 148 NDFRIFVGDIGNEVNDEILKSAFAKYPSFQRSKVVRDPKSLKTKGYGFVSFSDARDYVKA 207
Query: 146 NKEMN 150
+EMN
Sbjct: 208 LREMN 212
>gi|115625792|ref|XP_784687.2| PREDICTED: uncharacterized protein LOC579479 [Strongylocentrotus
purpuratus]
Length = 425
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 58/70 (82%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFRLF GDLGN+VT++ L + F YPS+++ K++RDKRTNKTKG+GFVSFKDP+DF+
Sbjct: 322 DPNDFRLFAGDLGNEVTEDTLTKVFGSYPSYIRCKIIRDKRTNKTKGYGFVSFKDPRDFV 381
Query: 79 RANKEMNDDF 88
+A K+ N +
Sbjct: 382 QAVKDWNGKY 391
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 56/65 (86%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLF GDLGN+VT++ L + F YPS+++ K++RDKRTNKTKG+GFVSFKDP+DF++A
Sbjct: 324 NDFRLFAGDLGNEVTEDTLTKVFGSYPSYIRCKIIRDKRTNKTKGYGFVSFKDPRDFVQA 383
Query: 146 NKEMN 150
K+ N
Sbjct: 384 VKDWN 388
>gi|256068052|ref|XP_002570673.1| rrm-containing protein [Schistosoma mansoni]
Length = 64
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
DFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF RA
Sbjct: 1 DFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRAM 60
Query: 82 KEMN 85
+EMN
Sbjct: 61 REMN 64
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
DFRLFCGDLGN+VTD+ L R F++YPSF KAKVVRDKRT+K++G+GFVSF DP DF RA
Sbjct: 1 DFRLFCGDLGNEVTDDTLARAFNRYPSFQKAKVVRDKRTSKSRGYGFVSFSDPGDFTRAM 60
Query: 147 KEMN 150
+EMN
Sbjct: 61 REMN 64
>gi|213409487|ref|XP_002175514.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
gi|212003561|gb|EEB09221.1| RNA-binding protein [Schizosaccharomyces japonicus yFS275]
Length = 191
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D N FRLFCGDLGNDVTDE L R F+ YP+ +KAKVVRD T K+KG+GFVSF+DP+ F+
Sbjct: 32 DPNHFRLFCGDLGNDVTDETLYRAFTPYPTLVKAKVVRD-HTGKSKGYGFVSFRDPEQFL 90
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 91 RAWREMNGKY 100
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+ FRLFCGDLGNDVTDE L R F+ YP+ +KAKVVRD T K+KG+GFVSF+DP+ F+RA
Sbjct: 34 NHFRLFCGDLGNDVTDETLYRAFTPYPTLVKAKVVRD-HTGKSKGYGFVSFRDPEQFLRA 92
Query: 146 NKEMN 150
+EMN
Sbjct: 93 WREMN 97
>gi|242065806|ref|XP_002454192.1| hypothetical protein SORBIDRAFT_04g026430 [Sorghum bicolor]
gi|241934023|gb|EES07168.1| hypothetical protein SORBIDRAFT_04g026430 [Sorghum bicolor]
Length = 242
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V D++L +TFSKYPSF A+V+RDK T KTKG+GF
Sbjct: 120 SWEDPTLADWPENDFRLFCGDLGNEVNDDVLAKTFSKYPSFSMARVIRDKWTGKTKGYGF 179
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + D A KEMN +
Sbjct: 180 VSFANASDLTSALKEMNGKY 199
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D++L +TFSKYPSF A+V+RDK T KTKG+GFVSF + D A
Sbjct: 132 NDFRLFCGDLGNEVNDDVLAKTFSKYPSFSMARVIRDKWTGKTKGYGFVSFANASDLTSA 191
Query: 146 NKEMN 150
KEMN
Sbjct: 192 LKEMN 196
>gi|195623700|gb|ACG33680.1| hypothetical protein [Zea mays]
Length = 237
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 115 SWEDPTLTDWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 174
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 175 VSFSNPTDLAAAIKEMNGKY 194
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 127 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 186
Query: 146 NKEMN 150
KEMN
Sbjct: 187 IKEMN 191
>gi|147806450|emb|CAN63219.1| hypothetical protein VITISV_033169 [Vitis vinifera]
Length = 257
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 60/80 (75%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W T D END+RLFCGDLGN+V D++L ++FS++PSF A+VVRDKRT KT+GFGF
Sbjct: 135 TWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARVVRDKRTGKTRGFGF 194
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 195 VSFSNPSDLAAALKEMNGKY 214
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L ++FS++PSF A+VVRDKRT KT+GFGFVSF +P D A
Sbjct: 147 NDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARVVRDKRTGKTRGFGFVSFSNPSDLAAA 206
Query: 146 NKEMN 150
KEMN
Sbjct: 207 LKEMN 211
>gi|225443254|ref|XP_002272469.1| PREDICTED: CUGBP Elav-like family member 5 [Vitis vinifera]
Length = 257
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W T D END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KT+GFGF
Sbjct: 135 TWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTRGFGF 194
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 195 VSFSNPSDLAAALKEMNGKY 214
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KT+GFGFVSF +P D A
Sbjct: 147 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTRGFGFVSFSNPSDLAAA 206
Query: 146 NKEMN 150
KEMN
Sbjct: 207 LKEMN 211
>gi|403221862|dbj|BAM39994.1| RNA binding motif protein 42 [Theileria orientalis strain Shintoku]
Length = 226
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 2 LGLRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 59
+ LR W T ED +ND+R+FCGDLGN+VTDE+L F +YPSF +A+VVRD
Sbjct: 43 VHLRKAAGVIWNDPTLEDWPKNDYRIFCGDLGNEVTDEILANAFKRYPSFQRARVVRDNN 102
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
+ KTKG+GFVS +P D +RA KEMN+ F
Sbjct: 103 SGKTKGYGFVSLLNPDDMLRALKEMNNKF 131
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+VTDE+L F +YPSF +A+VVRD + KTKG+GFVS +P D +RA
Sbjct: 64 NDYRIFCGDLGNEVTDEILANAFKRYPSFQRARVVRDNNSGKTKGYGFVSLLNPDDMLRA 123
Query: 146 NKEMNEFPHLFVGDLKTR 163
KEMN + FVG+ R
Sbjct: 124 LKEMN---NKFVGNRPIR 138
>gi|340505770|gb|EGR32077.1| polyadenylate-binding protein, putative [Ichthyophthirius
multifiliis]
Length = 262
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R W+ + ++D+R+FCG+LGN+VTD++L +F KYPSF KA+VVRDKR+
Sbjct: 132 MRKSAGEVWVDSSMNQWPDSDYRIFCGNLGNEVTDDVLANSFKKYPSFCKARVVRDKRSQ 191
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KT+G+GFVSF DPQDF++A KEM +
Sbjct: 192 KTQGYGFVSFLDPQDFLKALKEMQGKY 218
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 59/69 (85%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + D+R+FCG+LGN+VTD++L +F KYPSF KA+VVRDKR+ KT+G+GFVSF DPQ
Sbjct: 146 NQWPDSDYRIFCGNLGNEVTDDVLANSFKKYPSFCKARVVRDKRSQKTQGYGFVSFLDPQ 205
Query: 141 DFIRANKEM 149
DF++A KEM
Sbjct: 206 DFLKALKEM 214
>gi|226530162|ref|NP_001140428.1| uncharacterized protein LOC100272487 [Zea mays]
gi|194699468|gb|ACF83818.1| unknown [Zea mays]
gi|414590763|tpg|DAA41334.1| TPA: hypothetical protein ZEAMMB73_458862 [Zea mays]
Length = 237
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 115 SWEDPTLTDWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 174
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 175 VSFSNPTDLAAAIKEMNGKY 194
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 127 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 186
Query: 146 NKEMN 150
KEMN
Sbjct: 187 IKEMN 191
>gi|198435964|ref|XP_002131900.1| PREDICTED: similar to SJCHGC03253 protein [Ciona intestinalis]
Length = 418
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 60/79 (75%), Gaps = 2/79 (2%)
Query: 12 WIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T + D ND+R+FCGDLGN+VTD+ L R FS++ SF KAKV+R+K + K+KG+GFV
Sbjct: 305 WEDATLQEWDPNDYRIFCGDLGNEVTDDTLARIFSRFSSFQKAKVIREKGSKKSKGYGFV 364
Query: 70 SFKDPQDFIRANKEMNDDF 88
SFKDP DFIRA +EM +
Sbjct: 365 SFKDPNDFIRAMREMQGKY 383
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+VTD+ L R FS++ SF KAKV+R+K + K+KG+GFVSFKDP DFIRA
Sbjct: 316 NDYRIFCGDLGNEVTDDTLARIFSRFSSFQKAKVIREKGSKKSKGYGFVSFKDPNDFIRA 375
Query: 146 NKEM 149
+EM
Sbjct: 376 MREM 379
>gi|298204769|emb|CBI25267.3| unnamed protein product [Vitis vinifera]
Length = 221
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W T D END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KT+GFGF
Sbjct: 99 TWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTRGFGF 158
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 159 VSFSNPSDLAAALKEMNGKY 178
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KT+GFGFVSF +P D A
Sbjct: 111 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTRGFGFVSFSNPSDLAAA 170
Query: 146 NKEMN 150
KEMN
Sbjct: 171 LKEMN 175
>gi|297833132|ref|XP_002884448.1| hypothetical protein ARALYDRAFT_477706 [Arabidopsis lyrata subsp.
lyrata]
gi|297330288|gb|EFH60707.1| hypothetical protein ARALYDRAFT_477706 [Arabidopsis lyrata subsp.
lyrata]
Length = 245
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + F+++P+F AKV+RDKRT KTKG+GF
Sbjct: 123 SWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFTRFPTFNMAKVIRDKRTGKTKGYGF 182
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 183 VSFSNPADLAAALKEMNGKY 202
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + F+++P+F AKV+RDKRT KTKG+GFVSF +P D A
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFTRFPTFNMAKVIRDKRTGKTKGYGFVSFSNPADLAAA 194
Query: 146 NKEMN 150
KEMN
Sbjct: 195 LKEMN 199
>gi|429327367|gb|AFZ79127.1| hypothetical protein BEWA_019730 [Babesia equi]
Length = 229
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 2 LGLRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 59
+ LR + W T ED +NDFR+FCG LGNDVTDE+L F KYPSF +A+V+RD+
Sbjct: 46 IHLRKAAGTIWNDPTLEDWPKNDFRIFCGHLGNDVTDEILASAFRKYPSFQRARVIRDRN 105
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
+ KTKG+GFVS +P D ++A EMN F
Sbjct: 106 SGKTKGYGFVSLTNPDDMLKALNEMNHKF 134
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 31 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND---- 86
G+ + LL R + + L +++ K KG G + + I + + D
Sbjct: 13 GSAPPNSLLNRVTDEEAALLGSRMAAGK-----KGSGRIHLRKAAGTIWNDPTLEDWPKN 67
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
DFR+FCG LGNDVTDE+L F KYPSF +A+V+RD+ + KTKG+GFVS +P D ++A
Sbjct: 68 DFRIFCGHLGNDVTDEILASAFRKYPSFQRARVIRDRNSGKTKGYGFVSLTNPDDMLKAL 127
Query: 147 KEMNEFPHLFVGD 159
EMN H FVG+
Sbjct: 128 NEMN---HKFVGN 137
>gi|357150232|ref|XP_003575388.1| PREDICTED: uncharacterized protein LOC100836790 [Brachypodium
distachyon]
Length = 239
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KTKG+GF
Sbjct: 117 SWEDPTLADWPENDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKSTGKTKGYGF 176
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + D A KEMN +
Sbjct: 177 VSFANASDLAAALKEMNGKY 196
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KTKG+GFVSF + D A
Sbjct: 129 NDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKSTGKTKGYGFVSFANASDLAAA 188
Query: 146 NKEMN 150
KEMN
Sbjct: 189 LKEMN 193
>gi|326496421|dbj|BAJ94672.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SW T + END+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KTKG+G
Sbjct: 110 QSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 169
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSF +P D A KEMN +
Sbjct: 170 FVSFSNPTDLAAAIKEMNGKY 190
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KTKG+GFVSF +P D A
Sbjct: 123 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 182
Query: 146 NKEMN 150
KEMN
Sbjct: 183 IKEMN 187
>gi|194688256|gb|ACF78212.1| unknown [Zea mays]
gi|195643548|gb|ACG41242.1| hypothetical protein [Zea mays]
gi|414887461|tpg|DAA63475.1| TPA: hypothetical protein ZEAMMB73_038657 [Zea mays]
Length = 237
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 115 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 174
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 175 VSFSNPTDLAAAIKEMNGKY 194
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 127 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 186
Query: 146 NKEMN 150
KEMN
Sbjct: 187 IKEMN 191
>gi|344298247|ref|XP_003420805.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42-like
[Loxodonta africana]
Length = 475
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D+ L R FS++PSFL + V+ DKRT KTKG+G
Sbjct: 362 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDXLARAFSRFPSFL-SXVIXDKRTGKTKGYG 420
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS KDP D++RA +EMN +
Sbjct: 421 FVSSKDPSDYVRAMREMNGKY 441
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D+ L R FS++PSFL + V+ DKRT KTKG+GFVS KDP D++RA
Sbjct: 375 DDFRIFCGDLGNEVNDDXLARAFSRFPSFL-SXVIXDKRTGKTKGYGFVSSKDPSDYVRA 433
Query: 146 NKEMN 150
+EMN
Sbjct: 434 MREMN 438
>gi|449477710|ref|XP_004155100.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101207945
[Cucumis sativus]
Length = 253
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 131 SWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 190
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 191 VSFSNPTDLAGALKEMNGKY 210
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 143 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 202
Query: 146 NKEMN 150
KEMN
Sbjct: 203 LKEMN 207
>gi|413923111|gb|AFW63043.1| hypothetical protein ZEAMMB73_351066 [Zea mays]
Length = 231
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KTKG+GF
Sbjct: 109 SWEDPTLADWPENDFRLFCGDLGNEVNDDVLAKAFSKYPSFNMARVIRDKWTGKTKGYGF 168
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF D D A K+MN +
Sbjct: 169 VSFADASDLTSALKDMNGKY 188
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KTKG+GFVSF D D A
Sbjct: 121 NDFRLFCGDLGNEVNDDVLAKAFSKYPSFNMARVIRDKWTGKTKGYGFVSFADASDLTSA 180
Query: 146 NKEMN 150
K+MN
Sbjct: 181 LKDMN 185
>gi|449470234|ref|XP_004152823.1| PREDICTED: uncharacterized protein LOC101207945 [Cucumis sativus]
Length = 253
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 131 SWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 190
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 191 VSFSNPTDLAGALKEMNGKY 210
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 143 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 202
Query: 146 NKEMN 150
KEMN
Sbjct: 203 LKEMN 207
>gi|320163412|gb|EFW40311.1| RNA recognition domain-containing protein [Capsaspora owczarzaki
ATCC 30864]
Length = 362
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 7/97 (7%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W KT E D++ +R+FCGDLGN+V D+ L F YPSF+KA+VV DKRT+
Sbjct: 224 LRMAAGKVWEDKTLEEWDDSHYRIFCGDLGNEVNDDNLTAAFRIYPSFIKARVVMDKRTS 283
Query: 62 KTKGFGFVSFKDPQDFIRANKEMND-----DFRLFCG 93
KTKG+GFVSFKD D++RA +EM+ R+ CG
Sbjct: 284 KTKGYGFVSFKDADDYVRAMREMDGKGSTAQKRVGCG 320
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
+R+FCGDLGN+V D+ L F YPSF+KA+VV DKRT+KTKG+GFVSFKD D++RA +
Sbjct: 245 YRIFCGDLGNEVNDDNLTAAFRIYPSFIKARVVMDKRTSKTKGYGFVSFKDADDYVRAMR 304
Query: 148 EMN 150
EM+
Sbjct: 305 EMD 307
>gi|301102315|ref|XP_002900245.1| RNA-binding protein, putative [Phytophthora infestans T30-4]
gi|262102397|gb|EEY60449.1| RNA-binding protein, putative [Phytophthora infestans T30-4]
Length = 307
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T E+ +NDFRLFCGDLGN+V+DELL +FS+Y SF +A+VVRDK T+K++G+GFV
Sbjct: 192 WEDPTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFV 251
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF DP D +A +EMN +
Sbjct: 252 SFADPFDCAKALREMNGKY 270
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 56/66 (84%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++DFRLFCGDLGN+V+DELL +FS+Y SF +A+VVRDK T+K++G+GFVSF DP D +
Sbjct: 202 DNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAK 261
Query: 145 ANKEMN 150
A +EMN
Sbjct: 262 ALREMN 267
>gi|255561937|ref|XP_002521977.1| rrm-containing protein, putative [Ricinus communis]
gi|223538781|gb|EEF40381.1| rrm-containing protein, putative [Ricinus communis]
Length = 238
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 116 SWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 175
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 176 VSFCNPSDLAAALKEMNGKY 195
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 128 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFCNPSDLAAA 187
Query: 146 NKEMN 150
KEMN
Sbjct: 188 LKEMN 192
>gi|302755718|ref|XP_002961283.1| hypothetical protein SELMODRAFT_68142 [Selaginella moellendorffii]
gi|300172222|gb|EFJ38822.1| hypothetical protein SELMODRAFT_68142 [Selaginella moellendorffii]
Length = 155
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 5 RPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
R SW T D ENDFRLFCGDLGN+V DE+L + F+++PSF A+VVRDKRT K
Sbjct: 43 RKAAGQSWEDSTLGDWPENDFRLFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGK 102
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDF 88
TKG+GFVSF D A KEMN F
Sbjct: 103 TKGYGFVSFSSAADLAFAMKEMNGKF 128
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 4/82 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V DE+L + F+++PSF A+VVRDKRT KTKG+GFVSF D A
Sbjct: 61 NDFRLFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGKTKGYGFVSFSSAADLAFA 120
Query: 146 NKEMNEFPHLFVGD--LKTRSS 165
KEMN +VG+ +K R S
Sbjct: 121 MKEMN--GKFYVGNRPIKLRKS 140
>gi|302803041|ref|XP_002983274.1| hypothetical protein SELMODRAFT_118067 [Selaginella moellendorffii]
gi|300148959|gb|EFJ15616.1| hypothetical protein SELMODRAFT_118067 [Selaginella moellendorffii]
Length = 170
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 5 RPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
R SW T D ENDFRLFCGDLGN+V DE+L + F+++PSF A+VVRDKRT K
Sbjct: 43 RKAAGQSWEDSTLGDWPENDFRLFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGK 102
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDF 88
TKG+GFVSF D A KEMN F
Sbjct: 103 TKGYGFVSFSSAADLAFAMKEMNGKF 128
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 4/82 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V DE+L + F+++PSF A+VVRDKRT KTKG+GFVSF D A
Sbjct: 61 NDFRLFCGDLGNEVNDEVLTKAFTRFPSFNMARVVRDKRTGKTKGYGFVSFSSAADLAFA 120
Query: 146 NKEMNEFPHLFVGD--LKTRSS 165
KEMN +VG+ +K R S
Sbjct: 121 MKEMN--GKFYVGNRPIKLRKS 140
>gi|302143626|emb|CBI22379.3| unnamed protein product [Vitis vinifera]
Length = 222
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
END+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KT+G+GFVSF +P D
Sbjct: 111 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAA 170
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 171 ALKEMNGKY 179
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KT+G+GFVSF +P D A
Sbjct: 112 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAAA 171
Query: 146 NKEMN 150
KEMN
Sbjct: 172 LKEMN 176
>gi|115477903|ref|NP_001062547.1| Os08g0567200 [Oryza sativa Japonica Group]
gi|42409101|dbj|BAD10352.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|46804978|dbj|BAD17833.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113624516|dbj|BAF24461.1| Os08g0567200 [Oryza sativa Japonica Group]
gi|218201630|gb|EEC84057.1| hypothetical protein OsI_30332 [Oryza sativa Indica Group]
gi|222641035|gb|EEE69167.1| hypothetical protein OsJ_28330 [Oryza sativa Japonica Group]
Length = 235
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D +ND+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GF
Sbjct: 113 SWEDPTLTDWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGF 172
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 173 VSFSNPTDLAGAIKEMNGKY 192
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D
Sbjct: 124 DNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAG 183
Query: 145 ANKEMN 150
A KEMN
Sbjct: 184 AIKEMN 189
>gi|359488053|ref|XP_002266454.2| PREDICTED: uncharacterized protein LOC100246648 [Vitis vinifera]
Length = 257
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
END+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KT+G+GFVSF +P D
Sbjct: 146 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAA 205
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 206 ALKEMNGKY 214
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KT+G+GFVSF +P D A
Sbjct: 147 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFVSFSNPLDLAAA 206
Query: 146 NKEMN 150
KEMN
Sbjct: 207 LKEMN 211
>gi|428178283|gb|EKX47159.1| hypothetical protein GUITHDRAFT_137752 [Guillardia theta CCMP2712]
Length = 266
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 52/65 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+R+FCG+LGN+V D L R+F KY SF KAKVVRD RT+K+KG+GFVSF DP DF RA
Sbjct: 148 DDYRMFCGNLGNEVDDSTLARSFGKYSSFQKAKVVRDGRTSKSKGYGFVSFADPADFTRA 207
Query: 146 NKEMN 150
KEM
Sbjct: 208 MKEMQ 212
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++D+R+FCG+LGN+V D L R+F KY SF KAKVVRD RT+K+KG+GFVSF DP DF R
Sbjct: 147 KDDYRMFCGNLGNEVDDSTLARSFGKYSSFQKAKVVRDGRTSKSKGYGFVSFADPADFTR 206
Query: 80 ANKEMNDDF 88
A KEM +
Sbjct: 207 AMKEMQGKY 215
>gi|221129985|ref|XP_002167334.1| PREDICTED: uncharacterized protein LOC100199104 [Hydra
magnipapillata]
Length = 261
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+F GDLGN+V+D+ L+R FSKYPS L+AK+VRDK+T KTKG+GFVSFKDPQD++
Sbjct: 158 DPNDFRIFVGDLGNEVSDDALLRAFSKYPSLLRAKIVRDKKTKKTKGYGFVSFKDPQDYL 217
Query: 79 RANKEMNDDF 88
+A +EMN +
Sbjct: 218 KAMREMNGKY 227
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GDLGN+V+D+ L+R FSKYPS L+AK+VRDK+T KTKG+GFVSFKDPQD+++A
Sbjct: 160 NDFRIFVGDLGNEVSDDALLRAFSKYPSLLRAKIVRDKKTKKTKGYGFVSFKDPQDYLKA 219
Query: 146 NKEMN 150
+EMN
Sbjct: 220 MREMN 224
>gi|15229308|ref|NP_187100.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7547109|gb|AAF63781.1| unknown protein [Arabidopsis thaliana]
gi|26451670|dbj|BAC42931.1| unknown protein [Arabidopsis thaliana]
gi|28973333|gb|AAO63991.1| putative RRM-containing protein [Arabidopsis thaliana]
gi|332640568|gb|AEE74089.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 245
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + F+++P+F AKV+RDKRT KTKG+GF
Sbjct: 123 SWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGF 182
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 183 VSFLNPADLAAALKEMNGKY 202
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLFCGDLGN+V D++L + F+++P+F AKV+RDKRT KTKG+GFVSF +P D A
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 146 NKEMN 150
KEMN
Sbjct: 195 LKEMN 199
>gi|66361976|ref|XP_627952.1| RRM domain protein [Cryptosporidium parvum Iowa II]
gi|46227645|gb|EAK88580.1| RRM domain protein [Cryptosporidium parvum Iowa II]
Length = 164
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
R W+ T ++ ENDFRLFCGDLGNDVT+E+L F KY SF K KV+R+K T
Sbjct: 20 FRKAAGQVWVDNTLDEWPENDFRLFCGDLGNDVTEEILANAFKKYASFEKCKVIRNKHTG 79
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
K++G+GFVSF +P D + A KEMN
Sbjct: 80 KSRGYGFVSFTNPNDMLNAMKEMN 103
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGNDVT+E+L F KY SF K KV+R+K T K++G+GFVSF +P D + A
Sbjct: 39 NDFRLFCGDLGNDVTEEILANAFKKYASFEKCKVIRNKHTGKSRGYGFVSFTNPNDMLNA 98
Query: 146 NKEMN 150
KEMN
Sbjct: 99 MKEMN 103
>gi|357144285|ref|XP_003573237.1| PREDICTED: uncharacterized protein LOC100845208 [Brachypodium
distachyon]
Length = 233
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SW T + +ND+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KTKG+G
Sbjct: 110 QSWEDPTLTEWPDNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 169
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSF +P D A KEMN +
Sbjct: 170 FVSFSNPTDLAAAIKEMNGKY 190
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 54/66 (81%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++D+RLFCGDLGN+V D++L + FS++PSF AKVVRDKRT KTKG+GFVSF +P D
Sbjct: 122 DNDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 181
Query: 145 ANKEMN 150
A KEMN
Sbjct: 182 AIKEMN 187
>gi|67594801|ref|XP_665890.1| RNA recognition motif [Cryptosporidium hominis TU502]
gi|54656752|gb|EAL35659.1| RNA recognition motif [Cryptosporidium hominis]
Length = 163
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
R W+ T ++ ENDFRLFCGDLGNDVT+E+L F KY SF K KV+R+K T
Sbjct: 19 FRKAAGQVWVDNTLDEWPENDFRLFCGDLGNDVTEEILANAFKKYASFEKCKVIRNKHTG 78
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
K++G+GFVSF +P D + A KEMN
Sbjct: 79 KSRGYGFVSFTNPNDMLSAMKEMN 102
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGNDVT+E+L F KY SF K KV+R+K T K++G+GFVSF +P D + A
Sbjct: 38 NDFRLFCGDLGNDVTEEILANAFKKYASFEKCKVIRNKHTGKSRGYGFVSFTNPNDMLSA 97
Query: 146 NKEMN 150
KEMN
Sbjct: 98 MKEMN 102
>gi|302829639|ref|XP_002946386.1| hypothetical protein VOLCADRAFT_72703 [Volvox carteri f.
nagariensis]
gi|300268132|gb|EFJ52313.1| hypothetical protein VOLCADRAFT_72703 [Volvox carteri f.
nagariensis]
Length = 291
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W+ T + +NDFR+F GD+GN+VTD+LL ++FSKY SF KAKVVRD RT
Sbjct: 168 LREAGGQKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTK 227
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D DF +A +EMN +
Sbjct: 228 KSKGYGFVSFLDGNDFAKALREMNGKY 254
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ ++DFR+F GD+GN+VTD+LL ++FSKY SF KAKVVRD RT K+KG+GFVSF D
Sbjct: 182 NEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTKKSKGYGFVSFLDGN 241
Query: 141 DFIRANKEMN 150
DF +A +EMN
Sbjct: 242 DFAKALREMN 251
>gi|159487497|ref|XP_001701759.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280978|gb|EDP06734.1| predicted protein [Chlamydomonas reinhardtii]
Length = 107
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W+ T + +NDFR+F GD+GN+VTD+LL ++FSKY SF KAK+VRD RT
Sbjct: 5 LRGAGGEKWVDPTLNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKIVRDPRTK 64
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D QDF +A +EMN +
Sbjct: 65 KSKGYGFVSFLDGQDFAKALREMNGKY 91
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 4/87 (4%)
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
+G G + DP N+ ++DFR+F GD+GN+VTD+LL ++FSKY SF KAK+VRD
Sbjct: 6 RGAGGEKWVDPT----LNEWPDNDFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKIVRDP 61
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEMN 150
RT K+KG+GFVSF D QDF +A +EMN
Sbjct: 62 RTKKSKGYGFVSFLDGQDFAKALREMN 88
>gi|125540346|gb|EAY86741.1| hypothetical protein OsI_08123 [Oryza sativa Indica Group]
Length = 234
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+GF
Sbjct: 112 SWEDPTLADWPENDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYGF 171
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + D A KEMN +
Sbjct: 172 VSFANASDLAAALKEMNGKY 191
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+GFVSF + D A
Sbjct: 124 NDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYGFVSFANASDLAAA 183
Query: 146 NKEMN 150
KEMN
Sbjct: 184 LKEMN 188
>gi|356538652|ref|XP_003537815.1| PREDICTED: RNA-binding protein 42-like [Glycine max]
Length = 246
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D
Sbjct: 135 EDDYRLFCGDLGNEVNDDVLSKVFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPADLAA 194
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 195 AVKEMNGKY 203
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 136 DDYRLFCGDLGNEVNDDVLSKVFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPADLAAA 195
Query: 146 NKEMN 150
KEMN
Sbjct: 196 VKEMN 200
>gi|356576674|ref|XP_003556455.1| PREDICTED: RNA-binding protein 42-like [Glycine max]
Length = 247
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D
Sbjct: 136 EDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAA 195
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 196 ALKEMNGKY 204
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 137 DDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAA 196
Query: 146 NKEMN 150
KEMN
Sbjct: 197 LKEMN 201
>gi|313244017|emb|CBY14887.1| unnamed protein product [Oikopleura dioica]
Length = 327
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 60/72 (83%), Gaps = 2/72 (2%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK--RTNKTKGFGFVSFKDPQD 76
D D+R+F GDLGN+VTD++L R F+KYPSF+KAKV+R+K + K+KG+GF+SF+DP+D
Sbjct: 221 DAADYRIFAGDLGNEVTDDVLSRAFNKYPSFMKAKVIREKGPKMGKSKGYGFISFRDPED 280
Query: 77 FIRANKEMNDDF 88
FI+A +EMN +
Sbjct: 281 FIKAMREMNGKY 292
Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 58/66 (87%), Gaps = 2/66 (3%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK--RTNKTKGFGFVSFKDPQDFIR 144
D+R+F GDLGN+VTD++L R F+KYPSF+KAKV+R+K + K+KG+GF+SF+DP+DFI+
Sbjct: 224 DYRIFAGDLGNEVTDDVLSRAFNKYPSFMKAKVIREKGPKMGKSKGYGFISFRDPEDFIK 283
Query: 145 ANKEMN 150
A +EMN
Sbjct: 284 AMREMN 289
>gi|328870475|gb|EGG18849.1| ssRNA-binding protein [Dictyostelium fasciculatum]
Length = 316
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 6/80 (7%)
Query: 9 ISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+S W + ND+RLF G LGN+VTDE+L + F++YPSF KAKV+R+K++ KTKGFGF
Sbjct: 187 LSEW------NSNDYRLFVGQLGNEVTDEMLGQAFARYPSFEKAKVIREKKSQKTKGFGF 240
Query: 69 VSFKDPQDFIRANKEMNDDF 88
V+F D+I+A KEMN +
Sbjct: 241 VAFTSAADYIKAYKEMNGKY 260
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 77/115 (66%), Gaps = 14/115 (12%)
Query: 45 KYPSFLKAKVVRDK---------RTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDL 95
K PS++ ++V+R+K + T G G +++D ++ ++D+RLF G L
Sbjct: 148 KLPSYV-SQVMREKPMVTMEEPKKLKYTMGLGNDTWED----ATLSEWNSNDYRLFVGQL 202
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
GN+VTDE+L + F++YPSF KAKV+R+K++ KTKGFGFV+F D+I+A KEMN
Sbjct: 203 GNEVTDEMLGQAFARYPSFEKAKVIREKKSQKTKGFGFVAFTSAADYIKAYKEMN 257
>gi|356535208|ref|XP_003536140.1| PREDICTED: RNA-binding protein 42-like [Glycine max]
Length = 248
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+D+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D
Sbjct: 137 EDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAG 196
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 197 ALKEMNGKY 205
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+RLFCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 138 DDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFANPSDLAGA 197
Query: 146 NKEMN 150
KEMN
Sbjct: 198 LKEMN 202
>gi|167522409|ref|XP_001745542.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775891|gb|EDQ89513.1| predicted protein [Monosiga brevicollis MX1]
Length = 218
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 56/70 (80%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D ND+R+FCGDLGN+ +DE+L + F YPSF KAKV++DK + KTKG+GFVSFK+ +D++
Sbjct: 120 DPNDYRIFCGDLGNETSDEVLAKAFKHYPSFQKAKVIKDKASGKTKGYGFVSFKEGRDYL 179
Query: 79 RANKEMNDDF 88
+A KEM +
Sbjct: 180 KALKEMQGKY 189
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 54/65 (83%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+ +DE+L + F YPSF KAKV++DK + KTKG+GFVSFK+ +D+++A
Sbjct: 122 NDYRIFCGDLGNETSDEVLAKAFKHYPSFQKAKVIKDKASGKTKGYGFVSFKEGRDYLKA 181
Query: 146 NKEMN 150
KEM
Sbjct: 182 LKEMQ 186
>gi|325183330|emb|CCA17788.1| RNAbinding protein putative [Albugo laibachii Nc14]
Length = 306
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+NDFRLFCGDLGN+VTDELL FS +PSF +AKV+RDK T+K++G+GFVSF DP D +
Sbjct: 201 DNDFRLFCGDLGNEVTDELLAHNFSCFPSFQRAKVIRDKFTHKSRGYGFVSFGDPFDCAK 260
Query: 80 ANKEMNDDF 88
A +EMN +
Sbjct: 261 ALREMNGKY 269
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 55/66 (83%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++DFRLFCGDLGN+VTDELL FS +PSF +AKV+RDK T+K++G+GFVSF DP D +
Sbjct: 201 DNDFRLFCGDLGNEVTDELLAHNFSCFPSFQRAKVIRDKFTHKSRGYGFVSFGDPFDCAK 260
Query: 145 ANKEMN 150
A +EMN
Sbjct: 261 ALREMN 266
>gi|224144577|ref|XP_002325337.1| predicted protein [Populus trichocarpa]
gi|222862212|gb|EEE99718.1| predicted protein [Populus trichocarpa]
Length = 178
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
END+R+FCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D
Sbjct: 67 ENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPTDLAA 126
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 127 ALKEMNGKY 135
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+V D++L + FS++PSF A+VVRDKRT KTKG+GFVSF +P D A
Sbjct: 68 NDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPTDLAAA 127
Query: 146 NKEMN 150
KEMN
Sbjct: 128 LKEMN 132
>gi|358056516|dbj|GAA97485.1| hypothetical protein E5Q_04163 [Mixia osmundae IAM 14324]
Length = 261
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSK---YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
D FRLF GDLGNDV DE L+++F K YPSF+KAKVVRDK T KTKGFGFVS+ DP
Sbjct: 127 DPAHFRLFIGDLGNDVNDETLLKSFGKEAGYPSFVKAKVVRDKTTMKTKGFGFVSYSDPD 186
Query: 76 DFIRANKEMNDDF 88
DF++A K MN +
Sbjct: 187 DFLKAWKTMNGKY 199
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 53/66 (80%), Gaps = 3/66 (4%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSK---YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
FRLF GDLGNDV DE L+++F K YPSF+KAKVVRDK T KTKGFGFVS+ DP DF++
Sbjct: 131 FRLFIGDLGNDVNDETLLKSFGKEAGYPSFVKAKVVRDKTTMKTKGFGFVSYSDPDDFLK 190
Query: 145 ANKEMN 150
A K MN
Sbjct: 191 AWKTMN 196
>gi|224123552|ref|XP_002319108.1| predicted protein [Populus trichocarpa]
gi|222857484|gb|EEE95031.1| predicted protein [Populus trichocarpa]
Length = 222
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W T + END+R+FCGDLGN+V D++L + FS++PSF A+VVRDKR+ KTKG+GF
Sbjct: 100 TWEDPTLAEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRSGKTKGYGF 159
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 160 VSFANPTDLAAALKEMNGKY 179
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+V D++L + FS++PSF A+VVRDKR+ KTKG+GFVSF +P D A
Sbjct: 112 NDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRSGKTKGYGFVSFANPTDLAAA 171
Query: 146 NKEMN 150
KEMN
Sbjct: 172 LKEMN 176
>gi|296803883|ref|XP_002842794.1| RNP domain-containing protein [Arthroderma otae CBS 113480]
gi|238846144|gb|EEQ35806.1| RNP domain-containing protein [Arthroderma otae CBS 113480]
Length = 421
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G +W T D FRLFCG+L +VTDE L++ FSKYPS KA+V+RDKRT
Sbjct: 262 LRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDESLLKAFSKYPSVQKARVIRDKRTE 321
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 322 KSKGYGFVSFSDGDDYFKAAREMQGKY 348
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTDE L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 283 FRLFCGNLAGEVTDESLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 342
Query: 148 EMN 150
EM
Sbjct: 343 EMQ 345
>gi|326502144|dbj|BAK06564.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 238
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 52/69 (75%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFRLFCGDLGN+V D+LL + FSKYPSF A+V+RDK + KTKG+GF SF + D
Sbjct: 127 ENDFRLFCGDLGNEVNDDLLTKAFSKYPSFNMARVIRDKSSGKTKGYGFASFANASDLAA 186
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 187 ALKEMNGKY 195
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D+LL + FSKYPSF A+V+RDK + KTKG+GF SF + D A
Sbjct: 128 NDFRLFCGDLGNEVNDDLLTKAFSKYPSFNMARVIRDKSSGKTKGYGFASFANASDLAAA 187
Query: 146 NKEMN 150
KEMN
Sbjct: 188 LKEMN 192
>gi|125582928|gb|EAZ23859.1| hypothetical protein OsJ_07575 [Oryza sativa Japonica Group]
Length = 234
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T D ENDFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+ F
Sbjct: 112 SWEDPTLADWPENDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAF 171
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + D A KEMN +
Sbjct: 172 VSFANASDLAAALKEMNGKY 191
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+ FVSF + D A
Sbjct: 124 NDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 183
Query: 146 NKEMN 150
KEMN
Sbjct: 184 LKEMN 188
>gi|303311987|ref|XP_003066005.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240105667|gb|EER23860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 424
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 267 MRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 326
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 327 KSKGYGFVSFSDGEDYFRAAREMQGKY 353
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 288 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 347
Query: 148 EMN 150
EM
Sbjct: 348 EMQ 350
>gi|71030376|ref|XP_764830.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351786|gb|EAN32547.1| hypothetical protein, conserved [Theileria parva]
Length = 226
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Query: 2 LGLRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 59
+ LR W T ED +ND+R+FCGDLGN+VTDE+L F +YPSF +A+V+RDK
Sbjct: 43 VHLRKAAGIVWNDPTLEDWPKNDYRIFCGDLGNEVTDEILANAFKRYPSFQRARVIRDKN 102
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
+ K++G+GFVS +P + + A KEMN F
Sbjct: 103 SGKSRGYGFVSLLNPNEMLTALKEMNHAF 131
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 3/78 (3%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+VTDE+L F +YPSF +A+V+RDK + K++G+GFVS +P + + A
Sbjct: 64 NDYRIFCGDLGNEVTDEILANAFKRYPSFQRARVIRDKNSGKSRGYGFVSLLNPNEMLTA 123
Query: 146 NKEMNEFPHLFVGDLKTR 163
KEMN H FVG+ R
Sbjct: 124 LKEMN---HAFVGNRPIR 138
>gi|168040752|ref|XP_001772857.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675768|gb|EDQ62259.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 179
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
END RLFCGDLGN+V DE+L + F+++ SF A+VVRDKRT KTKGFGFVSF +P D
Sbjct: 70 ENDHRLFCGDLGNEVNDEVLTKAFTRFSSFNMARVVRDKRTGKTKGFGFVSFANPSDLAL 129
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 130 ALKEMNGKY 138
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D RLFCGDLGN+V DE+L + F+++ SF A+VVRDKRT KTKGFGFVSF +P D A
Sbjct: 71 NDHRLFCGDLGNEVNDEVLTKAFTRFSSFNMARVVRDKRTGKTKGFGFVSFANPSDLALA 130
Query: 146 NKEMN 150
KEMN
Sbjct: 131 LKEMN 135
>gi|119193550|ref|XP_001247381.1| hypothetical protein CIMG_01152 [Coccidioides immitis RS]
gi|392863377|gb|EAS35881.2| RNA-binding protein [Coccidioides immitis RS]
Length = 252
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 95 MRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 154
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 155 KSKGYGFVSFSDGEDYFRAAREMQGKY 181
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 116 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 175
Query: 148 EMN 150
EM
Sbjct: 176 EMQ 178
>gi|84995464|ref|XP_952454.1| RNA binding protein [Theileria annulata strain Ankara]
gi|65302615|emb|CAI74722.1| RNA binding protein, putative [Theileria annulata]
Length = 226
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T ED +ND+R+FCGDLGN+VTDE+L +F +YPSF +A+V+RDK + K++G+GFV
Sbjct: 53 WNDPTLEDWPKNDYRIFCGDLGNEVTDEILANSFKRYPSFQRARVIRDKNSGKSRGYGFV 112
Query: 70 SFKDPQDFIRANKEMNDDF 88
S +P + + A KEMN F
Sbjct: 113 SLLNPNEMLTALKEMNHAF 131
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+FCGDLGN+VTDE+L +F +YPSF +A+V+RDK + K++G+GFVS +P + + A
Sbjct: 64 NDYRIFCGDLGNEVTDEILANSFKRYPSFQRARVIRDKNSGKSRGYGFVSLLNPNEMLTA 123
Query: 146 NKEMNEFPHLFVGDLKTR 163
KEMN H FVG+ R
Sbjct: 124 LKEMN---HAFVGNRPIR 138
>gi|320039969|gb|EFW21903.1| RNA-binding protein [Coccidioides posadasii str. Silveira]
Length = 252
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 95 MRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 154
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 155 KSKGYGFVSFSDGEDYFRAAREMQGKY 181
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 51/63 (80%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 116 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 175
Query: 148 EMN 150
EM
Sbjct: 176 EMQ 178
>gi|357441373|ref|XP_003590964.1| RNA-binding protein [Medicago truncatula]
gi|355480012|gb|AES61215.1| RNA-binding protein [Medicago truncatula]
Length = 240
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+D+RLFCGDLGN+V D++L + F+++PSF A+VVRDKRT KTKG+GF+SF +P D
Sbjct: 129 EDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAA 188
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 189 ALKEMNGKY 197
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+RLFCGDLGN+V D++L + F+++PSF A+VVRDKRT KTKG+GF+SF +P D A
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 146 NKEMN 150
KEMN
Sbjct: 190 LKEMN 194
>gi|327354221|gb|EGE83078.1| RNP domain-containing protein [Ajellomyces dermatitidis ATCC 18188]
Length = 444
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 273 LRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 332
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 333 KSKGYGFVSFSDGEDYFRAAREMQGKY 359
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 294 FRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 353
Query: 148 EMN 150
EM
Sbjct: 354 EMQ 356
>gi|239615598|gb|EEQ92585.1| RNP domain-containing protein [Ajellomyces dermatitidis ER-3]
Length = 441
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 273 LRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 332
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 333 KSKGYGFVSFSDGEDYFRAAREMQGKY 359
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 294 FRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 353
Query: 148 EMN 150
EM
Sbjct: 354 EMQ 356
>gi|145495161|ref|XP_001433574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400692|emb|CAK66177.1| unnamed protein product [Paramecium tetraurelia]
Length = 198
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 1 MLGLRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58
M+ LR W T D + D+RLFCG+LGN+V+DE+L +F KYPSF +++V+RDK
Sbjct: 65 MIILRKCAGDIWEDPTLADWPDGDYRLFCGNLGNEVSDEVLANSFRKYPSFARSRVIRDK 124
Query: 59 RTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
RT KT+G+GFVSF + D+++A KEMN +
Sbjct: 125 RTMKTRGYGFVSFLNANDYLKAFKEMNGKY 154
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 55/64 (85%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
D+RLFCG+LGN+V+DE+L +F KYPSF +++V+RDKRT KT+G+GFVSF + D+++A
Sbjct: 88 DYRLFCGNLGNEVSDEVLANSFRKYPSFARSRVIRDKRTMKTRGYGFVSFLNANDYLKAF 147
Query: 147 KEMN 150
KEMN
Sbjct: 148 KEMN 151
>gi|261199634|ref|XP_002626218.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
gi|239594426|gb|EEQ77007.1| RNP domain-containing protein [Ajellomyces dermatitidis SLH14081]
Length = 444
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 273 LRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 332
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 333 KSKGYGFVSFSDGEDYFRAAREMQGKY 359
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 294 FRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 353
Query: 148 EMN 150
EM
Sbjct: 354 EMQ 356
>gi|302503681|ref|XP_003013800.1| RNP domain protein [Arthroderma benhamiae CBS 112371]
gi|291177366|gb|EFE33160.1| RNP domain protein [Arthroderma benhamiae CBS 112371]
Length = 692
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 451 VRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 510
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 511 KSKGYGFVSFSDGDDYFKAAREMQGKY 537
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 472 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 531
Query: 148 EM 149
EM
Sbjct: 532 EM 533
>gi|258574779|ref|XP_002541571.1| potential RNA binding protein [Uncinocarpus reesii 1704]
gi|237901837|gb|EEP76238.1| potential RNA binding protein [Uncinocarpus reesii 1704]
Length = 414
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+VVRDKRT
Sbjct: 258 VRSGGGQTWTDPTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVVRDKRTE 317
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ RA +EM +
Sbjct: 318 KSKGYGFVSFSDGDDYFRAAREMQGKY 344
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+VVRDKRT K+KG+GFVSF D D+ RA +
Sbjct: 279 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVVRDKRTEKSKGYGFVSFSDGDDYFRAAR 338
Query: 148 EMN 150
EM
Sbjct: 339 EMQ 341
>gi|295673548|ref|XP_002797320.1| RNP domain-containing protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282692|gb|EEH38258.1| RNP domain-containing protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 519
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 348 IRSGGGQSWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 407
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 408 KSKGYGFVSFSDGEDYFRAAREMQGKY 434
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 50/62 (80%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 369 FRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 428
Query: 148 EM 149
EM
Sbjct: 429 EM 430
>gi|340914672|gb|EGS18013.1| hypothetical protein CTHT_0060260 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 397
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + FRLF G+L + TDE L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP DF
Sbjct: 247 DPSHFRLFVGNLAGETTDESLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPDDFF 306
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 307 QAAKEMNGKY 316
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L + TDE L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP DF +A K
Sbjct: 251 FRLFVGNLAGETTDESLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPDDFFQAAK 310
Query: 148 EMN 150
EMN
Sbjct: 311 EMN 313
>gi|388517967|gb|AFK47045.1| unknown [Medicago truncatula]
Length = 247
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+D+RLFCGDLGN+V D++L + F+++PSF A+VVRDKRT KTKG+GF+SF +P D
Sbjct: 129 EDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAA 188
Query: 80 ANKEMNDDF 88
A KEMN +
Sbjct: 189 AFKEMNGKY 197
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 53/65 (81%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD+RLFCGDLGN+V D++L + F+++PSF A+VVRDKRT KTKG+GF+SF +P D A
Sbjct: 130 DDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 146 NKEMN 150
KEMN
Sbjct: 190 FKEMN 194
>gi|156101383|ref|XP_001616385.1| RNA-binding protein [Plasmodium vivax Sal-1]
gi|148805259|gb|EDL46658.1| RNA-binding protein, putative [Plasmodium vivax]
Length = 181
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W + +D ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR N
Sbjct: 29 LRKAAGVVWKDSSLDDWPENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNN 88
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVS DPQD + A K MN+ F
Sbjct: 89 KTKGYGFVSLSDPQDMLDALKNMNNKF 115
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD + A
Sbjct: 48 NDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLDA 107
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 108 LKNMN---NKFIGN 118
>gi|124513912|ref|XP_001350312.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23615729|emb|CAD52721.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 180
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/87 (54%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W T ++ ENDFR+FCG+LGN+V+ ++L F KY SF AKV+RDKR N
Sbjct: 29 LRKAAGIVWKDPTLDEWPENDFRIFCGNLGNEVSSDILANAFRKYKSFNMAKVIRDKRNN 88
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVS DPQD + A K MN+ F
Sbjct: 89 KTKGYGFVSLSDPQDMLDALKTMNNKF 115
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+V+ ++L F KY SF AKV+RDKR NKTKG+GFVS DPQD + A
Sbjct: 48 NDFRIFCGNLGNEVSSDILANAFRKYKSFNMAKVIRDKRNNKTKGYGFVSLSDPQDMLDA 107
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 108 LKTMN---NKFIGN 118
>gi|146413072|ref|XP_001482507.1| hypothetical protein PGUG_05527 [Meyerozyma guilliermondii ATCC
6260]
gi|146393271|gb|EDK41429.1| hypothetical protein PGUG_05527 [Meyerozyma guilliermondii ATCC
6260]
Length = 196
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D N FRLF G+LG D D+LL+ F KYPSF+KA+V RDKRT+K KG+GFV+F +D++
Sbjct: 107 DPNHFRLFVGNLGPDANDQLLVEAFEKYPSFVKARVPRDKRTDKNKGYGFVAFSSAEDYL 166
Query: 79 RANKEMNDDF 88
RA KEMN +
Sbjct: 167 RAFKEMNGKY 176
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+ FRLF G+LG D D+LL+ F KYPSF+KA+V RDKRT+K KG+GFV+F +D++RA
Sbjct: 109 NHFRLFVGNLGPDANDQLLVEAFEKYPSFVKARVPRDKRTDKNKGYGFVAFSSAEDYLRA 168
Query: 146 NKEMN 150
KEMN
Sbjct: 169 FKEMN 173
>gi|225557492|gb|EEH05778.1| RNP domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 446
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 278 VRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 337
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 338 KSKGYGFVSFSDGEDYFRAAREMQGKY 364
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 299 FRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 358
Query: 148 EMN 150
EM
Sbjct: 359 EMQ 361
>gi|326481515|gb|EGE05525.1| RNP domain-containing protein [Trichophyton equinum CBS 127.97]
Length = 428
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 267 VRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 326
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 327 KSKGYGFVSFSDGDDYFKAAREMQGKY 353
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 288 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 347
Query: 148 EMN 150
EM
Sbjct: 348 EMQ 350
>gi|154274854|ref|XP_001538278.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414718|gb|EDN10080.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 446
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 278 VRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 337
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 338 KSKGYGFVSFSDGEDYFRAAREMQGKY 364
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 299 FRLFAGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 358
Query: 148 EMN 150
EM
Sbjct: 359 EMQ 361
>gi|15221071|ref|NP_172630.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75336898|sp|Q9SAB3.1|RB45B_ARATH RecName: Full=Polyadenylate-binding protein RBP45B;
Short=Poly(A)-binding protein RBP45B; AltName:
Full=RNA-binding protein 45B; Short=AtRBP45B
gi|4835793|gb|AAD30259.1|AC007296_20 Similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains. ESTs gb|T44278, gb|R65195, gb|N65904,
gb|H37499, gb|R90487, gb|N95952, gb|T44278, gb|Z20166,
gb|N96891, gb|W43137, gb|F15504, gb|F15495 and gb|Z30868
come from this gene [Arabidopsis thaliana]
gi|20260604|gb|AAM13200.1| similar to gb|U90212 DNA binding protein ACBF from Nicotiana
tabacum and contains 3 PF|00076 RNA recognition motif
domains [Arabidopsis thaliana]
gi|30725662|gb|AAP37853.1| At1g11650 [Arabidopsis thaliana]
gi|332190643|gb|AEE28764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 405
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 1 MLGLRPGPISSW---------IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51
+ G P P W ++ T DE L+ GDL + + L F+ +
Sbjct: 32 IAGAAPPPPQMWNPQAAAPPSVQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVS 90
Query: 52 AKVVRDKRTNKTKGFGFVSFKD-------------------PQDFIRAN---------KE 83
AKV+R+K+T + +G+GF+ F P R N ++
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
+ D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 143 IRANKEMNEFP----HLFVGDLKTRSSIT 167
IRA EMN P + +G ++ +T
Sbjct: 211 IRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
>gi|326474449|gb|EGD98458.1| hypothetical protein TESG_08545 [Trichophyton tonsurans CBS 112818]
Length = 428
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 267 VRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 326
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 327 KSKGYGFVSFSDGDDYFKAAREMQGKY 353
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 288 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 347
Query: 148 EMN 150
EM
Sbjct: 348 EMQ 350
>gi|30682335|ref|NP_849641.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332190644|gb|AEE28765.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 306
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 1 MLGLRPGPISSW---------IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51
+ G P P W ++ T DE L+ GDL + + L F+ +
Sbjct: 32 IAGAAPPPPQMWNPQAAAPPSVQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVS 90
Query: 52 AKVVRDKRTNKTKGFGFVSFKD-------------------PQDFIRAN---------KE 83
AKV+R+K+T + +G+GF+ F P R N ++
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
+ D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 143 IRANKEMNEFP----HLFVGDLKTRSSIT 167
IRA EMN P + +G ++ +T
Sbjct: 211 IRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
>gi|226292140|gb|EEH47560.1| RNP domain-containing protein [Paracoccidioides brasiliensis Pb18]
Length = 442
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 271 IRSGGGQSWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 330
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 331 KSKGYGFVSFSDGEDYFRAAREMQGKY 357
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA
Sbjct: 291 HFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAA 350
Query: 147 KEMN 150
+EM
Sbjct: 351 REMQ 354
>gi|227204263|dbj|BAH56983.1| AT1G11650 [Arabidopsis thaliana]
Length = 271
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 1 MLGLRPGPISSW---------IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51
+ G P P W ++ T DE L+ GDL + + L F+ +
Sbjct: 32 IAGAAPPPPQMWNPQAAAPPSVQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVS 90
Query: 52 AKVVRDKRTNKTKGFGFVSFKD-------------------PQDFIRAN---------KE 83
AKV+R+K+T + +G+GF+ F P R N ++
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
+ D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 143 IRANKEMNEFP----HLFVGDLKTRSSIT 167
IRA EMN P + +G ++ +T
Sbjct: 211 IRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
>gi|225681154|gb|EEH19438.1| RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 442
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 271 IRSGGGQSWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 330
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 331 KSKGYGFVSFSDGEDYFRAAREMQGKY 357
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D +D+ RA
Sbjct: 291 HFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGEDYFRAA 350
Query: 147 KEMN 150
+EM
Sbjct: 351 REMQ 354
>gi|156085052|ref|XP_001610009.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
gi|154797261|gb|EDO06441.1| RNA recognition motif (RRM)-containing protein [Babesia bovis]
Length = 224
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 2 LGLRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 59
+ LR + W T +D +NDFR+FCGDLGN+VTD+ L F KYPSF +A+V+RD+
Sbjct: 41 IHLRKAAGNVWNDPTLDDWPQNDFRIFCGDLGNEVTDDTLANAFKKYPSFQRARVIRDRV 100
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
+ K+KG+GFVS P D + A EMN+ F
Sbjct: 101 SGKSKGYGFVSMLSPDDMLAALNEMNNKF 129
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 51 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFRLFCGDLGNDVTDELLIR 106
+A V + TKG G + + + + ++D DFR+FCGDLGN+VTD+ L
Sbjct: 23 EAARVGSRMAAGTKGTGRIHLRKAAGNVWNDPTLDDWPQNDFRIFCGDLGNEVTDDTLAN 82
Query: 107 TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163
F KYPSF +A+V+RD+ + K+KG+GFVS P D + A +NE + FVG+ R
Sbjct: 83 AFKKYPSFQRARVIRDRVSGKSKGYGFVSMLSPDDMLAA---LNEMNNKFVGNRPIR 136
>gi|70925274|ref|XP_735355.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56508942|emb|CAH87469.1| hypothetical protein PC302481.00.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD +
Sbjct: 21 ENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLD 80
Query: 80 ANKEMNDDF 88
A K MN+ F
Sbjct: 81 ALKNMNNTF 89
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 8/96 (8%)
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
K G V +KDP ++ +DFR+FCG+LGN+VT ++L F KY SF AKV+R+K
Sbjct: 5 KAAGIV-WKDPS----LDEWPENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREK 59
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159
R NKTKG+GFVS DPQD + A K MN + F+G+
Sbjct: 60 RNNKTKGYGFVSLSDPQDMLDALKNMN---NTFIGN 92
>gi|302660221|ref|XP_003021792.1| RNP domain protein [Trichophyton verrucosum HKI 0517]
gi|291185707|gb|EFE41174.1| RNP domain protein [Trichophyton verrucosum HKI 0517]
Length = 439
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 279 VRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 338
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 339 KSKGYGFVSFSDGDDYFKAAREMQGKY 365
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 300 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 359
Query: 148 EMN 150
EM
Sbjct: 360 EMQ 362
>gi|403335203|gb|EJY66775.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 205
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W T E+ +ND+R+FCGDLGN+V D++L F KY SF+KA+VVRDK T
Sbjct: 81 LRKAAGKQWEDPTLEEWPDNDYRIFCGDLGNEVNDDVLANAFKKYQSFVKARVVRDKVTL 140
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KGFGFVS + D+I+A +EMN +
Sbjct: 141 KSKGFGFVSIMNQDDYIKAMREMNGKY 167
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++D+R+FCGDLGN+V D++L F KY SF+KA+VVRDK T K+KGFGFVS + D+I+
Sbjct: 99 DNDYRIFCGDLGNEVNDDVLANAFKKYQSFVKARVVRDKVTLKSKGFGFVSIMNQDDYIK 158
Query: 145 ANKEMN 150
A +EMN
Sbjct: 159 AMREMN 164
>gi|164660256|ref|XP_001731251.1| hypothetical protein MGL_1434 [Malassezia globosa CBS 7966]
gi|159105151|gb|EDP44037.1| hypothetical protein MGL_1434 [Malassezia globosa CBS 7966]
Length = 242
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF GDLGNDV DE L+R F KYPSF +A+VVR+K KTKG+GFV+F DP+DF+
Sbjct: 109 DPSHKRLFVGDLGNDVHDEHLVRAFQKYPSFSRARVVRNKSDGKTKGYGFVAFADPEDFL 168
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 169 KAWKEMDGKY 178
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDLGNDV DE L+R F KYPSF +A+VVR+K KTKG+GFV+F DP+DF++A KE
Sbjct: 114 RLFVGDLGNDVHDEHLVRAFQKYPSFSRARVVRNKSDGKTKGYGFVAFADPEDFLKAWKE 173
Query: 149 MN 150
M+
Sbjct: 174 MD 175
>gi|327302044|ref|XP_003235714.1| RNP domain-containing protein [Trichophyton rubrum CBS 118892]
gi|326461056|gb|EGD86509.1| RNP domain-containing protein [Trichophyton rubrum CBS 118892]
Length = 415
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT
Sbjct: 254 VRSGGGQTWTDSTLLEWDPAHFRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTE 313
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 314 KSKGYGFVSFSDGDDYFKAAREMQGKY 340
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLFCG+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 275 FRLFCGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 334
Query: 148 EMN 150
EM
Sbjct: 335 EMQ 337
>gi|68074393|ref|XP_679111.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56499775|emb|CAH97093.1| conserved hypothetical protein [Plasmodium berghei]
Length = 154
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD +
Sbjct: 21 ENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLD 80
Query: 80 ANKEMNDDF 88
A K MN+ F
Sbjct: 81 ALKNMNNTF 89
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD + A
Sbjct: 22 NDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLDA 81
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 82 LKNMN---NTFIGN 92
>gi|70954022|ref|XP_746078.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526587|emb|CAH89028.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 154
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD +
Sbjct: 21 ENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLD 80
Query: 80 ANKEMNDDF 88
A K MN+ F
Sbjct: 81 ALKNMNNTF 89
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 8/96 (8%)
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
K G V +KDP ++ +DFR+FCG+LGN+VT ++L F KY SF AKV+R+K
Sbjct: 5 KAAGIV-WKDPS----LDEWPENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREK 59
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159
R NKTKG+GFVS DPQD + A K MN + F+G+
Sbjct: 60 RNNKTKGYGFVSLSDPQDMLDALKNMN---NTFIGN 92
>gi|330842195|ref|XP_003293068.1| hypothetical protein DICPUDRAFT_24635 [Dictyostelium purpureum]
gi|325076629|gb|EGC30400.1| hypothetical protein DICPUDRAFT_24635 [Dictyostelium purpureum]
Length = 100
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 60/80 (75%), Gaps = 3/80 (3%)
Query: 11 SWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W+ T DENDFR+F GDLGNDVTD++L++ F KYP+ LKAKV+R+K + KTKGFGF
Sbjct: 6 TWVDPTLSEWDENDFRIFIGDLGNDVTDDMLMQAFVKYPTLLKAKVIREK-SGKTKGFGF 64
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF D++ A ++MN +
Sbjct: 65 VSFSGSNDYLNAMRDMNGKY 84
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GDLGNDVTD++L++ F KYP+ LKAKV+R+K + KTKGFGFVSF D++ A
Sbjct: 18 NDFRIFIGDLGNDVTDDMLMQAFVKYPTLLKAKVIREK-SGKTKGFGFVSFSGSNDYLNA 76
Query: 146 NKEMN 150
++MN
Sbjct: 77 MRDMN 81
>gi|221057562|ref|XP_002261289.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247294|emb|CAQ40694.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 181
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W + +D ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR N
Sbjct: 29 LRKAAGVVWKDSSLDDWPENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNN 88
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVS +PQD + A K MN+ F
Sbjct: 89 KTKGYGFVSLSNPQDMLDALKNMNNKF 115
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS +PQD + A
Sbjct: 48 NDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSNPQDMLDA 107
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 108 LKNMN---NKFIGN 118
>gi|82793143|ref|XP_727923.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23484008|gb|EAA19488.1| RNA recognition motif, putative [Plasmodium yoelii yoelii]
Length = 168
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD +
Sbjct: 47 ENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLD 106
Query: 80 ANKEMNDDF 88
A K MN+ F
Sbjct: 107 ALKNMNNTF 115
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS DPQD + A
Sbjct: 48 NDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSDPQDMLDA 107
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 108 LKNMN---NTFIGN 118
>gi|240278130|gb|EER41637.1| RNP domain-containing protein [Ajellomyces capsulatus H143]
Length = 446
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS +A+V+RDKRT
Sbjct: 278 VRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQRARVIRDKRTE 337
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 338 KSKGYGFVSFSDGEDYFRAAREMQGKY 364
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS +A+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 299 FRLFAGNLAGEVTDDSLLKAFSKYPSVQRARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 358
Query: 148 EMN 150
EM
Sbjct: 359 EMQ 361
>gi|430814500|emb|CCJ28272.1| unnamed protein product [Pneumocystis jirovecii]
Length = 220
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCEDEN--DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G + W + + N FRLF GDLG +V+DE L + F Y S KAKV+RDK+T
Sbjct: 80 LREGGGTVWEDPSLLEWNPAHFRLFAGDLGGEVSDETLFKAFQHYRSLSKAKVIRDKKTG 139
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFV+FKDP +F+RA +EMN +
Sbjct: 140 KSKGYGFVAFKDPDEFVRAWREMNGKY 166
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 6/96 (6%)
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMN-DDFRLFCGDLGNDVTDELLIRTFSKYPSF 114
++KR + G ++DP E N FRLF GDLG +V+DE L + F Y S
Sbjct: 73 KEKRITVLREGGGTVWEDPSLL-----EWNPAHFRLFAGDLGGEVSDETLFKAFQHYRSL 127
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KAKV+RDK+T K+KG+GFV+FKDP +F+RA +EMN
Sbjct: 128 SKAKVIRDKKTGKSKGYGFVAFKDPDEFVRAWREMN 163
>gi|297844004|ref|XP_002889883.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
gi|297335725|gb|EFH66142.1| ATRBP45B [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 95/208 (45%), Gaps = 41/208 (19%)
Query: 1 MLGLRPGPISSWIKKTCEDEN-------DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKA 52
+ G P P W + + + R L+ GDL + + L F+ + A
Sbjct: 34 IAGAAPPPPQMWNPQAAAPPSAQPMTVDEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSA 93
Query: 53 KVVRDKRTNKTKGFGFVSFKD-------------------PQDFIRAN---------KEM 84
KV+R+K+T + +G+GF+ F P R N ++
Sbjct: 94 KVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD 153
Query: 85 NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+ D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D + I
Sbjct: 154 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRATGRTKGYGFVRFSDESEQI 213
Query: 144 RANKEMNEFP----HLFVGDLKTRSSIT 167
RA EMN P + +G ++ +T
Sbjct: 214 RAMTEMNGVPCSTRPMRIGPAASKKGVT 241
>gi|325096192|gb|EGC49502.1| RNP domain-containing protein [Ajellomyces capsulatus H88]
Length = 441
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW T D FRLF G+L +VTD+ L++ FSKYPS +A+V+RDKRT
Sbjct: 278 VRSGGGQSWTDSTLLEWDPAHFRLFAGNLAGEVTDDSLLKAFSKYPSVQRARVIRDKRTE 337
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D +D+ RA +EM +
Sbjct: 338 KSKGYGFVSFSDGEDYFRAAREMQGKY 364
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS +A+V+RDKRT K+KG+GFVSF D +D+ RA +
Sbjct: 299 FRLFAGNLAGEVTDDSLLKAFSKYPSVQRARVIRDKRTEKSKGYGFVSFSDGEDYFRAAR 358
Query: 148 EMN 150
EM
Sbjct: 359 EMQ 361
>gi|85115934|ref|XP_964958.1| hypothetical protein NCU03099 [Neurospora crassa OR74A]
gi|28926757|gb|EAA35722.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 453
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF
Sbjct: 292 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFF 351
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 352 QAAKEMNGKY 361
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF +A K
Sbjct: 296 LRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAK 355
Query: 148 EMN 150
EMN
Sbjct: 356 EMN 358
>gi|255089637|ref|XP_002506740.1| RNA binding protein [Micromonas sp. RCC299]
gi|226522013|gb|ACO67998.1| RNA binding protein [Micromonas sp. RCC299]
Length = 280
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W K+ D END+R+F GDLG + TDE L R F++YPSF KA+VV+D+ + K KGFGFV
Sbjct: 156 WEDKSLADWPENDYRIFVGDLGVECTDETLARAFARYPSFQKARVVKDRHSGKGKGFGFV 215
Query: 70 SFKDPQDFIRANKEMNDDF 88
S D D+ RA KEMN +
Sbjct: 216 SLMDGGDYARAIKEMNGKY 234
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+R+F GDLG + TDE L R F++YPSF KA+VV+D+ + K KGFGFVS D D+ R
Sbjct: 166 ENDYRIFVGDLGVECTDETLARAFARYPSFQKARVVKDRHSGKGKGFGFVSLMDGGDYAR 225
Query: 145 ANKEMN 150
A KEMN
Sbjct: 226 AIKEMN 231
>gi|350296569|gb|EGZ77546.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 455
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF
Sbjct: 294 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFF 353
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 354 QAAKEMNGKY 363
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF +A K
Sbjct: 298 LRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAK 357
Query: 148 EMN 150
EMN
Sbjct: 358 EMN 360
>gi|367020126|ref|XP_003659348.1| hypothetical protein MYCTH_2296252 [Myceliophthora thermophila ATCC
42464]
gi|347006615|gb|AEO54103.1| hypothetical protein MYCTH_2296252 [Myceliophthora thermophila ATCC
42464]
Length = 376
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP+DF
Sbjct: 227 DPTHLRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPEDFF 286
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 287 QAAKEMNGKY 296
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP+DF +A K
Sbjct: 231 LRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPEDFFQAAK 290
Query: 148 EMN 150
EMN
Sbjct: 291 EMN 293
>gi|336464479|gb|EGO52719.1| hypothetical protein NEUTE1DRAFT_133314 [Neurospora tetrasperma
FGSC 2508]
Length = 453
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF
Sbjct: 292 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFF 351
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 352 QAAKEMNGKY 361
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF +A K
Sbjct: 296 LRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAK 355
Query: 148 EMN 150
EMN
Sbjct: 356 EMN 358
>gi|336267134|ref|XP_003348333.1| hypothetical protein SMAC_02831 [Sordaria macrospora k-hell]
gi|380091985|emb|CCC10253.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 463
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF
Sbjct: 299 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFF 358
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 359 QAAKEMNGKY 368
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KAKVVRDKRT K+KGFGFVSF DP+DF +A K
Sbjct: 303 LRLFVGNLAGETTDESLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAK 362
Query: 148 EMN 150
EMN
Sbjct: 363 EMN 365
>gi|389584452|dbj|GAB67184.1| RNA-binding protein [Plasmodium cynomolgi strain B]
Length = 181
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W + +D ENDFR+FCG+LGN+VT ++L F KY SF AKV+R+KR N
Sbjct: 29 LRKAAGVVWKDPSLDDWPENDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNN 88
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVS PQD + A K MN+ F
Sbjct: 89 KTKGYGFVSLSSPQDMLDALKNMNNKF 115
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+FCG+LGN+VT ++L F KY SF AKV+R+KR NKTKG+GFVS PQD + A
Sbjct: 48 NDFRIFCGNLGNEVTTDILANAFRKYKSFNMAKVIREKRNNKTKGYGFVSLSSPQDMLDA 107
Query: 146 NKEMNEFPHLFVGD 159
K MN + F+G+
Sbjct: 108 LKNMN---NKFIGN 118
>gi|367043720|ref|XP_003652240.1| hypothetical protein THITE_2113503 [Thielavia terrestris NRRL 8126]
gi|346999502|gb|AEO65904.1| hypothetical protein THITE_2113503 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP+DF
Sbjct: 235 DPAHLRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPEDFF 294
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 295 QAAKEMNGKY 304
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KAKV+RDKRTNK+KGFGFVSF DP+DF +A K
Sbjct: 239 LRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVIRDKRTNKSKGFGFVSFSDPEDFFQAAK 298
Query: 148 EMN 150
EMN
Sbjct: 299 EMN 301
>gi|21592583|gb|AAM64532.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 404
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 43/209 (20%)
Query: 1 MLGLRPGPISSW---------IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51
+ G P P W ++ T DE L+ GDL + + L F+ +
Sbjct: 31 IAGAAPPPPQMWNPQAAAPPSVQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVS 89
Query: 52 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------------------- 86
AKV+R+K+T + +G+GF+ F R + N+
Sbjct: 90 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLXWASLSSGDKRD 149
Query: 87 ---DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
D+ +F GDL DVTD +L+ TF + YPS AKVV ++ T +TKG+GFV F D +
Sbjct: 150 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVINRVTGRTKGYGFVRFSDESEQ 209
Query: 143 IRANKEMNEFP----HLFVGDLKTRSSIT 167
IRA EMN P + +G ++ +T
Sbjct: 210 IRAMTEMNGVPCSTRPMRIGPAASKKGVT 238
>gi|346979522|gb|EGY22974.1| RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 383
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L +VTDE L++ F+++PS KA+VVRDKRT+K+KGFGFV+F D DF
Sbjct: 235 DPSHLRLFVGNLAGEVTDESLLKAFARWPSVAKARVVRDKRTSKSKGFGFVAFSDADDFF 294
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 295 QAAKEMNGKY 304
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L +VTDE L++ F+++PS KA+VVRDKRT+K+KGFGFV+F D DF +A K
Sbjct: 239 LRLFVGNLAGEVTDESLLKAFARWPSVAKARVVRDKRTSKSKGFGFVAFSDADDFFQAAK 298
Query: 148 EMN 150
EMN
Sbjct: 299 EMN 301
>gi|116180428|ref|XP_001220063.1| hypothetical protein CHGG_00842 [Chaetomium globosum CBS 148.51]
gi|88185139|gb|EAQ92607.1| hypothetical protein CHGG_00842 [Chaetomium globosum CBS 148.51]
Length = 372
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TDE L++ F+++ S KAKVVRDKRT K+KGFGFVSF DP+DF
Sbjct: 221 DPAHLRLFVGNLAGETTDESLLKAFARWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFF 280
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 281 QAAKEMNGKY 290
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ F+++ S KAKVVRDKRT K+KGFGFVSF DP+DF +A K
Sbjct: 225 LRLFVGNLAGETTDESLLKAFARWKSVQKAKVVRDKRTTKSKGFGFVSFSDPEDFFQAAK 284
Query: 148 EMN 150
EMN
Sbjct: 285 EMN 287
>gi|331217197|ref|XP_003321277.1| hypothetical protein PGTG_02319 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309300267|gb|EFP76858.1| hypothetical protein PGTG_02319 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 286
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 54/70 (77%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF GDL +V+D+ L FSK+ SF+KA+VVRDK T K+KG+GFVS+KDP+DF+
Sbjct: 156 DPAHFRLFVGDLAPEVSDDGLAAAFSKWSSFVKARVVRDKVTTKSKGYGFVSYKDPEDFM 215
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 216 KAWKEMNGKY 225
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 52/63 (82%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL +V+D+ L FSK+ SF+KA+VVRDK T K+KG+GFVS+KDP+DF++A K
Sbjct: 160 FRLFVGDLAPEVSDDGLAAAFSKWSSFVKARVVRDKVTTKSKGYGFVSYKDPEDFMKAWK 219
Query: 148 EMN 150
EMN
Sbjct: 220 EMN 222
>gi|378731499|gb|EHY57958.1| hypothetical protein HMPREF1120_05978 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 5 RPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
R G + W T D FR+F G+L +VTDE L++ FS+YPS KA+V+RDKRTNK
Sbjct: 212 RSGGGTQWTDPTLLEWDPAHFRIFVGNLAGEVTDESLLKAFSQYPSVQKARVIRDKRTNK 271
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDF 88
+KG+GFVSF + D+ RA +E N +
Sbjct: 272 SKGYGFVSFANGDDYFRAAREQNGKY 297
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FR+F G+L +VTDE L++ FS+YPS KA+V+RDKRTNK+KG+GFVSF + D+ RA +
Sbjct: 232 FRIFVGNLAGEVTDESLLKAFSQYPSVQKARVIRDKRTNKSKGYGFVSFANGDDYFRAAR 291
Query: 148 EMN 150
E N
Sbjct: 292 EQN 294
>gi|308799675|ref|XP_003074618.1| putative RRM-containing protein (ISS) [Ostreococcus tauri]
gi|116000789|emb|CAL50469.1| putative RRM-containing protein (ISS) [Ostreococcus tauri]
Length = 316
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFI 78
END+R+F GDLGN+ TDE+L R F+KYPSF KAKVV DK+ K KG+GFVSF D D+
Sbjct: 128 ENDYRIFVGDLGNECTDEMLARAFAKYPSFAKAKVVMDKQNPGKNKGYGFVSFLDVVDYS 187
Query: 79 RANKEMNDDF 88
A KEMN F
Sbjct: 188 TAMKEMNGKF 197
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFIR 144
+D+R+F GDLGN+ TDE+L R F+KYPSF KAKVV DK+ K KG+GFVSF D D+
Sbjct: 129 NDYRIFVGDLGNECTDEMLARAFAKYPSFAKAKVVMDKQNPGKNKGYGFVSFLDVVDYST 188
Query: 145 ANKEMN 150
A KEMN
Sbjct: 189 AMKEMN 194
>gi|389633073|ref|XP_003714189.1| RNA-binding protein [Magnaporthe oryzae 70-15]
gi|351646522|gb|EHA54382.1| RNA-binding protein [Magnaporthe oryzae 70-15]
gi|440473697|gb|ELQ42479.1| RNA-binding protein [Magnaporthe oryzae Y34]
gi|440481179|gb|ELQ61791.1| RNA-binding protein [Magnaporthe oryzae P131]
Length = 412
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TDE L++ FS++ S K+KV+RDKRTNK+KG+GFVSF DP DF
Sbjct: 266 DPTHLRLFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFF 325
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 326 QAAKEMNGKY 335
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S K+KV+RDKRTNK+KG+GFVSF DP DF +A K
Sbjct: 270 LRLFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFFQAAK 329
Query: 148 EMN 150
EMN
Sbjct: 330 EMN 332
>gi|115447379|ref|NP_001047469.1| Os02g0622500 [Oryza sativa Japonica Group]
gi|113537000|dbj|BAF09383.1| Os02g0622500, partial [Oryza sativa Japonica Group]
Length = 137
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+ FVSF + D A
Sbjct: 27 DDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
Query: 146 NKEMN 150
KEMN
Sbjct: 87 LKEMN 91
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 51/68 (75%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+DFRLFCGDLGN+V D++L + FSKYPSF A+V+RDK T KT+G+ FVSF + D A
Sbjct: 27 DDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
Query: 81 NKEMNDDF 88
KEMN +
Sbjct: 87 LKEMNGKY 94
>gi|296423714|ref|XP_002841398.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637636|emb|CAZ85589.1| unnamed protein product [Tuber melanosporum]
Length = 318
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFV+F D ++
Sbjct: 201 DPSHFRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTTKSKGYGFVAFSDGDEYF 260
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 261 RAAREMNGKY 270
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKYPS KA+V+RDKRT K+KG+GFV+F D ++ RA +
Sbjct: 205 FRLFVGNLAGEVTDDSLLKAFSKYPSVQKARVIRDKRTTKSKGYGFVAFSDGDEYFRAAR 264
Query: 148 EMN 150
EMN
Sbjct: 265 EMN 267
>gi|323449251|gb|EGB05141.1| hypothetical protein AURANDRAFT_7855 [Aureococcus
anophagefferens]
Length = 117
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R +W T E E DFRLF G++GN+VTDELL +F +YPS +AKV+R+K TN
Sbjct: 1 IRHAAGKTWRDDTLEQWPEGDFRLFVGNIGNEVTDELLSHSFGRYPSLSRAKVIRNKHTN 60
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KGF F+SF DP D +A +EM +
Sbjct: 61 KSKGFAFISFMDPFDCAKALREMTGKY 87
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 50/63 (79%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
DFRLF G++GN+VTDELL +F +YPS +AKV+R+K TNK+KGF F+SF DP D +A
Sbjct: 21 DFRLFVGNIGNEVTDELLSHSFGRYPSLSRAKVIRNKHTNKSKGFAFISFMDPFDCAKAL 80
Query: 147 KEM 149
+EM
Sbjct: 81 REM 83
>gi|346321049|gb|EGX90649.1| RNP domain protein [Cordyceps militaris CM01]
Length = 360
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G + W +T D + RLF G+LG + TD+ L++ F+++PS +A+V+RDKRT
Sbjct: 202 VRHGGGTKWTDETLLEWDPSHLRLFVGNLGGETTDDALLKAFARWPSVQRARVIRDKRTT 261
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D DF +A KEMN+ +
Sbjct: 262 KSKGYGFVSFSDADDFFQAAKEMNNKY 288
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 49/65 (75%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
RLF G+LG + TD+ L++ F+++PS +A+V+RDKRT K+KG+GFVSF D DF +A
Sbjct: 221 SHLRLFVGNLGGETTDDALLKAFARWPSVQRARVIRDKRTTKSKGYGFVSFSDADDFFQA 280
Query: 146 NKEMN 150
KEMN
Sbjct: 281 AKEMN 285
>gi|402078029|gb|EJT73378.1| hypothetical protein GGTG_10219 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 425
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + R+F G+L + TDE L++ FS++ S KAKVVRDKR NK+KG+GFV+F DP DF
Sbjct: 273 DPSHLRIFVGNLAGETTDESLLKAFSRWKSVAKAKVVRDKRNNKSKGYGFVAFADPDDFF 332
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 333 QAAKEMNGKY 342
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
R+F G+L + TDE L++ FS++ S KAKVVRDKR NK+KG+GFV+F DP DF +A K
Sbjct: 277 LRIFVGNLAGETTDESLLKAFSRWKSVAKAKVVRDKRNNKSKGYGFVAFADPDDFFQAAK 336
Query: 148 EMN 150
EMN
Sbjct: 337 EMN 339
>gi|342879560|gb|EGU80805.1| hypothetical protein FOXB_08672 [Fusarium oxysporum Fo5176]
Length = 350
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TD+ L++ FS++PS KA+V+RDKRT+K+KG+GFVSF D DF
Sbjct: 208 DPSHLRLFVGNLAGETTDDALLKAFSRWPSVQKARVIRDKRTSKSKGYGFVSFSDADDFF 267
Query: 79 RANKEMNDDF 88
+A KEMN+ +
Sbjct: 268 QAAKEMNNKY 277
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++PS KA+V+RDKRT+K+KG+GFVSF D DF +A K
Sbjct: 212 LRLFVGNLAGETTDDALLKAFSRWPSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAK 271
Query: 148 EMN 150
EMN
Sbjct: 272 EMN 274
>gi|303287160|ref|XP_003062869.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455505|gb|EEH52808.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 106
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W KT D END+R+F GDLG +V+D+ L R F KY SF KA+VV+DK T K++GFGFV
Sbjct: 12 WQDKTLGDWPENDYRIFVGDLGTEVSDDHLARAFGKYASFQKARVVKDKTTQKSRGFGFV 71
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF D D+ A +EMN +
Sbjct: 72 SFMDSADYSSAMREMNGKY 90
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+F GDLG +V+D+ L R F KY SF KA+VV+DK T K++GFGFVSF D D+ A
Sbjct: 23 NDYRIFVGDLGTEVSDDHLARAFGKYASFQKARVVKDKTTQKSRGFGFVSFMDSADYSSA 82
Query: 146 NKEMN 150
+EMN
Sbjct: 83 MREMN 87
>gi|326513006|dbj|BAK03410.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525779|dbj|BAJ88936.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 436
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
L+ GDL + + + F+ F K++RDK+T + +G+GFV F
Sbjct: 93 LWIGDLQYWMDENYIYSCFANTGEFQSVKLIRDKQTGQLQGYGFVEFASHAAAERVLQTF 152
Query: 76 --------------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
++ A ++ +D D+ +F GDL DVTD +L TF YPS AK
Sbjct: 153 NGQMMPNVELAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAK 212
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T ++KG+GFV F DP + RA EMN P
Sbjct: 213 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 247
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 49/164 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 176 DDTPDYTIFVGDLAADVTDYMLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 235
Query: 77 FIRANKEMN------------------------------------------DDFRLFCGD 94
RA EMN ++ +F G
Sbjct: 236 QARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGG 295
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
L +VT++ L + F+ Y + K+ KR GFV + +
Sbjct: 296 LDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYAN 333
>gi|384247965|gb|EIE21450.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 135
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 54/69 (78%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFR+F GDLGN+V D++L + F K+ SF KAKV+R+K TNKTKGFGFVSF D + ++
Sbjct: 20 ENDFRIFVGDLGNEVNDDVLTKAFQKFTSFAKAKVIRNKHTNKTKGFGFVSFTDTIEGVK 79
Query: 80 ANKEMNDDF 88
A +EM+ +
Sbjct: 80 ALREMDGQY 88
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GDLGN+V D++L + F K+ SF KAKV+R+K TNKTKGFGFVSF D + ++A
Sbjct: 21 NDFRIFVGDLGNEVNDDVLTKAFQKFTSFAKAKVIRNKHTNKTKGFGFVSFTDTIEGVKA 80
Query: 146 NKEMN 150
+EM+
Sbjct: 81 LREMD 85
>gi|290972000|ref|XP_002668753.1| predicted protein [Naegleria gruberi]
gi|284082267|gb|EFC36009.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
END+R++ +LGN+VTD++L F YPSF KA V+RDKRTN++KGFGF+SF D D+I
Sbjct: 263 SENDYRIYANNLGNEVTDQMLTTFFQSYPSFSKACVIRDKRTNRSKGFGFISFLDSNDYI 322
Query: 79 RANKEMNDDF 88
A + +N +
Sbjct: 323 HALENLNGKY 332
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R++ +LGN+VTD++L F YPSF KA V+RDKRTN++KGFGF+SF D D+I A
Sbjct: 265 NDYRIYANNLGNEVTDQMLTTFFQSYPSFSKACVIRDKRTNRSKGFGFISFLDSNDYIHA 324
Query: 146 NKEMN 150
+ +N
Sbjct: 325 LENLN 329
>gi|255932889|ref|XP_002557915.1| Pc12g10950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582534|emb|CAP80722.1| Pc12g10950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 348
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D + FRLF G+L +VTDE L++ FS+YPS KA+V+R+KRT
Sbjct: 198 VRSGGGETWTDPTLLEWDPSHFRLFVGNLAGEVTDESLLKAFSRYPSVQKARVIREKRTQ 257
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D+ RA K+M +
Sbjct: 258 KSKGYGFVSFSGSDDYFRAGKDMEGKY 284
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 48/64 (75%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
FRLF G+L +VTDE L++ FS+YPS KA+V+R+KRT K+KG+GFVSF D+ RA
Sbjct: 217 SHFRLFVGNLAGEVTDESLLKAFSRYPSVQKARVIREKRTQKSKGYGFVSFSGSDDYFRA 276
Query: 146 NKEM 149
K+M
Sbjct: 277 GKDM 280
>gi|440637361|gb|ELR07280.1| hypothetical protein GMDG_08351 [Geomyces destructans 20631-21]
Length = 339
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 12/109 (11%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FR+F G+L +VTDE L++ F+++PS KA+VVRDKRT K+KGFGFVSF D DF
Sbjct: 227 DPAHFRIFVGNLAGEVTDESLLKAFARWPSVQKARVVRDKRTTKSKGFGFVSFADGDDFF 286
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 127
+A +EM + +G+ L+ R+ ++ +KA V RD + K
Sbjct: 287 QAAREMQGKY------IGSHPV--LIKRSTTE----IKAVVPRDNKRGK 323
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FR+F G+L +VTDE L++ F+++PS KA+VVRDKRT K+KGFGFVSF D DF +A +
Sbjct: 231 FRIFVGNLAGEVTDESLLKAFARWPSVQKARVVRDKRTTKSKGFGFVSFADGDDFFQAAR 290
Query: 148 EMN 150
EM
Sbjct: 291 EMQ 293
>gi|345565387|gb|EGX48337.1| hypothetical protein AOL_s00080g307 [Arthrobotrys oligospora ATCC
24927]
Length = 376
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VTDE L++ F+ YPS KA+V+RDKRT K+KG+GFV+F+D D+
Sbjct: 244 DPAHFRLFVGNLAGEVTDESLLKAFASYPSVQKARVIRDKRTTKSKGYGFVAFQDGDDYF 303
Query: 79 RANKEMNDDF 88
+A +EM +
Sbjct: 304 KAAREMQGKY 313
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L++ F+ YPS KA+V+RDKRT K+KG+GFV+F+D D+ +A +
Sbjct: 248 FRLFVGNLAGEVTDESLLKAFASYPSVQKARVIRDKRTTKSKGYGFVAFQDGDDYFKAAR 307
Query: 148 EMN 150
EM
Sbjct: 308 EMQ 310
>gi|212533119|ref|XP_002146716.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
gi|210072080|gb|EEA26169.1| RNP domain protein [Talaromyces marneffei ATCC 18224]
Length = 371
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L + FSKYPS KA+V+RDKRT
Sbjct: 218 VRSGGGQTWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLKKAFSKYPSIQKARVIRDKRTE 277
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K++G+GF+SF D D+ +A +EM +
Sbjct: 278 KSRGYGFISFSDGDDYFKAGREMQGKY 304
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L + FSKYPS KA+V+RDKRT K++G+GF+SF D D+ +A +
Sbjct: 239 FRLFVGNLAGEVTDDSLKKAFSKYPSIQKARVIRDKRTEKSRGYGFISFSDGDDYFKAGR 298
Query: 148 EMN 150
EM
Sbjct: 299 EMQ 301
>gi|353242490|emb|CCA74130.1| related to RNA-binding protein [Piriformospora indica DSM 11827]
Length = 212
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF GD+ NDV+D LL F+KYPSF KAKV+RDK + K K FGFV+F DP+DF+
Sbjct: 103 DPQWFRLFVGDVSNDVSDTLLAEAFNKYPSFTKAKVIRDKLSQKAK-FGFVAFSDPEDFL 161
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 162 KAWKEMDGKY 171
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 5/95 (5%)
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
R K+T + G +++DP + + + FRLF GD+ NDV+D LL F+KYPSF
Sbjct: 79 RGKKTTVVRRGGGKTWEDP-TLLEWDPQW---FRLFVGDVSNDVSDTLLAEAFNKYPSFT 134
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KAKV+RDK + K K FGFV+F DP+DF++A KEM+
Sbjct: 135 KAKVIRDKLSQKAK-FGFVAFSDPEDFLKAWKEMD 168
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 27/174 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
L PG SS+ ++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 63 LSPGSASSFARRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSK 122
Query: 63 TKGFGFVSFKDPQDFIRANKEMN--------------------------DDFRLFCGDLG 96
+GFV + DPQ RA + +N + F +F GDL
Sbjct: 123 GYNYGFVEYDDPQCAERAMQTLNGRRVHQQEIRVNWAYQSNTISKEDTSNHFHIFVGDLS 182
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
N+V DE+L++ FS + + +A+V+ D +T +++G+GFVSF+D D +A M+
Sbjct: 183 NEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVSFRDRGDAEKALSSMD 236
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + + +A+V+ D +T +++G+GFVSF+D D +A
Sbjct: 172 NHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVSFRDRGDAEKA 231
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 232 LSSMDGEW 239
>gi|67517823|ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
gi|40747053|gb|EAA66209.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 28/175 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 71 VSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNQFNS 130
Query: 64 KG--FGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDL 95
KG +GFV F DP Q IR ANKE ++ F +F GDL
Sbjct: 131 KGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDL 190
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M+
Sbjct: 191 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMD 245
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 48/71 (67%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D
Sbjct: 178 DTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADA 237
Query: 78 IRANKEMNDDF 88
+A M+ ++
Sbjct: 238 EKALTSMDGEW 248
>gi|1546894|emb|CAA69250.1| ssRNA-binding protein [Dictyostelium discoideum]
Length = 291
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 12 WIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W T D NDFR+F GDLGNDVT+E+L + F KYP+FLKAKV+ DK K++GFGFV
Sbjct: 187 WTDHTLAEWDPNDFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFDK-VGKSRGFGFV 245
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF D D+I A MN +
Sbjct: 246 SFSDSSDYISAFNTMNGKY 264
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GDLGNDVT+E+L + F KYP+FLKAKV+ DK K++GFGFVSF D D+I A
Sbjct: 198 NDFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFDK-VGKSRGFGFVSFSDSSDYISA 256
Query: 146 NKEMN 150
MN
Sbjct: 257 FNTMN 261
>gi|19115740|ref|NP_594828.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|1723516|sp|Q10355.1|YDB2_SCHPO RecName: Full=Uncharacterized RNA-binding protein C22E12.02
gi|1220277|emb|CAA93889.1| RNA-binding protein [Schizosaccharomyces pombe]
Length = 219
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D N FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F+
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFL 84
Query: 79 RANKEMNDDF 88
+A +E N +
Sbjct: 85 KAWREKNGKY 94
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+ FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F++A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
Query: 146 NKEMN 150
+E N
Sbjct: 87 WREKN 91
>gi|212722596|ref|NP_001131852.1| uncharacterized protein LOC100193230 [Zea mays]
gi|194692726|gb|ACF80447.1| unknown [Zea mays]
gi|413919585|gb|AFW59517.1| hypothetical protein ZEAMMB73_768040 [Zea mays]
Length = 434
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + FS K++RDK + + +G+GFV F
Sbjct: 88 LWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTY 147
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 148 NGQMMPNVDLTFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 207
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T +TKG+GFV F DP + RA EMN P
Sbjct: 208 VVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMP 242
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 70/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 171 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTE 230
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 231 QARAMTEMNGMPCSSRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT+++L + FS Y + K+ KR GFV F
Sbjct: 291 PNVTEDVLKQAFSPYGEVIHVKIPVGKRC------GFVQF 324
>gi|399219238|emb|CCF76125.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+F G+LGN+VTD++L F KY SF KAKV+R RT KT+G+GFVS P D + A
Sbjct: 55 DDFRIFVGNLGNEVTDDMLANAFRKYKSFNKAKVIRVARTGKTRGYGFVSLSSPDDMLSA 114
Query: 146 NKEMNEFPHLFVGD 159
EMN H +VG+
Sbjct: 115 LNEMN---HAYVGN 125
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR W T ++ ++DFR+F G+LGN+VTD++L F KY SF KAKV+R RT
Sbjct: 36 LRKAAFQIWCDPTMQEWPKDDFRIFVGNLGNEVTDDMLANAFRKYKSFNKAKVIRVARTG 95
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KT+G+GFVS P D + A EMN +
Sbjct: 96 KTRGYGFVSLSSPDDMLSALNEMNHAY 122
>gi|413919584|gb|AFW59516.1| hypothetical protein ZEAMMB73_768040, partial [Zea mays]
Length = 428
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + FS K++RDK + + +G+GFV F
Sbjct: 88 LWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTY 147
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 148 NGQMMPNVDLTFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 207
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T +TKG+GFV F DP + RA EMN P
Sbjct: 208 VVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMP 242
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 70/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 171 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTE 230
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 231 QARAMTEMNGMPCSSRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT+++L + FS Y + K+ KR GFV F
Sbjct: 291 PNVTEDVLKQAFSPYGEVIHVKIPVGKRC------GFVQF 324
>gi|400601281|gb|EJP68924.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 368
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 53/70 (75%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+LG + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF
Sbjct: 228 DPSHLRLFVGNLGGETTDDALLKAFSRWGSVQKARVIRDKRTSKSKGYGFVSFSDADDFF 287
Query: 79 RANKEMNDDF 88
+A KEMN+ +
Sbjct: 288 QAAKEMNNKY 297
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 49/63 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+LG + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF +A K
Sbjct: 232 LRLFVGNLGGETTDDALLKAFSRWGSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAK 291
Query: 148 EMN 150
EMN
Sbjct: 292 EMN 294
>gi|299747715|ref|XP_001837209.2| hypothetical protein CC1G_00345 [Coprinopsis cinerea okayama7#130]
gi|298407647|gb|EAU84826.2| hypothetical protein CC1G_00345 [Coprinopsis cinerea okayama7#130]
Length = 235
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ +
Sbjct: 92 LRKGGGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNKYPSFTKARVIRDRLSQ 151
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ ++
Sbjct: 152 KAK-YGFVAFSDPEDFLKAWKEMDGEY 177
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 113 FRLFVGDLSNDVSDDVLANAFNKYPSFTKARVIRDRLSQKAK-YGFVAFSDPEDFLKAWK 171
Query: 148 EMN 150
EM+
Sbjct: 172 EMD 174
>gi|242777340|ref|XP_002479014.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
gi|218722633|gb|EED22051.1| RNP domain protein [Talaromyces stipitatus ATCC 10500]
Length = 381
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L + FS+YPS KA+V+RDKRT
Sbjct: 231 IRSGGGQTWSDPTLLEWDPAHFRLFVGNLAGEVTDDSLKKAFSRYPSIQKARVIRDKRTE 290
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 291 KSKGYGFVSFSDGDDYFKAAREMQGKY 317
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L + FS+YPS KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 252 FRLFVGNLAGEVTDDSLKKAFSRYPSIQKARVIRDKRTEKSKGYGFVSFSDGDDYFKAAR 311
Query: 148 EMN 150
EM
Sbjct: 312 EMQ 314
>gi|71005492|ref|XP_757412.1| hypothetical protein UM01265.1 [Ustilago maydis 521]
gi|46096418|gb|EAK81651.1| hypothetical protein UM01265.1 [Ustilago maydis 521]
Length = 297
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF GDLGNDV+DELL TF KY SF KA+VVR+K K KG+GFV+F DP+DF+
Sbjct: 169 DPSHKRLFVGDLGNDVSDELLSSTFQKYASFSKARVVRNK-DGKAKGYGFVAFADPEDFL 227
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 228 KAWKEMDGKY 237
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDLGNDV+DELL TF KY SF KA+VVR+K K KG+GFV+F DP+DF++A KE
Sbjct: 174 RLFVGDLGNDVSDELLSSTFQKYASFSKARVVRNK-DGKAKGYGFVAFADPEDFLKAWKE 232
Query: 149 MN 150
M+
Sbjct: 233 MD 234
>gi|326495314|dbj|BAJ85753.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 385
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 27/157 (17%)
Query: 21 NDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP----- 74
N+ R L+ GDL + + + F+ K++RDK+T + +G+GF+ F
Sbjct: 80 NEARTLWIGDLQYWMDENYVYNCFASTGEVQSVKLIRDKQTGQLQGYGFIEFTSRAGAER 139
Query: 75 --QDF---IRANKEM---------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
Q F + N EM D+ +F GDL DVTD LL TF ++YPS
Sbjct: 140 VLQTFNGAMMPNVEMTYRLNWATAGEKHDDGADYTIFVGDLAADVTDYLLQETFRAQYPS 199
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F DP + RA EMN
Sbjct: 200 VKGAKVVTDKLTMRSKGYGFVKFGDPTEQTRAMTEMN 236
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 69/161 (42%), Gaps = 46/161 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF ++YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 168 DDGADYTIFVGDLAADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTE 227
Query: 77 FIRANKEMN---------------------------------------DDFRLFCGDLGN 97
RA EMN + +F G L
Sbjct: 228 QTRAMTEMNGMICSSRPMRIGPAANKQKANGVQEKVPTAQGIQTDNDPSNSTIFVGGLDP 287
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
T+++L + F+ Y + K+ KR GFV +
Sbjct: 288 SATEDVLKQVFTPYGEVVHVKIPVGKRC------GFVQYAS 322
>gi|326513618|dbj|BAJ87828.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 388
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 27/157 (17%)
Query: 21 NDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP----- 74
N+ R L+ GDL + + + F+ K++RDK+T + +G+GF+ F
Sbjct: 80 NEARTLWIGDLQYWMDENYVYNCFASTGEVQSVKLIRDKQTGQLQGYGFIEFTSRAGAER 139
Query: 75 --QDF---IRANKEM---------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
Q F + N EM D+ +F GDL DVTD LL TF ++YPS
Sbjct: 140 VLQTFNGAMMPNVEMAYRLNWATAGEKHDDGADYTIFVGDLAADVTDYLLQETFRAQYPS 199
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F DP + RA EMN
Sbjct: 200 VKGAKVVTDKLTMRSKGYGFVKFGDPTEQTRAMTEMN 236
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 46/159 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF ++YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 168 DDGADYTIFVGDLAADVTDYLLQETFRAQYPSVKGAKVVTDKLTMRSKGYGFVKFGDPTE 227
Query: 77 FIRANKEMN---------------------------------------DDFRLFCGDLGN 97
RA EMN + +F G L
Sbjct: 228 QTRAMTEMNGMICSSRPMRIGPAANKQKANGVQEKVPTAQGIQTDNDPSNSTIFVGGLDP 287
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
T+++L + F+ Y + K+ KR GFV +
Sbjct: 288 SATEDVLKQVFTPYGEVVHVKIPVGKRC------GFVQY 320
>gi|380486616|emb|CCF38587.1| RNP domain-containing protein [Colletotrichum higginsianum]
Length = 380
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L +VTDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 229 DPSHLRLFVGNLAGEVTDESLLKAFSRWKSVQKARVIRDKRTAKSKGYGFVSFSDADDFF 288
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 289 QAAKEMNGKY 298
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L +VTDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 233 LRLFVGNLAGEVTDESLLKAFSRWKSVQKARVIRDKRTAKSKGYGFVSFSDADDFFQAAK 292
Query: 148 EMN 150
EMN
Sbjct: 293 EMN 295
>gi|148910710|gb|ABR18422.1| unknown [Picea sitchensis]
Length = 418
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
L+ GDL + + + F + K++R+K+T +++G+GFV F
Sbjct: 81 LWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQNH 140
Query: 73 ------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ + F R N EM D+ +F GDL +DVTD LL TF S+Y +
Sbjct: 141 NGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVK 200
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 201 GAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMN 235
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 81/193 (41%), Gaps = 59/193 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D+ +F GDL +DVTD LL TF S+Y + AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 171 DYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRA 230
Query: 81 NKEMNDDF---------------------------------------------RLFCGDL 95
EMN F +F G L
Sbjct: 231 MTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPKAAAAAVPPQVVASDNDPNNTTIFVGGL 290
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155
VTDE+L + F ++ + K+ KR GFV F + RA+ E E +
Sbjct: 291 DPSVTDEMLRQLFGQFGELVHVKIPVGKRC------GFVQFNN-----RASAE--EALQM 337
Query: 156 FVGDLKTRSSITL 168
G + + +I L
Sbjct: 338 LHGTVLGQQAIRL 350
>gi|116789456|gb|ABK25253.1| unknown [Picea sitchensis]
Length = 487
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
L+ GDL + + + F + K++R+K+T +++G+GFV F
Sbjct: 81 LWVGDLQYWMDETYMQSCFGNNQEVVSVKIIRNKQTGQSEGYGFVEFASHAGAERFLQNH 140
Query: 73 ------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ + F R N EM D+ +F GDL +DVTD LL TF S+Y +
Sbjct: 141 NGAQMPNTEQFYRLNWATFGIGEKRPEMGPDYPIFVGDLASDVTDYLLQETFRSRYQTVK 200
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 201 GAKVVSDRVTGRSKGYGFVRFGDENEQVRAMTEMN 235
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 81/192 (42%), Gaps = 58/192 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D+ +F GDL +DVTD LL TF S+Y + AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 171 DYPIFVGDLASDVTDYLLQETFRSRYQTVKGAKVVSDRVTGRSKGYGFVRFGDENEQVRA 230
Query: 81 NKEMNDDF--------------------------------------------RLFCGDLG 96
EMN F +F G L
Sbjct: 231 MTEMNGMFCSSRPMRTGPATTKKTTGFQQPYPKAAAAVPPQVVASDNDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156
VTDE+L + F ++ + K+ KR GFV F + RA+ E E +
Sbjct: 291 PSVTDEMLRQLFGQFGELVHVKIPVGKRC------GFVQFNN-----RASAE--EALQML 337
Query: 157 VGDLKTRSSITL 168
G + + +I L
Sbjct: 338 HGTVLGQQAIRL 349
>gi|395328838|gb|EJF61228.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 220
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ +NK K FGFV+F DP+DF++A K
Sbjct: 116 FRLFVGDLSNDVSDDVLSNAFNKYPSFQKARVIRDRLSNKAK-FGFVAFSDPEDFLKAWK 174
Query: 83 EMNDDF 88
EM+ +
Sbjct: 175 EMDGKY 180
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ +NK K FGFV+F DP+DF++A K
Sbjct: 116 FRLFVGDLSNDVSDDVLSNAFNKYPSFQKARVIRDRLSNKAK-FGFVAFSDPEDFLKAWK 174
Query: 148 EMN 150
EM+
Sbjct: 175 EMD 177
>gi|413919586|gb|AFW59518.1| hypothetical protein ZEAMMB73_768040 [Zea mays]
Length = 329
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + FS K++RDK + + +G+GFV F
Sbjct: 88 LWIGDLQYWMDDNYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTY 147
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 148 NGQMMPNVDLTFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 207
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T +TKG+GFV F DP + RA EMN P
Sbjct: 208 VVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMP 242
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 70/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 171 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTE 230
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 231 QARAMTEMNGMPCSSRPMRIGPAASRKNAGGVVQERVPNSQGAQSENDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT+++L + FS Y + K+ KR GFV F
Sbjct: 291 PNVTEDVLKQAFSPYGEVIHVKIPVGKRC------GFVQF 324
>gi|393215961|gb|EJD01452.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 223
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T D + FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ +
Sbjct: 97 LRKGAGKVWEDQTLLEWDSSWFRLFVGDLSNDVSDDVLANAFNKYPSFTKARVIRDQLSQ 156
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 157 KAK-YGFVAFSDPEDFLKAWKEMDGKY 182
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 118 FRLFVGDLSNDVSDDVLANAFNKYPSFTKARVIRDQLSQKAK-YGFVAFSDPEDFLKAWK 176
Query: 148 EMN 150
EM+
Sbjct: 177 EMD 179
>gi|402225950|gb|EJU06010.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 221
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W KT D FRLF GDL NDV+D++L F+KYP+F KA+V+RD+ T
Sbjct: 97 LRKGAGKVWEDKTLLEWDPKWFRLFVGDLSNDVSDDVLTNAFNKYPTFTKARVIRDRLTQ 156
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K + +GFV+F DP+DF++A KEM+ +
Sbjct: 157 KAR-YGFVAFSDPEDFLKAWKEMDGKY 182
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KYP+F KA+V+RD+ T K + +GFV+F DP+DF++A K
Sbjct: 118 FRLFVGDLSNDVSDDVLTNAFNKYPTFTKARVIRDRLTQKAR-YGFVAFSDPEDFLKAWK 176
Query: 148 EMN 150
EM+
Sbjct: 177 EMD 179
>gi|406867658|gb|EKD20696.1| RNP domain protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 353
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G S+W + D FRLF G+L +VTDE L + FS++PS KA+V+RDKRT
Sbjct: 207 VRSGGGSTWTDSSLLEWDPAHFRLFVGNLAGEVTDESLQKAFSRWPSVQKARVIRDKRTT 266
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D DF +A ++M +
Sbjct: 267 KSKGYGFVSFSDGDDFFQAARDMQGKY 293
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L + FS++PS KA+V+RDKRT K+KG+GFVSF D DF +A +
Sbjct: 228 FRLFVGNLAGEVTDESLQKAFSRWPSVQKARVIRDKRTTKSKGYGFVSFSDGDDFFQAAR 287
Query: 148 EMN 150
+M
Sbjct: 288 DMQ 290
>gi|407928385|gb|EKG21243.1| hypothetical protein MPH_01435 [Macrophomina phaseolina MS6]
Length = 378
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VTDE L + FS++PS KA+VVRDKRT K+KG+GFVSF + D+
Sbjct: 248 DPAHFRLFVGNLAGEVTDESLHKAFSRFPSIQKARVVRDKRTTKSKGYGFVSFSNGDDYF 307
Query: 79 RANKEMNDDF 88
+A KEM +
Sbjct: 308 QAAKEMQGKY 317
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L + FS++PS KA+VVRDKRT K+KG+GFVSF + D+ +A K
Sbjct: 252 FRLFVGNLAGEVTDESLHKAFSRFPSIQKARVVRDKRTTKSKGYGFVSFSNGDDYFQAAK 311
Query: 148 EM 149
EM
Sbjct: 312 EM 313
>gi|412992239|emb|CCO19952.1| RNA-binding protein 42 [Bathycoccus prasinos]
Length = 268
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
WI T + ND+R+F GDLG + TDE L + FS Y SF KA+VVRDK+T K+KG+GFV
Sbjct: 114 WIDNTLSEWPANDYRIFVGDLGPECTDEQLAKAFSAYGSFAKARVVRDKKTMKSKGYGFV 173
Query: 70 SFKDPQDFIRANKEMNDDF 88
S D DF +A KE++ +
Sbjct: 174 SMMDSMDFAKAMKEVHGKW 192
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+F GDLG + TDE L + FS Y SF KA+VVRDK+T K+KG+GFVS D DF +A
Sbjct: 125 NDYRIFVGDLGPECTDEQLAKAFSAYGSFAKARVVRDKKTMKSKGYGFVSMMDSMDFAKA 184
Query: 146 NKEMN 150
KE++
Sbjct: 185 MKEVH 189
>gi|396466614|ref|XP_003837731.1| hypothetical protein LEMA_P122660.1 [Leptosphaeria maculans JN3]
gi|312214294|emb|CBX94287.1| hypothetical protein LEMA_P122660.1 [Leptosphaeria maculans JN3]
Length = 330
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 14/129 (10%)
Query: 4 LRPGPISSWIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G W +T + N RLF G+L +VTDE L++ F+KYPS KA+VVRDK++
Sbjct: 168 IREGGGKQWEDETLLEWNPLHPRLFIGNLAGEVTDESLLKAFAKYPSLSKARVVRDKKST 227
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
K+K +GFVSF D D+ RA KEM + +G + +LI+ + S +KA V R
Sbjct: 228 KSKSYGFVSFADTDDYFRAAKEMQGKY------IG---SHPVLIKRAT---SEVKAVVKR 275
Query: 122 DKRTNKTKG 130
+ + +K +G
Sbjct: 276 EDKHDKNRG 284
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTDE L++ F+KYPS KA+VVRDK++ K+K +GFVSF D D+ RA KE
Sbjct: 190 RLFIGNLAGEVTDESLLKAFAKYPSLSKARVVRDKKSTKSKSYGFVSFADTDDYFRAAKE 249
Query: 149 M 149
M
Sbjct: 250 M 250
>gi|310790906|gb|EFQ26439.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 384
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L +VTDE L++ F+++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 235 DPSHLRLFVGNLAGEVTDESLLKAFARWKSVQKARVIRDKRTAKSKGYGFVSFSDADDFF 294
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 295 QAAKEMNGKY 304
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L +VTDE L++ F+++ S KA+V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 239 LRLFVGNLAGEVTDESLLKAFARWKSVQKARVIRDKRTAKSKGYGFVSFSDADDFFQAAK 298
Query: 148 EMN 150
EMN
Sbjct: 299 EMN 301
>gi|171687807|ref|XP_001908844.1| hypothetical protein [Podospora anserina S mat+]
gi|170943865|emb|CAP69517.1| unnamed protein product [Podospora anserina S mat+]
Length = 370
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ FS++ S KAKVVRDKRT K+KGFGFVSF D DF
Sbjct: 221 DPTHLRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDADDFF 280
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 281 QAAKEMNGKY 290
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KAKVVRDKRT K+KGFGFVSF D DF +A K
Sbjct: 225 LRLFVGNLAGETTDDSLLKAFSRWKSVQKAKVVRDKRTTKSKGFGFVSFSDADDFFQAAK 284
Query: 148 EMN 150
EMN
Sbjct: 285 EMN 287
>gi|357166074|ref|XP_003580589.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Brachypodium distachyon]
Length = 426
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
L+ GDL + + + F+ K++RDK+T + +G+GFV F
Sbjct: 90 LWIGDLQYWMDETYIHGCFASTGELQSVKLIRDKQTGQLQGYGFVEFTSHAAAERVLQGY 149
Query: 76 --------------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
++ A ++ +D D+ +F GDL DVTD +L TF YPS AK
Sbjct: 150 NGHAMPNVDLAYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAK 209
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T ++KG+GFV F DP + RA EMN P
Sbjct: 210 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP 244
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 69/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 173 DDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 232
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 233 QARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPNTNTQGAQSDNDPNNTTIFVGGLD 292
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT++ L + F+ Y + K+ KR GFV F
Sbjct: 293 PNVTEDALKQVFAPYGEVIHVKIPVGKRC------GFVQF 326
>gi|413921125|gb|AFW61057.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 322
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + F+ K++RDK T + +G+GF+ F
Sbjct: 123 LWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTY 182
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD +L TF + YPS AK
Sbjct: 183 NGTMMPNVELPFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAK 242
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T +TKG+GFV F DP + RA EMN
Sbjct: 243 VVTDKLTMRTKGYGFVKFGDPNEQARAMTEMN 274
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF + YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 206 DDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNE 265
Query: 77 FIRANKEMN 85
RA EMN
Sbjct: 266 QARAMTEMN 274
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F + K++ DK T K
Sbjct: 72 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFTTK 131
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 GHNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156
N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+ D A+K +N +
Sbjct: 192 NEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR---DRAEADKALNSMDGEW 248
Query: 157 VGDLKTR 163
+G R
Sbjct: 249 LGSRAIR 255
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 119
T+ G +S ++R + L+ G L VT+++L + F + K+
Sbjct: 63 TSPMSGVAMMSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKI 122
Query: 120 VRDKR-TNKTKGFGFVSFKDPQDFIRANKEMN 150
+ DK T K +GFV F DP RA + +N
Sbjct: 123 IPDKNFTTKGHNYGFVEFDDPGAAERAMQTLN 154
>gi|226504372|ref|NP_001141359.1| uncharacterized protein LOC100273450 [Zea mays]
gi|194704160|gb|ACF86164.1| unknown [Zea mays]
gi|413921127|gb|AFW61059.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + F+ K++RDK T + +G+GF+ F
Sbjct: 123 LWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTY 182
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD +L TF + YPS AK
Sbjct: 183 NGTMMPNVELPFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAK 242
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T +TKG+GFV F DP + RA EMN
Sbjct: 243 VVTDKLTMRTKGYGFVKFGDPNEQARAMTEMN 274
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 45/160 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF + YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 206 DDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNE 265
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 266 QARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPN 325
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VT+++L + F+ Y + K+ KR GFV + +
Sbjct: 326 VTEDMLKQVFTPYGDVVHVKIPVGKRC------GFVQYAN 359
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 72 MSPSSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNS 131
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNNTNKEDTSNHFHIFVGDL 191
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 SNEVNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSM 245
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 181 SNHFHIFVGDLSNEVNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEK 240
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 241 ALSSMDGEW 249
>gi|391874076|gb|EIT83014.1| RNA-binding protein [Aspergillus oryzae 3.042]
Length = 382
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT
Sbjct: 235 VRAGGGQTWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQ 294
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 295 KSKGYGFVSFSDGDDYFKAAREMQGKY 321
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 256 FRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 315
Query: 148 EMN 150
EM
Sbjct: 316 EMQ 318
>gi|238487908|ref|XP_002375192.1| RNP domain protein [Aspergillus flavus NRRL3357]
gi|220700071|gb|EED56410.1| RNP domain protein [Aspergillus flavus NRRL3357]
Length = 382
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT
Sbjct: 235 VRAGGGQTWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQ 294
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 295 KSKGYGFVSFSDGDDYFKAAREMQGKY 321
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 256 FRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 315
Query: 148 EMN 150
EM
Sbjct: 316 EMQ 318
>gi|358367405|dbj|GAA84024.1| RNP domain protein [Aspergillus kawachii IFO 4308]
Length = 381
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT K+KG+GFVSF D D+
Sbjct: 251 DPAHFRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYF 310
Query: 79 RANKEMNDDF 88
+A +EM +
Sbjct: 311 KAAREMQGKY 320
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 255 FRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 314
Query: 148 EM 149
EM
Sbjct: 315 EM 316
>gi|194702946|gb|ACF85557.1| unknown [Zea mays]
gi|413921126|gb|AFW61058.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 456
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + F+ K++RDK T + +G+GF+ F
Sbjct: 123 LWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTY 182
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD +L TF + YPS AK
Sbjct: 183 NGTMMPNVELPFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAK 242
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T +TKG+GFV F DP + RA EMN
Sbjct: 243 VVTDKLTMRTKGYGFVKFGDPNEQARAMTEMN 274
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 45/160 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF + YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 206 DDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNE 265
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 266 QARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPN 325
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VT+++L + F+ Y + K+ KR GFV + +
Sbjct: 326 VTEDMLKQVFTPYGDVVHVKIPVGKRC------GFVQYAN 359
>gi|134078881|emb|CAK40567.1| unnamed protein product [Aspergillus niger]
Length = 232
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT
Sbjct: 85 VRAGGGQTWSDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQ 144
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 145 KSKGYGFVSFSDGDDYFKAAREMQGKY 171
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 106 FRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 165
Query: 148 EM 149
EM
Sbjct: 166 EM 167
>gi|121701611|ref|XP_001269070.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
gi|119397213|gb|EAW07644.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
Length = 480
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 31/188 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F KV+ DK +
Sbjct: 73 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKVIPDKNKFNS 132
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ + F +F GDL
Sbjct: 133 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTTSKEDTSGHFHIFVGDL 192
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D A+K +N
Sbjct: 193 SNEVNDEILMQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRGD---ADKALNSMDGE 249
Query: 156 FVGDLKTR 163
++G R
Sbjct: 250 WLGSRAIR 257
>gi|413921124|gb|AFW61056.1| hypothetical protein ZEAMMB73_234884 [Zea mays]
Length = 453
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + D + F+ K++RDK T + +G+GF+ F
Sbjct: 113 LWIGDLQYWMDDNYIYGCFASTGEVQNVKLIRDKHTGQLQGYGFIEFISRAAAERVLQTY 172
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD +L TF + YPS AK
Sbjct: 173 NGTMMPNVELPFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAK 232
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T +TKG+GFV F DP + RA EMN
Sbjct: 233 VVTDKLTMRTKGYGFVKFGDPNEQARAMTEMN 264
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 45/160 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF + YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 196 DDTPDYTIFVGDLAADVTDYVLQETFRAHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPNE 255
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 256 QARAMTEMNGMLCSSRPMRIGPAANKKATVVQEKVPSAQGVQSDNDPNNTTIFVGGLDPN 315
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VT+++L + F+ Y + K+ KR GFV + +
Sbjct: 316 VTEDMLKQVFTPYGDVVHVKIPVGKRC------GFVQYAN 349
>gi|317032188|ref|XP_001394209.2| RNP domain protein [Aspergillus niger CBS 513.88]
gi|350631050|gb|EHA19421.1| hypothetical protein ASPNIDRAFT_38839 [Aspergillus niger ATCC 1015]
Length = 381
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT K+KG+GFVSF D D+
Sbjct: 251 DPAHFRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYF 310
Query: 79 RANKEMNDDF 88
+A +EM +
Sbjct: 311 KAAREMQGKY 320
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FSKY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 255 FRLFVGNLAGEVTDDSLLKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 314
Query: 148 EMN 150
EM
Sbjct: 315 EMQ 317
>gi|67526991|ref|XP_661557.1| hypothetical protein AN3953.2 [Aspergillus nidulans FGSC A4]
gi|40740072|gb|EAA59262.1| hypothetical protein AN3953.2 [Aspergillus nidulans FGSC A4]
gi|259481471|tpe|CBF75020.1| TPA: RNP domain protein (AFU_orthologue; AFUA_6G08040) [Aspergillus
nidulans FGSC A4]
Length = 353
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L + FSKY S KA+V+RDKRT
Sbjct: 206 VRSGGGQTWTDPTLLEWDPAHFRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQ 265
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 266 KSKGYGFVSFSDGDDYFKAAREMQGKY 292
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L + FSKY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 227 FRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 286
Query: 148 EMN 150
EM
Sbjct: 287 EMQ 289
>gi|169769765|ref|XP_001819352.1| RNP domain protein [Aspergillus oryzae RIB40]
gi|83767211|dbj|BAE57350.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 382
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT
Sbjct: 235 VRAGGGQTWTDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQ 294
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 295 KSKGYGFVSFSDGDDYFKAAREMQGKY 321
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ F+KY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 256 FRLFVGNLAGEVTDDSLLKAFAKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 315
Query: 148 EMN 150
EM
Sbjct: 316 EMQ 318
>gi|361130939|gb|EHL02669.1| putative Uncharacterized RNA-binding protein C22E12.02 [Glarea
lozoyensis 74030]
Length = 351
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VTDE L + FS++PS KA+V+RDKRT K+KGFGFVSF D +F
Sbjct: 220 DPAHFRLFVGNLAGEVTDESLYKAFSRWPSIQKARVIRDKRTTKSKGFGFVSFSDGDEFF 279
Query: 79 RANKEMNDDF 88
A +EM +
Sbjct: 280 SAAREMQGKY 289
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L + FS++PS KA+V+RDKRT K+KGFGFVSF D +F A +
Sbjct: 224 FRLFVGNLAGEVTDESLYKAFSRWPSIQKARVIRDKRTTKSKGFGFVSFSDGDEFFSAAR 283
Query: 148 EM 149
EM
Sbjct: 284 EM 285
>gi|75334879|sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
Short=Poly(A)-binding protein RBP47; AltName:
Full=RNA-binding protein 47; Short=NplRBP47
gi|9663769|emb|CAC01238.1| RNA Binding Protein 47 [Nicotiana plumbaginifolia]
Length = 428
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 31/167 (18%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I+ + ED ++ GDL + + L FS+ + K++R+K+T +++ +GFV F
Sbjct: 76 IQSSSEDNKT--IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFN 133
Query: 73 ------------------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ + R N E DF +F GDL +DVTD +L
Sbjct: 134 THAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTML 193
Query: 105 IRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TF S+YPS AKVV D T +KG+GFV F D + RA EMN
Sbjct: 194 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 240
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 59/178 (33%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN +
Sbjct: 228 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQ 287
Query: 89 --------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L ++VTDE L ++F+++ + K+ KG GFV F D
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSD 339
>gi|254574106|ref|XP_002494162.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033961|emb|CAY71983.1| Hypothetical protein PAS_chr4_0722 [Komagataella pastoris GS115]
Length = 192
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 5 RPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 64
RP S T + +F+LF G+LG DVT+E+L+ +FSKYPS V ++++T+K K
Sbjct: 85 RPSGASPSYSPTTSNSTEFKLFVGNLGQDVTEEVLLSSFSKYPSLQNVIVPKEQKTSKIK 144
Query: 65 GFGFVSFKDPQDFIRANKEMNDDF 88
G+GFVSF +D++ A KEMN +
Sbjct: 145 GYGFVSFASSEDYLNAFKEMNGKY 168
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
+F+LF G+LG DVT+E+L+ +FSKYPS V ++++T+K KG+GFVSF +D++ A
Sbjct: 102 EFKLFVGNLGQDVTEEVLLSSFSKYPSLQNVIVPKEQKTSKIKGYGFVSFASSEDYLNAF 161
Query: 147 KEMN 150
KEMN
Sbjct: 162 KEMN 165
>gi|451853041|gb|EMD66335.1| hypothetical protein COCSADRAFT_34902 [Cochliobolus sativus ND90Pr]
Length = 333
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G W +T + N RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++
Sbjct: 171 VREGGGKQWEDETLLEWNPLHPRLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKST 230
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+K +GFVSF D D+ RA KEMN +
Sbjct: 231 KSKSYGFVSFADTDDYFRAAKEMNGKY 257
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++ K+K +GFVSF D D+ RA KE
Sbjct: 193 RLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKSTKSKSYGFVSFADTDDYFRAAKE 252
Query: 149 MN 150
MN
Sbjct: 253 MN 254
>gi|452002611|gb|EMD95069.1| hypothetical protein COCHEDRAFT_1222293 [Cochliobolus
heterostrophus C5]
Length = 333
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 12 WIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W +T + N RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++ K+K +GFV
Sbjct: 179 WEDETLLEWNPLHPRLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKSTKSKSYGFV 238
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF D D+ RA KEMN +
Sbjct: 239 SFADTDDYFRAAKEMNGKY 257
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++ K+K +GFVSF D D+ RA KE
Sbjct: 193 RLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKSTKSKSYGFVSFADTDDYFRAAKE 252
Query: 149 MN 150
MN
Sbjct: 253 MN 254
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 32/189 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---T 60
+ P ++++ + N L+ G L VT+++L + F + K++ DK T
Sbjct: 72 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNGQFT 131
Query: 61 NKTKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGD 94
K +GFV F DP Q IR N ++ ++ F +F GD
Sbjct: 132 TKGHNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGD 191
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154
L N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+ D A+K +N
Sbjct: 192 LSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR---DRTEADKALNSMDG 248
Query: 155 LFVGDLKTR 163
++G R
Sbjct: 249 EWLGSRAIR 257
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 119
T+ G +S ++R + L+ G L VT+++L + F + K+
Sbjct: 63 TSPMSGVAMMSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKI 122
Query: 120 VRDKR---TNKTKGFGFVSFKDPQDFIRANKEMN 150
+ DK T K +GFV F DP RA + +N
Sbjct: 123 IPDKNGQFTTKGHNYGFVEFDDPGAAERAMQTLN 156
>gi|46108456|ref|XP_381286.1| hypothetical protein FG01110.1 [Gibberella zeae PH-1]
Length = 582
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF
Sbjct: 209 DPAHLRLFVGNLAGETTDDALLKAFSRWQSVQKARVIRDKRTSKSKGYGFVSFSDADDFF 268
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 269 QAAKEMNGKY 278
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF +A K
Sbjct: 213 LRLFVGNLAGETTDDALLKAFSRWQSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAK 272
Query: 148 EMN 150
EMN
Sbjct: 273 EMN 275
>gi|40253807|dbj|BAD05744.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
gi|40253847|dbj|BAD05783.1| putative RNA Binding Protein 45 [Oryza sativa Japonica Group]
Length = 427
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 21 NDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
N+ R L+ GDL + + + F+ K++RDK+T + +G+GF+ F
Sbjct: 92 NEVRTLWIGDLQYWMDENYISACFAPTGELQSVKLIRDKQTGQLQGYGFIEFTSHAGAER 151
Query: 76 -------------------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPS 113
++ A ++ +D D+ +F GDL DVTD +L TF YPS
Sbjct: 152 VLQTYNGAMMPNVEQTYRLNWASAGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPS 211
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F DP + RA EMN
Sbjct: 212 VKGAKVVTDKMTMRSKGYGFVKFGDPSEQARAMTEMN 248
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 45/160 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 180 DDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSE 239
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN + +F G L
Sbjct: 240 QARAMTEMNGMVCSSRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSNTTIFVGGLDPS 299
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VTD++L + F+ Y + K+ KR GFV F +
Sbjct: 300 VTDDMLKQVFTPYGDVVHVKIPVGKRC------GFVQFAN 333
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-K 62
+ P ++++ + N L+ G L VT+++L + F + K++ DK N K
Sbjct: 71 VSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSK 130
Query: 63 TKGFGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDLG 96
+GFV F DP Q IR ANKE ++ F +F GDL
Sbjct: 131 GANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLS 190
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 191 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LTSMDGEW 247
>gi|242074396|ref|XP_002447134.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
gi|241938317|gb|EES11462.1| hypothetical protein SORBIDRAFT_06g029180 [Sorghum bicolor]
Length = 440
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + ++ F K++RDK + + +G+GFV F
Sbjct: 94 LWIGDLQYWMDESYVLGCFLSTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTY 153
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 154 NGQMMPNVELTFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 213
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T +TKG+GFV F DP + RA EMN P
Sbjct: 214 VVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMP 248
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 69/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 177 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTE 236
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 237 QARAMTEMNGMPCSSRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLD 296
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT++ L + FS Y + K+ KR GFV F
Sbjct: 297 PNVTEDTLKQVFSPYGEVVHVKIPVGKRC------GFVQF 330
>gi|1899188|gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 31/167 (18%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I+ + ED ++ GDL + + L FS+ + K++R+K+T +++ +GFV F
Sbjct: 76 IQSSSEDNKT--IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFN 133
Query: 73 ------------------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ + R N E DF +F GDL +DVTD +L
Sbjct: 134 THAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTML 193
Query: 105 IRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TF S+YPS AKVV D T +KG+GFV F D + RA EMN
Sbjct: 194 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 240
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 59/178 (33%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN +
Sbjct: 228 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQ 287
Query: 89 --------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L +DVTDE L ++F+++ + K+ KG GFV F D
Sbjct: 288 SDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSD 339
>gi|189192536|ref|XP_001932607.1| RNP domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974213|gb|EDU41712.1| RNP domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 289
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G W +T + N RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++
Sbjct: 130 IREGGGKQWEDETLLEWNPLHPRLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKST 189
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K++ +GFVSF D D+ RA KEMN +
Sbjct: 190 KSRSYGFVSFSDTDDYFRAAKEMNGKY 216
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++ K++ +GFVSF D D+ RA KE
Sbjct: 152 RLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKSTKSRSYGFVSFSDTDDYFRAAKE 211
Query: 149 MN 150
MN
Sbjct: 212 MN 213
>gi|328354019|emb|CCA40416.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 157
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%)
Query: 5 RPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 64
RP S T + +F+LF G+LG DVT+E+L+ +FSKYPS V ++++T+K K
Sbjct: 50 RPSGASPSYSPTTSNSTEFKLFVGNLGQDVTEEVLLSSFSKYPSLQNVIVPKEQKTSKIK 109
Query: 65 GFGFVSFKDPQDFIRANKEMNDDF 88
G+GFVSF +D++ A KEMN +
Sbjct: 110 GYGFVSFASSEDYLNAFKEMNGKY 133
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
+F+LF G+LG DVT+E+L+ +FSKYPS V ++++T+K KG+GFVSF +D++ A
Sbjct: 67 EFKLFVGNLGQDVTEEVLLSSFSKYPSLQNVIVPKEQKTSKIKGYGFVSFASSEDYLNAF 126
Query: 147 KEMN 150
KEMN
Sbjct: 127 KEMN 130
>gi|330927808|ref|XP_003302008.1| hypothetical protein PTT_13679 [Pyrenophora teres f. teres 0-1]
gi|311322841|gb|EFQ89874.1| hypothetical protein PTT_13679 [Pyrenophora teres f. teres 0-1]
Length = 289
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G W +T + N RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++
Sbjct: 130 IREGGGKQWEDETLLEWNPLHPRLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKST 189
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K++ +GFVSF D D+ RA KEMN +
Sbjct: 190 KSRSYGFVSFSDTDDYFRAAKEMNGKY 216
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 48/62 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTD+ L++ F+KYPS KA+VVRDK++ K++ +GFVSF D D+ RA KE
Sbjct: 152 RLFIGNLAGEVTDDSLLKAFAKYPSLSKARVVRDKKSTKSRSYGFVSFSDTDDYFRAAKE 211
Query: 149 MN 150
MN
Sbjct: 212 MN 213
>gi|302696517|ref|XP_003037937.1| hypothetical protein SCHCODRAFT_80278 [Schizophyllum commune H4-8]
gi|300111634|gb|EFJ03035.1| hypothetical protein SCHCODRAFT_80278 [Schizophyllum commune H4-8]
Length = 205
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ +
Sbjct: 80 LRKGGGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLSNAFNKYPSFQKARVIRDRLSQ 139
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GF++F DP+DF++A KEM+ +
Sbjct: 140 KAK-YGFIAFSDPEDFLKAWKEMDGKY 165
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KYPSF KA+V+RD+ + K K +GF++F DP+DF++A K
Sbjct: 101 FRLFVGDLSNDVSDDVLSNAFNKYPSFQKARVIRDRLSQKAK-YGFIAFSDPEDFLKAWK 159
Query: 148 EMN 150
EM+
Sbjct: 160 EMD 162
>gi|2708532|gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 31/167 (18%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I+ + ED ++ GDL + + L FS+ + K++R+K+T +++ +GFV F
Sbjct: 130 IQSSSEDNKT--IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFN 187
Query: 73 ------------------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ + R N E DF +F GDL +DVTD +L
Sbjct: 188 THAAAEKVLQSYNGTMMPNAEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTML 247
Query: 105 IRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TF S+YPS AKVV D T +KG+GFV F D + RA EMN
Sbjct: 248 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 294
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 74/178 (41%), Gaps = 59/178 (33%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F
Sbjct: 222 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 281
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN +
Sbjct: 282 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQ 341
Query: 89 --------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L +DVTDE L ++F+++ + K+ KG GFV F D
Sbjct: 342 SDGDASNTTIFVGGLDSDVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSD 393
>gi|293336608|ref|NP_001168401.1| uncharacterized protein LOC100382170 [Zea mays]
gi|223948043|gb|ACN28105.1| unknown [Zea mays]
gi|414585352|tpg|DAA35923.1| TPA: hypothetical protein ZEAMMB73_028165 [Zea mays]
Length = 432
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + + FS K++RDK + + +G+GFV F
Sbjct: 94 LWIGDLQYWMDENYVFGCFSNTGEVQNVKLIRDKNSGQLQGYGFVEFTSRAAAERVLQTY 153
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D ++ +F GDL DVTD LL TF YPS AK
Sbjct: 154 NGQMMPNVDLTFRLNWASAGEKRDDTPEYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 213
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
VV DK T +TKG+GFV F DP + RA EMN P
Sbjct: 214 VVTDKLTMRTKGYGFVKFGDPTEQARAMTEMNGMP 248
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 69/160 (43%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D ++ +F GDL DVTD LL TF YPS AKVV DK T +TKG+GFV F DP +
Sbjct: 177 DDTPEYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKLTMRTKGYGFVKFGDPTE 236
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
RA EMN ++ +F G L
Sbjct: 237 QARAMTEMNGMPCSSRPMRIGPAASRKNTGGVVQERVPNSQGAQSENDPNNTTIFVGGLD 296
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT++ L + FS Y + K+ KR GFV F
Sbjct: 297 PNVTEDTLKQVFSPYGEVVHVKIPVGKRC------GFVQF 330
>gi|357144721|ref|XP_003573391.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Brachypodium distachyon]
Length = 435
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 21 NDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N+ R L+ GDL + + + F+ K++RDK+T + +G+GFV F R
Sbjct: 95 NEVRTLWIGDLQYWMDENYVYGCFAHTGEVQSVKLIRDKQTGQLQGYGFVEFTTRAGAER 154
Query: 80 ----------ANKEM---------------NDDFRLFCGDLGNDVTDELLIRTFS-KYPS 113
N EM D+ +F GDL DVTD +L TF YPS
Sbjct: 155 VLQTYNGATMPNVEMPYRLNWASAGEKRDDGPDYTIFVGDLAADVTDYILQETFRVHYPS 214
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F DP + RA EMN
Sbjct: 215 VKGAKVVTDKLTMRSKGYGFVKFSDPTEQTRAMTEMN 251
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 69/159 (43%), Gaps = 46/159 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 183 DDGPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKLTMRSKGYGFVKFSDPTE 242
Query: 77 FIRANKEMN---------------------------------------DDFRLFCGDLGN 97
RA EMN + +F G L
Sbjct: 243 QTRAMTEMNGMVCSSRPMRIGPAANKQKVSGAQEKVPSAQGVQSDSDPSNTTIFVGGLDP 302
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+VT+++L + F+ Y + K+ KR GFV +
Sbjct: 303 NVTEDMLKQVFAPYGEVVHVKIPVGKRC------GFVQY 335
>gi|393246090|gb|EJD53599.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 211
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T D + FRLF GDL NDV+D++L F+KY SF KA+V+RDK +
Sbjct: 87 LRKGAGKVWEDQTLLEWDSSWFRLFVGDLSNDVSDDVLTNAFNKYKSFTKARVIRDKLSQ 146
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 147 KAK-YGFVAFSDPEDFLKAWKEMDGKY 172
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RDK + K K +GFV+F DP+DF++A K
Sbjct: 108 FRLFVGDLSNDVSDDVLTNAFNKYKSFTKARVIRDKLSQKAK-YGFVAFSDPEDFLKAWK 166
Query: 148 EMN 150
EM+
Sbjct: 167 EMD 169
>gi|169768824|ref|XP_001818882.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus oryzae RIB40]
gi|238498168|ref|XP_002380319.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|83766740|dbj|BAE56880.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693593|gb|EED49938.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|391874569|gb|EIT83434.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 477
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 71 MSPTSAGGYVRRAAPEPNKRALYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNS 130
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 131 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDL 190
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 191 SNEVNDEILQQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRADADKALGSM 244
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +
Sbjct: 180 SNHFHIFVGDLSNEVNDEILQQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRADADK 239
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 240 ALGSMDGEW 248
>gi|408391396|gb|EKJ70774.1| hypothetical protein FPSE_09067 [Fusarium pseudograminearum CS3096]
Length = 351
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF
Sbjct: 209 DPAHLRLFVGNLAGETTDDALLKAFSRWQSVQKARVIRDKRTSKSKGYGFVSFSDADDFF 268
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 269 QAAKEMNGKY 278
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF +A K
Sbjct: 213 LRLFVGNLAGETTDDALLKAFSRWQSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAK 272
Query: 148 EMN 150
EMN
Sbjct: 273 EMN 275
>gi|125549823|gb|EAY95645.1| hypothetical protein OsI_17510 [Oryza sativa Indica Group]
Length = 426
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + + F+ K++RDK++ + +G+GFV F
Sbjct: 93 LWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQTY 152
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 153 NGQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 212
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T ++KG+GFV F DP + RA EMN
Sbjct: 213 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 244
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 45/158 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 176 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 235
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 236 QARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPN 295
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
VT+++L + F+ Y + K+ KR GFV +
Sbjct: 296 VTEDVLKQVFAPYGEVVHVKIPVGKRC------GFVQY 327
>gi|115460682|ref|NP_001053941.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|113565512|dbj|BAF15855.1| Os04g0625800 [Oryza sativa Japonica Group]
gi|215767966|dbj|BAH00195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 425
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + + F+ K++RDK++ + +G+GFV F
Sbjct: 92 LWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQTY 151
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 152 NGQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 211
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T ++KG+GFV F DP + RA EMN
Sbjct: 212 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 243
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 45/158 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 175 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 234
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 235 QARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPN 294
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
VT+++L + F+ Y + K+ KR GFV +
Sbjct: 295 VTEDVLKQVFAPYGEVVHVKIPVGKRC------GFVQY 326
>gi|39545835|emb|CAE04743.3| OSJNBb0060E08.6 [Oryza sativa Japonica Group]
gi|116309791|emb|CAH66831.1| OSIGBa0148A10.8 [Oryza sativa Indica Group]
Length = 414
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + + F+ K++RDK++ + +G+GFV F
Sbjct: 81 LWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQTY 140
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 141 NGQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 200
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T ++KG+GFV F DP + RA EMN
Sbjct: 201 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 232
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 45/158 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 164 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 223
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 224 QARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPN 283
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
VT+++L + F+ Y + K+ KR GFV +
Sbjct: 284 VTEDVLKQVFAPYGEVVHVKIPVGKRC------GFVQY 315
>gi|222629596|gb|EEE61728.1| hypothetical protein OsJ_16246 [Oryza sativa Japonica Group]
Length = 607
Score = 82.8 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + + F+ K++RDK++ + +G+GFV F
Sbjct: 41 LWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQTY 100
Query: 74 -----PQ-------DFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAK 118
P ++ A ++ +D D+ +F GDL DVTD LL TF YPS AK
Sbjct: 101 NGQMMPNVEMVFRLNWASAGEKRDDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAK 160
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV DK T ++KG+GFV F DP + RA EMN
Sbjct: 161 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 192
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 70/158 (44%), Gaps = 45/158 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 124 DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE 183
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN ++ +F G L +
Sbjct: 184 QARAMTEMNGMLCSSRPMRIGPAANKKTTGVQERVPNAQGAQSENDPNNTTIFVGGLDPN 243
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
VT+++L + F+ Y + K+ KR GFV +
Sbjct: 244 VTEDVLKQVFAPYGEVVHVKIPVGKRC------GFVQY 275
>gi|378726298|gb|EHY52757.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 481
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
+G PG +++ + N L+ G L VT+++L + F + K++ DK
Sbjct: 59 QVGPGPGSAGGVVRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVVSVKIIPDKNA 118
Query: 61 N-KTKGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLF 91
+KGF GFV + DP Q IR N ++ ++ F +F
Sbjct: 119 QFSSKGFNYGFVEYDDPGAAERAMTTLNGRRVHQAEIRVNWAYQSNSTNKEDTSNHFHIF 178
Query: 92 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M+
Sbjct: 179 VGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALASMD 237
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 172 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEK 231
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 232 ALASMDGEW 240
>gi|302922480|ref|XP_003053474.1| hypothetical protein NECHADRAFT_74653 [Nectria haematococca mpVI
77-13-4]
gi|256734415|gb|EEU47761.1| hypothetical protein NECHADRAFT_74653 [Nectria haematococca mpVI
77-13-4]
Length = 364
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF
Sbjct: 221 DPSHLRLFVGNLAGETTDDALLKAFSRWRSVQKARVIRDKRTSKSKGYGFVSFSDADDFF 280
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 281 QAAKEMNGKY 290
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ FS++ S KA+V+RDKRT+K+KG+GFVSF D DF +A K
Sbjct: 225 LRLFVGNLAGETTDDALLKAFSRWRSVQKARVIRDKRTSKSKGYGFVSFSDADDFFQAAK 284
Query: 148 EMN 150
EMN
Sbjct: 285 EMN 287
>gi|293337265|ref|NP_001168324.1| uncharacterized protein LOC100382091 [Zea mays]
gi|223947441|gb|ACN27804.1| unknown [Zea mays]
gi|223947469|gb|ACN27818.1| unknown [Zea mays]
gi|413933766|gb|AFW68317.1| hypothetical protein ZEAMMB73_975236, partial [Zea mays]
Length = 406
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + K++R+K+T + +G+GF+ F + Q
Sbjct: 72 LWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFSNHAVAEQVLQNY 131
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF S+YPS
Sbjct: 132 NGQMMPNVNQPFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYPSVK 191
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 192 GAKVVFDRTTGRSKGYGFVKFADSDEQTRAMTEMN 226
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 75/168 (44%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF S+YPS AKVV D+ T ++KG+GFV F
Sbjct: 154 EKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYPSVKGAKVVFDRTTGRSKGYGFVKFA 213
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + RA EMN + +
Sbjct: 214 DSDEQTRAMTEMNGQYCSSRAMRLGPASNKKNTGGPQPSSAIYQNTQGTDSDSDPNNTTV 273
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L VTDELL +TFS Y L K+ KR GFV + +
Sbjct: 274 FVGGLDPSVTDELLKQTFSPYGELLYVKIPVGKRC------GFVQYSN 315
>gi|41581275|emb|CAE47924.1| oligouridylate binding protein, putative [Aspergillus fumigatus]
Length = 485
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-K 62
+ P ++++ + N L+ G L VT+++L + F K++ DK N K
Sbjct: 72 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSK 131
Query: 63 TKGFGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDLG 96
+GFV F DP Q IR ANKE + F +F GDL
Sbjct: 132 GYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSANKEDTSSHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D A K +N +
Sbjct: 192 NEVNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD---AEKALNAMDGEW 248
Query: 157 VGDLKTR 163
+G R
Sbjct: 249 LGSRAIR 255
>gi|358391182|gb|EHK40586.1| hypothetical protein TRIATDRAFT_301415 [Trichoderma atroviride IMI
206040]
Length = 211
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 65 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFF 124
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 125 QAAKEMHGKY 134
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 69 LRLFVGNLAGETTDESLLKAFSRWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAK 128
Query: 148 EMN 150
EM+
Sbjct: 129 EMH 131
>gi|145341098|ref|XP_001415652.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575875|gb|ABO93944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFI 78
E+D R+F GDLGN+ DE+L R F+KYPSF KAKVV DK K KG+GFVSF D D+
Sbjct: 18 EDDHRIFVGDLGNECNDEMLARAFAKYPSFAKAKVVMDKMNPGKNKGYGFVSFLDIGDYA 77
Query: 79 RANKEMNDDF 88
RA KEM F
Sbjct: 78 RAMKEMAGKF 87
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFIR 144
DD R+F GDLGN+ DE+L R F+KYPSF KAKVV DK K KG+GFVSF D D+ R
Sbjct: 19 DDHRIFVGDLGNECNDEMLARAFAKYPSFAKAKVVMDKMNPGKNKGYGFVSFLDIGDYAR 78
Query: 145 ANKEM 149
A KEM
Sbjct: 79 AMKEM 83
>gi|440635298|gb|ELR05217.1| hypothetical protein GMDG_01655 [Geomyces destructans 20631-21]
Length = 503
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVS 70
+++ + N L+ G L VT+++L + F K++ DK +KGF GFV
Sbjct: 79 VRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGASKGFNYGFVE 138
Query: 71 FKDPQDFIRANKEMN--------------------------DDFRLFCGDLGNDVTDELL 104
+ DP RA + +N + F +F GDL N+V DE+L
Sbjct: 139 YDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVL 198
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
++ F + S +A+V+ D +T +++G+GFV+F++ QD +A M+
Sbjct: 199 LQAFCAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMD 244
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ F + S +A+V+ D +T +++G+GFV+F++ QD +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFCAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LSSMDGEW 247
>gi|169625220|ref|XP_001806014.1| hypothetical protein SNOG_15877 [Phaeosphaeria nodorum SN15]
gi|111055595|gb|EAT76715.1| hypothetical protein SNOG_15877 [Phaeosphaeria nodorum SN15]
Length = 330
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L +VTD+ L + FSKYPS +KA+VVRDK++ K+K +GFVSF D D+
Sbjct: 183 DPMHPRLFIGNLAGEVTDDSLHKAFSKYPSLVKARVVRDKKSTKSKSYGFVSFSDTDDYF 242
Query: 79 RANKEMNDDF 88
RA KEMN +
Sbjct: 243 RAFKEMNGKY 252
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 48/62 (77%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L +VTD+ L + FSKYPS +KA+VVRDK++ K+K +GFVSF D D+ RA KE
Sbjct: 188 RLFIGNLAGEVTDDSLHKAFSKYPSLVKARVVRDKKSTKSKSYGFVSFSDTDDYFRAFKE 247
Query: 149 MN 150
MN
Sbjct: 248 MN 249
>gi|403414895|emb|CCM01595.1| predicted protein [Fibroporia radiculosa]
Length = 220
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 95 LRKGAGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLSNAFNKYTSFQKARVIRDRLSA 154
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF+RA KEM+ +
Sbjct: 155 KAK-YGFVAFSDPEDFLRAWKEMDGKY 180
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF+RA K
Sbjct: 116 FRLFVGDLSNDVSDDVLSNAFNKYTSFQKARVIRDRLSAKAK-YGFVAFSDPEDFLRAWK 174
Query: 148 EMN 150
EM+
Sbjct: 175 EMD 177
>gi|452823904|gb|EME30910.1| polyadenylate-binding protein [Galdieria sulphuraria]
Length = 270
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+NDFRLF GDLG+D TDELL TF ++ + A+VV+DKRT + KG+GFVSF P+ I+
Sbjct: 163 DNDFRLFVGDLGHDATDELLQTTFGRFSGYNMARVVKDKRTGRCKGYGFVSFSKPEGMIQ 222
Query: 80 ANKEMNDDF 88
A K +N +
Sbjct: 223 AMKALNGKY 231
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++DFRLF GDLG+D TDELL TF ++ + A+VV+DKRT + KG+GFVSF P+ I+
Sbjct: 163 DNDFRLFVGDLGHDATDELLQTTFGRFSGYNMARVVKDKRTGRCKGYGFVSFSKPEGMIQ 222
Query: 145 ANKEMN 150
A K +N
Sbjct: 223 AMKALN 228
>gi|425767749|gb|EKV06311.1| hypothetical protein PDIP_80220 [Penicillium digitatum Pd1]
gi|425769522|gb|EKV08014.1| hypothetical protein PDIG_70900 [Penicillium digitatum PHI26]
Length = 353
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTDE L++ FS+Y S KA+VVR+KRT
Sbjct: 200 IRSGGGETWTDSTLLEWDPAHFRLFVGNLAGEVTDESLLKAFSRYTSVQKARVVREKRTQ 259
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K++G+GFVSF D+ +A +EM +
Sbjct: 260 KSQGYGFVSFSGSDDYFKAGREMQGKY 286
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L++ FS+Y S KA+VVR+KRT K++G+GFVSF D+ +A +
Sbjct: 221 FRLFVGNLAGEVTDESLLKAFSRYTSVQKARVVREKRTQKSQGYGFVSFSGSDDYFKAGR 280
Query: 148 EM 149
EM
Sbjct: 281 EM 282
>gi|340521037|gb|EGR51272.1| predicted protein [Trichoderma reesei QM6a]
Length = 210
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 65 DPSHLRLFVGNLAGETTDESLLKAFSRWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFF 124
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 125 QAAKEMHGKY 134
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ FS++ S KA+V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 69 LRLFVGNLAGETTDESLLKAFSRWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAK 128
Query: 148 EMN 150
EM+
Sbjct: 129 EMH 131
>gi|358371808|dbj|GAA88414.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 72 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNS 131
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDL 191
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSM 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 181 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADK 240
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 241 ALSSMDGEW 249
>gi|317030432|ref|XP_001392545.2| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus niger CBS 513.88]
Length = 478
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 72 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNS 131
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDL 191
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSM 245
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 181 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADK 240
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 241 ALSSMDGEW 249
>gi|134077058|emb|CAK39931.1| unnamed protein product [Aspergillus niger]
Length = 497
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F + K++ DK +
Sbjct: 72 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNS 131
Query: 64 KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG+ GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 KGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDL 191
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSM 245
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 181 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADK 240
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 241 ALSSMDGEW 249
>gi|115398882|ref|XP_001215030.1| hypothetical protein ATEG_05852 [Aspergillus terreus NIH2624]
gi|114191913|gb|EAU33613.1| hypothetical protein ATEG_05852 [Aspergillus terreus NIH2624]
Length = 348
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L + F+KY S KA+V+RDKRT
Sbjct: 201 VRSGGGQTWQDPTLLEWDPAHFRLFVGNLAGEVTDDSLFKAFAKYSSVQKARVIRDKRTQ 260
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 261 KSKGYGFVSFSDGDDYFKAAREMQGKY 287
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L + F+KY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 222 FRLFVGNLAGEVTDDSLFKAFAKYSSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 281
Query: 148 EMN 150
EM
Sbjct: 282 EMQ 284
>gi|297741313|emb|CBI32444.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 39/160 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE- 83
L+ GDL + D L F K++R+K+T +++G+GFV F F RA E
Sbjct: 11 LWVGDLHQWMDDNYLRTCFGHTGEVSSIKIIRNKQTGQSEGYGFVEF-----FSRATAEK 65
Query: 84 --------------------------------MNDDFRLFCGDLGNDVTDELLIRTFS-K 110
D +F GDL +DVTD LL TF+ +
Sbjct: 66 ILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETFATR 125
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 126 YPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMN 165
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DVTD LL TF+ +YPS AKVV D T ++KG+GFV F D + R
Sbjct: 100 SDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSR 159
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 160 AMNEMNG---IYC 169
>gi|336373577|gb|EGO01915.1| hypothetical protein SERLA73DRAFT_177545 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386396|gb|EGO27542.1| hypothetical protein SERLADRAFT_461190 [Serpula lacrymans var.
lacrymans S7.9]
Length = 214
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 88 LRKGGGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQ 147
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K FGFV+F DP+DF++A KEM+ +
Sbjct: 148 KAK-FGFVAFSDPEDFLKAWKEMDGKY 173
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K FGFV+F DP+DF++A K
Sbjct: 109 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQKAK-FGFVAFSDPEDFLKAWK 167
Query: 148 EMN 150
EM+
Sbjct: 168 EMD 170
>gi|119469244|ref|XP_001257924.1| RNP domain protein [Neosartorya fischeri NRRL 181]
gi|119406076|gb|EAW16027.1| RNP domain protein [Neosartorya fischeri NRRL 181]
Length = 372
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT
Sbjct: 227 VRSGGGQTWTDPTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQ 286
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF + D+ A +EM +
Sbjct: 287 KSKGYGFVSFSNGDDYFAAAREMQGKY 313
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT K+KG+GFVSF + D+ A +
Sbjct: 248 FRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQKSKGYGFVSFSNGDDYFAAAR 307
Query: 148 EMN 150
EM
Sbjct: 308 EMQ 310
>gi|357465449|ref|XP_003603009.1| RNA-binding protein [Medicago truncatula]
gi|355492057|gb|AES73260.1| RNA-binding protein [Medicago truncatula]
Length = 420
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + L R F+ KV+R+K+T +T+G+GFV F
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 72 --------KDP-----QDFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ P F + + +D D +F GDL DVTD +L+ TFS KYPS
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSV 214
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 215 KAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMN 250
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 74/177 (41%), Gaps = 46/177 (25%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K ++ D +F GDL DVTD +L+ TFS KYPS AKVV D T ++KG+GFV F
Sbjct: 178 HKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFG 237
Query: 73 DPQDFIRANKEMNDDF---------------------------------------RLFCG 93
D + +A EMN F +F G
Sbjct: 238 DDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVG 297
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L T E L + FS+Y + K+ KG GFV F + + A +++N
Sbjct: 298 GLDPSATAEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLN 348
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 78 IRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ D+ L+ GDL + + + L R F+ KV+R+K+T +T+G+GFV F
Sbjct: 83 VHHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEF 141
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 87/174 (50%), Gaps = 28/174 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L +T+++L + F + K++ DK ++
Sbjct: 68 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRITEDVLRQIFETAGHVVSVKIIPDKNKFQS 127
Query: 64 KG--FGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDL 95
KG +GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 128 KGLNYGFVEYDDPGTAERAMQTLNGRRVHQSEIRVNWAYQSNNQPKEDTSNHFHIFVGDL 187
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 188 SNEVNDEVLLQAFSAFGQVSEARVMWDMKTGRSRGYGFVAFRDRGDAEKALSSM 241
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 178 NHFHIFVGDLSNEVNDEVLLQAFSAFGQVSEARVMWDMKTGRSRGYGFVAFRDRGDAEKA 237
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 238 LSSMDGEW 245
>gi|389747284|gb|EIM88463.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 222
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 96 LRKGGGKEWEDQTLLEWNPAWFRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQ 155
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 156 KAK-YGFVAFSDPEDFLKAWKEMDGKY 181
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 117 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQKAK-YGFVAFSDPEDFLKAWK 175
Query: 148 EMN 150
EM+
Sbjct: 176 EMD 178
>gi|409050499|gb|EKM59976.1| hypothetical protein PHACADRAFT_250802 [Phanerochaete carnosa
HHB-10118-sp]
Length = 228
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 103 LRKGAGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSG 162
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 163 KAK-YGFVAFSDPEDFLKAWKEMDGKY 188
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 124 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSGKAK-YGFVAFSDPEDFLKAWK 182
Query: 148 EMN 150
EM+
Sbjct: 183 EMD 185
>gi|119495558|ref|XP_001264561.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
gi|119412723|gb|EAW22664.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Neosartorya fischeri NRRL 181]
Length = 477
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 30/187 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-K 62
+ P ++++ + N L+ G L VT+++L + F K++ DK N K
Sbjct: 72 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFNSK 131
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV F DP Q IR N ++ + F +F GDL
Sbjct: 132 GYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSSHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D A K +N +
Sbjct: 192 NEVNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD---AEKALNAMDGEW 248
Query: 157 VGDLKTR 163
+G R
Sbjct: 249 LGSRAIR 255
>gi|443926798|gb|ELU45361.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 217
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T D + RLF GDL NDV+D++L F+KYPSF KAKV+RD+ +
Sbjct: 87 LRKGAGKVWEDQTLLEWDSSWSRLFVGDLSNDVSDDVLANAFNKYPSFQKAKVIRDRLSQ 146
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
K K +GFV+F DP+DF++A K+M+
Sbjct: 147 KAK-YGFVAFSDPEDFLKAWKDMD 169
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDL NDV+D++L F+KYPSF KAKV+RD+ + K K +GFV+F DP+DF++A K+
Sbjct: 109 RLFVGDLSNDVSDDVLANAFNKYPSFQKAKVIRDRLSQKAK-YGFVAFSDPEDFLKAWKD 167
Query: 149 MN 150
M+
Sbjct: 168 MD 169
>gi|70991693|ref|XP_750695.1| RNP domain protein [Aspergillus fumigatus Af293]
gi|66848328|gb|EAL88657.1| RNP domain protein [Aspergillus fumigatus Af293]
Length = 370
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT
Sbjct: 225 VRSGGGQTWTDPTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQ 284
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF + D+ A +EM +
Sbjct: 285 KSKGYGFVSFSNGDDYFAAAREMQGKY 311
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT K+KG+GFVSF + D+ A +
Sbjct: 246 FRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQKSKGYGFVSFSNGDDYFAAAR 305
Query: 148 EMN 150
EM
Sbjct: 306 EMQ 308
>gi|347839348|emb|CCD53920.1| similar to nuclear and cytoplasmic polyadenylated RNA-binding
protein pub1 [Botryotinia fuckeliana]
Length = 506
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-- 61
+ P ++++ + N L+ G L VT+E+L + F K++ DK
Sbjct: 70 MSPDSAGGFVRRAAPEPNKRALYVGGLDPRVTEEILRQIFETTGHVQNVKIIPDKNVGAV 129
Query: 62 KTKGF--GFVSFKDPQDFIRANKEMN--------------------------DDFRLFCG 93
++KGF GFV + DP RA + +N + F +F G
Sbjct: 130 QSKGFNYGFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVG 189
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
DL N+V DE+L++ FS + S +A+V+ D +T +++G+GF +F++ QD +A M
Sbjct: 190 DLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSM 245
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GF +F++ QD +A
Sbjct: 182 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKA 241
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 242 LSSMDGEW 249
>gi|156045365|ref|XP_001589238.1| hypothetical protein SS1G_09871 [Sclerotinia sclerotiorum 1980]
gi|154694266|gb|EDN94004.1| hypothetical protein SS1G_09871 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 373
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + FRLF G+L +VTDE L + FS++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 236 DPSHFRLFVGNLAGEVTDESLHKAFSRWSSLQKARVIRDKRTTKSKGYGFVSFSDGDDFF 295
Query: 79 RANKEMNDDF 88
+A ++M +
Sbjct: 296 QAARDMQGKY 305
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L + FS++ S KA+V+RDKRT K+KG+GFVSF D DF +A +
Sbjct: 240 FRLFVGNLAGEVTDESLHKAFSRWSSLQKARVIRDKRTTKSKGYGFVSFSDGDDFFQAAR 299
Query: 148 EM 149
+M
Sbjct: 300 DM 301
>gi|358383867|gb|EHK21528.1| hypothetical protein TRIVIDRAFT_180415 [Trichoderma virens Gv29-8]
Length = 373
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L + TDE L++ F+++ S KA+V+RDKRT K+KG+GFVSF D DF
Sbjct: 226 DPSHLRLFVGNLAGETTDESLLKAFARWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFF 285
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 286 QAAKEMHGKY 295
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TDE L++ F+++ S KA+V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 230 LRLFVGNLAGETTDESLLKAFARWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAK 289
Query: 148 EMN 150
EM+
Sbjct: 290 EMH 292
>gi|449549775|gb|EMD40740.1| hypothetical protein CERSUDRAFT_111317 [Ceriporiopsis subvermispora
B]
Length = 217
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F++Y SF KA+V+RD+ +
Sbjct: 92 LRKGAGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNQYSSFQKARVIRDRLSG 151
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K FGFV+F DP+DF++A KEM+ +
Sbjct: 152 KAK-FGFVAFSDPEDFLKAWKEMDGKY 177
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F++Y SF KA+V+RD+ + K K FGFV+F DP+DF++A K
Sbjct: 113 FRLFVGDLSNDVSDDVLANAFNQYSSFQKARVIRDRLSGKAK-FGFVAFSDPEDFLKAWK 171
Query: 148 EMN 150
EM+
Sbjct: 172 EMD 174
>gi|159124258|gb|EDP49376.1| RNP domain protein [Aspergillus fumigatus A1163]
Length = 370
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT
Sbjct: 225 VRSGGGQTWTDPTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQ 284
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF + D+ A +EM +
Sbjct: 285 KSKGYGFVSFSNGDDYFAAAREMQGKY 311
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ FS+Y S KA+V+RDKRT K+KG+GFVSF + D+ A +
Sbjct: 246 FRLFVGNLAGEVTDDSLLKAFSRYSSVQKARVIRDKRTQKSKGYGFVSFSNGDDYFAAAR 305
Query: 148 EMN 150
EM
Sbjct: 306 EMQ 308
>gi|242033859|ref|XP_002464324.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
gi|241918178|gb|EER91322.1| hypothetical protein SORBIDRAFT_01g016170 [Sorghum bicolor]
Length = 409
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + K++R+K+T + +G+GF+ F + Q
Sbjct: 74 LWIGDLQYWMDENYLYSCFSQAGEVISVKIIRNKQTGQPEGYGFIEFGNHALAEQVLQNY 133
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF S+YPS
Sbjct: 134 NGQMMPNVNQPFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYPSVK 193
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 194 SAKVVFDRTTGRSKGYGFVKFADLDEQTRAMTEMN 228
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 75/169 (44%), Gaps = 50/169 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF S+YPS AKVV D+ T ++KG+GFV F
Sbjct: 156 EKRGDDGSDYTIFVGDLASDVTDFILQDTFKSRYPSVKSAKVVFDRTTGRSKGYGFVKFA 215
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------R 89
D + RA EMN +
Sbjct: 216 DLDEQTRAMTEMNGQYCSSRPMRLGPASNKKNTGGQPQPSSTIYQNTQGTDSDSDPNNTT 275
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L VTDELL +TFS Y L K+ KR GFV + +
Sbjct: 276 VFVGGLDPSVTDELLKQTFSPYGELLYVKIPVGKRC------GFVQYSN 318
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 3 GLRPGPISSWIKKTC-----EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 57
G +P P S+ + T D N+ +F G L VTDELL +TFS Y L K+
Sbjct: 249 GGQPQPSSTIYQNTQGTDSDSDPNNTTVFVGGLDPSVTDELLKQTFSPYGELLYVKIPVG 308
Query: 58 KRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCG 93
KR GFV + + RA+ E + R+ G
Sbjct: 309 KRC------GFVQYSN-----RASAE--EAIRMLNG 331
>gi|219121324|ref|XP_002185888.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582737|gb|ACI65358.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 117
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRT 60
+R +WI + +D +NDFR+F G++GNDVTD+ L F SKYPS L+ KVVRD +T
Sbjct: 3 VRSAAGKTWIDSSLDDWPQNDFRIFVGNMGNDVTDQQLYDHFVSKYPSLLRTKVVRDAKT 62
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMNDDF 88
+++KG+GFVS D + +A +EM+ +
Sbjct: 63 SESKGYGFVSLGDALECAKAIREMDQTW 90
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+DFR+F G++GNDVTD+ L F SKYPS L+ KVVRD +T+++KG+GFVS D +
Sbjct: 21 QNDFRIFVGNMGNDVTDQQLYDHFVSKYPSLLRTKVVRDAKTSESKGYGFVSLGDALECA 80
Query: 144 RANKEMNE 151
+A +EM++
Sbjct: 81 KAIREMDQ 88
>gi|302409198|ref|XP_003002433.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
gi|261358466|gb|EEY20894.1| nucleolysin TIA-1 [Verticillium albo-atrum VaMs.102]
Length = 443
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 25/170 (14%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
L PG + ++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 33 LSPGSAGGFGRRAAPEPNKRALYIGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK-NQKG 91
Query: 64 KGFGFVSFKDPQDFIRANKEMN------------------------DDFRLFCGDLGNDV 99
+GFV + DP RA + +N + F +F GDL N+V
Sbjct: 92 YNYGFVEYDDPGAAARAMQTLNGRRVHEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEV 151
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
DE+L + F+ + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 152 NDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 201
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + F+ + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 138 NHFHIFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 197
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 198 LSSMDGEW 205
>gi|225461001|ref|XP_002280601.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Vitis vinifera]
Length = 417
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----- 79
L+ GDL + + L FS+ + KV+R+K+T + +G+GF+ R
Sbjct: 92 LWIGDLQPWMEENYLWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTY 151
Query: 80 -----ANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N E N D+ +F GDL +DVTD +L TF YPS
Sbjct: 152 NGTLMPNSEQNFRLNWATLGAGERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVK 211
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 212 GAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMN 246
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D D+ +F GDL +DVTD +L TF YPS AKVV D+ T ++KG+GFV F
Sbjct: 174 ERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFG 233
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + +RA EMN F +
Sbjct: 234 DEGEQLRAMNEMNGMFCSTRPMRIGPAATKKPVGGQQFQKASFQNTQGNQGESDPNNTTI 293
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L ++VTD+ L + FS+Y + K+ KR GFV F +
Sbjct: 294 FVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRC------GFVQFAN 335
>gi|154318714|ref|XP_001558675.1| hypothetical protein BC1G_02746 [Botryotinia fuckeliana B05.10]
gi|347830611|emb|CCD46308.1| similar to RNP domain-containing protein [Botryotinia fuckeliana]
Length = 376
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G S W + D + FRLF G+L +VTDE L + FS++ S KA+V+RDKRT
Sbjct: 222 VRTGGGSQWTDSSLLEWDPSHFRLFVGNLAGEVTDESLHKAFSRWTSLQKARVIRDKRTT 281
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D DF +A ++M +
Sbjct: 282 KSKGYGFVSFSDGDDFFQAARDMQGKY 308
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTDE L + FS++ S KA+V+RDKRT K+KG+GFVSF D DF +A +
Sbjct: 243 FRLFVGNLAGEVTDESLHKAFSRWTSLQKARVIRDKRTTKSKGYGFVSFSDGDDFFQAAR 302
Query: 148 EM 149
+M
Sbjct: 303 DM 304
>gi|350629665|gb|EHA18038.1| hypothetical protein ASPNIDRAFT_176547 [Aspergillus niger ATCC
1015]
Length = 496
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-K 62
+ P ++++ + N L+ G L VT+++L + F + K++ DK N K
Sbjct: 72 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNFNSK 131
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV F DP Q IR N ++ ++ F +F GDL
Sbjct: 132 GYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSM 244
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 180 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADK 239
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 240 ALSSMDGEW 248
>gi|409079729|gb|EKM80090.1| hypothetical protein AGABI1DRAFT_84574 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198508|gb|EKV48434.1| hypothetical protein AGABI2DRAFT_135534 [Agaricus bisporus var.
bisporus H97]
Length = 218
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 92 LRKGGGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSG 151
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 152 KAK-YGFVAFSDPEDFLKAWKEMDGKY 177
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 113 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSGKAK-YGFVAFSDPEDFLKAWK 171
Query: 148 EMN 150
EM+
Sbjct: 172 EMD 174
>gi|390600973|gb|EIN10367.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 217
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F+KY SF KA+V+RD+ +
Sbjct: 91 LRKGGGKIWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSG 150
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 151 KAK-YGFVAFSDPEDFLKAWKEMDGKY 176
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 112 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSGKAK-YGFVAFSDPEDFLKAWK 170
Query: 148 EMN 150
EM+
Sbjct: 171 EMD 173
>gi|392586811|gb|EIW76146.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 215
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L F++Y SF KA+V+RD+ +
Sbjct: 89 LRKGGGKVWEDQTLLEWNSSWFRLFVGDLSNDVSDDVLANAFNQYTSFQKARVIRDRLSQ 148
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GFV+F DP+DF++A KEM+ +
Sbjct: 149 KAK-YGFVAFSDPEDFLKAWKEMDGKY 174
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F++Y SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 110 FRLFVGDLSNDVSDDVLANAFNQYTSFQKARVIRDRLSQKAK-YGFVAFSDPEDFLKAWK 168
Query: 148 EMN 150
EM+
Sbjct: 169 EMD 171
>gi|392568784|gb|EIW61958.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 221
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W +T + N FRLF GDL NDV+D++L FS+Y +F KA+V+RD+ +
Sbjct: 96 LRKGGGKVWEDQTLLEWNPSWFRLFVGDLSNDVSDDVLSNAFSQYATFTKARVIRDRLSG 155
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K FGFV+F DP+DF++A KEM+ +
Sbjct: 156 KAK-FGFVAFSDPEDFLKAWKEMDGKY 181
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L FS+Y +F KA+V+RD+ + K K FGFV+F DP+DF++A K
Sbjct: 117 FRLFVGDLSNDVSDDVLSNAFSQYATFTKARVIRDRLSGKAK-FGFVAFSDPEDFLKAWK 175
Query: 148 EMN 150
EM+
Sbjct: 176 EMD 178
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 31/174 (17%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK +
Sbjct: 70 MSPDSAGGFVRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDK---NS 126
Query: 64 KGF--GFVSFKDPQDFIRANKEMN--------------------------DDFRLFCGDL 95
KGF GFV + DP RA + +N + F +F GDL
Sbjct: 127 KGFNYGFVEYDDPAAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDL 186
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ QD +A M
Sbjct: 187 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSM 240
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 48/68 (70%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ QD +A
Sbjct: 177 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKA 236
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 237 LSSMDGEW 244
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L +DVT++ L FS V RD + +K KGFGFV+F+ P+D RA E+
Sbjct: 223 VYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQ-HKPKGFGFVNFELPEDAERAVNEL 281
Query: 85 ND-DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+D DF DVTDE+LI F Y + AK+++D+ T KGFGFV F +
Sbjct: 282 HDKDF------FAEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEAN 335
Query: 144 RANKEMN 150
RA EMN
Sbjct: 336 RAVAEMN 342
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 31 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
DVTDE+LI F Y + AK+++D+ T KGFGFV F + RA EMN F
Sbjct: 288 AEDVTDEILINNFLPYGTITSAKIMKDESTGAPKGFGFVCFSSSDEANRAVAEMNGRF 345
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L + + +L F S +V RD TN++ G+ ++F PQD A + +
Sbjct: 41 LYVGELAPHIDEAMLKEHFGNVKS---VQVCRDSVTNQSLGYAHINFYTPQDCSAAFENL 97
Query: 85 NDD------FRLFCGD-----------------LGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +RL + L +V ++ L TFS++ + + +V
Sbjct: 98 NHSKIDGTTYRLMISERETTKRVSGAGNIILKNLHPNVDNKSLYDTFSRWGNVISCRVFN 157
Query: 122 DKRTNKTKGFGFVSF 136
KG+GFV++
Sbjct: 158 KLTGGSVKGYGFVNY 172
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 29 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------------- 71
+L +V ++ L TFS++ + + +V KG+GFV++
Sbjct: 130 NLHPNVDNKSLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKM 189
Query: 72 --------------KDPQDFIRANKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLK 116
+ + + N + + F ++ +L +DVT++ L FS
Sbjct: 190 LFGKEVHASHQVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSS 249
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
V RD + +K KGFGFV+F+ P+D RA E+++
Sbjct: 250 VLVQRDDQ-HKPKGFGFVNFELPEDAERAVNELHD 283
>gi|189208127|ref|XP_001940397.1| nucleolysin TIA-1 isoform p40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976490|gb|EDU43116.1| nucleolysin TIA-1 isoform p40 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 470
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 17/154 (11%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK----TKGF--G 67
++ + N L+ G L VT+++L + F K++ DK + +KGF G
Sbjct: 74 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYG 133
Query: 68 FVSFKDPQDF-----------IRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 116
FV + DP I N++ ++ F +F GDL N+V DE+L++ FS + +
Sbjct: 134 FVEYDDPGAAERGMATLNGRRIHNNEDTSNHFHIFVGDLSNEVNDEVLLQAFSTFGPVSE 193
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A+V+ D +T +++G+GFV+F+D D RA M+
Sbjct: 194 ARVMWDMKTGRSRGYGFVAFRDRADADRALSSMD 227
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I + N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+
Sbjct: 155 IHNNEDTSNHFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFR 214
Query: 73 DPQDFIRANKEMNDDF 88
D D RA M+ ++
Sbjct: 215 DRADADRALSSMDGEW 230
>gi|296423176|ref|XP_002841131.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637365|emb|CAZ85322.1| unnamed protein product [Tuber melanosporum]
Length = 498
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 27/163 (16%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+++ + N L+ G L VT+E+L + F K++ DK + K +GF+ +
Sbjct: 76 VRRAAPEPNKRALYVGGLDPRVTEEILKQIFETTGHVQNVKIIPDKNS-KGYNYGFIEYD 134
Query: 73 DPQDFIRANKEMN--------------------------DDFRLFCGDLGNDVTDELLIR 106
DP RA + +N + F +F GDL N+V DE+L++
Sbjct: 135 DPGAAERAMQTLNGRRIHQAEIRVNWAYQSNQSSKEDTTNHFHIFVGDLSNEVNDEVLMQ 194
Query: 107 TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 195 AFSTFGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSM 237
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 174 NHFHIFVGDLSNEVNDEVLMQAFSTFGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKA 233
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 234 LSSMDGEW 241
>gi|110681486|emb|CAL25353.1| ACBF-like dna binding protein [Platanus x acerifolia]
Length = 216
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF--KDPQDF 77
E + ++ GDL + L F+ + KV+R+K+T +++G+GFV F ++ +
Sbjct: 26 EENKTIWVGDLHYWMDGNYLNNCFAHTGEVISIKVIRNKQTGQSEGYGFVEFFSREAAEK 85
Query: 78 IRAN--------------------------KEMNDDFRLFCGDLGNDVTDELLIRTF-SK 110
+ N E D +F GDL +DVTD LL TF S+
Sbjct: 86 VLQNYNGTAMPNTEQPFRLNWASFSMGERRSEAGSDHSIFVGDLSSDVTDTLLQETFASR 145
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 146 YPSVKGAKVVIDANTGRSKGYGFVRFGDDNERSRAISEMN 185
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ E +D +F GDL +DVTD LL TF S+YPS AKVV D T ++KG+GFV F
Sbjct: 113 ERRSEAGSDHSIFVGDLSSDVTDTLLQETFASRYPSVKGAKVVIDANTGRSKGYGFVRFG 172
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 173 DDNERSRAISEMNGAY 188
>gi|212538449|ref|XP_002149380.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
gi|210069122|gb|EEA23213.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
Length = 424
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 27/174 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 72 MSPTSTGGFVRRAAPEPNKRALYIGGLDARVTEDILKQIFETTGHVQSVKIIPDKNFQSK 131
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 132 GMNYGFVEYDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNNTHKEDTSNHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A K M+
Sbjct: 192 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSMD 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A
Sbjct: 181 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKA 240
Query: 81 NKEMNDDF 88
K M+ ++
Sbjct: 241 LKSMDREW 248
>gi|380478106|emb|CCF43782.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 482
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ PG + ++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 68 MSPGSAGGFGRRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KG 126
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 127 YNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSN 186
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 187 EVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 238
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 175 NHFHIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 234
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 235 LSSMDGEW 242
>gi|310798412|gb|EFQ33305.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 482
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ PG + ++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 68 MSPGSAGGFGRRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KG 126
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 127 YNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSN 186
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 187 EVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 238
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 175 NHFHIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 234
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 235 LSSMDGEW 242
>gi|303314025|ref|XP_003067021.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106689|gb|EER24876.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320039295|gb|EFW21229.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides posadasii str. Silveira]
Length = 483
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK + K
Sbjct: 73 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNS-KG 131
Query: 64 KGFGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDLGN 97
+GFV + DP Q IR ANKE ++ F +F GDL N
Sbjct: 132 LNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSN 191
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 243
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LSSMDGEW 247
>gi|359492062|ref|XP_002284337.2| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 409
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
++ GDL N + + L F+ KV+R+K+T ++G+GFV F
Sbjct: 86 IWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGY 145
Query: 72 --------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
P A M D D +F GDL +DV+D LL TF+ KYPS
Sbjct: 146 AGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVK 205
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 206 AAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMN 240
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 43/173 (24%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL +DV+D LL TF+ KYPS AKVV D T ++KG+GFV F D
Sbjct: 169 KRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGD 228
Query: 74 PQDFIRANKEMNDDF------------------------------------RLFCGDLGN 97
+ +A EMN + +F G L
Sbjct: 229 ENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHVQSDGDSMNTTIFVGGLDP 288
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+DE L + FS+Y + K+ KG GFV F + + A +++N
Sbjct: 289 NVSDEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEDALQKLN 335
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
D+ ++ GDL N + + L F+ KV+R+K+T ++G+GFV F
Sbjct: 82 DNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEF 132
>gi|359492060|ref|XP_003634360.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 418
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
++ GDL N + + L F+ KV+R+K+T ++G+GFV F
Sbjct: 86 IWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEFFSHAAAEKVLQGY 145
Query: 72 --------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
P A M D D +F GDL +DV+D LL TF+ KYPS
Sbjct: 146 AGVLMPNTDQPFRLNWATFSMGDKRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVK 205
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 206 AAKVVFDANTGRSKGYGFVRFGDENERSQAMTEMN 240
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 52/182 (28%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL +DV+D LL TF+ KYPS AKVV D T ++KG+GFV F D
Sbjct: 169 KRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGD 228
Query: 74 PQDFIRANKEMNDDF--------------------------------------------- 88
+ +A EMN +
Sbjct: 229 ENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNT 288
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F G L +V+DE L + FS+Y + K+ KG GFV F + + A ++
Sbjct: 289 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEDALQK 342
Query: 149 MN 150
+N
Sbjct: 343 LN 344
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
D+ ++ GDL N + + L F+ KV+R+K+T ++G+GFV F
Sbjct: 82 DNRTIWVGDLHNWMDENYLHSCFAATGELASMKVIRNKQTGSSEGYGFVEF 132
>gi|156058654|ref|XP_001595250.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980]
gi|154701126|gb|EDO00865.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 31/174 (17%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+E+L + F K++ DK +
Sbjct: 70 MSPDSAGGFVRRAAPEPNKRALYVGGLDPRVTEEVLRQIFETTGHVQNVKIIPDK---NS 126
Query: 64 KGF--GFVSFKDPQDFIRANKEMN--------------------------DDFRLFCGDL 95
KGF GFV + DP RA + +N + F +F GDL
Sbjct: 127 KGFNYGFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDL 186
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GF +F++ QD +A M
Sbjct: 187 SNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSM 240
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GF +F++ QD +A
Sbjct: 177 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKA 236
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 237 LSSMDGEW 244
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 32/175 (18%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ PG S + ++T + N L+ G L VT+++L + F K++ DK
Sbjct: 68 MSPGGTSPFGRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK---NA 124
Query: 64 KGF--GFVSFKDP----------------QDFIRAN-----------KEMNDDFRLFCGD 94
KGF GFV + DP Q IR N ++ ++ F +F GD
Sbjct: 125 KGFNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQSANTTTKEDTSNHFHIFVGD 184
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 185 LSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 239
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 16 TCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T ED N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 170 TKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDR 229
Query: 75 QDFIRANKEMNDDF 88
D +A M+ ++
Sbjct: 230 PDAEKALSSMDGEW 243
>gi|361127946|gb|EHK99901.1| putative Nucleolysin TIA-1 [Glarea lozoyensis 74030]
Length = 505
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 31/178 (17%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--- 60
+ P ++++ + N L+ G L VT+++L + F K++ DK
Sbjct: 68 MSPDSAGGFVRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQHVKIIPDKNVGAE 127
Query: 61 NKTKGF--GFVSFKDPQDFIRANKEMN--------------------------DDFRLFC 92
+ KGF GFV + DP RA + +N + F +F
Sbjct: 128 QQAKGFNYGFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFV 187
Query: 93 GDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ QD +A M+
Sbjct: 188 GDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMD 245
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 48/68 (70%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ QD +A
Sbjct: 181 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKA 240
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 241 LSSMDGEW 248
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 73 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSK 132
Query: 63 TKGFGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDLG 96
+GFV + DP Q IR ANKE ++ F +F GDL
Sbjct: 133 GLNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLS 192
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 193 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 182 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 241
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 242 LSSMDGEW 249
>gi|242806685|ref|XP_002484795.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces stipitatus ATCC 10500]
gi|218715420|gb|EED14842.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces stipitatus ATCC 10500]
Length = 482
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 73 MSPTSAGGFVRRAAPEPNKRALYIGGLDARVTEDILKQIFETTGHVQSVKIIPDKNFQSK 132
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 133 GMNYGFVEYDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNNSHKEDTSNHFHIFVGDLS 192
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A K M
Sbjct: 193 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSM 245
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A
Sbjct: 182 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKA 241
Query: 81 NKEMNDDF 88
K M+ ++
Sbjct: 242 LKSMDREW 249
>gi|388505308|gb|AFK40720.1| unknown [Medicago truncatula]
Length = 454
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 34/160 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
++ GDL + + + L F+ AKV+R+K+T +++G+GFV F K Q+F
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 78 --------------------------IRANKEMNDDFRLFCGDLGNDVTDELLIRTF-SK 110
R + E D +F GDL DVTD +L TF SK
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASK 237
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ S AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 238 FSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMN 277
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+++ E +D +F GDL DVTD +L TF SK+ S AKVV D T ++KG+GFV F
Sbjct: 205 RRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFG 264
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D + RA EMN ++C
Sbjct: 265 DESERTRAMTEMNG---VYC 281
>gi|212538447|ref|XP_002149379.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
gi|210069121|gb|EEA23212.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
Length = 482
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 72 MSPTSTGGFVRRAAPEPNKRALYIGGLDARVTEDILKQIFETTGHVQSVKIIPDKNFQSK 131
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 132 GMNYGFVEYDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNNTHKEDTSNHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A K M
Sbjct: 192 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSM 244
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ +D +A
Sbjct: 181 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKA 240
Query: 81 NKEMNDDF 88
K M+ ++
Sbjct: 241 LKSMDREW 248
>gi|356521484|ref|XP_003529385.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 431
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
++ GDL + + + L F+ + AKV+R+K+T +++G+GFV F K Q++
Sbjct: 103 VWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNY 162
Query: 78 ----------------------IRANKEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
R + + D +F GDL DVTD +L TF+ +Y S
Sbjct: 163 NGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSI 222
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 223 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMN 258
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+++ + +D +F GDL DVTD +L TF+ +Y S AKVV D T ++KG+GFV F
Sbjct: 186 RRSSDATSDLSIFVGDLAIDVTDAMLQETFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFG 245
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D + RA EMN ++C
Sbjct: 246 DENERTRAMTEMNG---VYC 262
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 86 DDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
D+ R ++ GDL + + + L F+ + AKV+R+K+T +++G+GFV F + R
Sbjct: 98 DEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEF-----YSR 152
Query: 145 ANKE 148
A E
Sbjct: 153 ATAE 156
>gi|356500047|ref|XP_003518846.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 431
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 31/168 (18%)
Query: 14 KKTCEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF- 71
K+ ++ R ++ GDL + + + L F+ + AKV+R+K+T +++G+GFV F
Sbjct: 90 KQAAASSDEIRTVWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFY 149
Query: 72 ------KDPQDF----------------------IRANKEMNDDFRLFCGDLGNDVTDEL 103
K Q++ R + + D +F GDL DVTD +
Sbjct: 150 SRGTAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSSDATSDLSIFVGDLAIDVTDAM 209
Query: 104 LIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L TF+ +Y S AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 210 LQDTFAGRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMN 257
>gi|343427147|emb|CBQ70675.1| related to RNA-binding protein [Sporisorium reilianum SRZ2]
Length = 281
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
RLF GDLGNDVTD++L F ++PSF KA+VVR K K KG+GFV+F DP+DF+RA K+
Sbjct: 161 RLFVGDLGNDVTDDVLAAAFDRFPSFAKARVVRAK-DGKPKGYGFVAFADPEDFLRAWKQ 219
Query: 84 MNDDF 88
++ +
Sbjct: 220 LDGKY 224
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDLGNDVTD++L F ++PSF KA+VVR K K KG+GFV+F DP+DF+RA K+
Sbjct: 161 RLFVGDLGNDVTDDVLAAAFDRFPSFAKARVVRAK-DGKPKGYGFVAFADPEDFLRAWKQ 219
Query: 149 MN 150
++
Sbjct: 220 LD 221
>gi|356563290|ref|XP_003549897.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 402
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L F+ KV+R+K+T++++G+GF+ F R +
Sbjct: 67 LWIGDLQYWMDENYLYTCFAHTGELASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 126
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N +FRL F GDL DVTD LL TF ++YPS
Sbjct: 127 NGTIMPNGGQNFRLNWATFSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSAK 186
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 187 GAKVVIDRLTGRTKGYGFVRFGDESEQVRAMSEM 220
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D +F GDL DVTD LL TF ++YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 153 DDSPDHTIFVGDLAADVTDYLLQETFRARYPSAKGAKVVIDRLTGRTKGYGFVRFGDESE 212
Query: 77 FIRANKEMN-----------------------------------------DDFRLFCGDL 95
+RA EM ++ +F G+L
Sbjct: 213 QVRAMSEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNL 272
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+VTD+ L + F +Y + K+ KR GFV F D
Sbjct: 273 DPNVTDDHLRQVFGQYGELVHVKIPAGKRC------GFVQFAD 309
>gi|299471920|emb|CBN79601.1| Temporarily Assigned Gene name family member (tag-262) [Ectocarpus
siliculosus]
Length = 528
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW +T + END+RLF GDLGN+VTD+ L F KY SF KAK++R+K K+KG+GF
Sbjct: 400 SWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGF 459
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF D D ++A +E +
Sbjct: 460 VSFLDGMDMLKALREQQGKY 479
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+RLF GDLGN+VTD+ L F KY SF KAK++R+K K+KG+GFVSF D D ++A
Sbjct: 412 NDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKA 471
Query: 146 NKE 148
+E
Sbjct: 472 LRE 474
>gi|356538948|ref|XP_003537962.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA- 80
L+ GDL V + L + F+ + K++R+K T + +G+GFV F + F+R
Sbjct: 12 LWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTY 71
Query: 81 -NKEM-----------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVR 121
+M D +F GDL DVTD LL TF + YPS AKVV
Sbjct: 72 NGAQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVT 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D T ++KG+GFV F D RA EMN
Sbjct: 132 DPATGRSKGYGFVKFADEAQRNRAMTEMN 160
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF + YPS AKVV D T ++KG+GFV F D RA
Sbjct: 96 DHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRA 155
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 156 MTEMNG---VYC 164
>gi|154269845|ref|XP_001535826.1| hypothetical protein HCAG_09244 [Ajellomyces capsulatus NAm1]
gi|150409464|gb|EDN04912.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 387
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK + K
Sbjct: 73 MSPSSTGGFVRRAAPEPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KG 131
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 132 LNYGFVEYDDPGAAERAMSTLNGRRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSN 191
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSM 243
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LSSMDGEW 247
>gi|322708601|gb|EFZ00178.1| RNP domain protein [Metarhizium anisopliae ARSEF 23]
Length = 365
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ F+ + S KA+V+RDKRTNK+KG+GFVSF D DF
Sbjct: 212 DPAHLRLFVGNLAGETTDDSLLKAFAPWKSVQKARVIRDKRTNKSKGYGFVSFSDADDFF 271
Query: 79 RANKEMNDDF 88
A K MN +
Sbjct: 272 NAAKTMNGQY 281
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ F+ + S KA+V+RDKRTNK+KG+GFVSF D DF A K
Sbjct: 216 LRLFVGNLAGETTDDSLLKAFAPWKSVQKARVIRDKRTNKSKGYGFVSFSDADDFFNAAK 275
Query: 148 EMN 150
MN
Sbjct: 276 TMN 278
>gi|119174082|ref|XP_001239402.1| hypothetical protein CIMG_09023 [Coccidioides immitis RS]
Length = 485
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P ++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 73 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNFQSK 132
Query: 63 TKGFGFVSFKDP----------------QDFIR---------ANKE-MNDDFRLFCGDLG 96
+GFV + DP Q IR ANKE ++ F +F GDL
Sbjct: 133 GLNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLS 192
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 193 NEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 245
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 182 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 241
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 242 LSSMDGEW 249
>gi|356538950|ref|XP_003537963.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA- 80
L+ GDL V + L + F+ + K++R+K T + +G+GFV F + F+R
Sbjct: 12 LWIGDLQYWVDESYLSQCFAHNGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTY 71
Query: 81 -NKEM-----------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVR 121
+M D +F GDL DVTD LL TF + YPS AKVV
Sbjct: 72 NGAQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVT 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D T ++KG+GFV F D RA EMN
Sbjct: 132 DPATGRSKGYGFVKFADEAQRNRAMTEMN 160
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF + YPS AKVV D T ++KG+GFV F D RA
Sbjct: 96 DHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFADEAQRNRA 155
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 156 MTEMNG---VYC 164
>gi|357475467|ref|XP_003608019.1| RNA Binding Protein [Medicago truncatula]
gi|355509074|gb|AES90216.1| RNA Binding Protein [Medicago truncatula]
Length = 454
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 34/160 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
++ GDL + + + L F+ AKV+R+K+T +++G+GFV F K Q+F
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 78 --------------------------IRANKEMNDDFRLFCGDLGNDVTDELLIRTF-SK 110
R + E D +F GDL DVTD +L TF SK
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASK 237
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ S AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 238 FSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMN 277
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+++ E +D +F GDL DVTD +L TF SK+ S AKVV D T ++KG+GFV F
Sbjct: 205 RRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFG 264
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D + RA EMN ++C
Sbjct: 265 DESERTRAMTEMNG---VYC 281
>gi|224115306|ref|XP_002316998.1| predicted protein [Populus trichocarpa]
gi|222860063|gb|EEE97610.1| predicted protein [Populus trichocarpa]
Length = 403
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L+ FS ++AKV+R+K+T +G+GF+ F
Sbjct: 71 LWIGDLQQWMDENYLLSIFSATGEIVQAKVIRNKQTGYPEGYGFIEFVSRAAAERILQTY 130
Query: 72 ------KDPQDF------IRANKEMNDD---FRLFCGDLGNDVTDELLIRTFSK-YPSFL 115
Q F + A + DD F +F GDL DV D LL TF YPS
Sbjct: 131 NGTPMPNSEQAFRLNWATLGAGERRQDDGPDFTVFVGDLAADVNDYLLQETFRNVYPSVK 190
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GF+ F D + RA EMN
Sbjct: 191 GAKVVTDRVTGRSKGYGFIRFADENEQRRAMVEMN 225
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 66/163 (40%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D DF +F GDL DV D LL TF YPS AKVV D+ T ++KG+GF+ F D +
Sbjct: 157 DDGPDFTVFVGDLAADVNDYLLQETFRNVYPSVKGAKVVTDRVTGRSKGYGFIRFADENE 216
Query: 77 FIRANKEMNDDF-----------------------------------------RLFCGDL 95
RA EMN + +F G L
Sbjct: 217 QRRAMVEMNGQYCSTRPMRIGPAATKKPLTQQYQKATYQNPQGNQGENDPNNTTIFVGAL 276
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VTD+ L FSKY + K+ KR GFV F +
Sbjct: 277 DPSVTDDTLRAVFSKYGELVHVKIPAGKRC------GFVQFAN 313
>gi|322696870|gb|EFY88656.1| RNP domain protein [Metarhizium acridum CQMa 102]
Length = 364
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF G+L + TD+ L++ F+ + S KA+V+RDKRTNK+KG+GFVSF D DF
Sbjct: 211 DPAHLRLFVGNLAGETTDDSLLKAFAPWKSVQKARVIRDKRTNKSKGYGFVSFSDADDFF 270
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 127
A K MN + + +I K + +KA V++KR+ K
Sbjct: 271 NAAKTMNGQY----------IQSHPVI--VKKANTEIKATNVKEKRSGK 307
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L + TD+ L++ F+ + S KA+V+RDKRTNK+KG+GFVSF D DF A K
Sbjct: 215 LRLFVGNLAGETTDDSLLKAFAPWKSVQKARVIRDKRTNKSKGYGFVSFSDADDFFNAAK 274
Query: 148 EMN 150
MN
Sbjct: 275 TMN 277
>gi|224123466|ref|XP_002330321.1| predicted protein [Populus trichocarpa]
gi|222871356|gb|EEF08487.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------- 71
+E ++ GDL + + + L FS K++R+K+T + +G+GFV F
Sbjct: 61 NEEAKTIWVGDLLHWMDEAYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSRAAAE 120
Query: 72 KDPQDF---IRANKEM-----------------NDDFRLFCGDLGNDVTDELLIRTFS-K 110
K Q + + N E D +F GDL DVTD +L TF+ K
Sbjct: 121 KVLQSYSGSMMPNTEQPFRLNWASFAGERRADPGSDLSIFVGDLAADVTDSMLQETFAGK 180
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 181 YPSVKGAKVVIDSNTGRSKGYGFVRFGDENEKTRAMMEMN 220
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL DVTD +L TF+ KYPS AKVV D T ++KG+GFV F D + R
Sbjct: 155 SDLSIFVGDLAADVTDSMLQETFAGKYPSVKGAKVVIDSNTGRSKGYGFVRFGDENEKTR 214
Query: 80 ANKEMNDDF 88
A EMN F
Sbjct: 215 AMMEMNGAF 223
>gi|388581600|gb|EIM21908.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 165
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
LR G W T D + +RLF G++ NDVT++LL TFSK+ S+ K++VVRDK +N
Sbjct: 41 LRKGAGQQWEDPTLLDWDPSHYRLFVGNISNDVTEQLLDETFSKFKSYTKSRVVRDKISN 100
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K K +GF++F DP+DF++A KE + +
Sbjct: 101 KAK-YGFIAFADPEDFLKAWKEFDGKY 126
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 55/72 (76%), Gaps = 4/72 (5%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
+RLF G++ NDVT++LL TFSK+ S+ K++VVRDK +NK K +GF++F DP+DF++A K
Sbjct: 62 YRLFVGNISNDVTEQLLDETFSKFKSYTKSRVVRDKISNKAK-YGFIAFADPEDFLKAWK 120
Query: 148 EMNEFPHLFVGD 159
EF +VG+
Sbjct: 121 ---EFDGKYVGN 129
>gi|170090948|ref|XP_001876696.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648189|gb|EDR12432.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 213
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 108 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQKAK-YGFVAFSDPEDFLKAWK 166
Query: 83 EMNDDF 88
EM+ +
Sbjct: 167 EMDGKY 172
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GDL NDV+D++L F+KY SF KA+V+RD+ + K K +GFV+F DP+DF++A K
Sbjct: 108 FRLFVGDLSNDVSDDVLANAFNKYTSFQKARVIRDRLSQKAK-YGFVAFSDPEDFLKAWK 166
Query: 148 EMN 150
EM+
Sbjct: 167 EMD 169
>gi|356521983|ref|XP_003529629.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 397
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L + KV+R+K+T++++G+GF+ F
Sbjct: 63 LWIGDLQYWMDENYLYTCLAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTY 122
Query: 74 --------PQDF------IRANKEMNDD---FRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
Q+F + A + +DD +F GDL DVTD LL TF ++YPS
Sbjct: 123 NGTIMPNGGQNFRLNWATLSAGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSIK 182
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 183 GAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEM 216
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D +F GDL DVTD LL TF ++YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 149 DDSPDHTIFVGDLAADVTDYLLQETFRARYPSIKGAKVVIDRLTGRTKGYGFVRFGDESE 208
Query: 77 FIRANKEMN-----------------------------------------DDFRLFCGDL 95
+RA EM ++ +F G+L
Sbjct: 209 QVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNL 268
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+VTD+ L + F Y + K+ KR GFV F D
Sbjct: 269 DPNVTDDHLRQVFGHYGELVHVKIPAGKRC------GFVQFAD 305
>gi|359478387|ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Vitis vinifera]
Length = 438
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 43 LWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAY 102
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF ++YPS
Sbjct: 103 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 162
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T +TKG+GFV F D + RA EMN
Sbjct: 163 GAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
>gi|307105138|gb|EFN53389.1| hypothetical protein CHLNCDRAFT_36600 [Chlorella variabilis]
Length = 321
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 19/141 (13%)
Query: 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
C +LF G L D T+E L FSKY S ++A V+RD++T + +GFGFV+F +P
Sbjct: 3 CCRPTSAKLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRPRGFGFVTFTEPAA 62
Query: 77 F--------------IRANKEMNDDF-----RLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
I A K + + ++F G L D T++ FS++ ++A
Sbjct: 63 ADAVVEDVHVIDGRQIDAKKSVPQEMKPKARKVFVGGLSPDTTEDQFREYFSQFGEVVEA 122
Query: 118 KVVRDKRTNKTKGFGFVSFKD 138
++++D + +++GFGFV+F +
Sbjct: 123 QIMQDHMSGRSRGFGFVTFAE 143
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L D T+E L FSKY S ++A V+RD++T + +GFGFV+F +P
Sbjct: 10 KLFLGGLSWDTTEEKLRDHFSKYGSIVEAVVMRDRQTGRPRGFGFVTFTEP 60
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 43 LWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAY 102
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF ++YPS
Sbjct: 103 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 162
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T +TKG+GFV F D + RA EMN
Sbjct: 163 GAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
>gi|320591602|gb|EFX04041.1| rnp domain containing protein [Grosmannia clavigera kw1407]
Length = 432
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF G+L +VTDE L++ FS++ S KA V RDK T K++G+GFVSF D DF
Sbjct: 279 DPSHLRLFVGNLAGEVTDETLLKAFSRWKSVQKAVVKRDKWTKKSRGYGFVSFSDADDFF 338
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 339 QAAKEMNGKY 348
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF G+L +VTDE L++ FS++ S KA V RDK T K++G+GFVSF D DF +A K
Sbjct: 283 LRLFVGNLAGEVTDETLLKAFSRWKSVQKAVVKRDKWTKKSRGYGFVSFSDADDFFQAAK 342
Query: 148 EMN 150
EMN
Sbjct: 343 EMN 345
>gi|121699358|ref|XP_001267995.1| RNP domain protein [Aspergillus clavatus NRRL 1]
gi|119396137|gb|EAW06569.1| RNP domain protein [Aspergillus clavatus NRRL 1]
Length = 379
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
R G +W T D FRLF G+L +VTD+ L++ F++Y S KA+V+RDKRT
Sbjct: 232 ARSGGGQTWSDSTLLEWDPAHFRLFVGNLAGEVTDDSLLKAFARYESVQKARVIRDKRTQ 291
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF + D+ A +EM +
Sbjct: 292 KSKGYGFVSFSNGDDYFAAAREMQGKY 318
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L++ F++Y S KA+V+RDKRT K+KG+GFVSF + D+ A +
Sbjct: 253 FRLFVGNLAGEVTDDSLLKAFARYESVQKARVIRDKRTQKSKGYGFVSFSNGDDYFAAAR 312
Query: 148 EM 149
EM
Sbjct: 313 EM 314
>gi|297746331|emb|CBI16387.3| unnamed protein product [Vitis vinifera]
Length = 445
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 43 LWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAY 102
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF ++YPS
Sbjct: 103 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 162
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T +TKG+GFV F D + RA EMN
Sbjct: 163 GAKVVTDPNTGRTKGYGFVKFSDEMERNRAMTEMN 197
>gi|320582693|gb|EFW96910.1| RNA binding protein, putative [Ogataea parapolymorpha DL-1]
Length = 154
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF G+LG DV +ELL+R+ KYPS K +V +D + + KG+GFVSF DP D++R K
Sbjct: 65 FRLFVGNLGQDVDEELLLRSLIKYPSVSKVQVPKDHKKGENKGYGFVSFSDPDDYLRCFK 124
Query: 83 EMNDDF 88
EMN +
Sbjct: 125 EMNGKY 130
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 75 QDFIRANKE--MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
QD +A+K FRLF G+LG DV +ELL+R+ KYPS K +V +D + + KG+G
Sbjct: 50 QDIKQASKSDWNPSHFRLFVGNLGQDVDEELLLRSLIKYPSVSKVQVPKDHKKGENKGYG 109
Query: 133 FVSFKDPQDFIRANKEMN 150
FVSF DP D++R KEMN
Sbjct: 110 FVSFSDPDDYLRCFKEMN 127
>gi|296815788|ref|XP_002848231.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
gi|238841256|gb|EEQ30918.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
Length = 507
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 27/174 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P +++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 83 MSPTAAGGYVRRSAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSK 142
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GF+ + DP Q IR N ++ ++ F +F GDL
Sbjct: 143 GLNYGFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSNHFHIFVGDLS 202
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F+D D +A M+
Sbjct: 203 NEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMD 256
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 192 NHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKA 251
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 252 LSSMDGEW 259
>gi|167396275|ref|XP_001741987.1| rrm-containing protein [Entamoeba dispar SAW760]
gi|165893183|gb|EDR21523.1| rrm-containing protein, putative [Entamoeba dispar SAW760]
Length = 148
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 12 WIKKTCEDE--NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W+ ++ D NDFR+F G+LG +V D +L FSKYPS K KVV + TNK+KG+GFV
Sbjct: 38 WVDESMADWPINDFRMFVGNLGKEVDDTMLKIFFSKYPSVQKVKVVVNPHTNKSKGYGFV 97
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF DP +++ A +E+N +
Sbjct: 98 SFSDPNEYLLALRELNGKY 116
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F G+LG +V D +L FSKYPS K KVV + TNK+KG+GFVSF DP +++ A
Sbjct: 49 NDFRMFVGNLGKEVDDTMLKIFFSKYPSVQKVKVVVNPHTNKSKGYGFVSFSDPNEYLLA 108
Query: 146 NKEMN 150
+E+N
Sbjct: 109 LRELN 113
>gi|325089595|gb|EGC42905.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces capsulatus H88]
Length = 492
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK + K
Sbjct: 73 MSPSSTGGFVRRAAPEPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KG 131
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 132 LNYGFVEYDDPGAAERAMSTLNGRRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSN 191
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSM 243
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LSSMDGEW 247
>gi|147859325|emb|CAN83958.1| hypothetical protein VITISV_039907 [Vitis vinifera]
Length = 410
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----- 79
L+ GDL + + FS+ + KV+R+K+T + +G+GF+ R
Sbjct: 77 LWIGDLQPWMEENYXWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTY 136
Query: 80 -----ANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N E N D+ +F GDL +DVTD +L TF YPS
Sbjct: 137 NGTLMPNSEQNFRLNWATLGAGERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVK 196
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 197 GAKVVTDRTTGRSKGYGFVRFGDEGEQLRAMNEMN 231
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 74/162 (45%), Gaps = 43/162 (26%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D D+ +F GDL +DVTD +L TF YPS AKVV D+ T ++KG+GFV F
Sbjct: 159 ERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFG 218
Query: 73 DPQDFIRANKEMNDDF------------------------------------RLFCGDLG 96
D + +RA EMN F +F G L
Sbjct: 219 DEGEQLRAMNEMNGMFCSTRPMRIGPAATKKPVGASFQNTQGXQGESDPNNTTIFVGGLD 278
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++VTD+ L + FS+Y + K+ KR GFV F +
Sbjct: 279 SNVTDDYLRQVFSQYGELVHVKIPVGKRC------GFVQFAN 314
>gi|255718453|ref|XP_002555507.1| KLTH0G10912p [Lachancea thermotolerans]
gi|238936891|emb|CAR25070.1| KLTH0G10912p [Lachancea thermotolerans CBS 6340]
Length = 436
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-- 76
+ +D L+ G+L VT+E+L + F S K++ DK NK + FV F P D
Sbjct: 63 ETSDRILYVGNLDLAVTEEMLKQYFQVGGSIANVKILMDK-NNKQANYAFVEFHQPHDAN 121
Query: 77 ---------------------FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
F D F LF GDL DV DE L RTF P+F+
Sbjct: 122 VAFQTLDGKQIENHVIKINWAFQSQQVSSEDTFNLFVGDLNVDVDDETLARTFKDIPTFI 181
Query: 116 KAKVVRDKRTNKTKGFGFVSFKD 138
+A V+ D +T +++G+GFVSF +
Sbjct: 182 QAHVMWDMQTGRSRGYGFVSFGE 204
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+ E+ F LF GDL DV DE L RTF P+F++A V+ D +T +++G+GFVSF
Sbjct: 146 QQVSSEDTFNLFVGDLNVDVDDETLARTFKDIPTFIQAHVMWDMQTGRSRGYGFVSFG-- 203
Query: 75 QDFIRANKEMNDD 87
+ +A K M D+
Sbjct: 204 -EQTQAQKAMEDN 215
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 74 PQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
P + R +E +D L+ G+L VT+E+L + F S K++ DK NK + F
Sbjct: 54 PANASRGGRETSDRI-LYVGNLDLAVTEEMLKQYFQVGGSIANVKILMDK-NNKQANYAF 111
Query: 134 VSFKDPQD 141
V F P D
Sbjct: 112 VEFHQPHD 119
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 28/169 (16%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P ++ ++T + N L+ G L VT+++L + F K++ DK K +G
Sbjct: 70 PGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYG 128
Query: 68 FVSFKDP----------------QDFIRAN-----------KEMNDDFRLFCGDLGNDVT 100
FV + DP Q IR N ++ ++ F +F GDL N+V
Sbjct: 129 FVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVN 188
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 189 DEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 13 IKKTCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
T ED N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F
Sbjct: 165 TSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAF 224
Query: 72 KDPQDFIRANKEMNDDF 88
+D D +A M+ ++
Sbjct: 225 RDRSDAEKALSSMDGEW 241
>gi|302792090|ref|XP_002977811.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
gi|300154514|gb|EFJ21149.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
Length = 455
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L F+ L AKV+R+K+T +G+GF+ F
Sbjct: 30 LWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAERVLLAY 89
Query: 74 -----PQ----------DFIRANKEMN--DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
PQ F K M+ + +F GDL DVTD +L TF +++PS
Sbjct: 90 NGTQMPQTEQAFRLNWASFGMGEKRMDGGPELSIFVGDLAPDVTDYMLHETFRTRFPSVR 149
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 150 GAKVVIDAVTGRSKGYGFVRFADENERARAMSEMN 184
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF +++PS AKVV D T ++KG+GFV F D + RA
Sbjct: 120 ELSIFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARA 179
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 180 MSEMNG---VYC 188
>gi|225682885|gb|EEH21169.1| nucleolysin TIA-1 [Paracoccidioides brasiliensis Pb03]
Length = 471
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK + K
Sbjct: 81 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNS-KG 139
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 140 LNYGFVEYDDPGAAERAMATLNGRRVHQSEIRVNWAYQSNSNNKEDTSNHFHIFVGDLSN 199
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 200 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSM 251
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 187 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEK 246
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 247 ALSSMDGEW 255
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK + K
Sbjct: 73 MSPTSTGGFVRRAAPEPNKRALYIGGLDARVTEDILRQIFETTGHVQSVKIIPDKNS-KG 131
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 132 LNYGFVEYDDPGAAERAMATLNGRRVHQSEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSN 191
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 192 EVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSM 243
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 180 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKA 239
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 240 LSSMDGEW 247
>gi|255642249|gb|ACU21389.1| unknown [Glycine max]
Length = 452
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F K++R ++++ +GFV + D
Sbjct: 57 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 112
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN D F +F GDL +VTD L FS YPS A+V+
Sbjct: 113 HGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 172
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF+D QD A +N+ ++G+ + R + KG
Sbjct: 173 WDHKTGRSKGYGFVSFRDHQD---AQSAINDMTGKWLGNRQIRCNWATKG 219
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL +VTD L FS YPS A+V+ D +T ++KG+GFVSF+D QD A
Sbjct: 140 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 199
Query: 83 EMNDDF 88
+M +
Sbjct: 200 DMTGKW 205
>gi|449488366|ref|XP_004158014.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 260
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 27/153 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + F+ KV+R+K+T +++G+GF+ F
Sbjct: 68 LWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTY 127
Query: 72 ------KDPQDF----IRANKEMND---DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKA 117
Q+F A ++ D D+ +F GDL DVTD +L TF ++Y S A
Sbjct: 128 NGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGA 187
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KVV D+ T +TKG+GFV F D + IRA EMN
Sbjct: 188 KVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMN 220
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DVTD +L TF ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 148 EKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFG 207
Query: 73 DPQDFIRANKEMN 85
D + IRA EMN
Sbjct: 208 DESEQIRAMTEMN 220
>gi|302795494|ref|XP_002979510.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
gi|300152758|gb|EFJ19399.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
Length = 432
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L F+ L AKV+R+K+T +G+GF+ F
Sbjct: 30 LWIGDLQYWMDENYLRNLFAHTGEVLSAKVIRNKQTGYPEGYGFIEFNSHPAAERVLLAY 89
Query: 74 -----PQ----------DFIRANKEMN--DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
PQ F K M+ + +F GDL DVTD +L TF +++PS
Sbjct: 90 NGTQMPQTEQAFRLNWASFGMGEKRMDGGPELSIFVGDLAPDVTDYMLHETFRTRFPSVR 149
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 150 GAKVVIDAVTGRSKGYGFVRFADENERARAMSEMN 184
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF +++PS AKVV D T ++KG+GFV F D + RA
Sbjct: 120 ELSIFVGDLAPDVTDYMLHETFRTRFPSVRGAKVVIDAVTGRSKGYGFVRFADENERARA 179
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 180 MSEMNG---VYC 188
>gi|401887099|gb|EJT51104.1| response to unfolded-protein [Trichosporon asahii var. asahii CBS
2479]
Length = 715
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 49/66 (74%), Gaps = 3/66 (4%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
+RLF GD+ NDV++ L F+KYPS+ K KVVRD+ + K +GF++FKDP+DF+RA K
Sbjct: 125 YRLFVGDVSNDVSERTLDEAFNKYPSYCKCKVVRDRLSQK---YGFIAFKDPEDFLRAWK 181
Query: 83 EMNDDF 88
EM+ +
Sbjct: 182 EMDGKY 187
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
+RLF GD+ NDV++ L F+KYPS+ K KVVRD+ + K +GF++FKDP+DF+RA K
Sbjct: 125 YRLFVGDVSNDVSERTLDEAFNKYPSYCKCKVVRDRLSQK---YGFIAFKDPEDFLRAWK 181
Query: 148 EMN 150
EM+
Sbjct: 182 EMD 184
>gi|255073999|ref|XP_002500674.1| predicted protein [Micromonas sp. RCC299]
gi|226515937|gb|ACO61932.1| predicted protein [Micromonas sp. RCC299]
Length = 440
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 32/161 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDLG + + L F+ + + K++R+K+T ++G+GFV F D A K +
Sbjct: 15 LWVGDLGYWMEESYLHTCFAHFGAIGSVKIIRNKQTGFSEGYGFVEFVDRATAEHALKTL 74
Query: 85 N-------------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYP 112
N +D +F GDL +V D L TF+ +YP
Sbjct: 75 NGTPMPSAHQNFRLNWASFGVGGGAGGAGGAANDHSVFVGDLPPEVNDYALQETFAERYP 134
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
S A+VV D T ++KGFGFV F D + RA EMN P
Sbjct: 135 SVRNARVVTDPNTGRSKGFGFVRFGDEGERDRALVEMNGVP 175
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ND +F GDL +V D L TF+ +YPS A+VV D T ++KGFGFV F D + R
Sbjct: 107 NDHSVFVGDLPPEVNDYALQETFAERYPSVRNARVVTDPNTGRSKGFGFVRFGDEGERDR 166
Query: 80 ANKEMNDDFRLFCGD 94
A EMN + CG
Sbjct: 167 ALVEMNG---VPCGS 178
>gi|225428741|ref|XP_002285031.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 416
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 43/163 (26%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA---KVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
L+ GDL + D+ +RT + +K K++R+K+T +++G+GFV F F RA
Sbjct: 83 LWVGDL-HQWMDDNYLRTCFGHTGEVKVSSIKIIRNKQTGQSEGYGFVEF-----FSRAT 136
Query: 82 KE---------------------------------MNDDFRLFCGDLGNDVTDELLIRTF 108
E D +F GDL +DVTD LL TF
Sbjct: 137 AEKILHSYNGTLMPNTEQPFRLNWATFSTGDRRTDAGSDLSIFVGDLASDVTDALLQETF 196
Query: 109 S-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ +YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 197 ATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRAMNEMN 239
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DVTD LL TF+ +YPS AKVV D T ++KG+GFV F D + R
Sbjct: 174 SDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSR 233
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 234 AMNEMNG---IYC 243
>gi|356515545|ref|XP_003526460.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 435
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F K++R ++++ +GFV + D
Sbjct: 58 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 113
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN D F +F GDL +VTD L FS YPS A+V+
Sbjct: 114 HGRQLYGQALKVNWAYANSSREDTTGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 173
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF+D QD A +N+ ++G+ + R + KG
Sbjct: 174 WDHKTGRSKGYGFVSFRDHQD---AQSAINDMTGKWLGNRQIRCNWATKG 220
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 61/171 (35%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA-- 80
F +F GDL +VTD L FS YPS A+V+ D +T ++KG+GFVSF+D QD A
Sbjct: 141 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 200
Query: 81 -------------------------NKEMNDDFR-------------------------- 89
N+E N+D +
Sbjct: 201 DMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDSQNAVMLTNGSSDGGQDNNNEDAPENNP 260
Query: 90 ----LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
++ G+L +DVT L F L A V+ + R + KGFGF+ +
Sbjct: 261 SYTTVYVGNLPHDVTQAELHCQFHA----LGAGVIEEVRVQRDKGFGFIRY 307
>gi|255647186|gb|ACU24061.1| unknown [Glycine max]
Length = 435
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F K++R ++++ +GFV + D
Sbjct: 58 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 113
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN D F +F GDL +VTD L FS YPS A+V+
Sbjct: 114 HGRQLYGQALKVNWAYANSSREDTTGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 173
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF+D QD A +N+ ++G+ + R + KG
Sbjct: 174 WDHKTGRSKGYGFVSFRDHQD---AQSAINDMTGKWLGNRQIRCNWATKG 220
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 61/171 (35%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA-- 80
F +F GDL +VTD L FS YPS A+V+ D +T ++KG+GFVSF+D QD A
Sbjct: 141 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 200
Query: 81 -------------------------NKEMNDDFR-------------------------- 89
N+E N+D +
Sbjct: 201 DMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDSQNAVMLTNGSSDGGQDNNNEDAPENNP 260
Query: 90 ----LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
++ G+L +DVT L F L A V+ + R + KGFGF+ +
Sbjct: 261 SYTTVYVGNLPHDVTQAELHCQFHA----LGAGVIEEVRVQRDKGFGFIRY 307
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 29/161 (18%)
Query: 19 DENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP--- 74
+ N+ R L+ GDL + + L F + AKV+R+K+T +++G+GF+ F+
Sbjct: 79 NPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAA 138
Query: 75 ----QDF-------IRANKEMN-------------DDFRLFCGDLGNDVTDELLIRTF-S 109
Q + + N MN + +F GDL DVTD +L TF S
Sbjct: 139 ETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKS 198
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 199 VYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMN 239
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 67/160 (41%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D + +F GDL DVTD +L TF S Y S AKVV D+ T ++KG+GFV F D +
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
+RA EMN ++ +F G L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
V +E L + FS Y + K+V KR GFV F
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRC------GFVQF 324
>gi|449454730|ref|XP_004145107.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
gi|449472157|ref|XP_004153511.1| PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis
sativus]
Length = 408
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 27/153 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + F+ KV+R+K+T +++G+GF+ F
Sbjct: 68 LWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTY 127
Query: 72 ------KDPQDF----IRANKEMND---DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKA 117
Q+F A ++ D D+ +F GDL DVTD +L TF ++Y S A
Sbjct: 128 NGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGA 187
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KVV D+ T +TKG+GFV F D + IRA EMN
Sbjct: 188 KVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMN 220
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DVTD +L TF ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 148 EKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFG 207
Query: 73 DPQDFIRANKEMN------------------------------------------DDFRL 90
D + IRA EMN ++ +
Sbjct: 208 DESEQIRAMTEMNGVHCSSRPMRIGPAANKNTSGSQQFSKTSYQNPPGTQNENDPNNTTI 267
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G+L ++VTDE L + FS+Y + K+ KR GFV F D
Sbjct: 268 FVGNLDSNVTDEHLRQVFSQYGELVHVKIPAGKRC------GFVQFSD 309
>gi|297852632|ref|XP_002894197.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
gi|297340039|gb|EFH70456.1| hypothetical protein ARALYDRAFT_474095 [Arabidopsis lyrata subsp.
lyrata]
Length = 450
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + L FS KV+R+K+T +++G+GFV F
Sbjct: 126 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 185
Query: 72 -----KDPQDFIRAN-----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ + R N E D +F GDL DV+D +L+ TF+ +YPS
Sbjct: 186 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 245
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 246 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 281
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 77/186 (41%), Gaps = 55/186 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 209 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 268
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN F
Sbjct: 269 DENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSLSDGE 328
Query: 89 ----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+F G L DVT+E L++ FS++ + K+ KG GFV F + Q
Sbjct: 329 SNNSTIFVGGLDADVTEEDLMQPFSQFGEVVSVKIPVG------KGCGFVQFANRQSAEE 382
Query: 145 ANKEMN 150
A +N
Sbjct: 383 AIGNLN 388
>gi|9294614|dbj|BAB02953.1| DNA/RNA binding protein-like [Arabidopsis thaliana]
Length = 489
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + + L FS KV+R+K T++++G+GFV F ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 75 QDFIRANK-------------------EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ N E D +F GDL DVTD LL TFS +YPS
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 193 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 253 DENERSRALTEMNGAY 268
>gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA binding protein [Arabidopsis thaliana]
Length = 468
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + L FS KV+R+K+T +++G+GFV F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 72 -----KDPQDFIRAN-----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ + R N E D +F GDL DV+D +L+ TF+ +YPS
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN F
Sbjct: 264 DENERSRAMTEMNGAF 279
>gi|302794528|ref|XP_002979028.1| hypothetical protein SELMODRAFT_418663 [Selaginella moellendorffii]
gi|302806386|ref|XP_002984943.1| hypothetical protein SELMODRAFT_424039 [Selaginella moellendorffii]
gi|300147529|gb|EFJ14193.1| hypothetical protein SELMODRAFT_424039 [Selaginella moellendorffii]
gi|300153346|gb|EFJ19985.1| hypothetical protein SELMODRAFT_418663 [Selaginella moellendorffii]
Length = 408
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L FS + AK++R+K + +G+GFV F
Sbjct: 22 LWVGDLQYWMDESYLNSIFSSTGELVSAKIIRNKASGFPEGYGFVEFASHACAERVLTAF 81
Query: 74 -----PQ--DFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
PQ R N E + +F GDL DVTD +L TF ++YPS
Sbjct: 82 TGTQMPQTEQLFRLNWAYFGIGERRPEGGPENSIFVGDLAPDVTDYMLQETFRTRYPSVR 141
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +RA EMN
Sbjct: 142 GAKVVTDVATGRSKGYGFVRFADDSERVRAMSEMN 176
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 25 LFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+F GDL DVTD +L TF ++YPS AKVV D T ++KG+GFV F D + +RA E
Sbjct: 115 IFVGDLAPDVTDYMLQETFRTRYPSVRGAKVVTDVATGRSKGYGFVRFADDSERVRAMSE 174
Query: 84 MNDDFRLFC 92
MN ++C
Sbjct: 175 MNG---IYC 180
>gi|356541995|ref|XP_003539457.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 401
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA- 80
L+ GDL V + L + F+ + K++R+K T + +G+GFV F + F+R
Sbjct: 12 LWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTF 71
Query: 81 -NKEM-----------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVR 121
+M D +F GDL DVTD +L TF + YPS +KVV
Sbjct: 72 NGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVT 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D T ++KG+GFV F D RA EMN
Sbjct: 132 DPATGRSKGYGFVKFADEAQRNRAMTEMN 160
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD +L TF + YPS +KVV D T ++KG+GFV F D RA
Sbjct: 96 DHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRA 155
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 156 MTEMNG---VYC 164
>gi|15222783|ref|NP_175383.1| RNA-binding protein 47A [Arabidopsis thaliana]
gi|378522727|sp|F4I3B3.1|RB47A_ARATH RecName: Full=Polyadenylate-binding protein RBP47A;
Short=Poly(A)-binding protein RBP47A; AltName:
Full=RNA-binding protein 47A; Short=AtRBP47A
gi|332194327|gb|AEE32448.1| RNA-binding protein 47A [Arabidopsis thaliana]
Length = 445
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + L FS KV+R+K+T +++G+GFV F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 72 -----KDPQDFIRAN-----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ + R N E D +F GDL DV+D +L+ TF+ +YPS
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 76/186 (40%), Gaps = 55/186 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN F
Sbjct: 264 DENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGE 323
Query: 89 ----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+F G L DVT+E L++ FS + + K+ KG GFV F + Q
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEE 377
Query: 145 ANKEMN 150
A +N
Sbjct: 378 AIGNLN 383
>gi|84453184|dbj|BAE71189.1| putative DNA binding protein [Trifolium pratense]
Length = 253
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L + FS KV+R+K+TN+++G+GF+ F R ++
Sbjct: 70 LWIGDLQYWMDENYLYQCFSHTGEVGNVKVIRNKQTNQSEGYGFLEFTSRAGAERILQQY 129
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N DF +F GDL DVTD L F ++Y S
Sbjct: 130 NGNIMPNGGQNFRLNWATFSSGEKRHDDSPDFTIFVGDLAADVTDYHLTEVFRTRYNSVK 189
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 190 GAKVVIDRTTGRTKGYGFVRFADEGEQMRAMSEM 223
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D DF +F GDL DVTD L F ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 152 EKRHDDSPDFTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 211
Query: 73 DPQDFIRANKEM 84
D + +RA EM
Sbjct: 212 DEGEQMRAMSEM 223
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 27/151 (17%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+E+L + F K++ DK + +GFV + D
Sbjct: 75 RRAAPEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNA-RGYNYGFVEYDD 133
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V DE+L++
Sbjct: 134 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVNDEVLLQA 193
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 194 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 224
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 172 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKA 231
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 232 LSSMDGEW 239
>gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsis thaliana]
gi|122246579|sp|Q0WW84.1|RB47B_ARATH RecName: Full=Polyadenylate-binding protein RBP47B;
Short=Poly(A)-binding protein RBP47B; AltName:
Full=RNA-binding protein 47B; Short=AtRBP47B
gi|110741040|dbj|BAE98614.1| putative nuclear acid binding protein [Arabidopsis thaliana]
gi|111074446|gb|ABH04596.1| At3g19130 [Arabidopsis thaliana]
gi|332642675|gb|AEE76196.1| RNA-binding protein 47B [Arabidopsis thaliana]
Length = 435
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + + L FS KV+R+K T++++G+GFV F ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 75 QDFIRANK-------------------EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ N E D +F GDL DVTD LL TFS +YPS
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 193 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 253 DENERSRALTEMNGAY 268
>gi|125586872|gb|EAZ27536.1| hypothetical protein OsJ_11491 [Oryza sativa Japonica Group]
Length = 257
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + AK++R+K+T + +G+GF+ F Q
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF + Y S
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 188
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 189 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMN 223
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF + Y S AKVV D+ T ++KG+GFV F
Sbjct: 151 EKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFG 210
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 211 DLDEQTRAMTEMNGQY 226
>gi|356541997|ref|XP_003539458.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA- 80
L+ GDL V + L + F+ + K++R+K T + +G+GFV F + F+R
Sbjct: 12 LWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKLTGQPEGYGFVEFVSHASAEAFLRTF 71
Query: 81 -NKEM-----------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVR 121
+M D +F GDL DVTD +L TF + YPS +KVV
Sbjct: 72 NGAQMPGTDQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVT 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D T ++KG+GFV F D RA EMN
Sbjct: 132 DPATGRSKGYGFVKFADEAQRNRAMTEMN 160
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD +L TF + YPS +KVV D T ++KG+GFV F D RA
Sbjct: 96 DHSIFVGDLAPDVTDFILQETFRAHYPSVKGSKVVTDPATGRSKGYGFVKFADEAQRNRA 155
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 156 MTEMNG---VYC 164
>gi|356519168|ref|XP_003528246.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 410
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
++ GDL + + + L R F+ KV+R+K+T ++G+GFV F ++
Sbjct: 80 VWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNY 139
Query: 75 QDFIRANKEMN------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
+ N E D +F GDL DVTD +L TFS +YPS
Sbjct: 140 AGILMPNTEQPFRLNWATFGTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVK 199
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 200 AAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMN 234
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 40/138 (28%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD +L TFS +YPS AKVV D T ++KG+GFV F D + +A
Sbjct: 170 DLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQA 229
Query: 81 NKEMNDDF---------------------------------------RLFCGDLGNDVTD 101
EMN + +F G L ++VT
Sbjct: 230 MTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTA 289
Query: 102 ELLIRTFSKYPSFLKAKV 119
E L + FS+Y + K+
Sbjct: 290 EDLKQPFSQYGEIVSVKI 307
>gi|222640040|gb|EEE68172.1| hypothetical protein OsJ_26296 [Oryza sativa Japonica Group]
Length = 329
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 26/134 (19%)
Query: 43 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-----------------------DFIR 79
F+ K++RDK+T + +G+GF+ F ++
Sbjct: 10 FAPTGELQSVKLIRDKQTGQLQGYGFIEFTSHAGAERVLQTYNGAMMPNVEQTYRLNWAS 69
Query: 80 ANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSF 136
A ++ +D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F
Sbjct: 70 AGEKRDDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKF 129
Query: 137 KDPQDFIRANKEMN 150
DP + RA EMN
Sbjct: 130 GDPSEQARAMTEMN 143
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 69/160 (43%), Gaps = 45/160 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD +L TF YPS AKVV DK T ++KG+GFV F DP +
Sbjct: 75 DDTPDYTIFVGDLAADVTDYILQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPSE 134
Query: 77 FIRANKEMN--------------------------------------DDFRLFCGDLGND 98
RA EMN + +F G L
Sbjct: 135 QARAMTEMNGMVCSSRPMRIGPAANKKATGVQEKVPSAQGVQSDSDPSNTTIFVGGLDPS 194
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VTD++L + F+ Y + K+ KR GFV F +
Sbjct: 195 VTDDMLKQVFTPYGDVVHVKIPVGKRC------GFVQFAN 228
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P + ++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 67 MSPSSAGGFGRRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KG 125
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 126 YNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTSSKEDTSNHFHIFVGDLSN 185
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 186 EVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 237
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 174 NHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 233
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 234 LSSMDGEW 241
>gi|297799290|ref|XP_002867529.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
gi|297313365|gb|EFH43788.1| hypothetical protein ARALYDRAFT_913848 [Arabidopsis lyrata subsp.
lyrata]
Length = 418
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L+ FS AKV+R+K++ ++G+GF+ F + R +
Sbjct: 83 LWIGDLQPWMEENYLMNIFSLTGDATSAKVIRNKQSGYSEGYGFIEFVNHATAERILQAY 142
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD +L TF + Y S
Sbjct: 143 NGTTMPSSDQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 202
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + IRA EMN
Sbjct: 203 GAKVVTDRTTGRSKGYGFVRFGDESEQIRAMTEMN 237
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF + Y S AKVV D+ T ++KG+GFV F D + IRA
Sbjct: 173 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQIRA 232
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 233 MTEMNGQY 240
>gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putative [Arabidopsis thaliana]
Length = 392
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + + L FS KV+R+K T++++G+GFV F ++
Sbjct: 67 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 126
Query: 75 QDFIRANK-------------------EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ N E D +F GDL DVTD LL TFS +YPS
Sbjct: 127 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 186
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 187 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 222
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 150 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 209
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 210 DENERSRALTEMNGAY 225
>gi|315052890|ref|XP_003175819.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
gi|311341134|gb|EFR00337.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
Length = 506
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 31/177 (17%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-- 61
+ P +++++ + N L+ G L VT+++L + F K++ DK +
Sbjct: 78 MSPTAAGGYVRRSAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNASAQ 137
Query: 62 -KTKG--FGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFC 92
++KG +GF+ + DP Q IR N ++ + F +F
Sbjct: 138 FQSKGLNYGFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFV 197
Query: 93 GDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 198 GDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 254
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ F +F GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 191 SHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 250
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 251 LSSMDGEW 258
>gi|406695172|gb|EKC98485.1| response to unfolded-protein [Trichosporon asahii var. asahii CBS
8904]
Length = 689
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D +RLF GD+ NDV++ L F+KYPS+ K KVVRD+ + K +GF++FKDP+DF+
Sbjct: 178 DPKWYRLFVGDVSNDVSERTLDEAFNKYPSYCKCKVVRDRLSQK---YGFIAFKDPEDFL 234
Query: 79 RANKEMNDDF 88
RA KEM+ +
Sbjct: 235 RAWKEMDGKY 244
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
+RLF GD+ NDV++ L F+KYPS+ K KVVRD+ + K +GF++FKDP+DF+RA K
Sbjct: 182 YRLFVGDVSNDVSERTLDEAFNKYPSYCKCKVVRDRLSQK---YGFIAFKDPEDFLRAWK 238
Query: 148 EMN 150
EM+
Sbjct: 239 EMD 241
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ PG + + ++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 71 MSPGSGAPFGRRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNA-KG 129
Query: 64 KGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGN 97
+GFV + DP Q IR N ++ ++ F +F GDL N
Sbjct: 130 YNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSN 189
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+V DE+L + FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 190 EVNDEVLFQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 241
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 178 NHFHIFVGDLSNEVNDEVLFQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKA 237
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 238 LSSMDGEW 245
>gi|12583812|gb|AAG59664.1|AC084319_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709397|gb|ABF97192.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215678704|dbj|BAG95141.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 402
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + AK++R+K+T + +G+GF+ F Q
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF + Y S
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 188
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 189 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMN 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF + Y S AKVV D+ T ++KG+GFV F
Sbjct: 151 EKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFG 210
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + RA EMN + +
Sbjct: 211 DLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTV 270
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L VTDE+L + FS Y + K+ KR GFV + +
Sbjct: 271 FVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSN 312
>gi|449469386|ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
sativus]
Length = 422
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF ++YPS
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 141
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 142 GAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMN 176
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD LL TF ++YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 112 EHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRA 171
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 172 MSEMNG---VYC 180
>gi|449454734|ref|XP_004145109.1| PREDICTED: polyadenylate-binding protein RBP45B-like [Cucumis
sativus]
Length = 404
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 27/153 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + F+ KV+R+K+T +++G+GF+ F
Sbjct: 68 LWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTY 127
Query: 72 ------KDPQDF----IRANKEMND---DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKA 117
Q+F A ++ D D+ +F GDL DVTD +L TF ++Y S A
Sbjct: 128 NGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGA 187
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KVV D+ T +TKG+GFV F D + +RA EMN
Sbjct: 188 KVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMN 220
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DVTD +L TF ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 148 EKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFG 207
Query: 73 DPQDFIRANKEMN------------------------------------------DDFRL 90
D + +RA EMN ++ +
Sbjct: 208 DESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSGGQQFSKTSYQNPQGAQNENDPNNTTI 267
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G+L +VTDE L + F +Y + K+ KR GFV F D
Sbjct: 268 FVGNLDANVTDEHLRQVFGQYGELVHVKIPVGKRC------GFVQFAD 309
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 30/155 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L F+ KV+R+K+T++++G+GF+ F
Sbjct: 68 LWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 127
Query: 74 --------PQDF----------IRANKEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSF 114
Q F R+ + + D+ +F GDL DVTD LL TF ++Y S
Sbjct: 128 NGAIMPNGGQSFRLNWATFSAGERSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSV 187
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 188 KGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEM 222
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 72/165 (43%), Gaps = 50/165 (30%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF ++Y S AKVV D+ T +TKG+GFV F D +
Sbjct: 155 DDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESE 214
Query: 77 FIRANKEMN-------------------------------------------DDFRLFCG 93
+RA EM ++ +F G
Sbjct: 215 QVRAMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVG 274
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+L +VTD+ L + FS+Y + K+ KR GFV F D
Sbjct: 275 NLDPNVTDDHLRQVFSQYGELVHVKIPAGKRC------GFVQFAD 313
>gi|108709398|gb|ABF97193.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + AK++R+K+T + +G+GF+ F Q
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF + Y S
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 188
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 189 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMN 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF + Y S AKVV D+ T ++KG+GFV F
Sbjct: 151 EKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFG 210
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + RA EMN + +
Sbjct: 211 DLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTV 270
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L VTDE+L + FS Y + K+ KR GFV + +
Sbjct: 271 FVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSN 312
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542179|gb|EEF43723.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 438
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 28/159 (17%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------K 72
E+ ++ GDL + + + L FS KV+R+K+T + +G+GF+ F K
Sbjct: 103 EDSKTIWVGDLLHWMDETYLHSCFSHTGEVTSVKVIRNKQTGQPEGYGFIEFYSHATAEK 162
Query: 73 DPQDF-----------IRAN---------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKY 111
Q++ R N E D +F GDL DVTD +L TF SKY
Sbjct: 163 VLQNYNGSMMPNADQPFRLNWASFAGERRTETGSDLSIFVGDLAADVTDAMLQETFSSKY 222
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 223 LSVKGAKVVTDLNTGRSKGYGFVRFGDENERSRAMMEMN 261
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 60/179 (33%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ E +D +F GDL DVTD +L TFS KY S AKVV D T ++KG+GFV F
Sbjct: 189 ERRTETGSDLSIFVGDLAADVTDAMLQETFSSKYLSVKGAKVVTDLNTGRSKGYGFVRFG 248
Query: 73 DPQDFIRANKEMN----------------------------------------------- 85
D + RA EMN
Sbjct: 249 DENERSRAMMEMNGVYCSSRPMRIGVATPKKSPAYQQQYSSQALVLAGGHAPNGSMAQGS 308
Query: 86 ------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++ +F G + +D++DE L + FS++ + K+ KG GFV F D
Sbjct: 309 QSDGDSNNTTIFVGGIDSDISDEDLRQPFSQFGEVVSVKIP------AGKGCGFVQFAD 361
>gi|218193173|gb|EEC75600.1| hypothetical protein OsI_12307 [Oryza sativa Indica Group]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + AK++R+K+T + +G+GF+ F Q
Sbjct: 69 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 128
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF + Y S
Sbjct: 129 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 188
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 189 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMN 223
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF + Y S AKVV D+ T ++KG+GFV F
Sbjct: 151 EKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFG 210
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + RA EMN + +
Sbjct: 211 DLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTV 270
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L VTDE+L + FS Y + K+ KR GFV + +
Sbjct: 271 FVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSN 312
>gi|194703366|gb|ACF85767.1| unknown [Zea mays]
Length = 420
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P P SS +EN ++ GDL + + L F + KV+R+++T +++G
Sbjct: 83 PTPPSSGSGGNGCEENK-TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEG 141
Query: 66 FGFVSF-------KDPQDFI---------------------RANKEMNDDFRLFCGDLGN 97
+GFV F K Q+F E+ D +F GDL
Sbjct: 142 YGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAA 201
Query: 98 DVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DVTDE+L+ FS KY S AKV+ D T +++G+GFV F D D A EMN
Sbjct: 202 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMN 255
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +D +F GDL DVTDE+L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 183 EKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFG 242
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D D A EMN ++C
Sbjct: 243 DDNDKSHAMSEMNG---VYC 259
>gi|449513289|ref|XP_004164285.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
RBP47B'-like [Cucumis sativus]
Length = 427
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 22 LWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQTY 81
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF ++YPS
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVR 141
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 142 GAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMN 176
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD LL TF ++YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 112 EHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRA 171
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 172 MSEMNGXY 179
>gi|226495169|ref|NP_001150649.1| nucleic acid binding protein [Zea mays]
gi|195640856|gb|ACG39896.1| nucleic acid binding protein [Zea mays]
Length = 420
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P P SS +EN ++ GDL + + L F + KV+R+++T +++G
Sbjct: 83 PTPPSSGSGGNGCEENK-TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEG 141
Query: 66 FGFVSF-------KDPQDFI---------------------RANKEMNDDFRLFCGDLGN 97
+GFV F K Q+F E+ D +F GDL
Sbjct: 142 YGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAA 201
Query: 98 DVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DVTDE+L+ FS KY S AKV+ D T +++G+GFV F D D A EMN
Sbjct: 202 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMN 255
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +D +F GDL DVTDE+L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 183 EKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFG 242
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D D A EMN ++C
Sbjct: 243 DDNDKSHAMSEMNG---VYC 259
>gi|255554923|ref|XP_002518499.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542344|gb|EEF43886.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 430
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 72/154 (46%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----- 79
L+ GDL + + + F+ KV+R+K+T + +G+GF+ F R
Sbjct: 91 LWIGDLQYWMDENYINSCFAHTGEVTSVKVIRNKQTGQVEGYGFIEFGSHGTAERILQTY 150
Query: 80 -----ANKEMN-----------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK 116
N E N DF +F GDL DVTD +L TF YPS
Sbjct: 151 NGTPMPNGEQNFRLNWASFSGGDKRDDTPDFTIFVGDLAADVTDYILQDTFRVHYPSVKG 210
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T +TKG+GFV F D + +RA +MN
Sbjct: 211 AKVVIDRLTGRTKGYGFVRFGDESEQVRAMTDMN 244
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 70/165 (42%), Gaps = 50/165 (30%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D DF +F GDL DVTD +L TF YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 176 DDTPDFTIFVGDLAADVTDYILQDTFRVHYPSVKGAKVVIDRLTGRTKGYGFVRFGDESE 235
Query: 77 FIRANKEMNDDF-------------------------------------------RLFCG 93
+RA +MN F +F G
Sbjct: 236 QVRAMTDMNGAFCSTRPMRIGLATNKNAVTGQQYPKASYQNSQTQGENENDPNNTTIFVG 295
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+L ++VTD+ L F +Y L K+ KR GFV F D
Sbjct: 296 NLDSNVTDDNLRELFGRYGQLLHVKIPAGKRC------GFVQFAD 334
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 29/166 (17%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVS 70
+++ + N L+ G L VT+++L + F K++ DK ++KGF GFV
Sbjct: 59 VRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNF-QSKGFNYGFVE 117
Query: 71 FKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ DP Q IR N ++ ++ F +F GDL N+V DE+L
Sbjct: 118 YDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEVL 177
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
++ FS + + +A+V+ D +T +++G+GFV+F+D D +A M+
Sbjct: 178 LQAFSAFGTVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMD 223
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + + +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 159 NHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAFRDRADAEKA 218
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 219 LSSMDGEW 226
>gi|327299776|ref|XP_003234581.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
gi|326463475|gb|EGD88928.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
Length = 507
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P +++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 83 MSPTAAGGYVRRSAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSK 142
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GF+ + DP Q IR N ++ + F +F GDL
Sbjct: 143 GLNYGFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLS 202
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 203 NEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 255
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ F +F GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 192 SHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 251
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 252 LSSMDGEW 259
>gi|356562301|ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 401
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
++ GDL + + + L R F+ KV+R+K+T ++G+GFV F ++
Sbjct: 75 IWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 134
Query: 75 QDFIRANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ N E D +F GDL DVTD LL TF S YPS
Sbjct: 135 AGILMPNAEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVK 194
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A +MN
Sbjct: 195 AAKVVFDANTGRSKGYGFVRFGDDNERTQAMTQMN 229
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 46/176 (26%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD LL TF S YPS AKVV D T ++KG+GFV F D
Sbjct: 158 KGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGD 217
Query: 74 PQDFIRANKEMNDDF---------------------------------------RLFCGD 94
+ +A +MN + +F G
Sbjct: 218 DNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGLSNGTANQSEADSTNTTIFVGG 277
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L +V+DE L + FS+Y + K+ KG GFV F + + A +++N
Sbjct: 278 LDPNVSDEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLN 327
>gi|326480772|gb|EGE04782.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton equinum CBS 127.97]
Length = 507
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 27/173 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
+ P +++++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 83 MSPTAAGGYVRRSAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSK 142
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GF+ + DP Q IR N ++ + F +F GDL
Sbjct: 143 GLNYGFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLS 202
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 203 NEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 255
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ F +F GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 192 SHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKA 251
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 252 LSSMDGEW 259
>gi|195620484|gb|ACG32072.1| nucleic acid binding protein [Zea mays]
gi|195625400|gb|ACG34530.1| nucleic acid binding protein [Zea mays]
Length = 369
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P P SS +EN ++ GDL + + L F + KV+R+++T +++G
Sbjct: 32 PTPPSSGSGGNGCEENK-TIWVGDLQYWMDENYLHNCFGPSGEVVTIKVIRNRQTGQSEG 90
Query: 66 FGFVSF-------KDPQDFI---------------------RANKEMNDDFRLFCGDLGN 97
+GFV F K Q+F E+ D +F GDL
Sbjct: 91 YGFVEFFSHASAEKALQNFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDHSIFVGDLAA 150
Query: 98 DVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DVTDE+L+ FS KY S AKV+ D T +++G+GFV F D D A EMN
Sbjct: 151 DVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMSEMN 204
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +D +F GDL DVTDE+L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 132 EKRSEVASDHSIFVGDLAADVTDEMLLELFSSKYRSVKGAKVIIDANTGRSRGYGFVRFG 191
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D D A EMN ++C
Sbjct: 192 DDNDKSHAMSEMNG---VYC 208
>gi|224124344|ref|XP_002319308.1| predicted protein [Populus trichocarpa]
gi|222857684|gb|EEE95231.1| predicted protein [Populus trichocarpa]
Length = 344
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + ++ FS ++AKV+R+K+T +G+GF+ F
Sbjct: 69 LWIGDLQQWMDENYILSIFSTTGEVVQAKVIRNKQTGYPEGYGFIEFVSHAAAERILQTY 128
Query: 72 ------KDPQDF------IRANKEMND---DFRLFCGDLGNDVTDELLIRTFSK-YPSFL 115
Q F + A + D D+ +F GDL DV D LL TF Y S
Sbjct: 129 NGTPMPNSEQTFRLNWATLGAGERRQDDGPDYTVFIGDLAADVNDYLLQETFRNVYSSVK 188
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 189 GAKVVTDRVTGRSKGYGFVRFADENEQMRAMVEMN 223
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 66/163 (40%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DV D LL TF Y S AKVV D+ T ++KG+GFV F D +
Sbjct: 155 DDGPDYTVFIGDLAADVNDYLLQETFRNVYSSVKGAKVVTDRVTGRSKGYGFVRFADENE 214
Query: 77 FIRANKEMNDDF-----------------------------------------RLFCGDL 95
+RA EMN + +F G L
Sbjct: 215 QMRAMVEMNGQYCSTRPMRIGPAATKKPLTQQYQKAAYQSPQGNQGESDPNNTTIFVGAL 274
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
VTD+ L FSKY + K+ KR GFV F +
Sbjct: 275 DPSVTDDTLRAVFSKYGELVHVKIPAGKRC------GFVQFAN 311
>gi|255563907|ref|XP_002522953.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223537765|gb|EEF39383.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 404
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----- 79
L+ GDL + + L FS + AKV+R+K+T +G+GF+ F + R
Sbjct: 68 LWIGDLQQWMDEGYLFNIFSGTGEVVSAKVIRNKQTGMPEGYGFIEFINRAAAERILQTY 127
Query: 80 -----ANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N E N D+ +F GDL DV D +L TF + YPS
Sbjct: 128 NGTQMPNTEQNFRLNWATLAAGERRQDDGPDYTVFVGDLAPDVNDFILQETFRTVYPSVK 187
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T +TKG+GFV F D + RA EMN
Sbjct: 188 GAKVVTDRLTGRTKGYGFVRFGDENEQRRAMVEMN 222
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 67/163 (41%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DV D +L TF + YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 154 DDGPDYTVFVGDLAPDVNDFILQETFRTVYPSVKGAKVVTDRLTGRTKGYGFVRFGDENE 213
Query: 77 FIRANKEMNDDF-----------------------------------------RLFCGDL 95
RA EMN + +F G L
Sbjct: 214 QRRAMVEMNGQYCSTRAMRIGPAATKKPAVQQYQKAPYQSTQGTQGENDPNNTTIFVGAL 273
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
V+DE L + F KY + K+ KR GFV F +
Sbjct: 274 DPSVSDEHLRQVFGKYGELVHVKIPAGKRC------GFVQFAN 310
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+E+L + F K++ DK + +GFV + D
Sbjct: 73 RRAAPEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNA-RGYNYGFVEYDD 131
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V DE+L +
Sbjct: 132 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVNDEVLTQA 191
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 192 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 222
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 170 NHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKA 229
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 230 LSSMDGEW 237
>gi|15594035|emb|CAC69852.1| nucleic acid binding protein [Nicotiana tabacum]
Length = 456
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
++ GDL N + ++ L F+ KV+R+K+T ++G+GFV F
Sbjct: 119 IWVGDLLNWMDEDYLRNCFASTNEVASIKVIRNKQTGFSEGYGFVEFFTHAAAEKVLQTY 178
Query: 72 --------KDP-----QDFIRANKEMND--DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
P F +K N+ D +F GDL DVTD LL TF+ KYPS
Sbjct: 179 SCMTMPNVDQPFRLNWATFSMGDKRANNGSDLSIFVGDLAADVTDTLLHETFATKYPSVK 238
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 239 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMN 273
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K + +D +F GDL DVTD LL TF+ KYPS AKVV D T ++KG+GFV F D
Sbjct: 202 KRANNGSDLSIFVGDLAADVTDTLLHETFATKYPSVKAAKVVFDANTGRSKGYGFVRFGD 261
Query: 74 PQDFIRANKEMNDDFRLFC 92
+ +A EMN ++C
Sbjct: 262 DNERSQAMTEMNG---VYC 277
>gi|302904116|ref|XP_003049006.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729940|gb|EEU43293.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 474
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK + +GFV + D
Sbjct: 75 RRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-RGYNYGFVEYDD 133
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V DE+L++
Sbjct: 134 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQA 193
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 194 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 235
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 172 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 231
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 232 LSSMDGEW 239
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ + N L+ G L VT+++L + F K++ DK K +GFV +
Sbjct: 78 ARRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYD 136
Query: 73 DPQDFIRANKEMN--------------------------DDFRLFCGDLGNDVTDELLIR 106
DP RA + +N + F +F GDL N+V DE+L++
Sbjct: 137 DPGSAERAMQTLNGRRVHQAEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVNDEVLLQ 196
Query: 107 TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 197 AFSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 228
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 176 NHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKA 235
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 236 LSSMDGEW 243
>gi|30524689|emb|CAC85246.1| salt tolerance protein 6 [Beta vulgaris]
Length = 322
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 45/164 (27%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K ED +D+ +F GDL DVTD L TF +YPS AKVV D+ T+++KG+GFV F
Sbjct: 74 EKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLTSRSKGYGFVRFG 133
Query: 73 DPQDFIRANKEMN--------------------------------------DDFRLFCGD 94
D + RA EMN + +F G+
Sbjct: 134 DESEQARAMSEMNGMMCLGRAMRIGAAANKKSVGGTASYQNNQGTPNDSDPSNTTIFVGN 193
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
L ++VTDE L +TFS Y + K+ K+ GFV F +
Sbjct: 194 LDSNVTDEHLRQTFSPYGELVHVKIPAGKQC------GFVQFTN 231
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 30/145 (20%)
Query: 36 DELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDPQDFIRANKEM 84
DE IRT F++ + K++R+K+T +++ +GF+ F + + + N E
Sbjct: 2 DENYIRTCFAQSGELVNVKIIRNKQTMQSECYGFIEFSTHAAAERILQTYNNTLMPNVEQ 61
Query: 85 N------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRT 125
N D+ +F GDL DVTD L TF +YPS AKVV D+ T
Sbjct: 62 NYRLNWAFYGSGEKRGEDASDYTIFVGDLAPDVTDYTLQETFRVRYPSVKGAKVVIDRLT 121
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMN 150
+++KG+GFV F D + RA EMN
Sbjct: 122 SRSKGYGFVRFGDESEQARAMSEMN 146
>gi|356550321|ref|XP_003543536.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Glycine max]
Length = 419
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F + K++R+K T + +G+GFV F R +
Sbjct: 16 LWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQTY 75
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF + YPS
Sbjct: 76 NGTQMPATDQTFRLNWASFGIGERRPDAAPEHSIFVGDLAPDVTDYLLQETFRAHYPSVR 135
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 136 GAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMN 170
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD LL TF + YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 106 EHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRA 165
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 166 MTEMNG---VYC 174
>gi|224105517|ref|XP_002313840.1| predicted protein [Populus trichocarpa]
gi|222850248|gb|EEE87795.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 75/160 (46%), Gaps = 28/160 (17%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------- 71
+E ++ GDL + + + L FS K++R+K+T + +G+GFV F
Sbjct: 76 NEEAKTVWVGDLLHWMDETYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSHAAAE 135
Query: 72 KDPQDF-----------IRAN---------KEMNDDFRLFCGDLGNDVTDELLIRTFS-K 110
K Q + R N + D +F GDL DVTD +L TF+ K
Sbjct: 136 KVLQSYSGSMMPNTDQPFRLNWASFAGERRADAGSDLSIFVGDLAADVTDAMLQETFATK 195
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 196 YASVKGAKVVADSNTGRSKGYGFVRFGDENEKTRAITEMN 235
>gi|356550323|ref|XP_003543537.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 2 [Glycine max]
Length = 410
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 69/155 (44%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L F + K++R+K T + +G+GFV F R +
Sbjct: 16 LWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQTY 75
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD LL TF + YPS
Sbjct: 76 NGTQMPATDQTFRLNWASFGIGERRPDAAPEHSIFVGDLAPDVTDYLLQETFRAHYPSVR 135
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 136 GAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMN 170
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD LL TF + YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 106 EHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRA 165
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 166 MTEMNG---VYC 174
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
L P +++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 64 LSPTSAGGHVRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQNVKIIPDKNFQSK 123
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 124 GYNYGFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTNTKEDTSNHFHIFVGDLS 183
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
N+V DE+L++ FS + + +A+V+ D +T +++G+GFV+++D
Sbjct: 184 NEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYRD 225
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 16 TCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T ED N F +F GDL N+V DE+L++ FS + + +A+V+ D +T +++G+GFV+++D
Sbjct: 167 TKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYRDR 226
Query: 75 QDFIRANKEMNDDF 88
+ +A M+ ++
Sbjct: 227 GEAEKALSSMDGEW 240
>gi|443895172|dbj|GAC72518.1| RNA-binding proteins [Pseudozyma antarctica T-34]
Length = 286
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D RLF GDLG DV+DE+L F K+ SF +A+VVR K K+KG+GFV+F DP+DF+
Sbjct: 155 DPAHKRLFVGDLGGDVSDEMLAAAFDKWASFARARVVRAK-DGKSKGYGFVAFADPEDFL 213
Query: 79 RANKEMNDDF 88
+A K M+ +
Sbjct: 214 KAWKAMDGKY 223
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDLG DV+DE+L F K+ SF +A+VVR K K+KG+GFV+F DP+DF++A K
Sbjct: 160 RLFVGDLGGDVSDEMLAAAFDKWASFARARVVRAK-DGKSKGYGFVAFADPEDFLKAWKA 218
Query: 149 MN 150
M+
Sbjct: 219 MD 220
>gi|115453831|ref|NP_001050516.1| Os03g0569900 [Oryza sativa Japonica Group]
gi|113548987|dbj|BAF12430.1| Os03g0569900, partial [Oryza sativa Japonica Group]
Length = 446
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
L+ GDL + + L FS+ + AK++R+K+T + +G+GF+ F Q
Sbjct: 113 LWIGDLQFWMEENYLYNCFSQAGELISAKIIRNKQTGQPEGYGFIEFGSHAIAEQVLQGY 172
Query: 81 NKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N +M D+ +F GDL +DVTD +L TF + Y S
Sbjct: 173 NGQMMPNGNQVFKLNWATSGAGEKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVK 232
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + RA EMN
Sbjct: 233 GAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTEMN 267
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 49/168 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D +D+ +F GDL +DVTD +L TF + Y S AKVV D+ T ++KG+GFV F
Sbjct: 195 EKRGDDGSDYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFG 254
Query: 73 DPQDFIRANKEMNDDF------------------------------------------RL 90
D + RA EMN + +
Sbjct: 255 DLDEQTRAMTEMNGQYCSSRPMRIGPASNKKNIGGQQQPSATYQNTQGTDSDSDPNNTTV 314
Query: 91 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F G L VTDE+L + FS Y + K+ KR GFV + +
Sbjct: 315 FVGGLDPSVTDEVLKQAFSPYGELVYVKIPVGKRC------GFVQYSN 356
>gi|407037588|gb|EKE38710.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 175
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W+ ++ D NDFR+F G+LG +V D +L FSKYPS K KV+ + TNK+KG+GFV
Sbjct: 65 WVDESMADWPTNDFRMFIGNLGKEVDDTMLKIFFSKYPSVQKVKVIINPHTNKSKGYGFV 124
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF DP +++ A + +N +
Sbjct: 125 SFSDPNEYLLALRTLNGKY 143
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F G+LG +V D +L FSKYPS K KV+ + TNK+KG+GFVSF DP +++ A
Sbjct: 76 NDFRMFIGNLGKEVDDTMLKIFFSKYPSVQKVKVIINPHTNKSKGYGFVSFSDPNEYLLA 135
Query: 146 NKEMN 150
+ +N
Sbjct: 136 LRTLN 140
>gi|358383610|gb|EHK21274.1| hypothetical protein TRIVIDRAFT_116557, partial [Trichoderma virens
Gv29-8]
Length = 466
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK K +GFV + D
Sbjct: 68 RRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDD 126
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V D++L++
Sbjct: 127 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDDILLQA 186
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 187 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 228
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V D++L++ FS + S +A+V+ D +T +++G+GFV+F+D D +
Sbjct: 164 SNHFHIFVGDLSNEVNDDILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEK 223
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 224 ALSSMDGEW 232
>gi|340522219|gb|EGR52452.1| predicted protein [Trichoderma reesei QM6a]
Length = 477
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 27/163 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK K +GFV + D
Sbjct: 66 RRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDD 124
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V D++L++
Sbjct: 125 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDDILMQA 184
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS + S +A+V+ D +T +++G+GFV+F+D D +A M+
Sbjct: 185 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMD 227
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V D++L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 163 NHFHIFVGDLSNEVNDDILMQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKA 222
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 223 LSSMDGEW 230
>gi|453087889|gb|EMF15930.1| RRM_1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 486
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 27/162 (16%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNK 62
L P +++ + N L+ G L VT+++L + F K++ DK +K
Sbjct: 62 LSPTSAGGQVRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSK 121
Query: 63 TKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLG 96
+GFV + DP Q IR N ++ ++ F +F GDL
Sbjct: 122 GYNYGFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTSAKEDTSNHFHIFVGDLS 181
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
N+V DE+L++ FS + + +A+V+ D +T +++G+GF +F+D
Sbjct: 182 NEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFAAFRD 223
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + + +A+V+ D +T +++G+GF +F+D + +A
Sbjct: 171 NHFHIFVGDLSNEVNDEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFAAFRDRGEAEKA 230
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 231 LSSMDGEW 238
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 35/166 (21%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD------ 73
E++ ++ GDL + + L F++ + KV+R+K+T +++ +GF+ F
Sbjct: 76 EDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEK 135
Query: 74 -------------PQDF---------------IRANKEMNDDFRLFCGDLGNDVTDELLI 105
Q F + A D +F GDL +DVTD +L
Sbjct: 136 VLQSYNGTMMPNAEQPFRLNWSAFSSGEKRADVGAGAGSGSDLSIFVGDLASDVTDTMLR 195
Query: 106 RTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TFS +YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 196 DTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMN 241
>gi|307102655|gb|EFN50925.1| hypothetical protein CHLNCDRAFT_37645 [Chlorella variabilis]
Length = 179
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 4 LRPGPISSWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R W+ T + END+R+F G+LGN+V+D +L F ++P+F KAKVVR
Sbjct: 31 VRAAAGQRWVDTTLAEWPENDYRIFVGNLGNEVSDAVLTAAFQRFPTFQKAKVVRYAHNG 90
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D + + +EM +
Sbjct: 91 KSKGYGFVSFGDTIEGAKVLREMQGKY 117
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+F G+LGN+V+D +L F ++P+F KAKVVR K+KG+GFVSF D I
Sbjct: 50 NDYRIFVGNLGNEVSDAVLTAAFQRFPTFQKAKVVRYAHNGKSKGYGFVSFG---DTIEG 106
Query: 146 NKEMNEFPHLFVGD 159
K + E +VG+
Sbjct: 107 AKVLREMQGKYVGN 120
>gi|224078632|ref|XP_002305583.1| predicted protein [Populus trichocarpa]
gi|222848547|gb|EEE86094.1| predicted protein [Populus trichocarpa]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----- 79
L+ GDL + + + F+ K++R+K+T++ +G+GF+ R
Sbjct: 52 LWIGDLQYWMDENYIASCFAHTGEVASVKIIRNKQTSQIEGYGFIEMTSHGAAERILQTY 111
Query: 80 -----ANKEMN-----------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFLK 116
N E N DF +F GDL DVTD +L TF + +PS
Sbjct: 112 NGTPMPNGEQNFRLNWASFSGGDKRDDSPDFTIFVGDLAADVTDFMLQETFRAHFPSVKG 171
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T +TKG+GFV F D + +RA EMN
Sbjct: 172 AKVVIDRLTGRTKGYGFVRFGDESEQLRAMTEMN 205
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 74/175 (42%), Gaps = 48/175 (27%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D DF +F GDL DVTD +L TF + +PS AKVV D+ T +TKG+GFV F D +
Sbjct: 137 DDSPDFTIFVGDLAADVTDFMLQETFRAHFPSVKGAKVVIDRLTGRTKGYGFVRFGDESE 196
Query: 77 FIRANKEMNDDF-----------------------------------------RLFCGDL 95
+RA EMN F +F G+L
Sbjct: 197 QLRAMTEMNGAFCSTRPMRVGLASNKKAVVGQQYPKASYQNPQPQNDGDPNNTTIFVGNL 256
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
++V D+ L F +Y L K+ KR GFV F D A K +N
Sbjct: 257 DSNVMDDHLKELFGQYGQLLHVKIPAGKRC------GFVQFADRSSAEEALKMLN 305
>gi|357454295|ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
gi|355486476|gb|AES67679.1| RNA-binding protein [Medicago truncatula]
Length = 428
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L FS + K++R+K T + +G+GF+ F R +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N D +F GDL DVTD LL TF + Y S
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVR 136
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 137 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMN 171
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF + Y S AKVV D T ++KG+GFV F D + RA
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 167 MSEMNG---VYC 175
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 35/166 (21%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------K 72
E++ ++ GDL + + L F++ + KV+R+K+T +++ +GF+ F K
Sbjct: 76 EDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGFIEFNTHEAAEK 135
Query: 73 DPQDF---------------------------IRANKEMNDDFRLFCGDLGNDVTDELLI 105
Q + + A D +F GDL +DVTD +L
Sbjct: 136 VLQSYNGTMMPNAEQPFRLNWSAFSTGEKRADVGAAAGSGSDLSIFVGDLASDVTDTMLR 195
Query: 106 RTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TFS +YPS AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 196 DTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMN 241
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 73/174 (41%), Gaps = 54/174 (31%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+ +D +F GDL +DVTD +L TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 168 VGAAAGSGSDLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRF 227
Query: 72 KDPQDFIRANKEMNDDF------------------------------------------- 88
D + RA EMN +
Sbjct: 228 DDESERSRAMTEMNGIYCSSRAMRIGVATPKKPSAMQQYSSQGGHASNGAATQTSQTDSD 287
Query: 89 ----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L +DVTDE L ++FS++ + + K+ KG GFV F +
Sbjct: 288 LSNTTVFVGGLDSDVTDEELRQSFSQFGNVVSVKIP------AGKGCGFVQFSE 335
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 27/153 (17%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSF 71
+++ + N L+ G L VT+++L + F K++ DK +K +GFV +
Sbjct: 71 VRRAAPEPNKRALYVGGLDPRVTEDVLKQIFETTGHVQSVKIIPDKNFQSKGYNYGFVEY 130
Query: 72 KDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLI 105
DP Q IR N ++ ++ F +F GDL N+V DE+L+
Sbjct: 131 DDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTATKEDTSNHFHIFVGDLSNEVNDEVLL 190
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+ FS + + +A+V+ D +T +++G+GFV+F+D
Sbjct: 191 QAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRD 223
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 16 TCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T ED N F +F GDL N+V DE+L++ FS + + +A+V+ D +T +++G+GFV+F+D
Sbjct: 165 TKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRDR 224
Query: 75 QDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
+ +A M+ ++ LG+ + PSF + + + T +G
Sbjct: 225 GEAEKALSSMDGEW------LGSRAIRCNWANQKGQ-PSFSQQQAMAQMGMTPTTPYGHH 277
Query: 135 SF--KDPQDF 142
SF + PQ +
Sbjct: 278 SFPTQGPQSY 287
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK + +GFV + D
Sbjct: 81 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKNA-RGYNYGFVEYDD 139
Query: 74 P----------------QDFIR---------ANKE-MNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR ANKE ++ F +F GDL N+V DE+L++
Sbjct: 140 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLLQA 199
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 200 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 241
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 177 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEK 236
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 237 ALSSMDGEW 245
>gi|260943682|ref|XP_002616139.1| hypothetical protein CLUG_03380 [Clavispora lusitaniae ATCC 42720]
gi|238849788|gb|EEQ39252.1| hypothetical protein CLUG_03380 [Clavispora lusitaniae ATCC 42720]
Length = 134
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P W + FRLF G+LG + T+++L+ FSKY S KA V DK+T K KGF
Sbjct: 43 APAVKW------NPKHFRLFVGNLGPEATEDVLLAAFSKYSSLSKASVPLDKKTGKNKGF 96
Query: 67 GFVSFKDPQDFIRANKEMNDDF 88
GFVSF +D+++A KEMN +
Sbjct: 97 GFVSFATSEDYLKAFKEMNGKY 118
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+LG + T+++L+ FSKY S KA V DK+T K KGFGFVSF +D+++A
Sbjct: 52 HFRLFVGNLGPEATEDVLLAAFSKYSSLSKASVPLDKKTGKNKGFGFVSFATSEDYLKAF 111
Query: 147 KEMN 150
KEMN
Sbjct: 112 KEMN 115
>gi|164424152|ref|XP_962723.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
gi|157070397|gb|EAA33487.2| hypothetical protein NCU07874 [Neurospora crassa OR74A]
Length = 480
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK K +GFV + D
Sbjct: 82 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDK-NQKGYNYGFVEYDD 140
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ + F +F GDL N+V DE+L++
Sbjct: 141 PGAAERAMQTLNGRRVHQSEIRVNWAYQSNNQNKEDTSGHFHIFVGDLSNEVNDEVLLQA 200
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 201 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 242
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 181 FHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 240
Query: 83 EMNDDF 88
M+ ++
Sbjct: 241 SMDGEW 246
>gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
gi|297331134|gb|EFH61553.1| RNA-binding protein 47B [Arabidopsis lyrata subsp. lyrata]
Length = 435
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF--KDPQDFIRANK 82
L+ GDL + + + L FS KV+R+K T++++G+GF+ F + + + N
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFIEFLSRAAAEEVLQNY 169
Query: 83 ---------------------------EMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSF 114
E D +F GDL DVTD LL TF +YPS
Sbjct: 170 SGSLMPNSDQPFRINWASFSTGEKRAVENGPDLSIFVGDLSPDVTDALLHETFFDRYPSV 229
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TF +YPS AKVV D T ++KG+GFV F
Sbjct: 193 KRAVENGPDLSIFVGDLSPDVTDALLHETFFDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 253 DENERSRALTEMNGAY 268
>gi|297791731|ref|XP_002863750.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
gi|297309585|gb|EFH40009.1| hypothetical protein ARALYDRAFT_331131 [Arabidopsis lyrata subsp.
lyrata]
Length = 400
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ GDL + + + L +FS KV+R+K T T+G+GFV F + +E+
Sbjct: 93 IWVGDLLHWMDENYLNSSFSSAGEISSVKVIRNKHTGLTEGYGFVEFVSHDVAEKVLQEL 152
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL +VTD +L + FS KYPS
Sbjct: 153 NGEAMLNAEQPFRLNWASFSTGEKRLENGPDLSIFVGDLAPEVTDTMLEQIFSEKYPSVK 212
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 213 NAKVVIDGNTGRSKGYGFVRFGDDSERSKAMLEMN 247
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 28/157 (17%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E+ D +F GDL +VTD +L + FS KYPS AKVV D T ++KG+GFV F
Sbjct: 175 EKRLENGPDLSIFVGDLAPEVTDTMLEQIFSEKYPSVKNAKVVIDGNTGRSKGYGFVRFG 234
Query: 73 DPQDFIRANKEMNDDFRLFCG-------------------DLGNDVTDELLIRTFSKYPS 113
D + +A EMN CG L + VTD+ L + F+ Y
Sbjct: 235 DDSERSKAMLEMNG--VKCCGRAMRIGPATPRKPSGYHQQGLDSSVTDDDLRQPFAGYGE 292
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K+ KG GF+ F + ++ A +++N
Sbjct: 293 IVSVKIPVG------KGCGFIQFVNRENAEEALEKLN 323
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 79 RANKEMN----DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
R NK N ++ ++ GDL + + + L +FS KV+R+K T T+G+GFV
Sbjct: 78 RGNKYQNASNTENKTIWVGDLLHWMDENYLNSSFSSAGEISSVKVIRNKHTGLTEGYGFV 137
Query: 135 SF 136
F
Sbjct: 138 EF 139
>gi|345571041|gb|EGX53856.1| hypothetical protein AOL_s00004g515 [Arthrobotrys oligospora ATCC
24927]
Length = 496
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 31/165 (18%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVS 70
+++ + N L+ G L VTD++L + F + K++ DK KGF GFV
Sbjct: 68 VRRAAPEPNKRALYVGGLDPRVTDDILRQIFETTGHVVSVKIIPDK---NAKGFNYGFVE 124
Query: 71 FKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ DP Q IR N ++ + F +F GDL N+V DELL
Sbjct: 125 YDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSSQAAKEDTSHHFHIFVGDLSNEVNDELL 184
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+ F+ + + +A+V+ D +T +++G+GFV++++ D +A M
Sbjct: 185 QQAFTTFGTISEARVMWDMKTGRSRGYGFVAYRERSDAEKALSAM 229
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ F +F GDL N+V DELL + F+ + + +A+V+ D +T +++G+GFV++++ D +A
Sbjct: 166 HHFHIFVGDLSNEVNDELLQQAFTTFGTISEARVMWDMKTGRSRGYGFVAYRERSDAEKA 225
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 226 LSAMDGEW 233
>gi|322709421|gb|EFZ00997.1| oligouridylate binding protein ,putative [Metarhizium anisopliae
ARSEF 23]
Length = 472
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 27/160 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVSF 71
++ + N L+ G L VT+++L + F K++ DK KGF GFV +
Sbjct: 75 RRAAPEPNKRALYVGGLEQRVTEDVLRQIFETTGHVQNVKIIPDK---NAKGFNYGFVEY 131
Query: 72 KDPQDFIRA---------------------NKE-MNDDFRLFCGDLGNDVTDELLIRTFS 109
DP RA NKE + F +F GDL N+V D++L++ FS
Sbjct: 132 DDPGAAERAMSTLNGRREIRVNWAYQSNTSNKEDTSSHFHIFVGDLSNEVNDDILLQAFS 191
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+ + +A+V+ D +T +T+G+GFV+F+D D +A M
Sbjct: 192 AFGTVSEARVMWDMKTGRTRGYGFVAFRDRSDAEKALSSM 231
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V D++L++ FS + + +A+V+ D +T +T+G+GFV+F+D D +A
Sbjct: 170 FHIFVGDLSNEVNDDILLQAFSAFGTVSEARVMWDMKTGRTRGYGFVAFRDRSDAEKALS 229
Query: 83 EMNDDF 88
M+ ++
Sbjct: 230 SMDGEW 235
>gi|356552180|ref|XP_003544447.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 425
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
++ GDL + + + L R F+ KV+R+K+T ++G+GFV F ++
Sbjct: 99 IWIGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 158
Query: 75 QDFIRANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ N E D +F GDL DVTD LL TF S YPS
Sbjct: 159 AGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVK 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D +A +MN
Sbjct: 219 AAKVVFDANTGRSKGYGFVRFGDDNQRTQAMTQMN 253
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 74/176 (42%), Gaps = 46/176 (26%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD LL TF S YPS AKVV D T ++KG+GFV F D
Sbjct: 182 KGSDNVPDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGD 241
Query: 74 PQDFIRANKEMNDDF---------------------------------------RLFCGD 94
+A +MN + +F G
Sbjct: 242 DNQRTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTANQSEADSTNTTIFVGG 301
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L +V+DE L + FS+Y + K+ KG GFV F + + A +++N
Sbjct: 302 LDPNVSDEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLN 351
>gi|297737424|emb|CBI26625.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 29/144 (20%)
Query: 36 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR----------ANKEMN 85
+ L FS+ + KV+R+K+T + +G+GF+ R N E N
Sbjct: 3 ENYLWGCFSQTGEVVSVKVIRNKQTGQCEGYGFIELATRAAAERILQTYNGTLMPNSEQN 62
Query: 86 ------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTN 126
D+ +F GDL +DVTD +L TF YPS AKVV D+ T
Sbjct: 63 FRLNWATLGAGERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTG 122
Query: 127 KTKGFGFVSFKDPQDFIRANKEMN 150
++KG+GFV F D + +RA EMN
Sbjct: 123 RSKGYGFVRFGDEGEQLRAMNEMN 146
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D D+ +F GDL +DVTD +L TF YPS AKVV D+ T ++KG+GFV F
Sbjct: 74 ERRADDTPDYTIFVGDLASDVTDYVLQETFRGHYPSVKGAKVVTDRTTGRSKGYGFVRFG 133
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D + +RA EMN +FC
Sbjct: 134 DEGEQLRAMNEMNG---MFC 150
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK ++ +GFV + D
Sbjct: 84 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDK-NHRGYNYGFVEYDD 142
Query: 74 P----------------QDFIR---------ANKE-MNDDFRLFCGDLGNDVTDELLIRT 107
P Q+ IR ANKE ++ F +F GDL N+V DE+L +
Sbjct: 143 PGAAERAMQTLNGRRVHQNEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVNDEVLWQA 202
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
FS + S +A+V+ D +T +++G+GFV+F++ D +A M
Sbjct: 203 FSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKALSSM 244
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F++ D +A
Sbjct: 181 NHFHIFVGDLSNEVNDEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFRERADAEKA 240
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 241 LSSMDGEW 248
>gi|302784144|ref|XP_002973844.1| hypothetical protein SELMODRAFT_100454 [Selaginella moellendorffii]
gi|302803590|ref|XP_002983548.1| hypothetical protein SELMODRAFT_118305 [Selaginella moellendorffii]
gi|300148791|gb|EFJ15449.1| hypothetical protein SELMODRAFT_118305 [Selaginella moellendorffii]
gi|300158176|gb|EFJ24799.1| hypothetical protein SELMODRAFT_100454 [Selaginella moellendorffii]
Length = 350
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L F+ AKV+R+K+T ++G+GFV F + + +
Sbjct: 23 LWVGDLQYWMDEGYLYSCFAHTSEVQVAKVIRNKQTGYSEGYGFVEFTNHSTAEKVLQSF 82
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
N DF +F GDL DVTD +L TF S+Y S
Sbjct: 83 NGTQMPSTDIAFRLNWACFGIGERRPDQGPDFSIFVGDLAPDVTDYMLQETFQSRYSSVK 142
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D T ++KG+GFV F D + +RA EM
Sbjct: 143 GAKVVMDTTTARSKGYGFVRFGDEAEKMRAMTEM 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
DF +F GDL DVTD +L TF S+Y S AKVV D T ++KG+GFV F D + +RA
Sbjct: 113 DFSIFVGDLAPDVTDYMLQETFQSRYSSVKGAKVVMDTTTARSKGYGFVRFGDEAEKMRA 172
Query: 81 NKEM 84
EM
Sbjct: 173 MTEM 176
>gi|183231851|ref|XP_654695.2| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|169802306|gb|EAL49307.2| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449708297|gb|EMD47782.1| RRM -containing protein, putative [Entamoeba histolytica KU27]
Length = 175
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W+ ++ D NDFR+F G+LG +V D +L FSKYPS K KV+ + TNK+KG+GFV
Sbjct: 65 WVDESMADWPTNDFRMFVGNLGKEVDDTMLKIFFSKYPSVQKVKVIINPYTNKSKGYGFV 124
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF DP +++ A + +N +
Sbjct: 125 SFSDPNEYLLALRTLNGKY 143
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F G+LG +V D +L FSKYPS K KV+ + TNK+KG+GFVSF DP +++ A
Sbjct: 76 NDFRMFVGNLGKEVDDTMLKIFFSKYPSVQKVKVIINPYTNKSKGYGFVSFSDPNEYLLA 135
Query: 146 NKEMN 150
+ +N
Sbjct: 136 LRTLN 140
>gi|320585953|gb|EFW98632.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Grosmannia clavigera kw1407]
Length = 488
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+++ + N L+ G L VT+++L + F K++ DK K +GFV + D
Sbjct: 78 RRSAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDD 136
Query: 74 PQDFIRANKEMND--------------------------DFRLFCGDLGNDVTDELLIRT 107
P RA + +N F +F GDL N+V DE+L +
Sbjct: 137 PGAAERAMQNLNGRRVHQSEIRVNWAYQSNTTSKEDTSGHFHIFVGDLSNEVNDEVLTQA 196
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
F+ + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 197 FTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 238
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L + F+ + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 177 FHIFVGDLSNEVNDEVLTQAFTSFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 236
Query: 83 EMNDDF 88
M+ ++
Sbjct: 237 SMDGEW 242
>gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidopsis thaliana]
gi|75337808|sp|Q9SX80.1|R47CP_ARATH RecName: Full=Polyadenylate-binding protein RBP47C';
Short=Poly(A)-binding protein RBP47C'; AltName:
Full=RNA-binding protein 47C'; Short=AtRBP47C prime;
Short=AtRBP47C'
gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424
comes from this gene [Arabidopsis thaliana]
gi|110743035|dbj|BAE99410.1| hypothetical protein [Arabidopsis thaliana]
gi|124301030|gb|ABN04767.1| At1g47500 [Arabidopsis thaliana]
gi|332194057|gb|AEE32178.1| RNA-binding protein 47C' [Arabidopsis thaliana]
Length = 434
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDP-------Q 75
++ GDL N + + L F+ + KV+R+K ++G+GFV F+ Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 76 DFIRANKEMND----------------------DFRLFCGDLGNDVTDELLIRTFS-KYP 112
+F A D D +F GDL DV+D LL TFS KYP
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 48/157 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 81 NKEMND-----------------------------------------DFRLFCGDLGNDV 99
EMN + +F G L + V
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
TDE L + FS++ + K+ KG GFV F
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQF 348
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +D L+ G+L +T+++L + F + KV+ DK++N + FV + D
Sbjct: 75 ETSDRVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVN-YAFVEYAKAHDAS 133
Query: 79 RANKEMN----------------------DD--FRLFCGDLGNDVTDELLIRTFSKYPSF 114
A + +N DD F LF GDL D+ D+ L R+F +PS+
Sbjct: 134 VALQTLNGIQIENNKVKINRAFQSQQSTTDDSTFNLFVGDLNIDIDDDTLSRSFKDFPSY 193
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++A V+ D +T +++G+GFVSF D + +A +EM
Sbjct: 194 IQAHVMWDMQTGRSRGYGFVSFADQEQAQKAMEEM 228
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 49/71 (69%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+++ D++ F LF GDL D+ D+ L R+F +PS+++A V+ D +T +++G+GFVSF D
Sbjct: 158 QQSTTDDSTFNLFVGDLNIDIDDDTLSRSFKDFPSYIQAHVMWDMQTGRSRGYGFVSFAD 217
Query: 74 PQDFIRANKEM 84
+ +A +EM
Sbjct: 218 QEQAQKAMEEM 228
>gi|4455223|emb|CAB36546.1| putative DNA binding protein [Arabidopsis thaliana]
gi|7269553|emb|CAB79555.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 427
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L+ F AKV+R+K+ ++G+GF+ F + R +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD +L TF + Y S
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + IRA EMN
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMN 236
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF + Y S AKVV D+ T ++KG+GFV F D + IRA
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 232 MTEMNGQY 239
>gi|18416906|ref|NP_567764.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331668|sp|Q93W34.1|RP45C_ARATH RecName: Full=Polyadenylate-binding protein RBP45C;
Short=Poly(A)-binding protein RBP45C; AltName:
Full=RNA-binding protein 45C; Short=AtRBP45C
gi|13878153|gb|AAK44154.1|AF370339_1 putative DNA binding protein [Arabidopsis thaliana]
gi|15450814|gb|AAK96678.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17104569|gb|AAL34173.1| putative DNA binding protein [Arabidopsis thaliana]
gi|20259888|gb|AAM13291.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332659882|gb|AEE85282.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 415
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L+ F AKV+R+K+ ++G+GF+ F + R +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD +L TF + Y S
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + IRA EMN
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMN 236
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF + Y S AKVV D+ T ++KG+GFV F D + IRA
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 232 MTEMNGQY 239
>gi|145334517|ref|NP_001078604.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005307|gb|AED92690.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 421
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L FS+ + KV+R+K T + +G+GF+ F R +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 85 ND---------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLK 116
N D +F GDL DVTD LL TF Y S
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 81 NKEMNDDFRLFC 92
EMN L+C
Sbjct: 175 MAEMNG---LYC 183
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ PQ + + + L+ GDL V + L FS+ + KV+R+K T + +G+
Sbjct: 8 QPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGY 67
Query: 132 GFVSF 136
GF+ F
Sbjct: 68 GFIEF 72
>gi|15239715|ref|NP_197436.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75331115|sp|Q8VXZ9.1|R47BP_ARATH RecName: Full=Polyadenylate-binding protein RBP47B';
Short=Poly(A)-binding protein RBP47B'; AltName:
Full=RNA-binding protein 47B'; Short=AtRBP47B prime;
Short=AtRBP47B'
gi|18377731|gb|AAL67015.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|21281189|gb|AAM45052.1| putative DNA binding protein ACBF [Arabidopsis thaliana]
gi|332005306|gb|AED92689.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 425
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L FS+ + KV+R+K T + +G+GF+ F R +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 85 ND---------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLK 116
N D +F GDL DVTD LL TF Y S
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 81 NKEMNDDFRLFC 92
EMN L+C
Sbjct: 175 MAEMNG---LYC 183
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ PQ + + + L+ GDL V + L FS+ + KV+R+K T + +G+
Sbjct: 8 QPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGY 67
Query: 132 GFVSF 136
GF+ F
Sbjct: 68 GFIEF 72
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 30/155 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----------- 73
L+ GDL + + L F+ KV+R+K+T++++G+GF+ F
Sbjct: 69 LWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTY 128
Query: 74 --------PQDF----------IRANKEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSF 114
Q F R+ ++ + D+ +F GDL DVTD LL TF ++Y S
Sbjct: 129 NGAIMPNGGQSFRLNWATFSAGERSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSV 188
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F + + +RA EM
Sbjct: 189 KGAKVVIDRLTGRTKGYGFVRFSEESEQMRAMTEM 223
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 50/165 (30%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D+ +F GDL DVTD LL TF ++Y S AKVV D+ T +TKG+GFV F + +
Sbjct: 156 DDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSEESE 215
Query: 77 FIRANKEMN-------------------------------------------DDFRLFCG 93
+RA EM ++ +F G
Sbjct: 216 QMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPNNTTIFVG 275
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+L +VTD+ L + FS+Y + K+ KR GFV F D
Sbjct: 276 NLDPNVTDDHLRQVFSQYGELVHVKIPAGKRC------GFVQFAD 314
>gi|297807995|ref|XP_002871881.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
gi|297317718|gb|EFH48140.1| hypothetical protein ARALYDRAFT_488820 [Arabidopsis lyrata subsp.
lyrata]
Length = 426
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L FS+ + KV+R+K T + +G+GF+ F R +
Sbjct: 25 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 84
Query: 85 ND---------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLK 116
N D +F GDL DVTD LL TF Y S
Sbjct: 85 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 144
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 145 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 178
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 114 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 173
Query: 81 NKEMNDDFRLFC 92
EMN L+C
Sbjct: 174 MAEMNG---LYC 182
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
PQ + + + L+ GDL V + L FS+ + KV+R+K T + +G+G
Sbjct: 8 QPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYG 67
Query: 133 FVSF 136
F+ F
Sbjct: 68 FIEF 71
>gi|429859938|gb|ELA34694.1| rnp domain protein [Colletotrichum gloeosporioides Nara gc5]
Length = 312
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF +L +VTD+ L++ FS++ S K++V+RDKRT K+KG+GFVSF D DF
Sbjct: 163 DPSHLRLFV-NLAGEVTDDSLLKAFSRWKSVQKSRVIRDKRTAKSKGYGFVSFNDADDFF 221
Query: 79 RANKEMNDDF 88
+A KEMN +
Sbjct: 222 QAAKEMNGKY 231
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF +L +VTD+ L++ FS++ S K++V+RDKRT K+KG+GFVSF D DF +A K
Sbjct: 167 LRLFV-NLAGEVTDDSLLKAFSRWKSVQKSRVIRDKRTAKSKGYGFVSFNDADDFFQAAK 225
Query: 148 EMN 150
EMN
Sbjct: 226 EMN 228
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + + L R F+ KV+R+K + ++G+GF F ++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 75 QDFIRANKEMN------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ N + D +F GDL DVTD +L TF S YPS
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + +A +MN
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMN 253
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 46/176 (26%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD +L TFS YPS AKVV D T ++KG+GFV F D
Sbjct: 182 KGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGD 241
Query: 74 PQDFIRANKEMNDDF---------------------------------------RLFCGD 94
+ +A +MN + +F G
Sbjct: 242 ESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQTNGTSSQSEADSTNTTIFVGG 301
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L ++VTDE L +TFS+Y K+ KG GFV F + + A +++N
Sbjct: 302 LDSNVTDEDLKQTFSQYGEIASVKIPVG------KGCGFVQFANRNNAEEALQKLN 351
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 3 GLRPGPISSWIKKTCE-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
G +PG ++ E D + +F G L ++VTDE L +TFS+Y K+
Sbjct: 274 GHQPGGQTNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVG---- 329
Query: 62 KTKGFGFVSFKDPQDFIRANKEMN 85
KG GFV F + + A +++N
Sbjct: 330 --KGCGFVQFANRNNAEEALQKLN 351
>gi|346319566|gb|EGX89167.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cordyceps militaris CM01]
Length = 450
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVSF 71
+++ + N L+ G L VT+++L + F K++ DK KGF GFV +
Sbjct: 61 RRSAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK---NAKGFNYGFVEY 117
Query: 72 KDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLI 105
DP Q IR N ++ + F +F GDL N+V DE+L
Sbjct: 118 DDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTSGKEDTSGHFHIFVGDLSNEVNDEILT 177
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+ FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 178 QAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 210
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 160 FHIFVGDLSNEVNDEILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALS 219
Query: 83 EMNDDF 88
M+ ++
Sbjct: 220 SMDGEW 225
>gi|440301421|gb|ELP93807.1| rrm-containing protein, putative [Entamoeba invadens IP1]
Length = 142
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 12 WIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
W+ ++ E ND+R+F G+L +VT+E+L FS YPS K KV+++ T +TK +GFV
Sbjct: 24 WVDESLESWPANDYRMFVGNLSKEVTEEMLCSFFSAYPSVQKVKVIKNIHTGQTKEYGFV 83
Query: 70 SFKDPQDFIRANKEMNDDF 88
SF +P +F+ A +E+N +
Sbjct: 84 SFANPTEFLSALRELNGKY 102
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D+R+F G+L +VT+E+L FS YPS K KV+++ T +TK +GFVSF +P +F+ A
Sbjct: 35 NDYRMFVGNLSKEVTEEMLCSFFSAYPSVQKVKVIKNIHTGQTKEYGFVSFANPTEFLSA 94
Query: 146 NKEMN 150
+E+N
Sbjct: 95 LRELN 99
>gi|168064363|ref|XP_001784132.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664332|gb|EDQ51056.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 453
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L F K++R+K+T ++G+GFV F
Sbjct: 45 LWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHVAAEKILQAY 104
Query: 72 -----KDPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ + R N E + +F GDL DVTD +L TF ++YPS
Sbjct: 105 NGTQMPNTEQPFRLNWASFGIGERRPEAGPEHSIFVGDLAPDVTDYMLQETFRTRYPSVK 164
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 165 GAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMN 199
>gi|50550157|ref|XP_502551.1| YALI0D07876p [Yarrowia lipolytica]
gi|49648419|emb|CAG80739.1| YALI0D07876p [Yarrowia lipolytica CLIB122]
Length = 192
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+L +VT E + R F KY S KAKVV+DK + K G+GFVSF DP D+
Sbjct: 91 DPTHFRLFVGNLSGEVTTENVHRAFQKYKSLSKAKVVKDKISEKCAGYGFVSFSDPDDYF 150
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 151 KAFKEMDGKY 160
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VT E + R F KY S KAKVV+DK + K G+GFVSF DP D+ +A K
Sbjct: 95 FRLFVGNLSGEVTTENVHRAFQKYKSLSKAKVVKDKISEKCAGYGFVSFSDPDDYFKAFK 154
Query: 148 EMN 150
EM+
Sbjct: 155 EMD 157
>gi|405121946|gb|AFR96714.1| RNA recognition domain-containing protein (RRM)-containing protein
[Cryptococcus neoformans var. grubii H99]
Length = 249
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF GD+ NDV + L F+KYPS+ K KVVRD+ + K K + F++FKDP+DF+
Sbjct: 131 DPKWFRLFVGDVSNDVNERTLDEAFAKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFL 189
Query: 79 RANKEMNDDF 88
+A KEM+ +
Sbjct: 190 KAWKEMDGKY 199
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GD+ NDV + L F+KYPS+ K KVVRD+ + K K + F++FKDP+DF++A K
Sbjct: 135 FRLFVGDVSNDVNERTLDEAFAKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFLKAWK 193
Query: 148 EMNEFPHLFVGDLKTRSS 165
EM+ +VG+ R S
Sbjct: 194 EMD---GKYVGNRPIRLS 208
>gi|358397912|gb|EHK47280.1| hypothetical protein TRIATDRAFT_165657, partial [Trichoderma
atroviride IMI 206040]
Length = 465
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 27/163 (16%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK K +GFV + D
Sbjct: 67 RRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYGFVEYDD 125
Query: 74 P----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRT 107
P Q IR N ++ ++ F +F GDL N+V D++L +
Sbjct: 126 PGAADRAMATLNGRRVHQSEIRVNWAYQSNTTTKEDTSNHFHIFVGDLSNEVNDDILHQA 185
Query: 108 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS + S +A+V+ D +T +++G+GFV+F+D D +A M+
Sbjct: 186 FSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMD 228
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 16 TCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T ED N F +F GDL N+V D++L + FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 158 TKEDTSNHFHIFVGDLSNEVNDDILHQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDR 217
Query: 75 QDFIRANKEMNDDF 88
D +A M+ ++
Sbjct: 218 PDAEKALSSMDGEW 231
>gi|168049769|ref|XP_001777334.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061528|ref|XP_001782740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665773|gb|EDQ52446.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671310|gb|EDQ57864.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L F K++R+K+T ++G+GFV F
Sbjct: 10 LWVGDLQYWMDENYLHTAFVHTGEVQSVKIIRNKQTGYSEGYGFVEFVSHAAAEKILQAY 69
Query: 72 -----KDPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ + R N E + +F GDL DVTD +L TF ++YPS
Sbjct: 70 NGTQMPNTEQPFRLNWASFGIGERRPEAGPEHSIFVGDLAPDVTDYMLQETFRTRYPSVK 129
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 130 GAKVVTDANTGRSKGYGFVRFGDEMERNRAMSEMN 164
>gi|224104133|ref|XP_002313332.1| predicted protein [Populus trichocarpa]
gi|222849740|gb|EEE87287.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 68/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ + K++R+K T + +G+GFV F R +
Sbjct: 22 LWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQPEGYGFVEFVSHAAAERILQTY 81
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTFS-KYPSFL 115
N FRL F GDL DVTD LL TF YPS
Sbjct: 82 NGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRVHYPSVR 141
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 142 GAKVVTDPNTGRSKGYGFVKFADENERNRAMTEMN 176
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD LL TF YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 112 EHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRA 171
Query: 81 NKEMNDDFRLFC 92
EMN +FC
Sbjct: 172 MTEMNG---VFC 180
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L FS KV+R+K+TN+++G+GF+ F
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 72 -------------KDPQDFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ F K +D D+ +F GDL DV+D L F ++Y S
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVK 195
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 196 GAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEM 229
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 48/167 (28%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DV+D L F ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 158 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 217
Query: 73 DPQDFIRANKEMN-----------------------------------------DDFRLF 91
D + +RA EM ++ +F
Sbjct: 218 DESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIF 277
Query: 92 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
G+L +VTDE L + F++Y + K+ KR GFV F D
Sbjct: 278 VGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRC------GFVQFAD 318
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L FS KV+R+K+TN+++G+GF+ F
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 72 -------------KDPQDFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ F K +D D+ +F GDL DV+D L F ++Y S
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVK 195
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 196 GAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEM 229
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 48/167 (28%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DV+D L F ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 158 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 217
Query: 73 DPQDFIRANKEMN-----------------------------------------DDFRLF 91
D + +RA EM ++ +F
Sbjct: 218 DESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIF 277
Query: 92 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
G+L +VTDE L + F++Y + K+ KR GFV F D
Sbjct: 278 VGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRC------GFVQFAD 318
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+++ DE L FSKY + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ K++GFGFVSF+ +D +A EMN
Sbjct: 219 SIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEMN 252
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+++ DE L FSKY + + +V+ D+ K++GFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|224286528|gb|ACN40970.1| unknown [Picea sitchensis]
Length = 430
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
L+ GDL + + L FS + AK++R+K T +++G+GF+ F K Q +
Sbjct: 94 LWVGDLQFWMDEGYLHTCFSHTGELVSAKIIRNKYTGQSEGYGFMEFITRTAAEKIMQTY 153
Query: 78 ---IRANKE----MN--------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ N E MN DF +F GDL +DV+D +L TF S+Y S
Sbjct: 154 NGTLMPNTEQVFRMNWATFSMGERRLDGGPDFSIFVGDLDSDVSDLVLQETFQSRYSSVK 213
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 214 AAKVVMDANTGRSKGYGFVRFGEESERARAMTEMN 248
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
DF +F GDL +DV+D +L TF S+Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 184 DFSIFVGDLDSDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESERARA 243
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 244 MTEMNG---VYC 252
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ +E L F+KY + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAM 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D + K++GFGFVSF+ +D +A EMN
Sbjct: 219 SIRVMTDD-SGKSRGFGFVSFERHEDAQKAVDEMN 252
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ +E L F+KY + + +V+ D + K++GFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDD-SGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMLEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|58269410|ref|XP_571861.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114295|ref|XP_774395.1| hypothetical protein CNBG3760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257030|gb|EAL19748.1| hypothetical protein CNBG3760 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228097|gb|AAW44554.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 254
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF GD+ NDV + L F+KYPS+ K KVVRD+ + K K + F++FKDP+DF+
Sbjct: 131 DPKWFRLFVGDVSNDVNERTLDEAFAKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFL 189
Query: 79 RANKEMNDDFRL 90
+A KEM+ ++
Sbjct: 190 KAWKEMDGSTKI 201
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GD+ NDV + L F+KYPS+ K KVVRD+ + K K + F++FKDP+DF++A K
Sbjct: 135 FRLFVGDVSNDVNERTLDEAFAKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFLKAWK 193
Query: 148 EMN 150
EM+
Sbjct: 194 EMD 196
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+++ DE L FSKY + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDEMDDEKLRELFSKYGNAM 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ K++GFGFVSF+ +D +A EMN
Sbjct: 219 SIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEMN 252
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+++ DE L FSKY + + +V+ D+ K++GFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|357480265|ref|XP_003610418.1| RNA-binding protein [Medicago truncatula]
gi|355511473|gb|AES92615.1| RNA-binding protein [Medicago truncatula]
Length = 319
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L FS KV+R+K+TN+++G+GF+ F
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 72 -------------KDPQDFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ F K +D D+ +F GDL DV+D L F ++Y S
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVK 195
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T +TKG+GFV F D + +RA EM
Sbjct: 196 GAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEM 229
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DV+D L F ++Y S AKVV D+ T +TKG+GFV F
Sbjct: 158 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 217
Query: 73 DPQDFIRANKEM 84
D + +RA EM
Sbjct: 218 DESEQMRAMTEM 229
>gi|224284226|gb|ACN39849.1| unknown [Picea sitchensis]
Length = 429
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 78/155 (50%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
L+ GDL + + L FS + AK++R+K T +++G+GF+ F K Q +
Sbjct: 94 LWVGDLQFWMDEGYLHTCFSHTGELVSAKIIRNKYTGQSEGYGFMEFITRTAAEKIMQTY 153
Query: 78 ---IRANKE----MN--------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ N E MN DF +F GDL +DV+D +L TF S+Y S
Sbjct: 154 NGTLMPNTEQVFRMNWATFSMGERRLDGGPDFSIFVGDLDSDVSDLVLQETFQSRYSSVK 213
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 214 AAKVVMDANTGRSKGYGFVRFGEESERARAMTEMN 248
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
DF +F GDL +DV+D +L TF S+Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 184 DFSIFVGDLDSDVSDLVLQETFQSRYSSVKAAKVVMDANTGRSKGYGFVRFGEESERARA 243
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 244 MTEMNG---VYC 252
>gi|356547954|ref|XP_003542369.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 410
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VTD LL FS + K++R ++++ + F V+
Sbjct: 48 VYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRN 107
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD L FS YPS A+V+ D++
Sbjct: 108 IFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQK 167
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 168 TGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 63/185 (34%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 117 WAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGF 176
Query: 69 VSFKDPQDF----------------IRAN------------------------------- 81
VSF++ QD IR N
Sbjct: 177 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIVVELINGSSEEG 236
Query: 82 -KEMNDD--------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
+ NDD ++ G+L +VT L + F L A ++ D R + KGFG
Sbjct: 237 QETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LNAGIIEDVRVQRDKGFG 292
Query: 133 FVSFK 137
FV +
Sbjct: 293 FVRYS 297
>gi|255641747|gb|ACU21144.1| unknown [Glycine max]
Length = 397
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VTD LL FS + K++R ++++ + F V+
Sbjct: 48 VYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRN 107
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD L FS YPS A+V+ D++
Sbjct: 108 IFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQK 167
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 168 TGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 63/185 (34%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 117 WAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGF 176
Query: 69 VSFKDPQDF----------------IRAN------------------------------- 81
VSF++ QD IR N
Sbjct: 177 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIVVELINGSSEEG 236
Query: 82 -KEMNDD--------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
+ NDD ++ G+L +VT L + F L A ++ D R + KGFG
Sbjct: 237 QETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LNAGIIEDVRVQRDKGFG 292
Query: 133 FVSFK 137
FV +
Sbjct: 293 FVRYS 297
>gi|448090383|ref|XP_004197056.1| Piso0_004292 [Millerozyma farinosa CBS 7064]
gi|448094781|ref|XP_004198087.1| Piso0_004292 [Millerozyma farinosa CBS 7064]
gi|359378478|emb|CCE84737.1| Piso0_004292 [Millerozyma farinosa CBS 7064]
gi|359379509|emb|CCE83706.1| Piso0_004292 [Millerozyma farinosa CBS 7064]
Length = 175
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+LG D D LLI F KY S K KV DK++ K KG+GFV+F D++
Sbjct: 80 DPKHFRLFVGNLGTDANDALLISAFGKYESLSKVKVPIDKKSGKNKGYGFVAFSSSDDYL 139
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 140 RAFREMNGKY 149
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D D LLI F KY S K KV DK++ K KG+GFV+F D++RA +
Sbjct: 84 FRLFVGNLGTDANDALLISAFGKYESLSKVKVPIDKKSGKNKGYGFVAFSSSDDYLRAFR 143
Query: 148 EMN 150
EMN
Sbjct: 144 EMN 146
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA K+MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSR 176
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIKKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|356565743|ref|XP_003551097.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 411
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVS----- 70
++ G++ VTD LL FS + K++R ++++ + F V+
Sbjct: 48 VYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRN 107
Query: 71 -FKDP--QDFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F P ++ A+ + D F +F GDL +VTD L FS YPS A+V+ D++
Sbjct: 108 IFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQK 167
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 168 TGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 63/185 (34%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 117 WAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGF 176
Query: 69 VSFKDPQDF----------------IRAN------------------------------- 81
VSF++ QD IR N
Sbjct: 177 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQTSDSRSVVELTNGSSEDG 236
Query: 82 -KEMNDD--------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
+ NDD ++ G+L +VT L + F L A + D R + KGFG
Sbjct: 237 QETTNDDTPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LNAGTIEDVRVQRDKGFG 292
Query: 133 FVSFK 137
FV +
Sbjct: 293 FVRYS 297
>gi|451997861|gb|EMD90326.1| hypothetical protein COCHEDRAFT_1106708 [Cochliobolus
heterostrophus C5]
Length = 455
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK----TKGF--G 67
++ + N L+ G L VT+++L + F K++ DK + +KGF G
Sbjct: 43 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYG 102
Query: 68 FVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTD 101
FV + DP + IR N ++ ++ F +F GDL N+V D
Sbjct: 103 FVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHFHIFVGDLSNEVND 162
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA M
Sbjct: 163 EVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERALNSM 210
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D R
Sbjct: 146 SNHFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAER 205
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 206 ALNSMDGEW 214
>gi|356557398|ref|XP_003547003.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 404
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA 80
RL CG L V + L F+ + K++R++ T + +G+GFV F + ++
Sbjct: 6 RLGCG-LRTAVDEAYLSHCFAPAGEVVSIKIIRNELTGQPEGYGFVEFVSHATAERVLQT 64
Query: 81 NKEMNDDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFLKAKV 119
+ FRL F GDL D+TD LL F + YPS AKV
Sbjct: 65 YNATDQTFRLNWASFGIGERRPDAALEHSIFVGDLAPDITDYLLQEMFRAHYPSVRGAKV 124
Query: 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V D T ++KG+GFV F D + RA EMN
Sbjct: 125 VSDPNTGRSKGYGFVKFSDENERNRAMTEMN 155
>gi|50422139|ref|XP_459632.1| DEHA2E07392p [Debaryomyces hansenii CBS767]
gi|49655300|emb|CAG87862.1| DEHA2E07392p [Debaryomyces hansenii CBS767]
Length = 183
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF G+LG D TDELL F KY + K KV D +T K KG+GFV+F+ P D+ +A K
Sbjct: 86 FRLFVGNLGTDATDELLANAFGKYKTLSKVKVPMDNKTGKNKGYGFVAFESPDDYFQAFK 145
Query: 83 EMNDDF 88
+MN +
Sbjct: 146 DMNGKY 151
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D TDELL F KY + K KV D +T K KG+GFV+F+ P D+ +A K
Sbjct: 86 FRLFVGNLGTDATDELLANAFGKYKTLSKVKVPMDNKTGKNKGYGFVAFESPDDYFQAFK 145
Query: 148 EMN 150
+MN
Sbjct: 146 DMN 148
>gi|50548677|ref|XP_501808.1| YALI0C13860p [Yarrowia lipolytica]
gi|49647675|emb|CAG82118.1| YALI0C13860p [Yarrowia lipolytica CLIB122]
Length = 367
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 19/135 (14%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
+F G L + TDE L F+++ L+ V+RD + K++GFGF++F+DP+
Sbjct: 1 MFIGGLNWETTDESLTNYFAQFGEVLECTVMRDHFSGKSRGFGFLTFRDPKCVNAVMAKE 60
Query: 76 --------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
D RA +E + ++F G +G+DVT+E + F +Y + + A+++ DK +
Sbjct: 61 HYLDGKIIDPKRAIPREEQDKTSKIFVGGVGSDVTEEDYKQFFEQYGTVIDAQLMIDKDS 120
Query: 126 NKTKGFGFVSFKDPQ 140
+ +GFGFV+F Q
Sbjct: 121 GRPRGFGFVTFDSEQ 135
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
E + ++F G +G+DVT+E + F +Y + + A+++ DK + + +GFGFV+F Q
Sbjct: 78 EQDKTSKIFVGGVGSDVTEEDYKQFFEQYGTVIDAQLMIDKDSGRPRGFGFVTFDSEQ 135
>gi|451847206|gb|EMD60514.1| hypothetical protein COCSADRAFT_29739 [Cochliobolus sativus ND90Pr]
Length = 506
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK----TKGF--G 67
++ + N L+ G L VT+++L + F K++ DK + +KGF G
Sbjct: 75 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYG 134
Query: 68 FVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTD 101
FV + DP + IR N ++ ++ F +F GDL N+V D
Sbjct: 135 FVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHFHIFVGDLSNEVND 194
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA M
Sbjct: 195 EVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERALNSM 242
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA
Sbjct: 179 NHFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERA 238
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 239 LNSMDGEW 246
>gi|242062048|ref|XP_002452313.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
gi|241932144|gb|EES05289.1| hypothetical protein SORBIDRAFT_04g023540 [Sorghum bicolor]
Length = 435
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 78/160 (48%), Gaps = 29/160 (18%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------K 72
E++ ++ GDL + + L F + KV+R++ + ++G+GFV F K
Sbjct: 106 EDNRTIWVGDLQYWMDENYLHSCFGPSGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEK 165
Query: 73 DPQDFI--------RANK-------------EMNDDFRLFCGDLGNDVTDELLIRTFS-K 110
Q+F RA K E++ D +F GDL DVTDE+L+ FS K
Sbjct: 166 ALQNFSGHVMPNTDRAFKLNWASYSMGEKRTELSSDHSIFVGDLAVDVTDEMLLELFSNK 225
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKV+ D T +++G+GFV F D D A EMN
Sbjct: 226 YRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHAMTEMN 265
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 42/173 (24%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +D +F GDL DVTDE+L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 193 EKRTELSSDHSIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFG 252
Query: 73 DPQDFIRANKEMNDDF-----------------------------------RLFCGDLGN 97
D D A EMN + ++ G L
Sbjct: 253 DDNDKTHAMTEMNGVYCSTRPIRVGPATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDP 312
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+++ L + F+KY K+ K+ GFV F + D A + +N
Sbjct: 313 NVSEDELRKAFAKYGDLASVKIPFGKQC------GFVQFVNRADAEEALQGLN 359
>gi|169614620|ref|XP_001800726.1| hypothetical protein SNOG_10456 [Phaeosphaeria nodorum SN15]
gi|160702784|gb|EAT81850.2| hypothetical protein SNOG_10456 [Phaeosphaeria nodorum SN15]
Length = 506
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK----TKGF--G 67
++ + N L+ G L VT+++L + F K++ DK + +KGF G
Sbjct: 77 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTVSSPSVNSKGFNYG 136
Query: 68 FVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTD 101
FV + DP + IR N ++ ++ F +F GDL N+V D
Sbjct: 137 FVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHFHIFVGDLSNEVND 196
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA M
Sbjct: 197 EVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERALSSM 244
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA
Sbjct: 181 NHFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADAERA 240
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 241 LSSMDGEW 248
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RDK T ++ G+ +V+++ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D+ L FSKY + +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAM 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ K++GFGFVSF+ +D RA EMN
Sbjct: 219 SIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMN 252
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FSKY + + +V+ D+ K++GFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ D ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|300175779|emb|CBK21322.2| unnamed protein product [Blastocystis hominis]
Length = 320
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 26/154 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA---- 80
L+ GD+ + T++ L K++RD+ TN++ GFGF+ F +D I A
Sbjct: 5 LWIGDVQENWTEDYLCALMRNAKGLSSIKLMRDRTTNESLGFGFIDFATEEDAIHALNGY 64
Query: 81 ---------------------NKEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
N + D++ L+ GDL + VTD L F KY SF AK
Sbjct: 65 NGRPIPGTGYTFRLNFGGNSRNLNLGDNYCLYIGDLESSVTDTQLYTIFRDKYLSFCGAK 124
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
++R+ T+ +KG+GF+ F+ + A KEMN +
Sbjct: 125 IMRETGTSVSKGYGFIQFRARDEAETALKEMNGY 158
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+++ L+ GDL + VTD L F KY SF AK++R+ T+ +KG+GF+ F+ +
Sbjct: 91 DNYCLYIGDLESSVTDTQLYTIFRDKYLSFCGAKIMRETGTSVSKGYGFIQFRARDEAET 150
Query: 80 ANKEMN 85
A KEMN
Sbjct: 151 ALKEMN 156
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GD+ + T++ L K++RD+ TN++ GFGF+ F +D I A
Sbjct: 5 LWIGDVQENWTEDYLCALMRNAKGLSSIKLMRDRTTNESLGFGFIDFATEEDAIHALNGY 64
Query: 150 NEFP 153
N P
Sbjct: 65 NGRP 68
>gi|330933733|ref|XP_003304275.1| hypothetical protein PTT_16807 [Pyrenophora teres f. teres 0-1]
gi|311319203|gb|EFQ87630.1| hypothetical protein PTT_16807 [Pyrenophora teres f. teres 0-1]
Length = 485
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 32/168 (19%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK----TKGF--G 67
++ + N L+ G L VT+++L + F K++ DK + +KGF G
Sbjct: 74 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYG 133
Query: 68 FVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTD 101
FV + DP + IR N ++ ++ F +F GDL N+V D
Sbjct: 134 FVEYDDPGAAERGMATLNGRRIHNNEIRVNWAYQSNNTAKEDTSNHFHIFVGDLSNEVND 193
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E+L++ FS + +A+V+ D +T +++G+GFV+F+D D RA M
Sbjct: 194 EVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSSM 241
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + +A+V+ D +T +++G+GFV+F+D D R
Sbjct: 177 SNHFHIFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADR 236
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 237 ALSSMDGEW 245
>gi|350291093|gb|EGZ72307.1| hypothetical protein NEUTE2DRAFT_144798 [Neurospora tetrasperma
FGSC 2509]
Length = 490
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 35/171 (20%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT-------KGF 66
++ + N L+ G L VT+++L + F K++ DK K KG+
Sbjct: 82 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGKPGSEQPRQKGY 141
Query: 67 --GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGDLGND 98
GFV + DP Q IR N ++ + F +F GDL N+
Sbjct: 142 NYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNQNKEDTSGHFHIFVGDLSNE 201
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 202 VNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 191 FHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 250
Query: 83 EMNDDF 88
M+ ++
Sbjct: 251 SMDGEW 256
>gi|321261301|ref|XP_003195370.1| hypothetical protein CGB_G5330W [Cryptococcus gattii WM276]
gi|317461843|gb|ADV23583.1| Hypothetical protein CGB_G5330W [Cryptococcus gattii WM276]
Length = 254
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GD+ NDV ++ L F KYPS+ K KVVRD+ + K K + F++FKDP+DF++A K
Sbjct: 135 FRLFVGDVSNDVNEKTLDEAFGKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFLKAWK 193
Query: 148 EMNEFPHL--FVGDLKTRSS 165
EM+ ++ +VG+ R S
Sbjct: 194 EMDGSTNIGKYVGNRPIRLS 213
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF GD+ NDV ++ L F KYPS+ K KVVRD+ + K K + F++FKDP+DF+
Sbjct: 131 DPKWFRLFVGDVSNDVNEKTLDEAFGKYPSYCKCKVVRDRLSLKAK-YAFIAFKDPEDFL 189
Query: 79 RANKEMN 85
+A KEM+
Sbjct: 190 KAWKEMD 196
>gi|413922759|gb|AFW62691.1| hypothetical protein ZEAMMB73_026342 [Zea mays]
Length = 430
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 29/160 (18%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------K 72
E++ ++ GDL + + L F + KV+R++ + ++G+GF+ F K
Sbjct: 101 EDNRTIWVGDLQYWMDENYLHSCFGSSGEVVNIKVIRNRHSGVSEGYGFIEFYTHVSAEK 160
Query: 73 DPQDFI--------RANK-------------EMNDDFRLFCGDLGNDVTDELLIRTFS-K 110
Q+F RA K E++ D +F GDL DVTD +L+ FS K
Sbjct: 161 ALQNFSGHVMPNTDRAFKLNWASYSMGEKRSEISSDHSIFVGDLAVDVTDAMLLELFSNK 220
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKV+ D T +++G+GFV F D D I A EMN
Sbjct: 221 YRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKIHAMTEMN 260
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +D +F GDL DVTD +L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 188 EKRSEISSDHSIFVGDLAVDVTDAMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFG 247
Query: 73 DPQDFIRANKEMNDDFRLFC 92
D D I A EMN ++C
Sbjct: 248 DDNDKIHAMTEMNG---VYC 264
>gi|449523756|ref|XP_004168889.1| PREDICTED: polyadenylate-binding protein RBP47-like [Cucumis
sativus]
Length = 437
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 76/155 (49%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
L+ GDL + + L F+ KV+ +K+T +++G+GFV F K Q++
Sbjct: 102 LWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNY 161
Query: 78 ---IRANKEM-----------ND-------DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
I N E+ ND D +F GDL DVTD +L TF S+Y S
Sbjct: 162 NGTIMPNTELPFRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVK 221
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D + ++KG+GFV F D + RA EMN
Sbjct: 222 GAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMN 256
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 62/181 (34%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL DVTD +L TFS +Y S AKVV D + ++KG+GFV F D + R
Sbjct: 191 SDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTR 250
Query: 80 ANKEMN----------------------------------------------------DD 87
A EMN ++
Sbjct: 251 AMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDSESNN 310
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIR 144
+F G L +DV+DE L + FSK+ + K+ KG GFV F K+ +D I+
Sbjct: 311 TTIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIG------KGCGFVQFANRKNAEDAIQ 364
Query: 145 A 145
Sbjct: 365 G 365
>gi|241948881|ref|XP_002417163.1| RNA-binding protein, putative [Candida dubliniensis CD36]
gi|223640501|emb|CAX44755.1| RNA-binding protein, putative [Candida dubliniensis CD36]
Length = 145
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ FRLF G+LG D DELL F KYPS + V D++T K KGFGFV+F +D++
Sbjct: 52 NPKHFRLFVGNLGPDGNDELLKEAFQKYPSMSQVHVPIDRKTTKNKGFGFVAFGKSEDYL 111
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 112 RAFQEMNGKY 121
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+LG D DELL F KYPS + V D++T K KGFGFV+F +D++RA
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFQKYPSMSQVHVPIDRKTTKNKGFGFVAFGKSEDYLRAF 114
Query: 147 KEMN 150
+EMN
Sbjct: 115 QEMN 118
>gi|68480240|ref|XP_715929.1| potential RNA binding protein [Candida albicans SC5314]
gi|68480356|ref|XP_715879.1| potential RNA binding protein [Candida albicans SC5314]
gi|46437522|gb|EAK96867.1| potential RNA binding protein [Candida albicans SC5314]
gi|46437574|gb|EAK96918.1| potential RNA binding protein [Candida albicans SC5314]
gi|238879021|gb|EEQ42659.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 145
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
FRLF G+LG D DELL FSKYPS + V D++T+K KGFGFV+F +D++ A
Sbjct: 55 HFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAF 114
Query: 82 KEMNDDF 88
+EMN +
Sbjct: 115 QEMNGKY 121
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
+P + A FRLF G+LG D DELL FSKYPS + V D++T+K KGFG
Sbjct: 41 NPAKQVTAPNWNPKHFRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFG 100
Query: 133 FVSFKDPQDFIRANKEMN 150
FV+F +D++ A +EMN
Sbjct: 101 FVAFGKSEDYLHAFQEMN 118
>gi|357466551|ref|XP_003603560.1| RNA-binding protein [Medicago truncatula]
gi|355492608|gb|AES73811.1| RNA-binding protein [Medicago truncatula]
Length = 414
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F K++R ++++ +GFV + D
Sbjct: 36 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 91
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN D F +F GDL +VTD L FS Y + A+V+
Sbjct: 92 HGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVM 151
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF+D QD A +N+ ++G+ + R + KG
Sbjct: 152 WDHKTGRSKGYGFVSFRDHQD---AQSAINDMTGKWLGNRQIRCNWATKG 198
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL +VTD L FS Y + A+V+ D +T ++KG+GFVSF+D QD A
Sbjct: 119 FNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 178
Query: 83 EMNDDF 88
+M +
Sbjct: 179 DMTGKW 184
>gi|357466549|ref|XP_003603559.1| RNA-binding protein [Medicago truncatula]
gi|355492607|gb|AES73810.1| RNA-binding protein [Medicago truncatula]
Length = 440
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F K++R ++++ +GFV + D
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN D F +F GDL +VTD L FS Y + A+V+
Sbjct: 118 HGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVM 177
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF+D QD A +N+ ++G+ + R + KG
Sbjct: 178 WDHKTGRSKGYGFVSFRDHQD---AQSAINDMTGKWLGNRQIRCNWATKG 224
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL +VTD L FS Y + A+V+ D +T ++KG+GFVSF+D QD A
Sbjct: 145 FNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIN 204
Query: 83 EMNDDF 88
+M +
Sbjct: 205 DMTGKW 210
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D + K+KGFGFVSF+ +D RA EMN
Sbjct: 219 SIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F KY L +V+ D + K+KGFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|224115710|ref|XP_002332123.1| predicted protein [Populus trichocarpa]
gi|222874943|gb|EEF12074.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 31/171 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
R++ G++ +VTD+LL F+ K++R +++ +GFV + D
Sbjct: 46 RVYVGNIHVNVTDKLLAEVFATAGPLAGCKLIRKDKSS----YGFVDYHDQSSAALAIMT 101
Query: 76 -------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 119
++ N + D F +F GDL +V D L FS +PS A+V
Sbjct: 102 LHGRQLYGQALKVNWAYGNSQREDTSGHFHVFVGDLSPEVIDANLFACFSVFPSCSNARV 161
Query: 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
+ D +T ++KG+GFVSF++ Q+ A +N+ ++G+ + R + KG
Sbjct: 162 MWDHKTGRSKGYGFVSFRNQQE---AQSAINDLTGKWLGNRQIRCNWATKG 209
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 60/185 (32%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF---- 77
F +F GDL +V D L FS +PS A+V+ D +T ++KG+GFVSF++ Q+
Sbjct: 129 HFHVFVGDLSPEVIDANLFACFSVFPSCSNARVMWDHKTGRSKGYGFVSFRNQQEAQSAI 188
Query: 78 ------------IRAN-----KEMNDDFR------------------------------- 89
IR N E N+D +
Sbjct: 189 NDLTGKWLGNRQIRCNWATKGVESNEDKQNSDNQNAVVLTNGSSEGGQESTNEEAPENNP 248
Query: 90 ----LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ G+L ++VT L R F L A V+ D R + KGFGFV + ++ A
Sbjct: 249 AYTTVYVGNLSHEVTQAELHRHFHA----LGAGVIEDVRVQRDKGFGFVRYNTHEEAASA 304
Query: 146 NKEMN 150
+ N
Sbjct: 305 IQTGN 309
>gi|82400162|gb|ABB72820.1| oligouridylate binding protein-like protein [Solanum tuberosum]
Length = 417
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F G++ VT+ LL FS K++R ++++ +GF+ + D + A +
Sbjct: 56 VFVGNIHPQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIVSL 111
Query: 85 N------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD +L FS YP A+V+
Sbjct: 112 NGRHLFGQPIKVNWAFASGQREDTSSHFNIFVGDLSPEVTDAMLFACFSVYPGCSDARVM 171
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 172 WDQKTGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 218
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 60/172 (34%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF--- 77
+ F +F GDL +VTD +L FS YP A+V+ D++T +++GFGFVSF++ QD
Sbjct: 137 SHFNIFVGDLSPEVTDAMLFACFSVYPGCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 196
Query: 78 -------------IRAN-----KEMNDDFR------------------------------ 89
IR N NDD +
Sbjct: 197 INDLTGKWLGSRQIRCNWATKGANSNDDKQSSDAKSVVELTNGSSEDGKEAANSDAPENN 256
Query: 90 -----LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
++ G++ +VT L R F L A V+ + R + KGFGFV +
Sbjct: 257 PQYTTVYVGNIAPEVTQLDLHRYFHA----LGAGVIEEIRIQRDKGFGFVRY 304
>gi|297850132|ref|XP_002892947.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
gi|297338789|gb|EFH69206.1| hypothetical protein ARALYDRAFT_889143 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VT+ LL F+ K++R ++++ ++ G +S
Sbjct: 56 VYVGNIHIQVTEPLLQEVFASTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD +L FS YPS A+V+ D++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFNCFSVYPSCSDARVMWDQK 175
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A ++E ++G + R + KG
Sbjct: 176 TGRSRGFGFVSFRNQQD---AQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E + F +F GDL +VTD +L FS YPS A+V+ D++T +++GFGF
Sbjct: 125 WAYASGQREDTSSHFNIFVGDLSPEVTDAMLFNCFSVYPSCSDARVMWDQKTGRSRGFGF 184
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ QD A E+ +
Sbjct: 185 VSFRNQQDAQTAIDEITGKW 204
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SIRVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L +V+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|224067280|ref|XP_002302445.1| predicted protein [Populus trichocarpa]
gi|222844171|gb|EEE81718.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 22 DFRLFC-GDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF--------- 71
D + C GDL + + + L F+ KV+R K+T ++G+GFV F
Sbjct: 94 DNKTICIGDLHHWMDENYLHTCFASTGEIASIKVIRSKQTGLSEGYGFVEFFTHATAEKV 153
Query: 72 -KDPQDFIRANKEM------------------NDDFRLFCGDLGNDVTDELLIRTF-SKY 111
++ + N E D +F GDL DVTD LL TF SKY
Sbjct: 154 LQNYGGILMPNTEQPFRLNWATFSTGDKRSDNTPDLSIFVGDLAADVTDSLLQETFASKY 213
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 214 QSVKSAKVVFDANTGRSKGYGFVRFGDDTERTQAMTEMN 252
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 51/181 (28%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD LL TF SKY S AKVV D T ++KG+GFV F D
Sbjct: 181 KRSDNTPDLSIFVGDLAADVTDSLLQETFASKYQSVKSAKVVFDANTGRSKGYGFVRFGD 240
Query: 74 PQDFIRANKEMNDDF--------------------------------------------R 89
+ +A EMN +
Sbjct: 241 DTERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQGGYGSNGASSQGFQSDGDSSNAT 300
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G L +VTDE L + FS+Y + K+ +KG GFV F + + A +++
Sbjct: 301 IFVGGLDPNVTDEDLKQPFSQYGEIVSVKIP------VSKGCGFVQFANRNNAEEALQKL 354
Query: 150 N 150
N
Sbjct: 355 N 355
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
gi|75334165|sp|Q9FPJ8.1|RB45A_ARATH RecName: Full=Polyadenylate-binding protein RBP45A;
Short=Poly(A)-binding protein RBP45A; AltName:
Full=RNA-binding protein 45A; Short=AtRBP45A
gi|11762114|gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana]
gi|119360145|gb|ABL66801.1| At5g54900 [Arabidopsis thaliana]
gi|332009171|gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + ++ F++ AKV+R+K T +++G+GF+ F R +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 85 ND-----------------------------DFRLFCGDLGNDVTDELLIRTFSK-YPSF 114
N D +F GDL +VTD +L TF Y S
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMN 217
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 47/158 (29%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 81 NKEMNDDF----------------------------------------RLFCGDLGNDVT 100
EMN + +F G L +VT
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
D+ L F ++ L K+ KR GFV + +
Sbjct: 273 DDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 304
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I + E D L+ G+L + V D+LL F + V RDK T +G+GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 73 DPQDF----------------IRANKEMND--DF----RLFCGDLGNDVTDELLIRTFSK 110
+ D +R NK D +F +F G+L DV ++ + TFS
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSA 138
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ + + AK++RD T ++GFGFVSF
Sbjct: 139 FGNIISAKIMRDPETGLSRGFGFVSF 164
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ K+ +D +F +F G+L DV ++ + TFS + + + AK++RD T ++GFGF
Sbjct: 102 LNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGF 161
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + A MN F
Sbjct: 162 VSFDTFEASDAALAAMNGQF 181
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 40/86 (46%)
Query: 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
G G SF I E N D L+ G+L + V D+LL F + V RDK
Sbjct: 6 GGGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKL 65
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMN 150
T +G+GFV F++ D A K MN
Sbjct: 66 TGNHQGYGFVEFRNEVDADYALKLMN 91
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I + E D L+ G+L + V D+LL F + V RDK T +G+GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 73 DPQDF----------------IRANKEMND--DF----RLFCGDLGNDVTDELLIRTFSK 110
+ D +R NK D +F +F G+L DV ++ + TFS
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSA 138
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ + + AK++RD T ++GFGFVSF
Sbjct: 139 FGNIISAKIMRDPETGLSRGFGFVSF 164
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ K+ +D +F +F G+L DV ++ + TFS + + + AK++RD T ++GFGF
Sbjct: 102 LNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGF 161
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + A MN F
Sbjct: 162 VSFDTFEASDAALAAMNGQF 181
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 40/86 (46%)
Query: 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
G G SF I E N D L+ G+L + V D+LL F + V RDK
Sbjct: 6 GGGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKL 65
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMN 150
T +G+GFV F++ D A K MN
Sbjct: 66 TGNHQGYGFVEFRNEVDADYALKLMN 91
>gi|336469273|gb|EGO57435.1| hypothetical protein NEUTE1DRAFT_129383 [Neurospora tetrasperma
FGSC 2508]
Length = 494
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 39/175 (22%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV-------------RDKRT 60
++ + N L+ G L VT+++L + F K++ RD++
Sbjct: 82 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGKPGSEQPRDEKQ 141
Query: 61 NKTKGFGFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCGD 94
K +GFV + DP Q IR N ++ + F +F GD
Sbjct: 142 QKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNQNKEDTSGHFHIFVGD 201
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 202 LSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 256
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 195 FHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 254
Query: 83 EMNDDF 88
M+ ++
Sbjct: 255 SMDGEW 260
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + ++ F++ AKV+R+K T +++G+GF+ F R +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 85 ND-----------------------------DFRLFCGDLGNDVTDELLIRTFSK-YPSF 114
N D +F GDL +VTD +L TF Y S
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMN 217
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 47/158 (29%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 81 NKEMNDDF----------------------------------------RLFCGDLGNDVT 100
EMN + +F G L +VT
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
D+ L F ++ L K+ KR GFV + +
Sbjct: 273 DDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 304
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 32/154 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 219 SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-------- 76
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 77 ----------FI-RANK-------------EMNDD-------FRLFCGDLGNDVTDELLI 105
F+ RA K +MN D L+ +L + + DE L
Sbjct: 252 YGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 35/155 (22%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F P+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--PA-L 215
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 216 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 45/165 (27%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F P+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFG--PA-LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 309 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 351
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ + L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGAAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ + L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 35/155 (22%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F P+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--PA-L 215
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 216 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 45/165 (27%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F P+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFG--PA-LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 309 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 351
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 35/155 (22%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F P+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG--PA-L 215
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 216 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 45/165 (27%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F P+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFG--PA-LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 309 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 351
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164
++ + ++GFGFV F+ + A K +N + + D K RS
Sbjct: 133 NE--HGSRGFGFVHFETHEA---AQKAINTMNGMLLNDRKVRS 170
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 24/135 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYP----SFLKAKVVRD-----KRTNKTKGFGFVS 135
N G L ND + S YP S A ++ ++ +KGFGFV
Sbjct: 159 N-------GMLLNDR------KVRSDYPWSLASLCPATLISSCFQVMTESSHSKGFGFVC 205
Query: 136 FKDPQDFIRANKEMN 150
F P++ +A EMN
Sbjct: 206 FSSPEEATKAVTEMN 220
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I + E D L+ G+L + V D+LL F + V RDK T +G+GFV F+
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFR 78
Query: 73 DPQDF----------------IRANKEMND--DF----RLFCGDLGNDVTDELLIRTFSK 110
+ D +R NK D +F +F G+L DV ++ + TFS
Sbjct: 79 NEVDADYALKLMNMVKLYGKALRLNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSA 138
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ + + AK++RD T ++GFGFVSF
Sbjct: 139 FGNIISAKIMRDPETGLSRGFGFVSF 164
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ K+ +D +F +F G+L DV ++ + TFS + + + AK++RD T ++GFGF
Sbjct: 102 LNKSAQDRRNFDVGANVFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGF 161
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + A MN F
Sbjct: 162 VSFDTFEASDAALAAMNGQF 181
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 40/86 (46%)
Query: 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
G G SF I E N D L+ G+L + V D+LL F + V RDK
Sbjct: 6 GGGHRSFTGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKL 65
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMN 150
T +G+GFV F++ D A K MN
Sbjct: 66 TGNHQGYGFVEFRNEVDADYALKLMN 91
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|401887565|gb|EJT51549.1| non-translatable mRNA -binding protein [Trichosporon asahii var.
asahii CBS 2479]
gi|406699766|gb|EKD02963.1| non-translatable mRNA -binding protein [Trichosporon asahii var.
asahii CBS 8904]
Length = 381
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 26/162 (16%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSFKD 73
+ E L+ G++ VTD++L FS + AK+++D+ + +GFV + D
Sbjct: 5 QAAEAPKKPHLYIGNMSPRVTDQMLAEIFSVAGPVVSAKIIQDRNFHHGGYNYGFVEYTD 64
Query: 74 PQDF----------------IRAN---------KEMNDDFRLFCGDLGNDVTDELLIRTF 108
+ IR N ++ F +F GDL +V D++L + F
Sbjct: 65 MRSAEQALTTLNGRKIFDSEIRVNWAYQGQGNREDTQHHFHVFVGDLSPEVNDDILGKAF 124
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+K+ S +A+V+ D + K++G+GF+SF+D D +A MN
Sbjct: 125 AKFASLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIATMN 166
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ F +F GDL +V D++L + F+K+ S +A+V+ D + K++G+GF+SF+D D +
Sbjct: 101 QHHFHVFVGDLSPEVNDDILGKAFAKFASLSEARVMWDMNSGKSRGYGFLSFRDKADAEQ 160
Query: 80 ANKEMNDDF 88
A MN ++
Sbjct: 161 AIATMNGEW 169
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|34395215|dbj|BAC83714.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
gi|50508741|dbj|BAD31317.1| RNA Binding Protein-like [Oryza sativa Japonica Group]
Length = 206
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKD--PQDFIRAN 81
L+ GDL + + L F+ + + KV+R+K++ ++G+GF+ F+ ++ AN
Sbjct: 15 LWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALAN 74
Query: 82 ------------------------KEMNDD---FRLFCGDLGNDVTDELLIRTF-SKYPS 113
+ DD +F GDL +DVTD +L F + YPS
Sbjct: 75 FNGRMMLNVDQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPS 134
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F D + RA EMN
Sbjct: 135 VRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMN 171
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D + +F GDL +DVTD +L F + YPS AKVV DK T ++KG+GFV F
Sbjct: 99 RRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFG 158
Query: 73 DPQDFIRANKEMN 85
D + RA EMN
Sbjct: 159 DENEQTRAMTEMN 171
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
++ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 NE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L D+ ++ L FS++
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQ 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD +++GFGF++F+ ++ +A MN
Sbjct: 219 SVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMN 252
Score = 52.8 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L D+ ++ L FS++ KV+RD +++GFGF++F+ ++ +A M
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y AKV+ + ++ +KGFGFV F P++ +A EMN
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 EDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +N ++ L+ +L + + D+ L FS Y AKV+ + ++ +KGFGFV F P
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSP 343
Query: 75 QDFIRANKEMN 85
++ +A EMN
Sbjct: 344 EEATKAVTEMN 354
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 136 NFEMIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 195
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
++ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 196 NE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 239
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 221
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L D+ ++ L FS++
Sbjct: 222 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNVYVKNLHMDMDEQGLQDLFSQFGKMQ 281
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD +++GFGFV+F+ ++ +A MN
Sbjct: 282 SVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMN 315
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L D+ ++ L FS++ KV+RD +++GFGFV+F+ ++ +A M
Sbjct: 256 VYVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 314
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 315 NGKEVRGQLLYVGRAQKRAERQSELKRRFEQVKQERQNRYQGVNLYVKNLDDSINDERLK 374
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y AKV+ + ++ +KGFGFV F P++ +A EMN
Sbjct: 375 EVFSAYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 417
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 EDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +N ++ L+ +L + + DE L FS Y AKV+ + ++ +KGFGFV F P
Sbjct: 349 ERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVMTE--SSHSKGFGFVCFSSP 406
Query: 75 QDFIRANKEMN 85
++ +A EMN
Sbjct: 407 EEATKAVTEMN 417
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +LG D+ DE L FSK+ L
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMN 252
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD+ T ++ G+ V+F+ +D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ ++ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 52/175 (29%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +LG D+ DE L FSK+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 85 N-------------------------------------------------DDFRLFCGDL 95
N L+ +L
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNL 311
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + DE L + FS + + AKV + ++KGFGFV F P++ +A EMN
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMN 364
>gi|115479619|ref|NP_001063403.1| Os09g0462700 [Oryza sativa Japonica Group]
gi|113631636|dbj|BAF25317.1| Os09g0462700, partial [Oryza sativa Japonica Group]
Length = 441
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 29/167 (17%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF- 71
+ + E + ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 105 VPRGGGQEENKTIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFY 164
Query: 72 --------------------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELL 104
P A+ M D D +F GDL +DV D L
Sbjct: 165 SHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTL 224
Query: 105 IRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ TFSK Y S AKVV D T ++KG+GFV F D + A EMN
Sbjct: 225 LETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMN 271
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F Y L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFGNYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D T K+KGFGFVSF+ +D +A +MN
Sbjct: 219 SVRVMTDD-TGKSKGFGFVSFERHEDAQKAVDDMN 252
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F Y L +V+ D T K+KGFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDEKLKELFGNYGPALSVRVMTDD-TGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|400595086|gb|EJP62896.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 468
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVSF 71
++ + N L+ G L VT+++L + F K++ DK KGF GFV +
Sbjct: 59 RRAAPEPNKRALYVGGLDQRVTEDVLRQIFETTGHVQNVKIIPDK---NAKGFNYGFVEY 115
Query: 72 KDP----------------QDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLI 105
DP Q IR N ++ + F +F GDL N+V D++L
Sbjct: 116 DDPGAADRAMQTLNGRRVHQSEIRVNWAYQANSSGKEDTSGHFHIFVGDLSNEVNDDILT 175
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+ FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 176 QAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 208
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V D++L + FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 158 FHIFVGDLSNEVNDDILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALS 217
Query: 83 EMNDDF 88
M+ ++
Sbjct: 218 SMDGEW 223
>gi|406606196|emb|CCH42378.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 174
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D FRLF G+LG+D D +L+++F YPS K KV D + N+ KG+GFV+F DP D++
Sbjct: 89 DPKHFRLFVGNLGSDANDGILMQSFGVYPSLTKVKVPMDHK-NENKGYGFVAFSDPNDYL 147
Query: 79 RANKEMNDDF 88
+A KE+N +
Sbjct: 148 KAFKELNGKY 157
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG+D D +L+++F YPS K KV D + N+ KG+GFV+F DP D+++A K
Sbjct: 93 FRLFVGNLGSDANDGILMQSFGVYPSLTKVKVPMDHK-NENKGYGFVAFSDPNDYLKAFK 151
Query: 148 EMN 150
E+N
Sbjct: 152 ELN 154
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
gi|297310199|gb|EFH40623.1| hypothetical protein ARALYDRAFT_495572 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + ++ F++ AKV+R+K T +++G+GF+ F + R +
Sbjct: 66 LWIGDLQQWMDENYIMSVFNQSGEAQSAKVIRNKLTGQSEGYGFIEFINHSVAERVLQTY 125
Query: 85 ND-----------------------------DFRLFCGDLGNDVTDELLIRTFSK-YPSF 114
N D +F GDL +VTD +L TF Y S
Sbjct: 126 NGAQMPSTEQTFRLNWAQAGAGEKRHQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 185
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 186 KGAKVVVDRTTGRSKGYGFVRFADENEQMRAMTEMN 221
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 47/158 (29%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 157 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDRTTGRSKGYGFVRFADENEQMRA 216
Query: 81 NKEMNDDF----------------------------------------RLFCGDLGNDVT 100
EMN + +F G L +VT
Sbjct: 217 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGGNAGDSDPNNTTIFVGGLDANVT 276
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
D+ L F ++ L K+ KR GFV + +
Sbjct: 277 DDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 308
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D K+KGFGFVSF+ +D +A +MN
Sbjct: 219 SIRVMTDD-GGKSKGFGFVSFERHEDAQKAVDDMN 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L +V+ D K+KGFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-GGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 34/160 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK--TKGFGFVSFKDP-------Q 75
++ G+L VTD +L F+ + K++ ++ N +GFV F DP Q
Sbjct: 20 IYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAIQ 79
Query: 76 DF---------IRAN----------------KEMNDDFRLFCGDLGNDVTDELLIRTFSK 110
D IRAN ++ + F +F GDL ++ DE L + FS+
Sbjct: 80 DMNGRKIFNYEIRANWAQPSANINPPLQMTKEDTTNHFHVFVGDLAAEINDEKLAQAFSE 139
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + +A V+ D + K++GFGFV+F+D D RA MN
Sbjct: 140 FGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATMN 179
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 13 IKKTCEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
++ T ED N F +F GDL ++ DE L + FS++ + +A V+ D + K++GFGFV+F
Sbjct: 106 LQMTKEDTTNHFHVFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAF 165
Query: 72 KDPQDFIRANKEMNDDF 88
+D D RA MN ++
Sbjct: 166 RDKTDAERAIATMNGEW 182
>gi|125558527|gb|EAZ04063.1| hypothetical protein OsI_26200 [Oryza sativa Indica Group]
Length = 323
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKD--PQDFIRAN 81
L+ GDL + + L F+ + + KV+R+K++ ++G+GF+ F+ ++ AN
Sbjct: 130 LWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALAN 189
Query: 82 ------------------------KEMNDD---FRLFCGDLGNDVTDELLIRTF-SKYPS 113
+ DD +F GDL +DVTD +L F + YPS
Sbjct: 190 FNGRMMLNVDQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPS 249
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F D + RA EMN
Sbjct: 250 VRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMN 286
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D + +F GDL +DVTD +L F + YPS AKVV DK T ++KG+GFV F
Sbjct: 214 RRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFG 273
Query: 73 DPQDFIRANKEMN 85
D + RA EMN
Sbjct: 274 DENEQTRAMTEMN 286
>gi|388851874|emb|CCF54468.1| related to RNA-binding protein [Ustilago hordei]
Length = 278
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + RLF GDLGNDV+DE L F KYPSF KA+VVR K +GFV+F DP+DF+
Sbjct: 153 DPSHKRLFVGDLGNDVSDETLTAAFDKYPSFSKARVVRKKDGKGKG-YGFVAFADPEDFL 211
Query: 79 RANKEMNDDF 88
RA KEM+ +
Sbjct: 212 RAWKEMDGKY 221
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF GDLGNDV+DE L F KYPSF KA+VVR K +GFV+F DP+DF+RA KE
Sbjct: 158 RLFVGDLGNDVSDETLTAAFDKYPSFSKARVVRKKDGKGKG-YGFVAFADPEDFLRAWKE 216
Query: 149 MN 150
M+
Sbjct: 217 MD 218
>gi|255560914|ref|XP_002521470.1| RNA binding protein, putative [Ricinus communis]
gi|223539369|gb|EEF40960.1| RNA binding protein, putative [Ricinus communis]
Length = 2256
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 32/166 (19%)
Query: 6 PGPISSWIKKTCEDENDF--------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 57
P P ++++T DE F ++F G L + T ++ F KY + +++D
Sbjct: 1903 PQPFVDYVRRTI-DETPFYKREARRRKIFIGGLARETTTAQFVKHFGKYGEITDSVIMKD 1961
Query: 58 KRTNKTKGFGFVSFKDPQ---DFIRANKEMND-----------------DF---RLFCGD 94
++T + +GFGFV++ DP I+ + +N DF ++F G
Sbjct: 1962 RKTGQPRGFGFVTYADPSVVDQVIQDSHVINGKQVEIKRTIPKGAIGARDFKTKKIFVGG 2021
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ VT+ F +Y ++ +++RD TN+++GFGF++F Q
Sbjct: 2022 IPTTVTEVEFKEFFMQYGEVIEHQIMRDHSTNRSRGFGFITFDTEQ 2067
>gi|125600441|gb|EAZ40017.1| hypothetical protein OsJ_24455 [Oryza sativa Japonica Group]
Length = 323
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKD--PQDFIRAN 81
L+ GDL + + L F+ + + KV+R+K++ ++G+GF+ F+ ++ AN
Sbjct: 130 LWIGDLQYWMDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALAN 189
Query: 82 ------------------------KEMNDD---FRLFCGDLGNDVTDELLIRTF-SKYPS 113
+ DD +F GDL +DVTD +L F + YPS
Sbjct: 190 FNGRMMLNVDQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPS 249
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV DK T ++KG+GFV F D + RA EMN
Sbjct: 250 VRGAKVVFDKVTGRSKGYGFVRFGDENEQTRAMTEMN 286
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
++ +D + +F GDL +DVTD +L F + YPS AKVV DK T ++KG+GFV F
Sbjct: 214 RRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFDKVTGRSKGYGFVRFG 273
Query: 73 DPQDFIRANKEMN 85
D + RA EMN
Sbjct: 274 DENEQTRAMTEMN 286
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 25/160 (15%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
+D +LF L + + + L F +Y + V+ DK + K++GFGFV+FK
Sbjct: 62 ASKDPAHRKLFVRGLAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMD 121
Query: 76 DFIRANKEMNDDF-------------------------RLFCGDLGNDVTDELLIRTFSK 110
+A KE + +L+ G L D ++ L+ FSK
Sbjct: 122 SAQKALKEPSKTIDGRITVSNLAVASTGPGQSADQAQRKLYIGGLSYDTANDKLLEVFSK 181
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y + V DK TNK++GF FV+FK + RA KE N
Sbjct: 182 YGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPN 221
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L N + D+ L TFS + + L KVV
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKVVC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 124 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 167
>gi|116197887|ref|XP_001224755.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
gi|88178378|gb|EAQ85846.1| hypothetical protein CHGG_07099 [Chaetomium globosum CBS 148.51]
Length = 886
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 19/137 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
EN ++F G L + TD+ L FS++ L+ V+RD T +++GFGF++FKDP+
Sbjct: 386 ENTRKMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDGATGRSRGFGFLTFKDPKTVNI 445
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + + TD F+++ + A ++
Sbjct: 446 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLM 505
Query: 121 RDKRTNKTKGFGFVSFK 137
DK T + +GFGFV+F+
Sbjct: 506 MDKDTGRPRGFGFVTFE 522
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++F G L + TD+ L FS++ L+ V+RD T +++GFGF++FKDP+
Sbjct: 390 KMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDGATGRSRGFGFLTFKDPK 441
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 468 EQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 522
>gi|353232562|emb|CCD79917.1| putative heterogeneous nuclear ribonucleoprotein [Schistosoma
mansoni]
Length = 315
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 33/157 (21%)
Query: 14 KKTCEDENDFR------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
++ CE+ ND R LF G L T+ L +S++ + V++D RTN+++GFG
Sbjct: 3 RRNCEN-NDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFG 61
Query: 68 FVSFKDPQ--DFIRANKEMNDD------------------------FRLFCGDLGNDVTD 101
F+++K+P+ D +AN+ D +LF G L DVT
Sbjct: 62 FITYKEPEMVDAAQANRPHEIDGKTVEAKRAMPREDSNSPESHMTVTKLFVGGLKKDVTH 121
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
E L FSKY + + +VV K + +++GFGFV+F D
Sbjct: 122 EELREYFSKYGNITECEVVAWKESGESRGFGFVTFDD 158
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 79 RANKEMND----DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
R N E ND FR LF G L T+ L +S++ + V++D RTN+++GFGF
Sbjct: 3 RRNCENNDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGF 62
Query: 134 VSFKDPQ--DFIRANKEMNEFPHLFVG 158
+++K+P+ D +AN+ PH G
Sbjct: 63 ITYKEPEMVDAAQANR-----PHEIDG 84
>gi|215765810|dbj|BAG87507.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 345
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 21 IWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGF 80
Query: 72 --------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFSK-YPSFL 115
P A+ M D D +F GDL +DV D L+ TFSK Y S
Sbjct: 81 AGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVK 140
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + A EMN
Sbjct: 141 GAKVVIDANTGRSKGYGFVRFGDDNEKTHAMTEMN 175
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 46/165 (27%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DV D L+ TFSK Y S AKVV D T ++KG+GFV F D +
Sbjct: 110 SDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTH 169
Query: 80 ANKEMNDDF------------------------------------RLFCGDLGNDVTDEL 103
A EMN + +F G L +V+++
Sbjct: 170 AMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDD 229
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA 145
L +TFS+Y K+ K+ GFV F K+ +D ++
Sbjct: 230 LRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQG 268
>gi|50289655|ref|XP_447259.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526568|emb|CAG60192.1| unnamed protein product [Candida glabrata]
Length = 416
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 5 RPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 64
+P + + K + +D L+ G+L +T++LL + F K++ D + N+
Sbjct: 40 KPSVVPASATKGGRETSDRVLYVGNLDKSITEDLLKQYFQAGGPIQNVKIIEDMK-NEYV 98
Query: 65 GFGFVSFKDPQDFIRANKEMN------------------------DDFRLFCGDLGNDVT 100
+ FV + D A + +N D F LF GDL DV
Sbjct: 99 NYAFVEYIRSHDANVALQTLNGVQLENKTLKINWAFETQQAAENDDTFNLFVGDLNVDVD 158
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
DE L TF ++P+F++A V+ D +T +++G+GFVSF + ++ +A M
Sbjct: 159 DETLAGTFREFPTFIQAHVMWDMQTGRSRGYGFVSFSNQEEAQKAMDAM 207
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + + L KV
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAN 139
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRSS 165
D+ +N +KG+GFV F+ + +A +++N E ++VG + R++
Sbjct: 140 DEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTA 186
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 44/185 (23%)
Query: 8 PISSWIKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P ++ +++ E F ++ + +++ E L + FSK+ A V+ D K+KGF
Sbjct: 183 PRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDA-DGKSKGF 241
Query: 67 GFVSFKDPQDFIRANKEMND---------------------------------------- 86
GFV+F++P+D +A EM++
Sbjct: 242 GFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRY 301
Query: 87 -DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
L+ +L + V D++L + F Y AKV+ D ++KGFGFV F+ P + +A
Sbjct: 302 QGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKA 360
Query: 146 NKEMN 150
EMN
Sbjct: 361 VTEMN 365
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN--- 81
+F +L + ++ + TFS + + L KV D+ +N +KG+GFV F+ + +A
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKV 166
Query: 82 ----------------------KEMNDDFRLFCG----DLGNDVTDELLIRTFSKYPSFL 115
+EM + R F + +++ E L + FSK+
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKIT 226
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
A V+ D K+KGFGFV+F++P+D +A EM+E+
Sbjct: 227 SAAVMVDA-DGKSKGFGFVAFENPEDAEKAVTEMHEY 262
>gi|224121456|ref|XP_002330832.1| predicted protein [Populus trichocarpa]
gi|222872634|gb|EEF09765.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VTD+LL F+ K++R +++ +GFV + D
Sbjct: 38 VYVGNIHVNVTDKLLAEVFATAGPLAGCKLIRKDKSS----YGFVDYHDRSSAALAIMTL 93
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L FS +PS A+V+
Sbjct: 94 HGRQLYGEALKVNWAYASGQREDTSGHFHIFVGDLSPEVTDATLYACFSVFPSCSDARVM 153
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF++ Q+ A +N+ ++G+ + R + KG
Sbjct: 154 WDHKTGRSKGYGFVSFRNQQE---AQSAINDLTGKWLGNRQIRCNWATKG 200
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS +PS A+V+ D +T ++KG+GF
Sbjct: 107 WAYASGQREDTSGHFHIFVGDLSPEVTDATLYACFSVFPSCSDARVMWDHKTGRSKGYGF 166
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ Q+ A +ND
Sbjct: 167 VSFRNQQE---AQSAIND 181
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFI--- 78
+F +L DV D L +Y S L AK++ D +K+KGFGF+SF+D + DF+
Sbjct: 194 VFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDD--SKSKGFGFISFEDHEAANDFVKTI 251
Query: 79 -------------RANK------EMNDDFR--------------LFCGDLGNDVTDELLI 105
RA K E+ F L+ +L +++ DE L
Sbjct: 252 NGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS+Y + AKV+ D + N +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSRYGTITSAKVMSDDKAN-SKGFGFVCFSSPEEATKAVTEMN 355
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 24/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ LL FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + L KVV
Sbjct: 73 NFDTLKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVT 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D+ KG+GFV F+ + +A +++N
Sbjct: 133 DE-NGVNKGYGFVHFETQEAANKAIEKVN 160
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 22/146 (15%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I + E D L+ G+L + V D+LL F + V RDK T +G+GFV F
Sbjct: 19 ITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFT 78
Query: 73 DPQDF----------------IRANKEMND--DF----RLFCGDLGNDVTDELLIRTFSK 110
+ D +R NK D +F +F G+L DV ++ + TFS
Sbjct: 79 NEVDADYALKLMNMVKLYGKSLRLNKSAQDRRNFDVGANIFLGNLDPDVDEKTIYDTFST 138
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ + L AK++RD T ++GFGFVSF
Sbjct: 139 FGNILTAKIMRDPETGISRGFGFVSF 164
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ K+ +D +F +F G+L DV ++ + TFS + + L AK++RD T ++GFGF
Sbjct: 102 LNKSAQDRRNFDVGANIFLGNLDPDVDEKTIYDTFSTFGNILTAKIMRDPETGISRGFGF 161
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF + A MN F
Sbjct: 162 VSFDTFEASDAALAAMNGQF 181
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 39/86 (45%)
Query: 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
G G SF I E N D L+ G+L + V D+LL F + V RDK
Sbjct: 6 GGGHRSFAGGGADITQVYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKL 65
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMN 150
T +G+GFV F + D A K MN
Sbjct: 66 TGNHQGYGFVEFTNEVDADYALKLMN 91
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
++ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 NE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L +V ++ L FS++ + KV+RD +++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y AKV+ + ++ +KGFGFV F P++ +A EMN
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L +V ++ L FS++ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQ 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD +++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMN 252
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 EDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +N ++ L+ +L + + DE L FS Y AKV+ + ++ +KGFGFV F P
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSP 343
Query: 75 QDFIRANKEMN 85
++ +A EMN
Sbjct: 344 EEATKAVTEMN 354
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
++ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 NE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L +V ++ L FS++ + KV+RD +++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y AKV+ + ++ +KGFGFV F P++ +A EMN
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L +V ++ L FS++ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQ 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD +++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMN 252
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 EDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +N ++ L+ +L + + DE L FS Y AKV+ + ++ +KGFGFV F P
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSP 343
Query: 75 QDFIRANKEMN 85
++ +A EMN
Sbjct: 344 EEATKAVTEMN 354
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F +Y + L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K++GFGFVSF+ +D +A +MN
Sbjct: 219 SVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMN 252
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F +Y + L KV+ D K++GFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|408392881|gb|EKJ72170.1| hypothetical protein FPSE_07657 [Fusarium pseudograminearum CS3096]
Length = 484
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 38/162 (23%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+E+L + F K++ DK + +GFV + D
Sbjct: 73 RRAAPEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNA-RGYNYGFVEYDD 131
Query: 74 PQDFIRANKEMN-------------------------------------DDFRLFCGDLG 96
P RA + +N + F +F GDL
Sbjct: 132 PGAAERAMQTLNGRRVHQSVPYPDTTRNSKEIRVNWAYQSNTTNKEDTSNHFHIFVGDLS 191
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 192 NEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRD 233
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D + +A
Sbjct: 181 NHFHIFVGDLSNEVNDEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKA 240
Query: 81 NKEMNDDF 88
M+ ++
Sbjct: 241 LSSMDGEW 248
>gi|336271351|ref|XP_003350434.1| hypothetical protein SMAC_02147 [Sordaria macrospora k-hell]
gi|380090956|emb|CCC11489.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 495
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 40/176 (22%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT---------- 63
++ + N L+ G L VT+++L + F K++ DK K
Sbjct: 82 RRAAPEPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGKPGSPEQPHDAQ 141
Query: 64 --KGF--GFVSFKDP----------------QDFIRAN----------KEMNDDFRLFCG 93
KG+ GFV + DP Q IR N ++ + F +F G
Sbjct: 142 QQKGYNYGFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNQNKEDTSGHFHIFVG 201
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
DL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A M
Sbjct: 202 DLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSM 257
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F+D D +A
Sbjct: 196 FHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALS 255
Query: 83 EMNDDF 88
M+ ++
Sbjct: 256 SMDGEW 261
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +MN
Sbjct: 219 SVKVMTDD-SGKSKGFGFVSFERHEDAQKAVDDMN 252
>gi|297829856|ref|XP_002882810.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297328650|gb|EFH59069.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 231
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 25/138 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFIRA 80
++F G L D T+ + + F KY + ++RD+ T + +GFGF++F DP I
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 81 NKEMND-------------------DF---RLFCGDLGNDVTDELLIRTFSKYPSFLKAK 118
N +N DF ++F G + + VT++ L FSKY + ++ +
Sbjct: 80 NHIINGKQVEIKRTIPKGAGGNQSKDFKTKKIFVGGIPSTVTEDELKDFFSKYGNVVEHQ 139
Query: 119 VVRDKRTNKTKGFGFVSF 136
V+RD TN+++GFGFV F
Sbjct: 140 VIRDHETNRSRGFGFVIF 157
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
++F G L D T+ + + F KY + ++RD+ T + +GFGF++F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D T K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMN 252
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
>gi|397620654|gb|EJK65830.1| hypothetical protein THAOC_13271 [Thalassiosira oceanica]
Length = 281
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
ENDFRLF G+L D+ L F KYPSF A+V+ +K K++G+GFVS DP+D +
Sbjct: 177 ENDFRLFVGNLAKDLKQHHLEEAFGKYPSFAMARVMFNKNDGKSRGYGFVSVMDPKDCAK 236
Query: 80 ANKEMNDDF 88
A +EMN +
Sbjct: 237 AIREMNQSW 245
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFRLF G+L D+ L F KYPSF A+V+ +K K++G+GFVS DP+D +A
Sbjct: 178 NDFRLFVGNLAKDLKQHHLEEAFGKYPSFAMARVMFNKNDGKSRGYGFVSVMDPKDCAKA 237
Query: 146 NKEMNE 151
+EMN+
Sbjct: 238 IREMNQ 243
>gi|344304858|gb|EGW35090.1| hypothetical protein SPAPADRAFT_133000 [Spathaspora passalidarum
NRRL Y-27907]
Length = 147
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 16 TCEDEN--DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
T D N FRLF G+LG D D LL F KY S K V D++T K KG+GFV+F D
Sbjct: 51 TAADWNPKHFRLFVGNLGEDANDALLDNAFKKYESMSKVHVPVDRKTGKNKGYGFVAFAD 110
Query: 74 PQDFIRANKEMNDDF 88
D+++A KEMN +
Sbjct: 111 ANDYLKAFKEMNGKY 125
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D D LL F KY S K V D++T K KG+GFV+F D D+++A K
Sbjct: 60 FRLFVGNLGEDANDALLDNAFKKYESMSKVHVPVDRKTGKNKGYGFVAFADANDYLKAFK 119
Query: 148 EMN 150
EMN
Sbjct: 120 EMN 122
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + + L KV
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAN 139
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRSS 165
D+ +N +KG+GFV F+ + +A +++N E ++VG + R++
Sbjct: 140 DEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTA 186
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 44/185 (23%)
Query: 8 PISSWIKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P ++ +++ E F ++ + +++ E L + FSK+ A V+ D K+KGF
Sbjct: 183 PRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKITSAAVMVDA-DGKSKGF 241
Query: 67 GFVSFKDPQDFIRANKEMND---------------------------------------- 86
GFV+F++P+D +A EM++
Sbjct: 242 GFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRY 301
Query: 87 -DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
L+ +L + V D++L + F Y AKV+ D ++KGFGFV F+ P + +A
Sbjct: 302 QGVNLYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKA 360
Query: 146 NKEMN 150
EMN
Sbjct: 361 VTEMN 365
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN--- 81
+F +L + ++ + TFS + + L KV D+ +N +KG+GFV F+ + +A
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKV 166
Query: 82 ----------------------KEMNDDFRLFCG----DLGNDVTDELLIRTFSKYPSFL 115
+EM + R F + +++ E L + FSK+
Sbjct: 167 NGMLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEKLFSKFGKIT 226
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
A V+ D K+KGFGFV+F++P+D +A EM+E+
Sbjct: 227 SAAVMVDA-DGKSKGFGFVAFENPEDAEKAVTEMHEY 262
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRRSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 33/156 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + +A ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKY-PSF 114
N +D ++F G + G+D+ DE L F +Y
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNFGDDMDDERLREYFEQYVGKT 218
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L KV+ D+ K+KGFGFVSF+ +D +A EMN
Sbjct: 219 LSVKVMMDE-GGKSKGFGFVSFERHEDAQKAVDEMN 253
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 43/166 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++ + G+D+ DE L F +Y L KV+ D+ K+KGFGFVSF+ +D +A E
Sbjct: 193 VYIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDE-GGKSKGFGFVSFERHEDAQKAVDE 251
Query: 84 MN---------------------------------------DDFRLFCGDLGNDVTDELL 104
MN L+ +L +++ DE L
Sbjct: 252 MNTKELNGRAIYVGRAQKKAERQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNINDERL 311
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ ++ +++GFGFV F P++ +A EMN
Sbjct: 312 WKEFSPFGTITSAKVMMEE--GRSRGFGFVCFSSPEEATKAVTEMN 355
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K+KGFGFVSF+ +D +A +MN
Sbjct: 219 SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDDMN 252
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|42571787|ref|NP_973984.1| RNA-binding protein 47C [Arabidopsis thaliana]
gi|332194052|gb|AEE32173.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 310
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ GDL + + + L +F+ + KV+R+K ++G+GFV F+ + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 83 EMN-----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYP 112
E N D +F GDL DV+D LL TFS KYP
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 81 NKEMN 85
EMN
Sbjct: 256 MTEMN 260
>gi|297846966|ref|XP_002891364.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
gi|297337206|gb|EFH67623.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
Length = 443
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 33/159 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYP---SFLKAKVVRDKRTNKTKGFGFVSF---------- 71
++ GDL + + + L +F+ + KV+R+K ++G+GFV F
Sbjct: 110 IWVGDLHHWMDETYLNSSFASADGEIQIVSVKVIRNKHNGLSEGYGFVEFDSHDVADKVL 169
Query: 72 --------KDPQDFIRAN-----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KY 111
D + R N + D +F GDL DV+D LL TFS KY
Sbjct: 170 QEFNGTTMPDTEQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDTLLHETFSEKY 229
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
PS AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 230 PSVKAAKVVIDANTGRSKGYGFVRFGDENERTKAMTEMN 268
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 48/157 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 204 DLSIFVGDLAPDVSDTLLHETFSEKYPSVKAAKVVIDANTGRSKGYGFVRFGDENERTKA 263
Query: 81 NKEMND-----------------------------------------DFRLFCGDLGNDV 99
EMN + +F G L + V
Sbjct: 264 MTEMNGVKCSSRAMRIGPATPRKTTGYQQQGGYMPNGALTRPEGDTLNTTIFVGGLDSSV 323
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
TD+ L + FS++ + K+ KG GFV F
Sbjct: 324 TDDDLRQPFSEFGEIVSVKIPVG------KGCGFVQF 354
>gi|307108302|gb|EFN56542.1| hypothetical protein CHLNCDRAFT_144188, partial [Chlorella
variabilis]
Length = 330
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E + L+ G+L VT++ L F+ + KV++DK T + G+GF F D
Sbjct: 179 EGNKTLYLGNLHPFVTEQTLQEVFAGLGGITELKVIKDKATGVSAGYGFAKFTDSSSAQA 238
Query: 80 A------------------------NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
A +E+ F F GDL +DVTD +L F P
Sbjct: 239 ALDKVAKTVLFGQEARINWAFQKEQKEEVATHFHAFVGDLSSDVTDAMLHGAFQNCPGCS 298
Query: 116 KAKVVRDKRTNKTKGFGFVSFK 137
A+V+ D T +++G+GFVSF+
Sbjct: 299 DARVMWDHATGRSRGYGFVSFR 320
>gi|295669832|ref|XP_002795464.1| TIA1 cytotoxic granule-associated RNA binding protein
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285398|gb|EEH40964.1| TIA1 cytotoxic granule-associated RNA binding protein
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 501
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK +
Sbjct: 81 MSPTSAGGFVRRAAPEPNKRALYVGGLDPRVTEDILRQIFETTGHVQSVKIIPDKNEIRV 140
Query: 64 KGFGFVSFKDPQDFIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 122
+ + S + NKE ++ F +F GDL N+V DE+L++ FS + S +A+V+ D
Sbjct: 141 N-WAYQSNSN-------NKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWD 192
Query: 123 KRTNKTKGFGFVSFKDPQDFIRANKEM 149
+T +++G+GFV+F++ D +A M
Sbjct: 193 MKTGRSRGYGFVAFRERSDAEKALSSM 219
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 155 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEK 214
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 215 ALSSMDGEW 223
>gi|150951177|ref|XP_001387451.2| RNA-binding protein [Scheffersomyces stipitis CBS 6054]
gi|149388382|gb|EAZ63428.2| RNA-binding protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 165
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 11 SWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW +T D FRLF G+LG D D+LL FSKY S K KV D ++ K KGFGF
Sbjct: 65 SWEDQTLLEWDPKHFRLFVGNLGPDANDQLLHSAFSKYASMSKVKVPVDTKSGKNKGFGF 124
Query: 69 VSFKDPQDFIRANKEMNDDF 88
V+F D D+ +A K+MN +
Sbjct: 125 VAFADANDYFQAFKDMNGKY 144
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D D+LL FSKY S K KV D ++ K KGFGFV+F D D+ +A K
Sbjct: 79 FRLFVGNLGPDANDQLLHSAFSKYASMSKVKVPVDTKSGKNKGFGFVAFADANDYFQAFK 138
Query: 148 EMN 150
+MN
Sbjct: 139 DMN 141
>gi|123485827|ref|XP_001324580.1| spliceosomal protein [Trichomonas vaginalis G3]
gi|121907465|gb|EAY12357.1| spliceosomal protein, putative [Trichomonas vaginalis G3]
Length = 221
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 25/158 (15%)
Query: 18 EDEN-DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
D+N D LF D+ VT+E+L F + + + RD+ TN+ G+ FV F+ QD
Sbjct: 6 HDQNKDCTLFLCDISEHVTEEILTELFMQVGPVVFVNIPRDRITNRMNGYAFVEFRTEQD 65
Query: 77 FIRA------------------------NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYP 112
+ A E++ +L+ G+L DV D L++TF ++
Sbjct: 66 CMYALSVMQGVKLFGVPLKLSANSTPSTGDELDVGAKLYIGNLSQDVNDGNLLQTFRQFG 125
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ L A+VV D T K+ G GFV++ +A K MN
Sbjct: 126 NVLHARVVVDPATGKSLGHGFVAYDSFDAADKAKKAMN 163
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 6 PGPISSWIKKTCEDENDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
P +S+ + DE D +L+ G+L DV D L++TF ++ + L A+VV D T K+
Sbjct: 82 PLKLSANSTPSTGDELDVGAKLYIGNLSQDVNDGNLLQTFRQFGNVLHARVVVDPATGKS 141
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDF 88
G GFV++ +A K MN ++
Sbjct: 142 LGHGFVAYDSFDAADKAKKAMNGEY 166
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KV+
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVML 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ ++KGFGFV F P++ +A EMN
Sbjct: 133 ED--GRSKGFGFVCFSSPEEATKAVTEMN 159
>gi|308081546|ref|NP_001183096.1| uncharacterized protein LOC100501457 [Zea mays]
gi|238009292|gb|ACR35681.1| unknown [Zea mays]
gi|414871228|tpg|DAA49785.1| TPA: hypothetical protein ZEAMMB73_160597 [Zea mays]
Length = 359
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS++ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMN 175
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS++ + +A + MN+
Sbjct: 158 FVSYESFESSDQAIEAMNNQH 178
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D T K+KGFGFVSF+ +D +A +EM
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 257
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 258 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 317
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 318 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 360
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 164
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L FSKY L
Sbjct: 165 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 224
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K+KGFGFVSF+ +D +A +EMN
Sbjct: 225 SVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMN 258
>gi|218192181|gb|EEC74608.1| hypothetical protein OsI_10216 [Oryza sativa Indica Group]
Length = 416
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + L F+ K++R+K T+ +G+GF+ F
Sbjct: 18 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 77
Query: 72 -----KDPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
+ R N + D +F GDL DVTD LL TF YPS
Sbjct: 78 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYPSVK 137
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 138 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 172
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 108 DHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRA 167
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 168 MTEMNG---MYC 176
>gi|15220233|ref|NP_175180.1| RNA-binding protein 47C [Arabidopsis thaliana]
gi|75337807|sp|Q9SX79.1|RB47C_ARATH RecName: Full=Polyadenylate-binding protein RBP47C;
Short=Poly(A)-binding protein RBP47C; AltName:
Full=RNA-binding protein 47C; Short=AtRBP47C
gi|5668812|gb|AAD46038.1|AC007519_23 Contains 3 PF|00076 RNA recognition motif domains. ESTs gb|R30092,
gb|R30093, gb|AA394338, gb|N65719 and gb|AA597577 come
from this gene [Arabidopsis thaliana]
gi|12744993|gb|AAK06876.1|AF344325_1 putative DNA binding protein [Arabidopsis thaliana]
gi|14334552|gb|AAK59684.1| putative DNA binding protein [Arabidopsis thaliana]
gi|17065624|gb|AAL33806.1| putative DNA binding protein [Arabidopsis thaliana]
gi|332194053|gb|AEE32174.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 432
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ GDL + + + L +F+ + KV+R+K ++G+GFV F+ + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 83 EMN-----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYP 112
E N D +F GDL DV+D LL TFS KYP
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 48/157 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 81 NKEMND-----------------------------------------DFRLFCGDLGNDV 99
EMN + +F G L + V
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
TDE L + F+++ + K+ KG GFV F
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQF 346
>gi|108706453|gb|ABF94248.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|215694482|dbj|BAG89475.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 416
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K T+ +G+GF+ F + + +
Sbjct: 18 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 77
Query: 85 N----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF YPS
Sbjct: 78 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYPSVK 137
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 138 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 172
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 108 DHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRA 167
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 168 MTEMNG---MYC 176
>gi|242042043|ref|XP_002468416.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
gi|241922270|gb|EER95414.1| hypothetical protein SORBIDRAFT_01g045570 [Sorghum bicolor]
Length = 415
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K T+ +G+GF+ F + + +
Sbjct: 17 LWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQTY 76
Query: 85 N----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF YPS
Sbjct: 77 NGTQMPGTEHTFRLNWASFSSGERRPDPGSDHSIFVGDLAPDVTDYLLQETFRVNYPSVR 136
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 171
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL DVTD LL TF YPS AKVV D T ++KG+GFV F D + R
Sbjct: 106 SDHSIFVGDLAPDVTDYLLQETFRVNYPSVRGAKVVTDPNTGRSKGYGFVKFADENEKNR 165
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 166 AMTEMNG---VYC 175
>gi|290997888|ref|XP_002681513.1| predicted protein [Naegleria gruberi]
gi|284095137|gb|EFC48769.1| predicted protein [Naegleria gruberi]
Length = 292
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 44/169 (26%)
Query: 25 LFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKD--------- 73
L+ GDL + + DE + + F+ PS K+++D+ T K+ G+GFV F
Sbjct: 3 LWMGDLDDSMDDEYVKKLFANDIRPSINSVKIIKDRNTGKSIGYGFVEFASIEIAKAVLE 62
Query: 74 ----------PQDFIRANKEMNDD----------------------FRLFCGDLGNDVTD 101
P R N + +F GDL DV D
Sbjct: 63 SYAGKPIPTLPNKIYRLNWAAQNQGSNPLFSSQPGGKPSSGGKENIVSIFVGDLAPDVND 122
Query: 102 ELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+L +TF ++YPS AKVV D ++ +KG+GFV F D D +R+ EM
Sbjct: 123 YMLEQTFRNRYPSVRGAKVVMDPKSGISKGYGFVKFADEDDMMRSMTEM 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
EN +F GDL DV D +L +TF ++YPS AKVV D ++ +KG+GFV F D D +
Sbjct: 106 ENIVSIFVGDLAPDVNDYMLEQTFRNRYPSVRGAKVVMDPKSGISKGYGFVKFADEDDMM 165
Query: 79 RANKEM 84
R+ EM
Sbjct: 166 RSMTEM 171
>gi|224137382|ref|XP_002327112.1| predicted protein [Populus trichocarpa]
gi|222835427|gb|EEE73862.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 77/181 (42%), Gaps = 51/181 (28%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD LL TF SKYPS AKVV D T ++KG+GFV F D
Sbjct: 178 KRSDNAPDLSIFVGDLAADVTDSLLQETFVSKYPSVKAAKVVFDANTGRSKGYGFVRFGD 237
Query: 74 PQDFIRANKEMN--------------------------------------------DDFR 89
+ +A EMN ++
Sbjct: 238 DSERTQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQGGYGSNGASAQGFQSDGDSNNTT 297
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G L +VTDE L + FS+Y + K+ KG GFV F + + A +++
Sbjct: 298 IFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVG------KGCGFVQFANRDNAEEALQKL 351
Query: 150 N 150
N
Sbjct: 352 N 352
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 28/168 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 21 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 80
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + + L KV
Sbjct: 81 NFDVMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAN 140
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRSS 165
D+ +N +KG+GFV F+ + +A +++N E ++VG + R++
Sbjct: 141 DEESN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRAA 187
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 44/185 (23%)
Query: 8 PISSWIKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P ++ +++ E F +F + +++ E L + F+K+ V+ D K+KGF
Sbjct: 184 PRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKITSCAVMSDA-DGKSKGF 242
Query: 67 GFVSFKDPQDFIRANKEMND---------------------------------------- 86
GFV+F++P+D +A EM++
Sbjct: 243 GFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERMQRY 302
Query: 87 -DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
L+ +L + V DE+L + F Y AKV+ D ++KGFGFV F+ P + +A
Sbjct: 303 QGVNLYVKNLDDTVDDEVLRQNFESYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKA 361
Query: 146 NKEMN 150
EMN
Sbjct: 362 VTEMN 366
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA---- 80
+F +L + ++ + TFS + + L KV D+ +N +KG+GFV F+ + +A
Sbjct: 109 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESN-SKGYGFVHFETEESAQKAIEKV 167
Query: 81 ---------------------NKEMNDDFRLFCGDLGNDVTDEL----LIRTFSKYPSFL 115
+EM + R F + DEL L + F+K+
Sbjct: 168 NGMLLEGKKVYVGKFQPRAARMREMGETARRFTNVFIKNFADELDKEKLEKLFAKFGKIT 227
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
V+ D K+KGFGFV+F++P+D +A EM+E+
Sbjct: 228 SCAVMSDA-DGKSKGFGFVAFENPEDAEKAVNEMHEY 263
>gi|115451047|ref|NP_001049124.1| Os03g0174100 [Oryza sativa Japonica Group]
gi|113547595|dbj|BAF11038.1| Os03g0174100, partial [Oryza sativa Japonica Group]
Length = 438
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + L F+ K++R+K T+ +G+GF+ F
Sbjct: 40 LWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVAEKVLQTY 99
Query: 72 -----KDPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
+ R N + D +F GDL DVTD LL TF YPS
Sbjct: 100 NGTQMPGTEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVSYPSVK 159
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 160 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 194
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 130 DHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRA 189
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 190 MTEMNG---MYC 198
>gi|224119532|ref|XP_002331184.1| predicted protein [Populus trichocarpa]
gi|222873305|gb|EEF10436.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ K++R ++++ +GF+ + D + A +
Sbjct: 60 VYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSS----YGFIHYFDRRAAALAILSL 115
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L FS YPS A+V+
Sbjct: 116 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVM 175
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 176 WDQKTGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWAAKG 222
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 63/185 (34%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 129 WAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGF 188
Query: 69 VSFKDPQDF----------------IRAN-----KEMNDDFR------------------ 89
VSF++ QD IR N NDD +
Sbjct: 189 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWAAKGASSNDDKQSSDSKSVVELTNGTSEDC 248
Query: 90 -----------------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
++ G+L +V L R F L A V+ + R + KGFG
Sbjct: 249 KEATNNEAPENNPQYTTVYVGNLAPEVAQPDLHRHFHA----LGAGVIEEVRVQRDKGFG 304
Query: 133 FVSFK 137
FV F
Sbjct: 305 FVRFS 309
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 18 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 78 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 137
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 138 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 25/150 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L VTD +L FS + K+++DK T + G+GFV F D + A + +
Sbjct: 24 LYVGNLHPFVTDAMLQEIFSTLGQVGEIKIIKDKLTGLSAGYGFVQFLDHRAADMALQSL 83
Query: 85 N------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F++F GDL +D+ D+LL F A+V+
Sbjct: 84 NGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDINDKLLCEAFQSC-GCADARVM 142
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D T ++KG+GFVSFK D +A +M+
Sbjct: 143 WDHNTGRSKGYGFVSFKTRADAEQALSQMS 172
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 48/169 (28%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ + F++F GDL +D+ D+LL F A+V+ D T ++KG+GFVSFK D
Sbjct: 106 DSASQFQIFVGDLASDINDKLLCEAFQSC-GCADARVMWDHNTGRSKGYGFVSFKTRADA 164
Query: 78 IRANKEMN-----------------------------------------DDFRLFCGDLG 96
+A +M+ ++ ++ G+L
Sbjct: 165 EQALSQMSGTMLGSRRIRCGWAQHKQENSQASFAAVDRVSTLSRAQADPENANVYVGNLA 224
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DV+D L S++ + L K+ R G+ F F D +RA
Sbjct: 225 PDVSDAELQTAVSQFGAVLDVKIYR------KGGYAFAQFASHADAVRA 267
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 31/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + L F KV+R+K+T++++G+GF+ F +
Sbjct: 59 LWIGDLQYWMDENYLYTCFGNTGEVTSVKVIRNKQTSQSEGYGFIEFNTRASAERVLQTY 118
Query: 75 QDFIRAN--------------------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
Q I N ++ D +F GDL DVTD LL TF ++Y S
Sbjct: 119 QGAIMPNGGQSYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 178
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T ++KG+GFV F D + +RA EM
Sbjct: 179 VKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEM 214
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 48/163 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D D +F GDL DVTD LL TF ++Y S AKVV D+ T ++KG+GFV F D +
Sbjct: 147 DDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE 206
Query: 77 FIRANKEMN-----------------------------------------DDFRLFCGDL 95
+RA EM ++ +F G+L
Sbjct: 207 QMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQAKASYSNTPGGQSENDPNNTTIFVGNL 266
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+VTD+ L + FS+Y + K+ KR GFV F D
Sbjct: 267 DPNVTDDHLRQVFSQYGELVHVKIPSGKRC------GFVQFSD 303
>gi|18394471|ref|NP_564018.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|9665134|gb|AAF97318.1|AC007843_21 Putative RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
gi|111074422|gb|ABH04584.1| At1g17370 [Arabidopsis thaliana]
gi|332191458|gb|AEE29579.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 419
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VT+ LL F+ K++R ++++ ++ G +S
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD +L FS YP+ A+V+ D++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQK 175
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A ++E ++G + R + KG
Sbjct: 176 TGRSRGFGFVSFRNQQD---AQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E + F +F GDL +VTD +L FS YP+ A+V+ D++T +++GFGF
Sbjct: 125 WAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGF 184
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ QD A E+ +
Sbjct: 185 VSFRNQQDAQTAIDEITGKW 204
>gi|194701250|gb|ACF84709.1| unknown [Zea mays]
Length = 424
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 50 VYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 105
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 106 HGRHIYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 165
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 166 WDNKTGRSRGYGFVSFRNQQEAETAITEM 194
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 119 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 178
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 179 VSFRNQQEAETAITEMTGKW 198
>gi|82621158|gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 82/205 (40%), Gaps = 62/205 (30%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S++PS AKVV D T +KG+GFV F
Sbjct: 117 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFG 176
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN +
Sbjct: 177 DESERSRAMTEMNGIYCSSRPMRVGVATPKKPSAQQQFSSQAVILSGGYASNGSATHGSQ 236
Query: 89 --------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+F G L +DVTDE L ++F+++ + K+ KG GFV F D
Sbjct: 237 SDGDSSNTTIFVGGLDSDVTDEELRQSFTQFGEVVSVKI------PAGKGCGFVQFSDRS 290
Query: 141 DFIRANKEMNEFPHLFVGDLKTRSS 165
A + + + +G R S
Sbjct: 291 S---AQEAIQKLSGAIIGKQAVRLS 312
>gi|212274429|ref|NP_001130902.1| uncharacterized protein LOC100192006 [Zea mays]
gi|194690404|gb|ACF79286.1| unknown [Zea mays]
gi|413934109|gb|AFW68660.1| hypothetical protein ZEAMMB73_687460 [Zea mays]
Length = 357
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKTLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS++ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYESFESSDQAIEAMN 175
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS++ + +A + MN+
Sbjct: 158 FVSYESFESSDQAIEAMNNQH 178
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMN 252
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D T K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGAITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L N + ++ L TFS + S L +KVV
Sbjct: 73 NFEVIKGQPIRIMWSHRDPGLRKSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVY 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
++ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 NE--HGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR 176
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L +V ++ L FS++ + KV+RD +++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDERLK 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y AKV+ + ++ +KGFGFV F P++ +A EMN
Sbjct: 312 EVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L +V ++ L FS++ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLHANVDEQRLQDLFSQFGNMQ 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD +++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDS-NGQSRGFGFVNFEKHEEAQKAVDHMN 252
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 EDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +N ++ L+ +L + + DE L FS Y AKV+ + ++ +KGFGFV F P
Sbjct: 286 ERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSP 343
Query: 75 QDFIRANKEMN 85
++ +A EMN
Sbjct: 344 EEATKAVTEMN 354
>gi|226528727|ref|NP_001148487.1| mRNA 3-UTR binding protein [Zea mays]
gi|195619730|gb|ACG31695.1| mRNA 3-UTR binding protein [Zea mays]
Length = 447
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 74 VYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 129
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 130 HGRHVYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 189
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 190 WDNKTGRSRGYGFVSFRNQQEAETAIAEM 218
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 143 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 202
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 203 VSFRNQQEAETAIAEMTGKW 222
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|326473644|gb|EGD97653.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton tonsurans CBS 112818]
Length = 470
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P +++++ + N L+ G L VT+++L + F K++ DK +
Sbjct: 83 MSPTAAGGYVRRSAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNEIRV 142
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
+ + Q + ++ + F +F GDL N+V DE+L++ FS S +A+V+ D
Sbjct: 143 N-WAY------QSNTASKEDTSSHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDM 195
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEM 149
+T +++G+GFV+F++ D +A M
Sbjct: 196 KTGRSRGYGFVAFRERADAEKALSSM 221
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+ F +F GDL N+V DE+L++ FS S +A+V+ D +T +++G+GFV+F++ D +
Sbjct: 157 SSHFHIFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEK 216
Query: 80 ANKEMNDDF 88
A M+ ++
Sbjct: 217 ALSSMDGEW 225
>gi|331230054|ref|XP_003327692.1| hypothetical protein PGTG_09226 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306682|gb|EFP83273.1| hypothetical protein PGTG_09226 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 153
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
RLF GDL +V+D+ L F K+ +KA+VV DK T K K +GFVS+KDP+DF++A K
Sbjct: 20 LRLFVGDLALEVSDDGLAAAFLKWSLLVKAQVVWDKVTTKLKSYGFVSYKDPEDFMKAWK 79
Query: 83 EMNDDF 88
EM +
Sbjct: 80 EMKGKY 85
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
RLF GDL +V+D+ L F K+ +KA+VV DK T K K +GFVS+KDP+DF++A K
Sbjct: 20 LRLFVGDLALEVSDDGLAAAFLKWSLLVKAQVVWDKVTTKLKSYGFVSYKDPEDFMKAWK 79
Query: 148 EM 149
EM
Sbjct: 80 EM 81
>gi|186478580|ref|NP_001117301.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
gi|332191459|gb|AEE29580.1| oligouridylate binding protein 1B [Arabidopsis thaliana]
Length = 416
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VT+ LL F+ K++R ++++ ++ G +S
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD +L FS YP+ A+V+ D++
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQK 175
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A ++E ++G + R + KG
Sbjct: 176 TGRSRGFGFVSFRNQQD---AQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 60/200 (30%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E + F +F GDL +VTD +L FS YP+ A+V+ D++T +++GFGF
Sbjct: 125 WAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGF 184
Query: 69 VSFKDPQDF----------------IRAN------------------------------- 81
VSF++ QD IR N
Sbjct: 185 VSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDT 244
Query: 82 -----KEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
E N + ++ G+L +V+ L R F L A V+ + R + KGFGFV
Sbjct: 245 TNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS----LGAGVIEEVRVQRDKGFGFVR 300
Query: 136 FKDPQDFIRANKEMNEFPHL 155
+ + A + N +L
Sbjct: 301 YSTHVEAALAIQMGNTHSYL 320
>gi|256080846|ref|XP_002576687.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 315
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 26/141 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
+LF G L T+ L +S++ + V++D RTN+++GFGF+++K+P+ D +AN
Sbjct: 18 KLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGFITYKEPEMVDAAQAN 77
Query: 82 KEMNDD------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ D +LF G L DVT E L FSKY + +
Sbjct: 78 RPHEIDGKTVEAKRAMPREDSNSPESHMTVTKLFVGGLKKDVTHEELREYFSKYGNITEC 137
Query: 118 KVVRDKRTNKTKGFGFVSFKD 138
+VV K + +++GFGFV+F D
Sbjct: 138 EVVAWKESGESRGFGFVTFDD 158
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 79 RANKEMND----DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
R N E ND FR LF G L T+ L +S++ + V++D RTN+++GFGF
Sbjct: 3 RRNSENNDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGF 62
Query: 134 VSFKDPQ--DFIRANKEMNEFPHLFVG 158
+++K+P+ D +AN+ PH G
Sbjct: 63 ITYKEPEMVDAAQANR-----PHEIDG 84
>gi|226505614|ref|NP_001148740.1| LOC100282356 [Zea mays]
gi|195621754|gb|ACG32707.1| mRNA 3-UTR binding protein [Zea mays]
gi|224030425|gb|ACN34288.1| unknown [Zea mays]
gi|413921566|gb|AFW61498.1| mRNA 3-UTR binding protein [Zea mays]
Length = 449
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 75 VYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 130
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 131 HGRHIYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 190
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 191 WDNKTGRSRGYGFVSFRNQQEAETAITEM 219
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 144 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 203
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 204 VSFRNQQEAETAITEMTGKW 223
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + + +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G+GFV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSK+ + +V+ D+ + +GFGFVSF++ +D +A EM
Sbjct: 193 VYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDE-SGGGRGFGFVSFENHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N ++G+GFV F+ RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHDAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L FSK+ +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNAT 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ + +GFGFVSF++ +D +A EMN
Sbjct: 219 SVRVMTDE-SGGGRGFGFVSFENHEDAQKAVDEMN 252
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D + K+KGFGFVSF+ +D RA EMN
Sbjct: 219 SIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMN 252
>gi|242082185|ref|XP_002445861.1| hypothetical protein SORBIDRAFT_07g027050 [Sorghum bicolor]
gi|241942211|gb|EES15356.1| hypothetical protein SORBIDRAFT_07g027050 [Sorghum bicolor]
Length = 447
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 73 VYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 128
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 129 HGRHIYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 188
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 189 WDNKTGRSRGYGFVSFRNQQEAETAITEM 217
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 142 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 201
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 202 VSFRNQQEAETAITEMTGKW 221
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 25/159 (15%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +D L+ G+L + ++LL + F K++ DK+ N + F+ + D
Sbjct: 79 ETSDRVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNNNVN-YAFIEYLKSHDAN 137
Query: 79 RANKEMN------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSF 114
A + +N D F LF GDL DV DE L F ++PS+
Sbjct: 138 VALQTLNGIQIEGKTVRINWAFQSQQTTNSDDTFNLFVGDLNVDVDDETLSHAFDQFPSY 197
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153
++A V+ D +T +++G+GFVSF D + A M P
Sbjct: 198 VQAHVMWDMQTGRSRGYGFVSFADQEQAQEAMNVMQGMP 236
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++T ++ F LF GDL DV DE L F ++PS+++A V+ D +T +++G+GFVSF D
Sbjct: 162 QQTTNSDDTFNLFVGDLNVDVDDETLSHAFDQFPSYVQAHVMWDMQTGRSRGYGFVSFAD 221
Query: 74 PQDFIRANKEMN 85
+ +A + MN
Sbjct: 222 QE---QAQEAMN 230
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K++
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|357113824|ref|XP_003558701.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 418
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K TN +G+GF+ F + + +
Sbjct: 19 LWIGDLQFWADEAYLYNCFAHTGEVQSVKIIRNKVTNLPEGYGFIEFISHEAAEKVLQTY 78
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF Y S
Sbjct: 79 NGAQMPGSEHTFRLNWASFSSGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRVNYSSVR 138
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 139 GAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMN 173
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F D + RA
Sbjct: 109 DHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRA 168
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 169 MSEMNG---VYC 177
>gi|223948725|gb|ACN28446.1| unknown [Zea mays]
gi|414869520|tpg|DAA48077.1| TPA: mRNA 3-UTR binding protein [Zea mays]
Length = 446
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 73 VYVGNVNPNVTESLLIEVFQSAGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 128
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 129 HGRHVYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 188
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 189 WDNKTGRSRGYGFVSFRNQQEAETAITEM 217
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 142 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 201
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 202 VSFRNQQEAETAITEMTGKW 221
>gi|50294199|ref|XP_449511.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528825|emb|CAG62487.1| unnamed protein product [Candida glabrata]
Length = 513
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + T++ L FSKY + ++ K+++D T +++GFGF+SF P
Sbjct: 131 KMFIGGLNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAPSSVDEVVKT 190
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA +E + ++F G LG DV + FS++ + + A+++ DK
Sbjct: 191 QHILDGKVIDPKRAIPREEQDKTGKIFVGGLGTDVRPKEFEEYFSQWGTIIDAQLMLDKD 250
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGFV++ P
Sbjct: 251 TGRSRGFGFVTYDSP 265
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + ++F G LG DV + FS++ + + A+++ DK T +++GFGFV++ P
Sbjct: 209 EQDKTGKIFVGGLGTDVRPKEFEEYFSQWGTIIDAQLMLDKDTGRSRGFGFVTYDSPD-- 266
Query: 78 IRANKEMNDDFRLFCG 93
A K +R F G
Sbjct: 267 -AAEKVCESRYREFKG 281
Score = 44.3 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
++ ++F G L + T++ L FSKY + ++ K+++D T +++GFGF+SF P
Sbjct: 128 ENCKMFIGGLNWETTEDGLREYFSKYGNVVELKIMKDPNTGRSRGFGFLSFDAP 181
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDIKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDIKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 35/155 (22%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG---PAL 215
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 216 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 249
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 45/165 (27%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFG---PALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 309 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 351
>gi|326495566|dbj|BAJ85879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 479
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------- 71
E + ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 149 QEENKTIWVGDLHYWMDENYLHTCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAE 208
Query: 72 --------------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFS- 109
P A+ M D D +F GDL +DV D L+ TFS
Sbjct: 209 KVLDGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTALLETFSS 268
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+Y S AKVV D T ++KG+GFV F D + A EMN
Sbjct: 269 RYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTNAMTEMN 309
>gi|29841163|gb|AAP06176.1| SJCHGC06206 protein [Schistosoma japonicum]
gi|226473310|emb|CAX71341.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473312|emb|CAX71342.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473314|emb|CAX71343.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|226473318|emb|CAX71345.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 313
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 26/141 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
+LF G L T+ L +S++ + V++D RTN+++GFGF+++K+P+ D +AN
Sbjct: 18 KLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGFITYKEPEMVDAAQAN 77
Query: 82 KEMNDD------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ D +LF G L DVT E L FSKY + +
Sbjct: 78 RPHEIDGKTVEAKRAMPREDSNSPESHMTVTKLFVGGLKKDVTHEELREYFSKYGNITEC 137
Query: 118 KVVRDKRTNKTKGFGFVSFKD 138
+VV K + +++GFGFV+F D
Sbjct: 138 EVVAWKESGESRGFGFVTFDD 158
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 79 RANKEMND----DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
R N E ND FR LF G L T+ L +S++ + V++D RTN+++GFGF
Sbjct: 3 RRNSENNDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGF 62
Query: 134 VSFKDPQ--DFIRANKEMNEFPHLFVG 158
+++K+P+ D +AN+ PH G
Sbjct: 63 ITYKEPEMVDAAQANR-----PHEIDG 84
>gi|224073594|ref|XP_002304117.1| predicted protein [Populus trichocarpa]
gi|222841549|gb|EEE79096.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ K++R ++++ +GF+ + D + A +
Sbjct: 55 VYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSS----YGFIHYFDRRAAALAILSL 110
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L FS YPS A+V+
Sbjct: 111 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVM 170
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 171 WDQKTGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWASKG 217
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 124 WAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGF 183
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ QD A +ND
Sbjct: 184 VSFRNQQD---AQSAIND 198
>gi|344301066|gb|EGW31378.1| hypothetical protein SPAPADRAFT_154438 [Spathaspora passalidarum
NRRL Y-27907]
Length = 507
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L D T+E L FSKY + L ++RD T +++GFGF++F+DP+
Sbjct: 173 KMFVGGLNWDTTEEGLRDYFSKYGNVLDYTIMRDSATGRSRGFGFLTFEDPKSVDEVIKV 232
Query: 76 DFIR-----------ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D I A +E + ++F G + VT++ F++Y S + A+++ DK
Sbjct: 233 DHILDGKLIDPKRAIAREEQDRVGKIFVGGIDPLVTEKEFYDFFAQYGSIIDAQLMVDKD 292
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 293 TGRSRGFGFITYDSP 307
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
D ++F G L D T+E L FSKY + L ++RD T +++GFGF++F+DP
Sbjct: 170 DSGKMFVGGLNWDTTEEGLRDYFSKYGNVLDYTIMRDSATGRSRGFGFLTFEDP 223
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 29/172 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ D R + M
Sbjct: 318 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLETM 377
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L +TFS + + L KV+
Sbjct: 378 NLDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLEKSIDNKALYKTFSAFGNILSCKVIS 437
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP----HLFVGDLKTRSSITLK 169
D+ N +KG+GFV F++ Q +A ++MN ++VG K+R L+
Sbjct: 438 DE--NGSKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELE 487
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L +TFS + + L KV+ D+ N +KG+GFV F++ Q +A ++M
Sbjct: 406 IFIKNLEKSIDNKALYKTFSAFGNILSCKVISDE--NGSKGYGFVHFENQQAADKAIEKM 463
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N ++ +++ G + G D+ ++ L F K+ L
Sbjct: 464 NGVRLNNLKVYVGRFKSRKERELELGARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHAL 523
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVS++ +D RA EMN
Sbjct: 524 SVKVMTDE-SGKSKGFGFVSYEKHEDAQRAVDEMN 557
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ ++ L F K+ L KV+ D+ + K+KGFGFVS++ +D RA EM
Sbjct: 498 VYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDE-SGKSKGFGFVSYEKHEDAQRAVDEM 556
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 557 NGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLR 616
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++GFGFV F P++ +A EMN
Sbjct: 617 KAFSPFGTITSAKVMMEG--GHSRGFGFVCFSAPEEAAKAVSEMN 659
>gi|226473316|emb|CAX71344.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 236
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 26/141 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
+LF G L T+ L +S++ + V++D RTN+++GFGF+++K+P+ D +AN
Sbjct: 18 KLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGFITYKEPEMVDAAQAN 77
Query: 82 KEMNDD------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ D +LF G L DVT E L FSKY + +
Sbjct: 78 RPHEIDGKTVEAKRAMPREDSNSPESHMTVTKLFVGGLKKDVTHEELREYFSKYGNITEC 137
Query: 118 KVVRDKRTNKTKGFGFVSFKD 138
+VV K + +++GFGFV+F D
Sbjct: 138 EVVAWKESGESRGFGFVTFDD 158
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 79 RANKEMND----DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
R N E ND FR LF G L T+ L +S++ + V++D RTN+++GFGF
Sbjct: 3 RRNSENNDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGF 62
Query: 134 VSFKDPQ--DFIRANKEMNEFPHLFVG 158
+++K+P+ D +AN+ PH G
Sbjct: 63 ITYKEPEMVDAAQANR-----PHEIDG 84
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA---- 80
L+ GDL DV+D L+ FS++ S +V +D T K+ +G+++F PQD IRA
Sbjct: 14 LYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELK 73
Query: 81 -NKEMND------------DFR------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +N D R LF +L + + L F KY + L +KVV
Sbjct: 74 NNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVT 133
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTRSSITLKG 170
+ K+KG+GFV F+ + A +++N + L+VG +S L G
Sbjct: 134 SE-DGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPG 185
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 44/167 (26%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L DV++ L FS + + + +D +KGFGFV++ +P D +A + M
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDN-NGMSKGFGFVNYDNPDDAKKAMEAM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N ++ ++ + V+DE L
Sbjct: 252 NGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
FS + AK++RD + +KGFGFV F P++ ANK +N F
Sbjct: 312 DHFSACGTITSAKIMRDDK-GISKGFGFVCFSTPEE---ANKAVNTF 354
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-------- 76
LF +L + + L F KY + L +KVV + K+KG+GFV F+ +
Sbjct: 102 LFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSE-DGKSKGYGFVQFESEESSKVAIEKL 160
Query: 77 --FIRANKEM--------------NDDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ A+KE+ D R L+ +L DV++ L FS + +
Sbjct: 161 NGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSL 220
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ +D +KGFGFV++ +P D +A + MN
Sbjct: 221 VIAKDN-NGMSKGFGFVNYDNPDDAKKAMEAMN 252
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 41/166 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G ++ D L F Y A+V+ D+ T K++GFGFVSF++P + +A KE+
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTDQ-TGKSRGFGFVSFENPDNAEQAVKEL 252
Query: 85 NDD----------------------------------------FRLFCGDLGNDVTDELL 104
ND L+ +L + + DE L
Sbjct: 253 NDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDDERL 312
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R F+ Y + AKV+ D ++KGFGFV F P++ +A EMN
Sbjct: 313 RREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMN 358
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 31/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
+F +L D+ ++ + TFS + + L +V D++ N ++G+GFV F+ +
Sbjct: 101 VFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGN-SRGYGFVHFETEEAANEAINKV 159
Query: 76 -------------DFI-RANKE--MNDDFRLFCG----DLGNDVTDELLIRTFSKYPSFL 115
F+ R+ +E M D RLF + G ++ D L F Y
Sbjct: 160 NGMLLNEKKVFVGKFVPRSERERMMGDKARLFTNVYVKNFGEELDDGKLKEMFEVYGKIT 219
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
A+V+ D+ T K++GFGFVSF++P + +A KE+N+
Sbjct: 220 SARVMTDQ-TGKSRGFGFVSFENPDNAEQAVKELND 254
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 34/170 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L F + L +V RD + ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 85 NDD-----------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L D+ ++ + TFS + + L +V
Sbjct: 73 NFEPLKNRPMRIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVAT 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF-------PHLFVGDLKTRS 164
D++ N ++G+GFV F+ + AN+ +N+ +FVG RS
Sbjct: 133 DEQGN-SRGYGFVHFETEE---AANEAINKVNGMLLNEKKVFVGKFVPRS 178
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 33/170 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 85 NDDF---------------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
N D +F +L + ++ L TFS + + L
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGGGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 132
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
KVV D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 KVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 180
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 105 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 162
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 163 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 222
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 223 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 256
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 255
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 256 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 315
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 316 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 358
>gi|257215987|emb|CAX83143.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215989|emb|CAX83144.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215991|emb|CAX83145.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215993|emb|CAX83146.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215995|emb|CAX83147.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215997|emb|CAX83148.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257215999|emb|CAX83149.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216001|emb|CAX83150.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216003|emb|CAX83151.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
gi|257216005|emb|CAX83152.1| Heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Schistosoma
japonicum]
Length = 168
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 26/141 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
+LF G L T+ L +S++ + V++D RTN+++GFGF+++K+P+ D +AN
Sbjct: 18 KLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGFITYKEPEMVDAAQAN 77
Query: 82 KEMNDD------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ D +LF G L DVT E L FSKY + +
Sbjct: 78 RPHEIDGKTVEAKRAMPREDSNSPESHMTVTKLFVGGLKKDVTHEELREYFSKYGNITEC 137
Query: 118 KVVRDKRTNKTKGFGFVSFKD 138
+VV K + +++GFGFV+F D
Sbjct: 138 EVVAWKESGESRGFGFVTFDD 158
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 79 RANKEMND----DFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
R N E ND FR LF G L T+ L +S++ + V++D RTN+++GFGF
Sbjct: 3 RRNSENNDRRTEQFRKLFIGGLTPLTTEAKLKDFYSQWGEIVDVVVMKDGRTNRSRGFGF 62
Query: 134 VSFKDPQ--DFIRANKEMNEFPHLFVG 158
+++K+P+ D +AN+ PH G
Sbjct: 63 ITYKEPEMVDAAQANR-----PHEIDG 84
>gi|115477340|ref|NP_001062266.1| Os08g0520300 [Oryza sativa Japonica Group]
gi|42408523|dbj|BAD09702.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|42409171|dbj|BAD10437.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113624235|dbj|BAF24180.1| Os08g0520300 [Oryza sativa Japonica Group]
gi|215697677|dbj|BAG91671.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640879|gb|EEE69011.1| hypothetical protein OsJ_27962 [Oryza sativa Japonica Group]
Length = 447
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 75 VYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 130
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 131 HGRHICGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVM 190
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 191 WDNKTGRSRGYGFVSFRNQQEAETAITEM 219
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS YPS A+V+ D +T +++G+GF
Sbjct: 144 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGF 203
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 204 VSFRNQQEAETAITEMTGKW 223
>gi|326534302|dbj|BAJ89501.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 75 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 130
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS YPS A+V+
Sbjct: 131 HGRHIYGQAIKVNWAFASTQREDTSGHFHIFVGDLSSEVNDATLYACFSTYPSCSDARVM 190
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 191 WDNKTGRSRGYGFVSFRNQQEAETAITEM 219
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
F +F GDL ++V D L FS YPS A+V+ D +T +++G+GFVSF++ Q+ A
Sbjct: 157 HFHIFVGDLSSEVNDATLYACFSTYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAI 216
Query: 82 KEMNDDF 88
EM +
Sbjct: 217 TEMTGKW 223
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + +++L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + +++L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|296416057|ref|XP_002837697.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633580|emb|CAZ81888.1| unnamed protein product [Tuber melanosporum]
Length = 691
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TDE L FS+Y ++ V+RD T +++GFGF++FKDP+
Sbjct: 165 KEDGKMFIGGLNWETTDESLKEYFSQYGEVVECTVMRDGPTGRSRGFGFLTFKDPKTVNI 224
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + + T+ F+++ L A ++
Sbjct: 225 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATETDFREYFTQFGRVLDATLM 284
Query: 121 RDKRTNKTKGFGFVSF 136
DK T + +GFGFV+F
Sbjct: 285 MDKDTGRPRGFGFVTF 300
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
G G + DPQ + + +D ++F G L + TDE L FS+Y ++ V+RD
Sbjct: 147 GMGAAGYGDPQ--ATGSPAIKEDGKMFIGGLNWETTDESLKEYFSQYGEVVECTVMRDGP 204
Query: 125 TNKTKGFGFVSFKDPQ 140
T +++GFGF++FKDP+
Sbjct: 205 TGRSRGFGFLTFKDPK 220
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E ++F G + + T+ F+++ L A ++ DK T + +GFGFV+F
Sbjct: 247 EQEKTSKIFVGGVSQEATETDFREYFTQFGRVLDATLMMDKDTGRPRGFGFVTF 300
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 36/167 (21%)
Query: 6 PGPISSWIKKTCEDE-------------NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA 52
P P +++KT ++ + ++F G L + T I+ F KY +
Sbjct: 1946 PQPFVDYVRKTIDETPYYKREGRRRINPQNTKIFIGGLARETTIAQFIKHFGKYGEITDS 2005
Query: 53 KVVRDKRTNKTKGFGFVSFKDPQ--------DFIRANKEM------------NDDFR--- 89
+++D++T + +GFGF+++ DP I K++ + DFR
Sbjct: 2006 VIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKK 2065
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+F G + ++VT++ F++Y +++RD TN+++GFGF++F
Sbjct: 2066 IFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITF 2112
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L + T I+ F KY + +++D++T + +GFGF+++ DP +
Sbjct: 1977 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPS----VVDK 2032
Query: 149 MNEFPHLFVG 158
+ E PH+ G
Sbjct: 2033 VIEDPHIING 2042
>gi|255550383|ref|XP_002516242.1| nucleolysin tia-1, putative [Ricinus communis]
gi|223544728|gb|EEF46244.1| nucleolysin tia-1, putative [Ricinus communis]
Length = 358
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL FS K++R ++++ +GFV + D +
Sbjct: 46 VYVGNIHPQVTEPLLQEVFSNTGLIEGCKLIRKEKSS----YGFVDYFDRRSAALSIVTL 101
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L +F+ +PS A+V+
Sbjct: 102 NGRHLFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYASFALFPSCSDARVM 161
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +NE ++G + R + KG
Sbjct: 162 WDQKTGRSRGFGFVSFRNQQD---AQNAINELNGKWIGSRQIRCNWAAKG 208
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 62/184 (33%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L +F+ +PS A+V+ D++T +++GFGF
Sbjct: 115 WAYASSQREDTSGHFNIFVGDLSPEVTDATLYASFALFPSCSDARVMWDQKTGRSRGFGF 174
Query: 69 VSFKDPQDF----------------IRAN------------------------------- 81
VSF++ QD IR N
Sbjct: 175 VSFRNQQDAQNAINELNGKWIGSRQIRCNWAAKGTTSNDDKQSSDAKSVVELTNGTSEDS 234
Query: 82 KEMNDDF--------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
+E NDD ++ G+L +VT L R F L A + D R + KGFGF
Sbjct: 235 QEKNDDAPENNPQYTTVYVGNLAPEVTSVDLHRHFYG----LGAGTIEDVRVQRDKGFGF 290
Query: 134 VSFK 137
V +
Sbjct: 291 VRYS 294
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +LG D+ DE L F ++ L
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEMN 252
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD+ T ++ G+ V+F+ +D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ ++ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 52/175 (29%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +LG D+ DE L F ++ L KV+ D+ + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEM 251
Query: 85 NDD-------------------------------------------------FRLFCGDL 95
N L+ +L
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + DE L + FS + + AKV + ++KGFGFV F P++ +A EMN
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMN 364
>gi|340914891|gb|EGS18232.1| hypothetical protein CTHT_0062490 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 700
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 19/133 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 226 KMFIGGLNWETTDESLRNYFSQFGEVVECTVMRDSATGRSRGFGFLTFKDPKVVNIVMVK 285
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA E ++F G + + TD FS++ + A ++ DK
Sbjct: 286 EHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSPETTDHEFREYFSQFGRVVDATLMMDKD 345
Query: 125 TNKTKGFGFVSFK 137
T + +GFGFV+F+
Sbjct: 346 TGRPRGFGFVTFE 358
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 226 KMFIGGLNWETTDESLRNYFSQFGEVVECTVMRDSATGRSRGFGFLTFKDPK 277
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD FS++ + A ++ DK T + +GFGFV+F+
Sbjct: 304 EQEKTSKIFVGGVSPETTDHEFREYFSQFGRVVDATLMMDKDTGRPRGFGFVTFE 358
>gi|225430808|ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
Length = 373
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L VT+ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGFVS+
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFVSY 161
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ E N D + G+L VT+ELL F + + V +D+ TN +G+GFV F+ +
Sbjct: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
Query: 141 DFIRANKEMN 150
D A K +N
Sbjct: 78 DADYAIKVLN 87
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS+ + A + MN +
Sbjct: 158 FVSYDSFEASDAAIEAMNGQY 178
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +LG D+ DE L F ++ L
Sbjct: 159 NGMFLNDHKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFGRFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEMN 252
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD+ T ++ G+ V+F+ +D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ ++ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSR 176
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 52/175 (29%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +LG D+ DE L F ++ L KV+ D+ + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVEEM 251
Query: 85 NDD-------------------------------------------------FRLFCGDL 95
N L+ +L
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + DE L + FS + + AKV + ++KGFGFV F P++ +A EMN
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMN 364
>gi|356547577|ref|XP_003542187.1| PREDICTED: DAZ-associated protein 1-like [Glycine max]
Length = 352
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 23/136 (16%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFIRA 80
++F G L D T E ++ F KY + +++D+ T + +GFGF+++ DP I+
Sbjct: 19 KIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQE 78
Query: 81 NKEMN-----------------DDF---RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N +N +DF ++F G + V+++ L FSKY ++ +++
Sbjct: 79 NHVVNGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEII 138
Query: 121 RDKRTNKTKGFGFVSF 136
RD T +++GFGF+ F
Sbjct: 139 RDHTTKRSRGFGFIVF 154
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFIRA 145
++F G L D T E ++ F KY + +++D+ T + +GFGF+++ DP I+
Sbjct: 19 KIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQE 78
Query: 146 NKEMN 150
N +N
Sbjct: 79 NHVVN 83
>gi|392575337|gb|EIW68471.1| hypothetical protein TREMEDRAFT_18044, partial [Tremella
mesenterica DSM 1558]
Length = 175
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 4 LRPGPISSWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T D + FRLF GD+ NDV + +L F+KYPS+ K KVV+D +
Sbjct: 40 IRKGNGKTWEDPTLLDWDPKWFRLFVGDVSNDVNERVLDEAFNKYPSYCKCKVVKDHLSL 99
Query: 62 KTKGFGFVSFKDPQDFIRANKE 83
K+K + F++FKDP+DF+RA KE
Sbjct: 100 KSK-YAFIAFKDPEDFLRAWKE 120
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF GD+ NDV + +L F+KYPS+ K KVV+D + K+K + F++FKDP+DF+RA K
Sbjct: 61 FRLFVGDVSNDVNERVLDEAFNKYPSYCKCKVVKDHLSLKSK-YAFIAFKDPEDFLRAWK 119
Query: 148 E 148
E
Sbjct: 120 E 120
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|452840783|gb|EME42721.1| hypothetical protein DOTSEDRAFT_73510 [Dothistroma septosporum
NZE10]
Length = 529
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 19/138 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 98 KEDGKMFIGGLNWETTDESLKNYFSQFGEVIECTVMRDGATGRSRGFGFLTFKDPKTVNT 157
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + D T+ F K+ L A ++
Sbjct: 158 VMVKEHQLDGKLIDPKRAIPRDEQERTAKIFVGGVSQDATESDFKEFFMKFGRVLDATLM 217
Query: 121 RDKRTNKTKGFGFVSFKD 138
DK T + +GFGFV+F +
Sbjct: 218 MDKDTGRPRGFGFVTFDN 235
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 99 EDGKMFIGGLNWETTDESLKNYFSQFGEVIECTVMRDGATGRSRGFGFLTFKDPK 153
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
E E ++F G + D T+ F K+ L A ++ DK T + +GFGFV+F +
Sbjct: 180 EQERTAKIFVGGVSQDATESDFKEFFMKFGRVLDATLMMDKDTGRPRGFGFVTFDN 235
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +LG D+ DE L FS++ L
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMN 252
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD+ T ++ G+ V+F+ +D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ ++ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 52/175 (29%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +LG D+ DE L FS++ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 85 N-------------------------------------------------DDFRLFCGDL 95
N L+ +L
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNL 311
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + DE L + FS + + AKV + ++KGFGFV F P++ +A EMN
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMN 364
>gi|338762832|gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
Length = 368
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSVDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFISY 161
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ E N D + G+L V++ELL F + + V +D+ TN +G+GFV F+ +
Sbjct: 18 SAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNSHQGYGFVEFRSEE 77
Query: 141 DFIRANKEMN 150
D A K +N
Sbjct: 78 DADYAIKVLN 87
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
LF G+L DV ++LL TFS + + K++RD T ++GFGF+S+ + A +
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEA 173
Query: 84 MNDDF 88
MN +
Sbjct: 174 MNGQY 178
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L KVV
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP----HLFVGDLKTR 163
D+ N +KG+GFV F + RA ++MN P +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSR 176
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L KVV D+ N +KG+GFV F + RA ++M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFGTREAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGIPLNDCKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEMN 252
>gi|302813198|ref|XP_002988285.1| hypothetical protein SELMODRAFT_447249 [Selaginella moellendorffii]
gi|300144017|gb|EFJ10704.1| hypothetical protein SELMODRAFT_447249 [Selaginella moellendorffii]
Length = 352
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 17 CEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---- 71
+ +D R L+ GDL DE +++ + + KV+R+K T +G+GFV F
Sbjct: 10 AQARDDVRSLWIGDL-QYWMDESYLKSCFPQSTIVSTKVIRNKITGHHEGYGFVEFESHA 68
Query: 72 ---KDPQDFIRA-------------------NKEMNDDFRLFCGDLGNDVTDELLIRTF- 108
K Q F A ++ D +F GDL DVTD +L+ TF
Sbjct: 69 AAEKALQSFTGAVMPRTEQAFRLNWACVGGDKRDSGADDSIFVGDLAADVTDAMLLETFK 128
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S+YPS AKVV D + + +G+GFV F D + A EM+
Sbjct: 129 SRYPSVKSAKVVMDVNSGRCRGYGFVRFGDEAEKSSAMTEMH 170
>gi|242039481|ref|XP_002467135.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
gi|241920989|gb|EER94133.1| hypothetical protein SORBIDRAFT_01g020190 [Sorghum bicolor]
Length = 355
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS+ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS+ + +A + MN+
Sbjct: 158 FVSYDSFESSDQAIEAMNNQH 178
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD T K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD T K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS S L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
DK + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DK--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + +++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDN-SGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQDRLSRYQGVNLYVKNLDDSIDDDKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--SHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KV DK + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDK--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + +++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDN-SGRSRCFGFVNFEKHEEAQKAVVHMN 252
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L TFSKY L KV+ D + K+KGFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L TFSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +MN
Sbjct: 219 SVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDMN 252
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCR 176
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G ++ DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G ++ DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 45/165 (27%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FSK L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSKT---LSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 248
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 249 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 308
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 309 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 351
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 35/155 (22%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FSK L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSKT---L 215
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 216 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 249
>gi|159476562|ref|XP_001696380.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
gi|158282605|gb|EDP08357.1| nuclear pre-mRNA splicing factor, component of splicing factor 3b
[Chlamydomonas reinhardtii]
Length = 396
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 24/157 (15%)
Query: 4 LRPGPISSWIKKTCEDEN-DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
+ PG ++ I + +D N + ++ G+L T+EL+ F++ + + +D+ TN
Sbjct: 11 IAPGVGANLIGQHAQDRNQEATVYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNA 70
Query: 63 TKGFGFVSFKDPQD----------------FIRANKEMND------DFRLFCGDLGNDVT 100
+G+GFV FK +D IR NK D LF G+L DV
Sbjct: 71 HQGYGFVEFKGEEDADYAIKVLNMVKVYGKAIRVNKASQDKRQADVGANLFIGNLDPDVD 130
Query: 101 DELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSF 136
++LL TFS + + K++RD T ++GFGFVS+
Sbjct: 131 EKLLYDTFSAFGVIVNTPKIMRDPDTGNSRGFGFVSY 167
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
++ N + ++ G+L T+EL+ F++ + + +D+ TN +G+GFV FK +D
Sbjct: 25 QDRNQEATVYVGNLDVQTTEELVWELFTQAGPVVNVYMPKDRVTNAHQGYGFVEFKGEED 84
Query: 142 FIRANKEMN 150
A K +N
Sbjct: 85 ADYAIKVLN 93
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ + +V+F+ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + +++L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + +++L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMN 252
>gi|340515592|gb|EGR45845.1| predicted protein [Trichoderma reesei QM6a]
Length = 515
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TD+ L FS++ ++ V+RD + +++GFGF++FKDP+
Sbjct: 109 KEDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDPKTVNI 168
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + D TD+ F+++ + A ++
Sbjct: 169 VMVKEHFLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLM 228
Query: 121 RDKRTNKTKGFGFVSFK 137
DK T + +GFGFV+F+
Sbjct: 229 MDKDTGRPRGFGFVTFE 245
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TD+ L FS++ ++ V+RD + +++GFGF++FKDP+
Sbjct: 110 EDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSSGRSRGFGFLTFKDPK 164
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + D TD+ F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 191 EQEKTSKIFVGGVSQDTTDQEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 245
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ + +V+F+ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + +++L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 36/167 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + +++L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVG 158
KV+ D+ + K+KGFGFVSF+ +D +A EMN H++VG
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVG 264
>gi|194707750|gb|ACF87959.1| unknown [Zea mays]
gi|414885794|tpg|DAA61808.1| TPA: hypothetical protein ZEAMMB73_995180 [Zea mays]
Length = 433
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 29/160 (18%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------- 71
E + ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 100 EENKSVWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEK 159
Query: 72 -------------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFS-K 110
P A+ M D D +F GDL +DV D L+ FS +
Sbjct: 160 VLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDSASDHSIFVGDLASDVNDATLLEAFSSR 219
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 220 YSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQAMTEMN 259
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 44/160 (27%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + +D +F GDL +DV D L+ FS +Y S AKVV D T ++KG+GFV F D
Sbjct: 188 RRSDSASDHSIFVGDLASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGD 247
Query: 74 PQDFIRANKEMNDDF-------------------------------------RLFCGDLG 96
+ +A EMN + +F G L
Sbjct: 248 DSEKTQAMTEMNGVYCSSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTNTTVFVGGLD 307
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+V++E L +TFS+Y K+ K+ GFV F
Sbjct: 308 PNVSEEDLRQTFSQYGEISSVKIPIGKQC------GFVQF 341
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|226492692|ref|NP_001144988.1| uncharacterized protein LOC100278143 [Zea mays]
gi|195649537|gb|ACG44236.1| hypothetical protein [Zea mays]
Length = 436
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 29/161 (18%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------- 71
E + ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 102 QEENKSVWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAE 161
Query: 72 --------------KDPQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFS- 109
P A+ M D D +F GDL +DV D L+ FS
Sbjct: 162 KVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDAASDHSIFVGDLASDVNDATLLEAFSS 221
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+Y S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 222 RYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQAMTEMN 262
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 44/154 (28%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DV D L+ FS +Y S AKVV D T ++KG+GFV F D + +
Sbjct: 197 SDHSIFVGDLASDVNDATLLEAFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTQ 256
Query: 80 ANKEMNDDF-------------------------------------RLFCGDLGNDVTDE 102
A EMN + +F G L +V++E
Sbjct: 257 AMTEMNGVYCSSRPMRIGPATPRKSSGTSGSNGSAARSDGGDLTNTTVFVGGLDPNVSEE 316
Query: 103 LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
L +TFS+Y K+ K+ GFV F
Sbjct: 317 DLRQTFSQYGEISSVKIPIGKQC------GFVQF 344
>gi|168021263|ref|XP_001763161.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685644|gb|EDQ72038.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF L + + L F +Y +A V+ DK T K++GFGF++FK RA KE
Sbjct: 54 KLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKE 113
Query: 84 MNDDF--------------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKA 117
+ + +L+ G L D T + L+ FS+Y +
Sbjct: 114 PSKNIDGRITVCNLASAGSTSGTSSTDQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEG 173
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ DK TNK++GF FV+FK + RA ++ N
Sbjct: 174 AIAYDKNTNKSRGFAFVTFKSIEGAKRAIEDSN 206
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D+ +L+ G L D T + L+ FS+Y + + DK TNK++GF FV+FK +
Sbjct: 140 DQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAK 199
Query: 79 RANKEMN 85
RA ++ N
Sbjct: 200 RAIEDSN 206
>gi|302760919|ref|XP_002963882.1| hypothetical protein SELMODRAFT_80061 [Selaginella moellendorffii]
gi|300169150|gb|EFJ35753.1| hypothetical protein SELMODRAFT_80061 [Selaginella moellendorffii]
Length = 332
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 17 CEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---- 71
+ +D R L+ GDL DE +++ + + KV+R+K T +G+GFV F
Sbjct: 10 AQARDDVRSLWIGDL-QYWMDESYLKSCFPQSTIVSTKVIRNKITGHHEGYGFVEFESHA 68
Query: 72 ---KDPQDFIRA-------------------NKEMNDDFRLFCGDLGNDVTDELLIRTF- 108
K Q F A ++ D +F GDL DVTD +L+ TF
Sbjct: 69 AAEKALQSFTGAVMPRTEQAFRLNWACVGGDKRDSGADDSIFVGDLAADVTDAMLLETFK 128
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S+YPS AKVV D + + +G+GFV F D + A EM+
Sbjct: 129 SRYPSVKSAKVVMDVNSGRCRGYGFVRFGDETEKSSAMTEMH 170
>gi|212275334|ref|NP_001130489.1| uncharacterized protein LOC100191587 [Zea mays]
gi|194689276|gb|ACF78722.1| unknown [Zea mays]
Length = 417
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF-------KDPQDF 77
++ GDL + + L F + KV+R++ + ++G+GFV F K Q+F
Sbjct: 95 IWVGDLQYWMDENYLHSCFGPGGEVVNIKVIRNRHSGVSEGYGFVEFYSHVSAEKALQNF 154
Query: 78 I--------RANK-------------EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
RA K E+ D +F GDL DVTDE+L+ FS KY S
Sbjct: 155 SGHVMPNTERAFKLNWASYSMGEKRSEVPPDHSIFVGDLAVDVTDEMLLELFSNKYRSVK 214
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKV+ D T +++G+GFV F D D A EMN
Sbjct: 215 GAKVIIDANTGRSRGYGFVRFGDDNDKTLAMTEMN 249
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 42/173 (24%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E D +F GDL DVTDE+L+ FS KY S AKV+ D T +++G+GFV F
Sbjct: 177 EKRSEVPPDHSIFVGDLAVDVTDEMLLELFSNKYRSVKGAKVIIDANTGRSRGYGFVRFG 236
Query: 73 DPQDFIRANKEMNDDF-----------------------------------RLFCGDLGN 97
D D A EMN + ++ G L
Sbjct: 237 DDNDKTLAMTEMNGVYCSTRPIRVGLATPRRSQGDSGSSPPRQSDVDSTNRTVYVGGLDP 296
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+++ L + F+KY K+ K+ GFV F + D A + +N
Sbjct: 297 NVSEDELRKAFAKYGDLASVKIPFGKQC------GFVQFVNRVDAEEALQGLN 343
>gi|356519889|ref|XP_003528601.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 422
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL FS K++R +++ +GF+ + D + A +
Sbjct: 59 VYVGNIHTQVTEPLLQEVFSGTGPVEGCKLIRKDKSS----YGFIHYFDRRSAALAILSL 114
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N + +F GDL +VTD L FS YPS A+V+
Sbjct: 115 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 175 WDQKTGRSRGFGFVSFRNQQD---AQSSINDLTGKWLGSRQIRCNWATKG 221
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 63/184 (34%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 128 WAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 187
Query: 69 VSFKDPQDF----------------IRAN----------KEMNDDFR------------- 89
VSF++ QD IR N ++ N D +
Sbjct: 188 VSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDG 247
Query: 90 -----------------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
++ G+L +VT L R F L A V+ + R + KGFG
Sbjct: 248 KETSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHA----LGAGVMEEVRVQRDKGFG 303
Query: 133 FVSF 136
FV +
Sbjct: 304 FVRY 307
>gi|255538402|ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 443
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 75/181 (41%), Gaps = 51/181 (28%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD LL TF S+YPS AKVV D T ++KG+GFV F D
Sbjct: 194 KRSDNAPDLSIFVGDLAADVTDSLLHETFVSRYPSVKAAKVVFDANTGRSKGYGFVRFGD 253
Query: 74 PQDFIRANKEMNDDF--------------------------------------------R 89
+ +A EMN +
Sbjct: 254 DNERTQAMTEMNGVYCSSRAMRIGAATPRKSTGYQHQGGYVSNGASGQAFQADGDSTNTT 313
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G L +VTDE L + FS+Y + K+ KG GFV F + A +++
Sbjct: 314 IFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVG------KGCGFVQFASRSNAEEALQKL 367
Query: 150 N 150
N
Sbjct: 368 N 368
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|115482332|ref|NP_001064759.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|31432465|gb|AAP54095.1| Splicing factor 3B subunit 4, putative, expressed [Oryza sativa
Japonica Group]
gi|113639368|dbj|BAF26673.1| Os10g0457000 [Oryza sativa Japonica Group]
gi|215737182|dbj|BAG96111.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218184664|gb|EEC67091.1| hypothetical protein OsI_33883 [Oryza sativa Indica Group]
Length = 355
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS+ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS+ + +A + MN+
Sbjct: 158 FVSYDSFESSDQAIEAMNNQH 178
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 REFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + L FS KV+R+K N+++G+GF+ F
Sbjct: 74 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKLNNQSEGYGFLEFISRAGAERVLQTY 133
Query: 72 -------------KDPQDFIRANKEMND--DFRLFCGDLGNDVTDELLIRTF-SKYPSFL 115
+ F K +D D+ +F GDL DV+D L F ++Y S
Sbjct: 134 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVK 193
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
AKVV D+ T ++KG+GFV F D + +RA EM
Sbjct: 194 GAKVVIDRNTGRSKGYGFVRFADESEQMRAMTEM 227
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 48/167 (28%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K +D D+ +F GDL DV+D L F ++Y S AKVV D+ T ++KG+GFV F
Sbjct: 156 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRNTGRSKGYGFVRFA 215
Query: 73 DPQDFIRANKEMN-----------------------------------------DDFRLF 91
D + +RA EM ++ +F
Sbjct: 216 DESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIF 275
Query: 92 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
G+L +VTDE L + F++Y + K+ KR GFV F D
Sbjct: 276 VGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRC------GFVQFAD 316
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L TFSKY L KV+ D + K+KGFGFVSF+ +D +A +M
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 257
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 258 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 317
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 318 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 360
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 164
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L TFSKY L
Sbjct: 165 NGMLLNDRKVFVGRFKCRREREAELGAKAKEFTNVYIKNFGEDMDDERLKETFSKYGKTL 224
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +MN
Sbjct: 225 SVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDMN 258
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-------F 77
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D F
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEYGNLLF 72
Query: 78 IRAN----------------KEMNDDFR------LFCGDLGNDVTDELLIRTFSKYPSFL 115
R + E + R +F +L + ++ L TFS + + L
Sbjct: 73 DRMDVCFHVAGGKAFTLLWFSERDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNIL 132
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
KVV D+ N +KG+ FV F+ RA ++MN +FVG K R
Sbjct: 133 SCKVVCDE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCR 182
>gi|50308683|ref|XP_454345.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643480|emb|CAG99432.1| KLLA0E08779p [Kluyveromyces lactis]
Length = 475
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++D L+ G+L + D+LL + F S K++ DK + + + FV + +P D
Sbjct: 93 EKSDKILYVGNLPKSIDDDLLKQYFQIGGSISSVKIIPDKNSQECN-YAFVEYFEPHDAN 151
Query: 79 RANKEMN-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
A + +N + F LF GDL DV D L TF ++PSF+
Sbjct: 152 VAYQTLNGKEVEGKVLKINWAFQSQQVNSDETFNLFVGDLNVDVDDATLAGTFKEFPSFI 211
Query: 116 KAKVVRDKRTNKTKGFGFVSFKD 138
+A V+ D ++ +++G+GFVSF +
Sbjct: 212 QAHVMWDMQSGRSRGYGFVSFGE 234
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS S L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETYEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERAAELGARALEFTNIYVKNLPADVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + +++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDS-SGRSRCFGFVNFEKHEEAQKAVVHMN 252
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + +++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDS-SGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D L
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQDRLSRYQGVNLYVKNLDDSIDDGKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--SHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|222612944|gb|EEE51076.1| hypothetical protein OsJ_31773 [Oryza sativa Japonica Group]
Length = 391
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS+ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVS+ + +A + MN+
Sbjct: 158 FVSYDSFESSDQAIEAMNNQH 178
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D + K+KGFGFVSF+ +D +A ++M
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A ++MN
Sbjct: 219 SVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDMN 252
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|414589689|tpg|DAA40260.1| TPA: hypothetical protein ZEAMMB73_589753 [Zea mays]
Length = 424
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ ++EN ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 84 HQAGQEENK-TIWVGDLHFWMDENYLHNCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYS 142
Query: 74 PQDFIR---------------------ANKEMND-------DFRLFCGDLGNDVTDELLI 105
R A+ M D D +F GDL +DV D L+
Sbjct: 143 HAAAERVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDVASDHSIFVGDLASDVNDATLL 202
Query: 106 RTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS +Y S AKVV D T ++KG+GFV F D + A EMN
Sbjct: 203 EVFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMN 248
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|212722984|ref|NP_001132004.1| uncharacterized protein LOC100193409 [Zea mays]
gi|194693170|gb|ACF80669.1| unknown [Zea mays]
Length = 422
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 72/161 (44%), Gaps = 29/161 (18%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
E + ++ GDL + + L F + KV+R+K+T +++G+GFV F
Sbjct: 88 QEENKTIWVGDLHFWMDENYLHNCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAE 147
Query: 79 R---------------------ANKEMND-------DFRLFCGDLGNDVTDELLIRTFS- 109
R A+ M D D +F GDL +DV D L+ FS
Sbjct: 148 RVLEGFSGHIMPNTDQPFRLNWASFSMGDRRSDVASDHSIFVGDLASDVNDATLLEVFSS 207
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+Y S AKVV D T ++KG+GFV F D + A EMN
Sbjct: 208 RYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMN 248
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD T K+KGFGFVS++ +D +A +EM
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 247
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 248 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 307
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S +A+V+ + ++KGFGFV F P++ +A EMN
Sbjct: 308 KEFSPFGSITRAEVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 350
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 97 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 154
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 155 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 214
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD T K+KGFGFVS++ +D +A +EMN
Sbjct: 215 SVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEMN 248
>gi|357116772|ref|XP_003560152.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 470
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY--PSFLKAKVVRDKRTNKTKGFGFVSFKD--------- 73
L+ GDL + + L F+ K++R+K+T + +G+GF+ F
Sbjct: 116 LWIGDLQYWMDEAYLHNAFAPMGPQQVASVKIIRNKQTGQPEGYGFIEFHSRAAAEYALA 175
Query: 74 ------------PQDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTF-SKYPS 113
P A+ D D +F GDL +DVTD +L F + YPS
Sbjct: 176 SFNGHAMPNVDLPFKLNWASASAGDRRGDDGSDHTIFVGDLASDVTDSMLQEIFKASYPS 235
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A VV D+ T ++KG+GFV F D + RA EMN
Sbjct: 236 VRGANVVTDRATGRSKGYGFVRFGDVNEQTRAMTEMN 272
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D +D +F GDL +DVTD +L F + YPS A VV D+ T ++KG+GFV F D +
Sbjct: 204 DDGSDHTIFVGDLASDVTDSMLQEIFKASYPSVRGANVVTDRATGRSKGYGFVRFGDVNE 263
Query: 77 FIRANKEMN 85
RA EMN
Sbjct: 264 QTRAMTEMN 272
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G ++ DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G ++ DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEMDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G+GFV F+ + RA MN +FVG+ K+R
Sbjct: 133 DE--NGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSR 176
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G+GFV F+ + RA M
Sbjct: 101 IFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAANRAIATM 158
Query: 85 N----DDFRLFCGDL-------------------------GNDVTDELLIRTFSKYPSFL 115
N +D ++F G+ G ++++E L TFS + L
Sbjct: 159 NGMLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNERLQETFSIFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D ++KGFGFV+F+ QD +A ++MN
Sbjct: 219 SVKVMTDN-IGRSKGFGFVNFEKHQDAQKAVEDMN 252
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G ++++E L TFS + L KV+ D ++KGFGFV+F+ QD +A ++M
Sbjct: 193 VYIKNFGEEMSNERLQETFSIFGKTLSVKVMTDN-IGRSKGFGFVNFEKHQDAQKAVEDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|308480880|ref|XP_003102646.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
gi|308261080|gb|EFP05033.1| hypothetical protein CRE_03259 [Caenorhabditis remanei]
Length = 358
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 43/166 (25%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD----- 76
F +F GDL DV++ELL TF KY +AKV+RD +T K+KG+GFVSF + Q+
Sbjct: 132 HFHVFVGDLSKDVSNELLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAI 191
Query: 77 -----------------FIRANKEMN---------------DDFRLFCGDLGNDVTDELL 104
R N E N D+ ++ G++ T+ L
Sbjct: 192 AGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTETDL 251
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+FS Y + +V + +R + FV + + +A EMN
Sbjct: 252 RESFSTYGDIAEVRVFKTQR------YAFVRYDKKECATKAIMEMN 291
>gi|213401961|ref|XP_002171753.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
gi|211999800|gb|EEB05460.1| RNA-binding post-transcriptional regulator csx1
[Schizosaccharomyces japonicus yFS275]
Length = 476
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 29/160 (18%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
N+ L+ G+L +T+ ++ + ++ + K++RD+ + G+ FV F P +
Sbjct: 94 SHNNSTLWMGELAPFITEAMVQQIWNSLGENVNVKIIRDRYSGLNAGYCFVEFNSPASAM 153
Query: 79 RA---------------------NKEMND-------DFRLFCGDLGNDVTDELLIRTF-S 109
+A ++D +F +F GDLG +VT+ +L+ F S
Sbjct: 154 KAMSLNGTVIPGTNRFFKLNWASGGGLHDRREGKTPEFSIFVGDLGPEVTEPMLLSLFQS 213
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+Y S AK++ D TN ++G+GFV F D D RA EM
Sbjct: 214 RYRSCKSAKIMMDSNTNLSRGYGFVRFYDENDQKRALTEM 253
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+F +F GDLG +VT+ +L+ F S+Y S AK++ D TN ++G+GFV F D D RA
Sbjct: 190 EFSIFVGDLGPEVTEPMLLSLFQSRYRSCKSAKIMMDSNTNLSRGYGFVRFYDENDQKRA 249
Query: 81 NKEMNDDFRLFCGD 94
EM ++CG+
Sbjct: 250 LTEMQG---VYCGN 260
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKDLFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 149
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 150 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 193
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 328
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 329 REFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 371
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 175
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 236 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 269
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 77/186 (41%), Gaps = 56/186 (30%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K +++ D +F GDL DVTD LL TFS K+PS AKVV D T ++KG+GFV F D
Sbjct: 169 KRSDNDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANTGRSKGYGFVRFGD 228
Query: 74 PQDFIRANKEMNDDF--------------------------------------------- 88
+ +A EMN +
Sbjct: 229 DNERSQAMTEMNGIYCSSRPMRIGAATPRKSSGYQQQHSSQGGGYSTNGYFSQGLQSEGD 288
Query: 89 ----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+F G L +VTDE L + FS+Y + K+ KG GFV F + D
Sbjct: 289 SANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNDAEE 342
Query: 145 ANKEMN 150
A +++N
Sbjct: 343 ALQKLN 348
>gi|405975383|gb|EKC39949.1| tRNA selenocysteine 1-associated protein 1 [Crassostrea gigas]
Length = 337
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 23/152 (15%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ LF GDL +V D L + FS+ + S AKVV + + K+KG+GFV F + D RA
Sbjct: 65 EYSLFVGDLTEEVDDYTLYQAFSRRFKSCRSAKVVLEP-SGKSKGYGFVRFTEETDQQRA 123
Query: 81 NKEMND-------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVV 120
EM ++ LF GDL +V D L + FS ++ S AKVV
Sbjct: 124 LIEMQHMQGVGKKPIRVSLATPKSPEYSLFVGDLTEEVDDYTLYQAFSRRFKSCRSAKVV 183
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
+ + K+KG+GFV F + D RA EM
Sbjct: 184 LEP-SGKSKGYGFVRFTEETDQQRALIEMQHM 214
>gi|402081154|gb|EJT76299.1| hypothetical protein GGTG_06219 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 618
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 113 KEDGKMFIGGLNWETTDQSLREYFSQFGEVIECTVMRDGSTGRSRGFGFLTFKDPKTVNI 172
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + D TD+ F+++ + A ++
Sbjct: 173 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFKDFFAQFGRVVDATLM 232
Query: 121 RDKRTNKTKGFGFVSFK 137
DK T + +GFGFV+F+
Sbjct: 233 MDKDTGRPRGFGFVTFE 249
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 114 EDGKMFIGGLNWETTDQSLREYFSQFGEVIECTVMRDGSTGRSRGFGFLTFKDPK 168
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + D TD+ F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 195 EQEKTSKIFVGGVSQDTTDQEFKDFFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 249
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 REFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|241951870|ref|XP_002418657.1| RNA binding protein, putative [Candida dubliniensis CD36]
gi|223641996|emb|CAX43960.1| RNA binding protein, putative [Candida dubliniensis CD36]
Length = 451
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 33/165 (20%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDF-- 77
N+F+++ GDL T+E + ++K S K++RD+ + FV+F+D +
Sbjct: 80 NEFQMWMGDLDPHWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDKESIDL 139
Query: 78 -IRANKE---------------------------MNDDFRLFCGDLGNDVTDELLIRTFS 109
I+ N + +++++ +F GDL +V+D L FS
Sbjct: 140 AIQRNGQKVPDSNRVFKLNYSGRNSTGSNDRSTNLSNEYSIFIGDLAPEVSDATLFNKFS 199
Query: 110 -KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
KYP+ +K AKV+ D T K+KGFGFV F P+ RA KEM +
Sbjct: 200 MKYPNQIKQAKVIVDSSTRKSKGFGFVKFHSPETMNRALKEMQGY 244
>gi|218202287|gb|EEC84714.1| hypothetical protein OsI_31675 [Oryza sativa Indica Group]
Length = 377
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 29/141 (20%)
Query: 39 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---------------------KDPQDF 77
+R F + KV+R+K+T +++G+GFV F P
Sbjct: 67 FVRMFGLMCQVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRI 126
Query: 78 IRANKEMND-------DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTK 129
A+ M D D +F GDL +DV D L+ TFSK Y S AKVV D T ++K
Sbjct: 127 NWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSK 186
Query: 130 GFGFVSFKDPQDFIRANKEMN 150
G+GFV F D + A EMN
Sbjct: 187 GYGFVRFGDDNEKTHAMTEMN 207
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 46/165 (27%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DV D L+ TFSK Y S AKVV D T ++KG+GFV F D +
Sbjct: 142 SDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTH 201
Query: 80 ANKEMNDDF------------------------------------RLFCGDLGNDVTDEL 103
A EMN + +F G L +V+++
Sbjct: 202 AMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDD 261
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA 145
L +TFS+Y K+ K+ GFV F K+ +D ++
Sbjct: 262 LRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQG 300
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|297738530|emb|CBI27775.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL FS K++R ++++ +GFV + D +
Sbjct: 56 VYVGNIHPQVTEPLLQEVFSSTGPLEGCKLIRKEKSS----YGFVDYFDRRSAALSIVTL 111
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D + +F GDL +VTD L FS YPS A+V+
Sbjct: 112 NGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 172 WDQKTGRSRGFGFVSFRNQQE---AQSAINDLNGRWLGSRQIRCNWATKG 218
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 125 WAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 184
Query: 69 VSFKDPQDFIRANKEMN 85
VSF++ Q+ A ++N
Sbjct: 185 VSFRNQQEAQSAINDLN 201
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|357158812|ref|XP_003578248.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 431
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 9 ISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ S + ++EN ++ GDL + + L F + KV+R+K+T +++G+GF
Sbjct: 91 LGSPAAQGGQEENK-TIWVGDLHYWMDENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGF 149
Query: 69 VSF---------------------KDPQDFIRANKEMND-------DFRLFCGDLGNDVT 100
V F P A+ M D D +F GDL +DV
Sbjct: 150 VEFYSHAAAEKVLDGFAGHIMPNTDQPFRINWASFSMGDRRSDIASDHSIFVGDLASDVN 209
Query: 101 DELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D L+ FS +Y S AKVV D T ++KG+GFV F D + A EMN
Sbjct: 210 DATLLEIFSSRYSSVKGAKVVIDANTGRSKGYGFVRFGDDSEKTHAMTEMN 260
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 173
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 174 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 233
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 234 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 267
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 266
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 267 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 326
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 327 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 369
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|357479383|ref|XP_003609977.1| RNA-binding protein [Medicago truncatula]
gi|355511032|gb|AES92174.1| RNA-binding protein [Medicago truncatula]
Length = 245
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV--------------- 69
++ G++ V++ LL FS + K++R ++++ +GFV
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 70 --------SFKDPQDFIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
S K + R +E + F +F GDL +VTD L FS Y S A+V+
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVM 163
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 164 WDQKTGRSRGFGFVSFRNQQE---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
F +F GDL +VTD L FS Y S A+V+ D++T +++GFGFVSF++ Q+ A
Sbjct: 130 HFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQE---AQ 186
Query: 82 KEMND 86
+ND
Sbjct: 187 SAIND 191
>gi|449446638|ref|XP_004141078.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 420
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL FS K++R ++++ +GFV + D +
Sbjct: 48 VYVGNIHPQVTEPLLQEVFSSIGPIEGCKLIRKEKSS----YGFVDYFDRRSAAVSIISL 103
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L FS YPS A+V+
Sbjct: 104 NGRNLFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 163
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++G+GFV+F++ QD A +N+ ++G + R + KG
Sbjct: 164 WDQKTGRSRGYGFVAFRNEQD---AQSAINDINGKWLGSRQIRCNWATKG 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS YPS A+V+ D++T +++G+GF
Sbjct: 117 WAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGYGF 176
Query: 69 VSFKDPQDFIRANKEMNDDF 88
V+F++ QD A ++N +
Sbjct: 177 VAFRNEQDAQSAINDINGKW 196
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 178
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 238
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 239 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 272
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 331
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 332 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 374
>gi|426396432|ref|XP_004064447.1| PREDICTED: uncharacterized protein LOC101125114 [Gorilla gorilla
gorilla]
Length = 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 32/176 (18%)
Query: 17 CEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
CE DF+ L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++
Sbjct: 326 CEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 385
Query: 74 PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTFSK 110
P D RA + +N D +F +LG + ++ L FS
Sbjct: 386 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 445
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKT 162
+ + L KV D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 446 FGNILSCKVACDEK--GPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKS 499
>gi|12836631|dbj|BAB23742.1| unnamed protein product [Mus musculus]
Length = 168
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D+ N +KG+GFV F+ + RA ++MN
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMN 159
>gi|363748813|ref|XP_003644624.1| hypothetical protein Ecym_2050 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888257|gb|AET37807.1| Hypothetical protein Ecym_2050 [Eremothecium cymbalariae
DBVPG#7215]
Length = 541
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + T++ L FSKY + + K++RD T +++GFGF+SF D
Sbjct: 172 KMFIGGLNWETTEDNLREYFSKYGTVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKT 231
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA +E + ++F G +G DV + FS++ S + A+++ DK
Sbjct: 232 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSEWGSIIDAQLMLDKD 291
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 292 TGRSRGFGFITYDSP 306
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E + ++F G +G DV + FS++ S + A+++ DK T +++GFGF+++ P
Sbjct: 250 EQDKTGKIFVGGIGPDVRPKEFEEFFSEWGSIIDAQLMLDKDTGRSRGFGFITYDSP 306
>gi|321262697|ref|XP_003196067.1| non-translatable mRNA -binding protein [Cryptococcus gattii WM276]
gi|317462542|gb|ADV24280.1| Non-translatable mRNA -binding protein, putative [Cryptococcus
gattii WM276]
Length = 434
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 35/175 (20%)
Query: 3 GLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
G+ PG ++ E L+ G+L VTD +L F+ + AK+++D R +
Sbjct: 9 GITPG-------QSAEAPKRPHLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQD-RNFQ 60
Query: 63 TKGF--GFVSFKDPQDFIRA------------------------NKE-MNDDFRLFCGDL 95
GF GFV + D + +A NKE + +F GDL
Sbjct: 61 HGGFNYGFVEYADMRSAEQALTTLNGRKIFDAEIRVNWAYQGNQNKEDTQHHYHVFVGDL 120
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V D++L + F + S +A+V+ D + K++G+GF+SF+D D +A MN
Sbjct: 121 SPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMN 175
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ + +F GDL +V D++L + F + S +A+V+ D + K++G+GF+SF+D D +
Sbjct: 110 QHHYHVFVGDLSPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQ 169
Query: 80 ANKEMNDDF 88
A MN ++
Sbjct: 170 AIASMNGEW 178
>gi|260942727|ref|XP_002615662.1| hypothetical protein CLUG_04544 [Clavispora lusitaniae ATCC 42720]
gi|238850952|gb|EEQ40416.1| hypothetical protein CLUG_04544 [Clavispora lusitaniae ATCC 42720]
Length = 527
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 19/136 (13%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFIR- 79
++F G L D T+E L+ FSKY L +++D T +++GFGF++FKDP+ + I+
Sbjct: 164 KMFIGGLNWDTTEEGLVSYFSKYGEILDYTIMKDASTGRSRGFGFLTFKDPRAVDEVIKK 223
Query: 80 ---------------ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
A +E + ++F G + V + FS++ + A+++ DK
Sbjct: 224 DHILDGKLIDPKRAIAREEQDKVGKIFVGGIDPLVNERDFNDFFSQFGHIIDAQLMIDKD 283
Query: 125 TNKTKGFGFVSFKDPQ 140
T +++GFGF+++ P+
Sbjct: 284 TGRSRGFGFITYDSPE 299
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D ++F G L D T+E L+ FSKY L +++D T +++GFGF++FKDP RA
Sbjct: 161 DSGKMFIGGLNWDTTEEGLVSYFSKYGEILDYTIMKDASTGRSRGFGFLTFKDP----RA 216
Query: 146 NKEMNEFPHLFVGDL 160
E+ + H+ G L
Sbjct: 217 VDEVIKKDHILDGKL 231
>gi|357460829|ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
gi|355489744|gb|AES70947.1| Splicing factor 3B subunit [Medicago truncatula]
Length = 379
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L +++ELL F + + V +D+ TN+ +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFISY 161
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+ + E N D + G+L +++ELL F + + V +D+ TN+ +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 139 PQDFIRANKEMN 150
+D A K +N
Sbjct: 76 EEDADYAIKVLN 87
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
F+S+ + A + MN +
Sbjct: 158 FISYDSFEASDSAIEAMNGQY 178
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L F ++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L F ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFIQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T + + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L KVV
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNVLSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP----HLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN P +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNVLSCKVVCDE--NGSKGYGFVHFETREAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGIPLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQ-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 154
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 155 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 198
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D+ L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 273
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 274 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 333
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 334 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 376
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 123 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 180
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D+ L FS++ L
Sbjct: 181 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 240
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 241 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 274
>gi|225444661|ref|XP_002276983.1| PREDICTED: nucleolysin TIAR isoform 1 [Vitis vinifera]
Length = 429
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL FS K++R ++++ +GFV + D +
Sbjct: 56 VYVGNIHPQVTEPLLQEVFSSTGPLEGCKLIRKEKSS----YGFVDYFDRRSAALSIVTL 111
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D + +F GDL +VTD L FS YPS A+V+
Sbjct: 112 NGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 171
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 172 WDQKTGRSRGFGFVSFRNQQE---AQSAINDLNGRWLGSRQIRCNWATKG 218
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L FS YPS A+V+ D++T +++GFGF
Sbjct: 125 WAYASSQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGF 184
Query: 69 VSFKDPQDFIRANKEMN 85
VSF++ Q+ A ++N
Sbjct: 185 VSFRNQQEAQSAINDLN 201
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D+ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEVGARAIEFTNVYIKNFGDDMDDDRLREIFSRFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D ++KGFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADMN 252
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D+ L FS++ L KV+ D ++KGFGFV+F+ ++ +A +M
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDN-NGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSR 176
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 36/167 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG GFV F+ + RA ++M
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+ + D+ L F ++ L
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVG 158
KV+ D+ K+KGFGFVSF+ +D +A EMN H++VG
Sbjct: 219 SVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVG 264
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+ + D+ L F ++ L KV+ D+ K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQ 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + KV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMN 354
>gi|405119959|gb|AFR94730.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cryptococcus neoformans var. grubii H99]
Length = 434
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 35/175 (20%)
Query: 3 GLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
G+ PG ++ E L+ G+L VTD +L F+ + AK+++D R +
Sbjct: 9 GITPG-------QSAEAPKRPHLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQD-RNFQ 60
Query: 63 TKGF--GFVSFKDPQDFIRA------------------------NKE-MNDDFRLFCGDL 95
GF GFV + D + +A NKE + +F GDL
Sbjct: 61 HGGFNYGFVEYADMRSADQALTTLNGRKIFDAEIRVNWAYQGNQNKEDTQHHYHVFVGDL 120
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V D++L + F + S +A+V+ D + K++G+GF+SF+D D +A MN
Sbjct: 121 SPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMN 175
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ + +F GDL +V D++L + F + S +A+V+ D + K++G+GF+SF+D D +
Sbjct: 110 QHHYHVFVGDLSPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQ 169
Query: 80 ANKEMNDDF 88
A MN ++
Sbjct: 170 AIASMNGEW 178
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDS-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P + +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDS-SGKSKGFGFVSFEKHEDANKAVEEMN 252
>gi|218200015|gb|EEC82442.1| hypothetical protein OsI_26865 [Oryza sativa Indica Group]
Length = 427
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL F K++R ++++ +GFV + D +
Sbjct: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALAILTL 122
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
IR N ++ D F +F GDL +VTD L FS Y S A+V+
Sbjct: 123 NGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVM 182
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++G+GFVSF++ QD A +N+ ++G + R + KG
Sbjct: 183 WDQKTGRSRGYGFVSFRNQQD---AQSAINDLNGQWLGSRQIRCNWATKG 229
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 60/177 (33%)
Query: 18 EDEND-FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED D F +F GDL +VTD L FS Y S A+V+ D++T +++G+GFVSF++ QD
Sbjct: 144 EDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQD 203
Query: 77 F----------------IRAN--------------------------------------K 82
IR N
Sbjct: 204 AQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDVP 263
Query: 83 EMNDDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
E N +R ++ G+L ++VT ++L R F L A + + R KGFGFV +
Sbjct: 264 ENNPQYRTVYVGNLAHEVTQDVLHRLFHA----LGAGAIEEVRIQLGKGFGFVRYSS 316
>gi|356532261|ref|XP_003534692.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 365
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ E D + G+L +++ELL F + + V +D+ TN+ +G+GFV F+
Sbjct: 16 QHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFISY 161
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
E N D + G+L +++ELL F + + V +D+ TN+ +G+GFV F+ +D
Sbjct: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
Query: 143 IRANKEMN 150
A K +N
Sbjct: 80 DYAIKVLN 87
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
F+S+ + A + MN +
Sbjct: 158 FISYDSFEASDSAIEAMNGQY 178
>gi|115473341|ref|NP_001060269.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|23237933|dbj|BAC16506.1| putative oligouridylate binding protein [Oryza sativa Japonica
Group]
gi|113611805|dbj|BAF22183.1| Os07g0615400 [Oryza sativa Japonica Group]
gi|215737207|dbj|BAG96136.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767365|dbj|BAG99593.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637457|gb|EEE67589.1| hypothetical protein OsJ_25126 [Oryza sativa Japonica Group]
Length = 427
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VT+ LL F K++R ++++ +GFV + D +
Sbjct: 67 VYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKSS----YGFVDYYDRRSAALSILTL 122
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
IR N ++ D F +F GDL +VTD L FS Y S A+V+
Sbjct: 123 NGKQIFGQLIRVNWAYASGQREDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVM 182
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++G+GFVSF++ QD A +N+ ++G + R + KG
Sbjct: 183 WDQKTGRSRGYGFVSFRNQQD---AQSAINDLNGQWLGSRQIRCNWATKG 229
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 60/177 (33%)
Query: 18 EDEND-FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED D F +F GDL +VTD L FS Y S A+V+ D++T +++G+GFVSF++ QD
Sbjct: 144 EDTTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQD 203
Query: 77 F----------------IRAN--------------------------------------K 82
IR N
Sbjct: 204 AQSAINDLNGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAP 263
Query: 83 EMNDDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
E N +R ++ G+L ++VT ++L R F L A + + R KGFGFV + +
Sbjct: 264 ENNPQYRTVYVGNLAHEVTQDVLHRLFHA----LGAGAIEEVRIQLGKGFGFVRYSN 316
>gi|58266842|ref|XP_570577.1| mRNA catabolism, nonsense-mediated-related protein [Cryptococcus
neoformans var. neoformans JEC21]
gi|134110468|ref|XP_776061.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258729|gb|EAL21414.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226810|gb|AAW43270.1| mRNA catabolism, nonsense-mediated-related protein, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 434
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 35/175 (20%)
Query: 3 GLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
G+ PG ++ E L+ G+L VTD +L F+ + AK+++D R +
Sbjct: 9 GITPG-------QSAEAPKRPHLYVGNLSPRVTDYILTEIFAVAGPVVSAKIIQD-RNFQ 60
Query: 63 TKGF--GFVSFKDPQDF----------------IRAN---------KEMNDDFRLFCGDL 95
GF GFV + D + IR N ++ + +F GDL
Sbjct: 61 HGGFNYGFVEYADMRSADQALTTLNGRKIFDAEIRVNWAYQGNQNKEDTQHHYHVFVGDL 120
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V D++L + F + S +A+V+ D + K++G+GF+SF+D D +A MN
Sbjct: 121 SPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASMN 175
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ + +F GDL +V D++L + F + S +A+V+ D + K++G+GF+SF+D D +
Sbjct: 110 QHHYHVFVGDLSPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQ 169
Query: 80 ANKEMNDDF 88
A MN ++
Sbjct: 170 AIASMNGEW 178
>gi|397508069|ref|XP_003824497.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Pan paniscus]
Length = 293
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 32/177 (18%)
Query: 17 CEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
CE DF+ L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++
Sbjct: 86 CEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 145
Query: 74 PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTFSK 110
P D RA + +N D +F +LG + ++ L FS
Sbjct: 146 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 205
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
+ + L KV D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 206 FGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 260
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FSKY L KV+ D + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P + +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMN 252
>gi|357156104|ref|XP_003577343.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 451
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 23/166 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VTD LL F K++R ++++ ++ VS Q
Sbjct: 79 VYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAALAIVSLNGRQ 138
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
F I+ N ++ + F +F GDL +VTD L FS Y + A+V+ D++
Sbjct: 139 LFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFSAYSTCSDARVMWDQK 198
Query: 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
T +++GFGFVSF++ QD A +NE ++G+ + R + KG
Sbjct: 199 TGRSRGFGFVSFRNQQD---AQTAINELNGKWLGNRQIRCNWATKG 241
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS Y + A+V+ D++T +++GFGF
Sbjct: 148 WAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFSAYSTCSDARVMWDQKTGRSRGFGF 207
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ QD A E+N +
Sbjct: 208 VSFRNQQDAQTAINELNGKW 227
>gi|297735183|emb|CBI17545.3| unnamed protein product [Vitis vinifera]
Length = 238
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L VT+ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGFVS+
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFVSY 161
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+ + E N D + G+L VT+ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 139 PQDFIRANKEMN 150
+D A K +N
Sbjct: 76 EEDADYAIKVLN 87
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1 MLGLRPGPISSWIKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVV 55
M+ L PI + K +D+ LF G+L DV ++LL TFS + + K++
Sbjct: 88 MIKLYGKPIR--VNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIM 145
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
RD T ++GFGFVS+ + A + MN +
Sbjct: 146 RDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQY 178
>gi|356544204|ref|XP_003540544.1| PREDICTED: splicing factor 3B subunit 4-like [Glycine max]
Length = 364
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ E D + G+L + +ELL F + + V +D+ TN+ +G+GFV F+
Sbjct: 16 QHAAERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFISY 161
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
E N D + G+L + +ELL F + + V +D+ TN+ +G+GFV F+ +D
Sbjct: 20 ERNQDATAYVGNLDPQICEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
Query: 143 IRANKEMN 150
A K +N
Sbjct: 80 DYAIKVLN 87
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSF 71
F+S+
Sbjct: 158 FISY 161
>gi|259483749|tpe|CBF79395.1| TPA: heterogeneous nuclear ribonucleoprotein HRP1 (AFU_orthologue;
AFUA_2G06090) [Aspergillus nidulans FGSC A4]
Length = 559
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 25/150 (16%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P P + IK+ D ++F G L + TD+ L FS++ + V+RD T +++G
Sbjct: 99 PEPQGTGIKE------DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRG 152
Query: 66 FGFVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIR 106
FGF++FKDP+ D RA E ++F G + + T++ +
Sbjct: 153 FGFLTFKDPKTVNTVMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQ 212
Query: 107 TFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
F ++ + A ++ DK T + +GFGFV+F
Sbjct: 213 FFMQFGRVIDATLMIDKDTGRPRGFGFVTF 242
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 106 IKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FSKY L KV+ D + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P + +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMN 252
>gi|403213324|emb|CCK67826.1| hypothetical protein KNAG_0A01370 [Kazachstania naganishii CBS
8797]
Length = 545
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 24/159 (15%)
Query: 6 PGPISSWIK-----KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
PGP S + K +++ ++F G L + T++ L F+KY + K+++D +
Sbjct: 135 PGPAESNLDANGHVKADISKDNCKMFIGGLNWETTEDGLREYFNKYGHVIDLKIMKDPNS 194
Query: 61 NKTKGFGFVSFKDPQDFIRANK-------------------EMNDDFRLFCGDLGNDVTD 101
+++GFGF++F++P K E + ++F G +G DV
Sbjct: 195 GRSRGFGFLTFEEPSSVDEVVKTQHILDGKVIDPKRSIPREEQDKTGKIFVGGIGADVRP 254
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ FS+Y + + A+++ DK T +++GFGFV++ P+
Sbjct: 255 KEFEEFFSQYGTIIDAQLMLDKDTGRSRGFGFVTYDSPE 293
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + ++F G +G DV + FS+Y + + A+++ DK T +++GFGFV++ P+
Sbjct: 236 EQDKTGKIFVGGIGADVRPKEFEEFFSQYGTIIDAQLMLDKDTGRSRGFGFVTYDSPEAV 295
Query: 78 IRANKEMNDDFR 89
R + DF+
Sbjct: 296 DRVCQNKYIDFK 307
>gi|363750866|ref|XP_003645650.1| hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889284|gb|AET38833.1| Hypothetical protein Ecym_3344 [Eremothecium cymbalariae
DBVPG#7215]
Length = 421
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
K + +D L+ G+L + ++ L + F KV+ DK N+ + FV + P
Sbjct: 55 KGGRETSDRILYVGNLDKAINEDTLKQYFQVGGPIANVKVLVDK-NNEEANYAFVEYHQP 113
Query: 75 QD-----------------------FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKY 111
D F + +D F LF GDL DV DE L TF ++
Sbjct: 114 HDANVAFQTLDGKQIEGNVIKINWAFQSQHVSSDDTFNLFVGDLNVDVDDETLTGTFKEF 173
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
PSF++A V+ D + +++G+GFVSF + QD + E
Sbjct: 174 PSFIQAHVMWDMLSGRSRGYGFVSFSE-QDVAQQAME 209
>gi|365983576|ref|XP_003668621.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
gi|343767388|emb|CCD23378.1| hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Length = 499
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+D L+ G+L + ++LL + F K++ DK+ N+ + FV + D A
Sbjct: 85 SDRVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKK-NQNVNYAFVEYLKSHDANVA 143
Query: 81 ------------------------NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 116
N ND F LF GDL DV DE L F +PS+++
Sbjct: 144 LQTLNGIQIENKIIKINWAFQSQQNLNSNDTFNLFVGDLNIDVDDETLSSNFKNFPSYIQ 203
Query: 117 AKVVRDKRTNKTKGFGFVSFKD 138
A V+ D +T++++G+GFVSF D
Sbjct: 204 AHVMWDMQTSRSRGYGFVSFAD 225
>gi|385305500|gb|EIF49466.1| pub1p [Dekkera bruxellensis AWRI1499]
Length = 489
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 29/152 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGF--GFVSFKDPQDFIRAN 81
L+ G++ N V++++L F + +++ K++ DK NK +GF F+ ++D A
Sbjct: 159 LYVGNIDNSVSEDMLRDLFGSLGAQIQSIKILYDK--NK-RGFNYAFIEYEDHXKAENAL 215
Query: 82 KEMN-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAK 118
+ +N ++F LF GDL ++ D+ L TFSK+PSF++A
Sbjct: 216 QALNGTVLANYPLKITWAYRTQQSRSGENFTLFVGDLSPEIDDDSLAATFSKFPSFVQAN 275
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V+ D +T +++G+GFVSF++ QD + MN
Sbjct: 276 VMWDMKTGRSRGYGFVSFQNNQDAETVLQTMN 307
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 11 SWIKKTCEDEN--DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W +T + + +F LF GDL ++ D+ L TFSK+PSF++A V+ D +T +++G+GF
Sbjct: 231 TWAYRTQQSRSGENFTLFVGDLSPEIDDDSLAATFSKFPSFVQANVMWDMKTGRSRGYGF 290
Query: 69 VSFKDPQDFIRANKEMN 85
VSF++ QD + MN
Sbjct: 291 VSFQNNQDAETVLQTMN 307
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 14 LYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 73
Query: 85 NDD-----------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KV
Sbjct: 74 NYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSC 133
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTRS 164
++ N +KG+GFV F+ + IRA +++N +FVG TRS
Sbjct: 134 NE--NGSKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRS 178
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KV ++ N +KG+GFV F+ + IRA +++
Sbjct: 102 IFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNE--NGSKGYGFVHFETEEAGIRAIEKV 159
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+ ++ L F KY
Sbjct: 160 NGMLLNDKKVFVGKFLTRSERIKKMGERVRQFTNVYIKNFGDKYDEKTLQVMFEKYGVVK 219
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V+RD+ N ++GFGFV++ ++ A + MN
Sbjct: 220 SVAVMRDRDGN-SRGFGFVAYDSHEEAQAAVEAMN 253
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FSKY L KV+ D + K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P + +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPDEATKAVTEMN 354
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D L FSKY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDGRLKELFSKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF+ +D +A +EMN
Sbjct: 219 SVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEMN 252
>gi|452820612|gb|EME27652.1| splicing factor 3B subunit 4 [Galdieria sulphuraria]
Length = 265
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+ E + L+ G+L V++ELL + + RD+ T +T+G+GFV FK+
Sbjct: 15 QPAERNQEATLYVGNLDERVSEELLWELMVQVGPVKHVYIPRDRITGQTQGYGFVEFKNE 74
Query: 75 QDFIRANKEMN---------------DDFR-------LFCGDLGNDVTDELLIRTFSKYP 112
D I A K +N D R LF G+L +V ++LL TFS +
Sbjct: 75 MDAIYATKVLNMVRVYAKPLRLQQASTDKRSMDIGANLFVGNLSQEVDEKLLYDTFSAFG 134
Query: 113 SFLKA-KVVRDKRTNKTKGFGFVSF 136
+ ++ ++RD T ++KG+GF+ F
Sbjct: 135 AIIETPHIMRDPETGESKGYGFIKF 159
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 76 DFIRANK--EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
+F +A++ E N + L+ G+L V++ELL + + RD+ T +T+G+GF
Sbjct: 9 NFYQASQPAERNQEATLYVGNLDERVSEELLWELMVQVGPVKHVYIPRDRITGQTQGYGF 68
Query: 134 VSFKDPQDFIRANKEMN 150
V FK+ D I A K +N
Sbjct: 69 VEFKNEMDAIYATKVLN 85
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
LF G+L +V ++LL TFS + + ++ ++RD T ++KG+GF+ F + A +
Sbjct: 112 LFVGNLSQEVDEKLLYDTFSAFGAIIETPHIMRDPETGESKGYGFIKFDSFEASDAAIET 171
Query: 84 MNDDFRLFCGDLGND 98
MN F LGN+
Sbjct: 172 MNGQF------LGNN 180
>gi|255550690|ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
gi|223544492|gb|EEF46011.1| spliceosome associated protein, putative [Ricinus communis]
Length = 376
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKIMNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFISY 161
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ E N D + G+L V++ELL F + + V +D+ TN +G+GFV F+ +
Sbjct: 18 SAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
Query: 141 DFIRANKEMN 150
D A K MN
Sbjct: 78 DADYAIKIMN 87
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFG 157
Query: 68 FVSF 71
F+S+
Sbjct: 158 FISY 161
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 264
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 265 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 324
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 325 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 367
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 114 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 171
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 172 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 231
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 232 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 265
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 42/179 (23%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI------ 78
L+ GDL +DVT+ +L FS L V RD T ++ G+ +V+F+ P D +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 79 -------RANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTF 108
RA MN D +F +L + ++ L TF
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 132
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
S + + L KVV D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 SAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 189
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 26/149 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L + +E L + F KV+ DK N + + FV + D A K +
Sbjct: 81 LYVGNLDKSINEETLKQYFQIGGPISNVKVINDK--NNSVNYAFVEYLQHHDADVAFKNL 138
Query: 85 NDD------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F LF GDL DV DE L FS++PSF++A V+
Sbjct: 139 NGKTIETKVLKINWAFQSQQTTSDESLFNLFVGDLNVDVDDETLGHAFSEFPSFVQAHVM 198
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GF+SF + +D A +M
Sbjct: 199 WDMQTGRSRGYGFISFSNQEDAQTAMDKM 227
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++T DE+ F LF GDL DV DE L FS++PSF++A V+ D +T +++G+GF+SF +
Sbjct: 157 QQTTSDESLFNLFVGDLNVDVDDETLGHAFSEFPSFVQAHVMWDMQTGRSRGYGFISFSN 216
Query: 74 PQDFIRANKEM 84
+D A +M
Sbjct: 217 QEDAQTAMDKM 227
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T + + +V+F+ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + +++L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTASAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + +++L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKVLYDTASAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 32/150 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGYGFVHFETHEAATRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D+ L FSK+ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGDDMDDDRLREIFSKFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
KV+ D T ++KGFGFV+F+ ++ +A
Sbjct: 219 SVKVMMDS-TGRSKGFGFVNFEKHEEAQKA 247
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 58/181 (32%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN--- 81
++ + G+D+ D+ L FSK+ L KV+ D T ++KGFGFV+F+ ++ +A
Sbjct: 193 VYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDS-TGRSKGFGFVNFEKHEEAQKARGSS 251
Query: 82 ------------------KEMN----------------------------------DDFR 89
KE+N
Sbjct: 252 CCAQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVN 311
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + D+ L + FS Y + AKV+ + +KGFGFV F P++ +A EM
Sbjct: 312 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 369
Query: 150 N 150
N
Sbjct: 370 N 370
>gi|116788528|gb|ABK24911.1| unknown [Picea sitchensis]
Length = 397
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 32/157 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFGFVSF------------ 71
L+ GDL + + L FS + K++R+K+T + +G+GFV
Sbjct: 53 LWVGDLQYWMDENYLQTCFSSNGEVVVSVKIIRNKQTGQPEGYGFVELDSRASAERILQT 112
Query: 72 -------KDPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
P F R N E + +F GDLG +V D LL TF S+Y S
Sbjct: 113 LHGTPMPNSPHPF-RLNWATFGAGDRRTEPGTGYSIFVGDLGPEVIDILLQETFQSRYSS 171
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T +TKG+GFV F D + RA EMN
Sbjct: 172 VKSAKVVIDANTGRTKGYGFVRFGDENEKNRAMTEMN 208
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
E + +F GDLG +V D LL TF S+Y S AKVV D T +TKG+GFV F D +
Sbjct: 140 EPGTGYSIFVGDLGPEVIDILLQETFQSRYSSVKSAKVVIDANTGRTKGYGFVRFGDENE 199
Query: 77 FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSF-LKAKVVRDKRTNKTKGFGFVS 135
RA EMN ++C + + ++ S+ +K G GF S
Sbjct: 200 KNRAMTEMNG---VYCCSRPMRINEATPKKSLGLQQSYSMKGNYYTQAYGGAVAGQGFQS 256
Query: 136 FKDPQD 141
DP +
Sbjct: 257 DNDPNN 262
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--NGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + D+ DE L FS++ L KV+ D+ +++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVDE-NGQSRGFGFVNFEKHEEAQKAVSNM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 203
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 204 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 263
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KVV D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 264 SVKVVTDE-SGKSKGFGFVSFERHEDARKAVDEMN 297
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KVV D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTDE-SGKSKGFGFVSFERHEDARKAVDEM 296
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 297 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 356
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 357 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 399
>gi|357479381|ref|XP_003609976.1| RNA-binding protein [Medicago truncatula]
gi|355511031|gb|AES92173.1| RNA-binding protein [Medicago truncatula]
Length = 415
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV--------------- 69
++ G++ V++ LL FS + K++R ++++ +GFV
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 70 --------SFKDPQDFIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
S K + R +E + F +F GDL +VTD L FS Y S A+V+
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVM 163
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 164 WDQKTGRSRGFGFVSFRNQQE---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
F +F GDL +VTD L FS Y S A+V+ D++T +++GFGFVSF++ Q+ A
Sbjct: 130 HFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQE---AQ 186
Query: 82 KEMND 86
+ND
Sbjct: 187 SAIND 191
>gi|45201486|ref|NP_987056.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|44986420|gb|AAS54880.1| AGR390Cp [Ashbya gossypii ATCC 10895]
gi|374110307|gb|AEY99212.1| FAGR390Cp [Ashbya gossypii FDAG1]
Length = 378
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 24/154 (15%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
K + +D L+ G+L + + L + F KV+ DK N+ + FV ++ P
Sbjct: 27 KGGRETSDRILYVGNLDKTINEATLKQYFQVGGPIANVKVLVDK-NNEEANYAFVEYRQP 85
Query: 75 QD-----------------------FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKY 111
+D F +D F LF GDL DV DE L TF ++
Sbjct: 86 RDANVAFQTLDGKQIENNVIKINWAFQSQQVSSDDTFNLFVGDLNVDVDDETLSSTFKEF 145
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
P+F++A V+ D ++ +++G+GFVSF + ++ +A
Sbjct: 146 PTFIQAHVMWDMQSGRSRGYGFVSFGEQEEAQKA 179
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 149
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 150 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 193
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 328
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 329 REFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 371
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 118 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 175
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 176 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 235
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 236 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 269
>gi|449300060|gb|EMC96073.1| hypothetical protein BAUCODRAFT_53791, partial [Baudoinia
compniacensis UAMH 10762]
Length = 112
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G W T D FRL G+L +VTD+ L + F+ Y KA+VVRDKRT
Sbjct: 3 IRKGGGEQWEDNTLLDWDPTHFRLMVGNLAGEVTDDSLAKAFASY-GVSKARVVRDKRTT 61
Query: 62 KTKGFGFVSFKDPQDFIRANKEM 84
K+KGFGFVSF D + RA +EM
Sbjct: 62 KSKGFGFVSFFDGEQGFRAAREM 84
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRL G+L +VTD+ L + F+ Y KA+VVRDKRT K+KGFGFVSF D + RA +
Sbjct: 24 FRLMVGNLAGEVTDDSLAKAFASY-GVSKARVVRDKRTTKSKGFGFVSFFDGEQGFRAAR 82
Query: 148 EM 149
EM
Sbjct: 83 EM 84
>gi|357146461|ref|XP_003574000.1| PREDICTED: splicing factor 3B subunit 4-like [Brachypodium
distachyon]
Length = 359
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L +V ++LL TFS +
Sbjct: 76 EEDADYAIKILNMLKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS+ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1 MLGLRPGPISSWIKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVV 55
ML L PI + K +D+ LF G+L +V ++LL TFS + + K++
Sbjct: 88 MLKLYGKPIR--VNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIM 145
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
RD T ++GFGFVS+ + +A + MN+
Sbjct: 146 RDPETGNSRGFGFVSYDSFESSDQAIEAMNNQH 178
>gi|357479379|ref|XP_003609975.1| RNA-binding protein [Medicago truncatula]
gi|355511030|gb|AES92172.1| RNA-binding protein [Medicago truncatula]
Length = 404
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV--------------- 69
++ G++ V++ LL FS + K++R ++++ +GFV
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 70 --------SFKDPQDFIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
S K + R +E + F +F GDL +VTD L FS Y S A+V+
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVM 163
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 164 WDQKTGRSRGFGFVSFRNQQE---AQSAINDLTGKWLGSRQIRCNWATKG 210
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
F +F GDL +VTD L FS Y S A+V+ D++T +++GFGFVSF++ Q+ A
Sbjct: 130 HFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQE---AQ 186
Query: 82 KEMND 86
+ND
Sbjct: 187 SAIND 191
>gi|294658754|ref|XP_002770838.1| DEHA2F16698p [Debaryomyces hansenii CBS767]
gi|202953359|emb|CAR66359.1| DEHA2F16698p [Debaryomyces hansenii CBS767]
Length = 411
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---DFIR- 79
++F G L D T++ L+ F+KY + ++RD T K++GFGF++FKDP+ + I+
Sbjct: 87 KMFIGGLNWDTTEQGLVEYFTKYGEVIDHTIMRDNNTGKSRGFGFLTFKDPKSVDEVIKT 146
Query: 80 ---------------ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
A +E + ++F G + V ++ FS++ S + A+++ DK
Sbjct: 147 DHILDGKLIDPKRAIAREEQDKVGKIFVGGIDPMVNEKDFNDFFSQFGSIIDAQLMIDKD 206
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 207 TGRSRGFGFITYDSP 221
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
D ++F G L D T++ L+ F+KY + ++RD T K++GFGF++FKDP
Sbjct: 84 DHGKMFIGGLNWDTTEQGLVEYFTKYGEVIDHTIMRDNNTGKSRGFGFLTFKDP 137
>gi|440474936|gb|ELQ43651.1| heterogeneous nuclear ribonucleoprotein A/B [Magnaporthe oryzae
Y34]
gi|440479945|gb|ELQ60674.1| heterogeneous nuclear ribonucleoprotein A/B [Magnaporthe oryzae
P131]
Length = 632
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 184 KMFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPKTVNIVMVK 243
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA E ++F G + + TD+ F+++ + A ++ DK
Sbjct: 244 EHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVVDATLMMDKD 303
Query: 125 TNKTKGFGFVSFK 137
T + +GFGFV+F+
Sbjct: 304 TGRPRGFGFVTFE 316
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 184 KMFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPK 235
Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD+ F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 262 EQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 316
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEMN 252
>gi|159129147|gb|EDP54261.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
A1163]
Length = 608
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 102 KEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNT 161
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + + T++ F+++ + A ++
Sbjct: 162 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLM 221
Query: 121 RDKRTNKTKGFGFVSF 136
DK T + +GFGFV+F
Sbjct: 222 IDKDTGRPRGFGFVTF 237
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 101 IKEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 157
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E ++F G + + T++ F+++ + A ++ DK T + +GFGFV+F
Sbjct: 184 EQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTF 237
>gi|70989777|ref|XP_749738.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
gi|66847369|gb|EAL87700.1| heterogeneous nuclear ribonucleoprotein HRP1 [Aspergillus fumigatus
Af293]
Length = 608
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 19/136 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 102 KEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNT 161
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + + T++ F+++ + A ++
Sbjct: 162 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLM 221
Query: 121 RDKRTNKTKGFGFVSF 136
DK T + +GFGFV+F
Sbjct: 222 IDKDTGRPRGFGFVTF 237
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 101 IKEDGKMFIGGLNWETTDQSLRDYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 157
Score = 38.9 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E ++F G + + T++ F+++ + A ++ DK T + +GFGFV+F
Sbjct: 184 EQEKTSKIFVGGVSQEATEQEFKEFFTQFGRVIDATLMIDKDTGRPRGFGFVTF 237
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 191 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 248
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 249 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 308
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 309 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 342
>gi|330939341|ref|XP_003305832.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
gi|311316974|gb|EFQ86065.1| hypothetical protein PTT_18782 [Pyrenophora teres f. teres 0-1]
Length = 562
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 27/157 (17%)
Query: 7 GPISSWIKKTCEDEN--------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58
G S+ ED+N D ++F G L + T+E L FS++ + V+RD
Sbjct: 81 GADQSYENAPMEDDNYGPINVKEDGKMFIGGLNWETTEESLKNYFSQFGEVSECTVMRDS 140
Query: 59 RTNKTKGFGFVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDLGNDV 99
T +++GFGF++FKDP+ D RA +E ++F G + +
Sbjct: 141 ATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPREEQERTSKIFVGGVSQEA 200
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
T+E F ++ + A ++ DK T + +GFGFV+F
Sbjct: 201 TEEDFTNFFKQFGRVVDATLMMDKETGRPRGFGFVTF 237
Score = 48.9 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + T+E L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 101 VKEDGKMFIGGLNWETTEESLKNYFSQFGEVSECTVMRDSATGRSRGFGFLTFKDPK 157
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 43/166 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + + TD+ L+ FSK+ V+ K +K+KGFGFVSF++P+D A KEM
Sbjct: 168 VYVKNFDENFTDQCLVDLFSKFGKIQSCVVM--KEDDKSKGFGFVSFENPEDAEAAVKEM 225
Query: 85 ND----------------------------------------DFRLFCGDLGNDVTDELL 104
N+ L+ +L + V D L
Sbjct: 226 NEYQLPSGKKLYVGRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDDAQL 285
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F K+ AKV+ D++ ++KGFGFV F P + RA EMN
Sbjct: 286 RKAFEKFGVITSAKVMTDEK-GQSKGFGFVCFSSPDEATRAVSEMN 330
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 10/147 (6%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-DFIRANKE 83
+F +L D+ + + TFS + + L KV D+ +KG+G+V P+ +R E
Sbjct: 102 VFIKNLDKDIDHKAIYDTFSNFGNILSCKVATDE-NGVSKGYGYVGKFIPRAQRMREIGE 160
Query: 84 MNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
F ++ + + TD+ L+ FSK+ V+ K +K+KGFGFVSF++P+D
Sbjct: 161 TTRKFTNVYVKNFDENFTDQCLVDLFSKFGKIQSCVVM--KEDDKSKGFGFVSFENPEDA 218
Query: 143 IRANKEMNEF-----PHLFVGDLKTRS 164
A KEMNE+ L+VG + ++
Sbjct: 219 EAAVKEMNEYQLPSGKKLYVGRAQKKA 245
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 29/150 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+++ D RA M
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALDTM 73
Query: 85 NDD-----------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L D+ + + TFS + + L KV
Sbjct: 74 NFDPVFGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKDIDHKAIYDTFSNFGNILSCKVAT 133
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
D+ +KG+G+V FI + M E
Sbjct: 134 DE-NGVSKGYGYVG-----KFIPRAQRMRE 157
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L + V D L + F K+ AKV+ D++ ++KGFGFV F P + RA EM
Sbjct: 271 LYLKNLDDSVDDAQLRKAFEKFGVITSAKVMTDEK-GQSKGFGFVCFSSPDEATRAVSEM 329
Query: 85 ND 86
N+
Sbjct: 330 NN 331
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+++ D RA M
Sbjct: 14 LYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSLGYAYVNYQQTPDAERALDTM 73
Query: 150 NEFP 153
N P
Sbjct: 74 NFDP 77
>gi|326519747|dbj|BAK00246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 23/160 (14%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ + E D + G+L V++ELL F + + V +D+ TN +G+GFV F+
Sbjct: 16 QHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L +V ++LL TFS +
Sbjct: 76 EEDADYAIKILNMLKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ K++RD T ++GFGFVS+ + +A + MN
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMN 175
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1 MLGLRPGPISSWIKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVV 55
ML L PI + K +D+ LF G+L +V ++LL TFS + + K++
Sbjct: 88 MLKLYGKPIR--VNKASQDKKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGVIVTNPKIM 145
Query: 56 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
RD T ++GFGFVS+ + +A + MN+
Sbjct: 146 RDPETGNSRGFGFVSYDSFESSDQAIEAMNNQH 178
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D T K+KGFGFVSF+ ++ +A +EM
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 238
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 239 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 298
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 299 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 341
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 145
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 146 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTL 205
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K+KGFGFVSF+ ++ +A +EMN
Sbjct: 206 SVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEMN 239
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 31/153 (20%)
Query: 40 IRTFSKYPSF--LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF--------- 88
+ + P F L +V RD T ++ + +V+F+ P D RA MN D
Sbjct: 13 LEALEENPRFPVLSIRVCRDMITRRSLFYAYVNFQQPADAERALDTMNFDVIKGKPIRIM 72
Query: 89 --------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV
Sbjct: 73 WSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFV 130
Query: 135 SFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
F+ RA ++MN +FVG K+R
Sbjct: 131 HFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 163
>gi|255760009|ref|NP_001157550.1| nucleolysin TIA-1 isoform 2 [Mus musculus]
gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]
Length = 377
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D RT + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHA 61
Query: 78 IRANKEMN-------------------------DDFRLFCGDLGNDVTDELLIRTFSKYP 112
A MN + F +F GDL ++T E + F+ +
Sbjct: 62 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 121
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
A+VV+D T K+KG+GFVSF + D A ++M
Sbjct: 122 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 158
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ G+L DVT+ L+++ FS+ K++ D RT + FV F + + A M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAM 68
Query: 150 N 150
N
Sbjct: 69 N 69
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D T K+KGFGFVSF+ ++ +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 36/173 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
KV+ D T K+KGFGFVSF+ ++ +A +EMN LFVG + ++
Sbjct: 219 SVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKA 270
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 36/163 (22%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD- 76
E D +LF G+L DV E L + F A+V+ ++ T++++GFGFV+ ++
Sbjct: 106 EPPEDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 165
Query: 77 ---------------FI-------------RANKEMNDDFRLFCGDLGNDVTDELLIRTF 108
F+ RA +E FR++ G+L DV D L + F
Sbjct: 166 EKAVELYHKFEVNGRFLTVNKAAPRGSRPERAPREYEPSFRVYVGNLPWDVDDARLEQVF 225
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
S++ L A+VV D+ T +++GF FV+ + + EMNE
Sbjct: 226 SEHGKVLSARVVSDRETGRSRGFAFVT-------MASESEMNE 261
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
+E +D +LF G+L DV E L + F A+V+ ++ T++++GFGFV+ ++
Sbjct: 105 QEPPEDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 164
Query: 142 FIRANKEMNEF 152
+A + ++F
Sbjct: 165 AEKAVELYHKF 175
>gi|225441409|ref|XP_002278602.1| PREDICTED: DAZ-associated protein 1-like [Vitis vinifera]
Length = 355
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 9 ISSWIKKTCEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
I+ IK + R LF L + T E L F + + V+ DK T K++G+G
Sbjct: 63 IAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYG 122
Query: 68 FVSFK---DPQDFIRANKEMND-----------------------DFRLFCGDLGNDVTD 101
F+++K Q ++A ++ D +L+ G L DVT
Sbjct: 123 FITYKHMESTQSALQAPSKLIDGRMAVCNLACEGLSGASTTPDQAQRKLYIGGLAPDVTS 182
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG 158
E+L+ F ++ + V DK TN+++GFGFV++K + A K+ + P F+G
Sbjct: 183 EVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKT----VEAAKKAIDDPQKFLG 235
>gi|255574179|ref|XP_002528005.1| nucleolysin tia-1, putative [Ricinus communis]
gi|223532631|gb|EEF34417.1| nucleolysin tia-1, putative [Ricinus communis]
Length = 417
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT++LL F K++R +++ +GFV + D
Sbjct: 41 VYVGNIHVNVTEKLLAEVFQTAGPLAGCKLIRKDKSS----YGFVDYHDRSCAAVAIMTL 96
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ AN + D F +F GDL +VTD L FS Y S A+V+
Sbjct: 97 HGRQLYGQALKVNWAYANSQREDTSGHFHIFVGDLSPEVTDATLFACFSVYNSCSDARVM 156
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF++ ++ A +N+ ++G+ + R + KG
Sbjct: 157 WDHKTGRSKGYGFVSFRNQRE---AQSAINDLSGKWLGNRQIRCNWATKG 203
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 63/198 (31%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + E+ F +F GDL +VTD L FS Y S A+V+ D +T ++KG+GF
Sbjct: 110 WAYANSQREDTSGHFHIFVGDLSPEVTDATLFACFSVYNSCSDARVMWDHKTGRSKGYGF 169
Query: 69 VSFKDPQDF----------------IRAN-----------KEMNDD-------------- 87
VSF++ ++ IR N K++ D+
Sbjct: 170 VSFRNQREAQSAINDLSGKWLGNRQIRCNWATKGSASNEDKQIGDNQNAVILTSGSSEGG 229
Query: 88 ---------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
++ G+L ++VT L F L A ++ + R + KGFG
Sbjct: 230 QENANEDAPENNPAYTTVYVGNLCHEVTQSELHCQFHT----LGAGIIEEVRVQRDKGFG 285
Query: 133 FVSFKDPQDFIRANKEMN 150
FV + ++ A + N
Sbjct: 286 FVRYTTHEEAASAIQMAN 303
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 178
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 238
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 239 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 272
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 331
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 332 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 374
>gi|148666754|gb|EDK99170.1| cytotoxic granule-associated RNA binding protein 1, isoform CRA_d
[Mus musculus]
Length = 385
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 25/157 (15%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D RT + FV F + +
Sbjct: 10 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHA 69
Query: 78 IRANKEMN-------------------------DDFRLFCGDLGNDVTDELLIRTFSKYP 112
A MN + F +F GDL ++T E + F+ +
Sbjct: 70 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 129
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
A+VV+D T K+KG+GFVSF + D A ++M
Sbjct: 130 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 166
Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ G+L DVT+ L+++ FS+ K++ D RT + FV F + + A M
Sbjct: 17 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAM 76
Query: 150 N 150
N
Sbjct: 77 N 77
>gi|297739851|emb|CBI30033.3| unnamed protein product [Vitis vinifera]
Length = 342
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 31/177 (17%)
Query: 9 ISSWIKKTCEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
I+ IK + R LF L + T E L F + + V+ DK T K++G+G
Sbjct: 50 IAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRLHGEIEEGAVIVDKTTGKSRGYG 109
Query: 68 FVSFK---DPQDFIRANKEMND-----------------------DFRLFCGDLGNDVTD 101
F+++K Q ++A ++ D +L+ G L DVT
Sbjct: 110 FITYKHMESTQSALQAPSKLIDGRMAVCNLACEGLSGASTTPDQAQRKLYIGGLAPDVTS 169
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG 158
E+L+ F ++ + V DK TN+++GFGFV++K + A K+ + P F+G
Sbjct: 170 EVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKT----VEAAKKAIDDPQKFLG 222
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 28/167 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+ D+ L FS+ A V RD + K+ G+G+V+F+DP+D RA ++M
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + L TFS + L K+
Sbjct: 64 NYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLAKTIEQKELYDTFSLFGRILSCKIAM 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP----HLFVGDLKTRS 164
D+ N +KG+GFV F++ + RA +++N ++VG+ RS
Sbjct: 124 DENGN-SKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRS 169
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 42/158 (26%)
Query: 33 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN------- 85
+ DE L F+++ A V++D K+KGFGFV + +P+ A M+
Sbjct: 191 ETDDEKLKEMFTEFGEIKSACVMKDSE-GKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGR 249
Query: 86 ---------------------------------DDFRLFCGDLGNDVTDELLIRTFSKYP 112
+ L+ +L +++ DE L FSKY
Sbjct: 250 SLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERLKEIFSKYG 309
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKV+ D N++KGFGFV F +P+ +A E N
Sbjct: 310 PISSAKVMTDS-NNRSKGFGFVCFTNPEQATKAVTEAN 346
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ L+ +L +++ DE L FSKY AKV+ D N++KGFGFV F +P+ +A
Sbjct: 283 SNVNLYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDS-NNRSKGFGFVCFTNPEQATKA 341
Query: 81 NKEMN 85
E N
Sbjct: 342 VTEAN 346
>gi|389623913|ref|XP_003709610.1| hypothetical protein MGG_06881 [Magnaporthe oryzae 70-15]
gi|351649139|gb|EHA56998.1| hypothetical protein MGG_06881 [Magnaporthe oryzae 70-15]
Length = 568
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 116 KEDGKMFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPKTVNI 175
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + + TD+ F+++ + A ++
Sbjct: 176 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVVDATLM 235
Query: 121 RDKRTNKTKGFGFVSFK 137
DK T + +GFGFV+F+
Sbjct: 236 MDKDTGRPRGFGFVTFE 252
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TDE L FS++ ++ V+RD T +++GFGF++FKDP+
Sbjct: 117 EDGKMFIGGLNWETTDESLRDYFSQFGEVIECTVMRDGTTGRSRGFGFLTFKDPK 171
Score = 38.9 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD+ F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 198 EQEKTSKIFVGGVSQETTDQEFKDFFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 252
>gi|356559021|ref|XP_003547800.1| PREDICTED: nucleolysin TIAR-like [Glycine max]
Length = 416
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ K++R +++ +GF+ + D + A +
Sbjct: 55 VYVGNIHTQVTEPLLQEVFAGTGPVEACKLIRKDKSS----YGFIHYFDRRSAALAILSL 110
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N + +F GDL +VTD L FS YP+ A+V+
Sbjct: 111 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPTCSDARVM 170
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 171 WDQKTGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 217
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L FS YP+ A+V+ D++T +++GFGF
Sbjct: 124 WAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPTCSDARVMWDQKTGRSRGFGF 183
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ QD A +ND
Sbjct: 184 VSFRNQQD---AQSAIND 198
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 154
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 155 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 188
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 248 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 290
>gi|344281910|ref|XP_003412719.1| PREDICTED: hypothetical protein LOC100664266 [Loxodonta africana]
Length = 708
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 353 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 412
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 413 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVAC 472
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKT 162
D++ KG+GFV F++ + RA MN + +FVG K+
Sbjct: 473 DEK--GPKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKS 515
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD + ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSR 176
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T ++KGFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMN 252
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FS++ L KV+ D T ++KGFGFV+F+ ++ +A +M
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|346326836|gb|EGX96432.1| RNA recognition protein, RNP-1 [Cordyceps militaris CM01]
Length = 525
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
++D ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++FKD +
Sbjct: 112 KDDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFGFLTFKDAKTVNI 171
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + D TD+ F+++ + A ++
Sbjct: 172 VMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFREFFAQFGRVIDATLM 231
Query: 121 RDKRTNKTKGFGFVSFK 137
DK T + +GFGFV+F+
Sbjct: 232 MDKDTGRPRGFGFVTFE 248
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
DD ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++FKD +
Sbjct: 113 DDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFGFLTFKDAK 167
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + D TD+ F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 194 EQEKTSKIFVGGVSQDTTDQEFREFFAQFGRVIDATLMMDKDTGRPRGFGFVTFE 248
>gi|27469824|gb|AAH41956.1| PABPC1L2B protein [Homo sapiens]
Length = 243
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 17 CEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
CE DF+ L+ GDL +VT+ +L FS L + RDK T ++ G+ +V+++
Sbjct: 36 CEGNPDFQMASLYVGDLHPEVTEAMLYEKFSPAGPILSISICRDKITRRSLGYAYVNYQQ 95
Query: 74 PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTFSK 110
P D RA + +N D +F +LG + ++ L FS
Sbjct: 96 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 155
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
+ + L KV D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 156 FGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 210
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQ 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T + + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L VV
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
>gi|322693766|gb|EFY85615.1| TIA1 cytotoxic granule-associated RNA binding protein [Metarhizium
acridum CQMa 102]
Length = 444
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ + N L+ G L VT+++L + F K++ DK + + + S
Sbjct: 75 RRAAPEPNKRALYVGGLEQRVTEDVLRQIFETTGHVQNVKIIPDKNEIRVN-WAYQSNT- 132
Query: 74 PQDFIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
+NKE + F +F GDL N+V D++L++ FS + + +A+V+ D +T +T+G+G
Sbjct: 133 ------SNKEDTSSHFHIFVGDLSNEVNDDILLQAFSAFGTVSEARVMWDMKTGRTRGYG 186
Query: 133 FVSFKDPQDFIRANKEM 149
FV+F+D D +A M
Sbjct: 187 FVAFRDRSDAEKALSSM 203
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 46/66 (69%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL N+V D++L++ FS + + +A+V+ D +T +T+G+GFV+F+D D +A
Sbjct: 142 FHIFVGDLSNEVNDDILLQAFSAFGTVSEARVMWDMKTGRTRGYGFVAFRDRSDAEKALS 201
Query: 83 EMNDDF 88
M+ ++
Sbjct: 202 SMDGEW 207
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLQ 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T + + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L VV
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
>gi|226478812|emb|CAX72901.1| RNA-binding protein Musashi homolog 2 [Schistosoma japonicum]
Length = 345
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 10 SSWIKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+S I ++ D ND ++F G L T E+L F KY + ++RD T +++GFGF
Sbjct: 64 TSLIMESNADSNDPGKMFIGGLSPTTTSEVLRDYFQKYGELREYMIMRDPLTKRSRGFGF 123
Query: 69 VSFKDP---QDFIRANKEMND-----------------------DFRLFCGDLGNDVTDE 102
V+F DP + + A + D R+F G + T+E
Sbjct: 124 VTFSDPMCVEKVLEAAPHILDFKKIDPKLAVPRKSGQNTKISTKTKRVFIGGVATQTTNE 183
Query: 103 LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
L FS++ +++ DK TN+ +GFGFV+F+
Sbjct: 184 ELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFES 219
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 77 FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ +N + ND ++F G L T E+L F KY + ++RD T +++GFGFV+F
Sbjct: 67 IMESNADSNDPGKMFIGGLSPTTTSEVLRDYFQKYGELREYMIMRDPLTKRSRGFGFVTF 126
Query: 137 KDPQDFIRANKEMNEFPHLF 156
DP + K + PH+
Sbjct: 127 SDP---MCVEKVLEAAPHIL 143
>gi|297742974|emb|CBI35841.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ V++ LL F+ K+VR ++++ +GF+ + D + A +
Sbjct: 42 VYVGNIHTQVSEPLLQEVFASTGPVEGCKLVRKEKSS----YGFIHYFDRRSAALAILSL 97
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L FS +PS A+V+
Sbjct: 98 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVM 157
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 158 WDQKTGRSRGFGFVSFRNQQD---AQSAINDITGKWLGSRQIRCNWATKG 204
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS +PS A+V+ D++T +++GFGF
Sbjct: 111 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGF 170
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ QD A +ND
Sbjct: 171 VSFRNQQD---AQSAIND 185
>gi|225442061|ref|XP_002270823.1| PREDICTED: nucleolysin TIAR [Vitis vinifera]
Length = 420
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ V++ LL F+ K+VR ++++ +GF+ + D + A +
Sbjct: 55 VYVGNIHTQVSEPLLQEVFASTGPVEGCKLVRKEKSS----YGFIHYFDRRSAALAILSL 110
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L FS +PS A+V+
Sbjct: 111 NGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVM 170
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 171 WDQKTGRSRGFGFVSFRNQQD---AQSAINDITGKWLGSRQIRCNWATKG 217
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS +PS A+V+ D++T +++GFGF
Sbjct: 124 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVFPSCSDARVMWDQKTGRSRGFGF 183
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ QD A +ND
Sbjct: 184 VSFRNQQD---AQSAIND 198
>gi|350015551|dbj|GAA42894.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Clonorchis
sinensis]
Length = 292
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 25/144 (17%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DF 77
+ D +LF G L +E L +S++ V++D R+NK++GFGFV+FK+ D
Sbjct: 10 DQDKKLFVGGLNPKTNEESLRSYYSQWGEITDVVVMKDPRSNKSRGFGFVTFKEAASVDK 69
Query: 78 IRANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSF 114
+AN+ D ++F G L DVT++ L F +Y +
Sbjct: 70 AQANRPHKLDGKEVDSKRAMPREETSPEVHAAVKKIFVGGLKKDVTNDDLAEYFGQYGTV 129
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKD 138
A++V K TN ++GF FV+F D
Sbjct: 130 TDAQIVMAKDTNTSRGFAFVTFDD 153
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + + D +LF G L +E L +S++ V++D R+NK++GFGFV+FK+
Sbjct: 5 GDSKADQDKKLFVGGLNPKTNEESLRSYYSQWGEITDVVVMKDPRSNKSRGFGFVTFKEA 64
Query: 140 Q--DFIRANKEMNEFPHLFVG 158
D +AN+ PH G
Sbjct: 65 ASVDKAQANR-----PHKLDG 80
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 220 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 279
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 280 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 322
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ + +V+F+ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
N F + G + I + PS ++ VV D+ N +KG+GFV F+ + R
Sbjct: 73 N--FDVIKG-------KPVRIMWSQRDPSLRRSGVVCDE--NGSKGYGFVHFETHEAAER 121
Query: 145 ANKEMN----EFPHLFVGDLKTR 163
A ++MN +FVG K+R
Sbjct: 122 AIEKMNGTLLNDRKVFVGRFKSR 144
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 36/145 (24%)
Query: 47 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----DDFRLFCG--------- 93
PS ++ VV D+ N +KG+GFV F+ + RA ++MN +D ++F G
Sbjct: 91 PSLRRSGVVCDE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKERE 148
Query: 94 ----------------DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
+ G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+
Sbjct: 149 AELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFE 207
Query: 138 DPQDFIRANKEMN----EFPHLFVG 158
+D +A EMN H++VG
Sbjct: 208 RHEDAQKAVDEMNGKELNGKHIYVG 232
>gi|452840300|gb|EME42238.1| hypothetical protein DOTSEDRAFT_73158 [Dothistroma septosporum
NZE10]
Length = 379
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 4 LRPGPISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G SW K+ D FR+ G+L +VTD+ L + F+ Y KA+V+RDKRT
Sbjct: 222 VRKGGGESWEDKSLLEWDPTKFRIMVGNLAGEVTDDSLTKAFANY-GVNKARVIRDKRTT 280
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KGFGFV F D + +A +EM+ +
Sbjct: 281 KSKGFGFVEFTDGEQGFKAAREMSGKY 307
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FR+ G+L +VTD+ L + F+ Y KA+V+RDKRT K+KGFGFV F D + +A +
Sbjct: 243 FRIMVGNLAGEVTDDSLTKAFANY-GVNKARVIRDKRTTKSKGFGFVEFTDGEQGFKAAR 301
Query: 148 EM 149
EM
Sbjct: 302 EM 303
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG + ++ L TF + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 56 IFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDE--NGSKGYGFVHFETQEAVERAIEKM 113
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
+ +DF++F G + G D+ DE L F K+ L
Sbjct: 114 SGMLLNDFKVFVGQFKSRKEREAELGARAKEFTNVYIKNFGEDMDDEHLKDLFGKFGPAL 173
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 174 RVKVMTDE-SGKSKGFGFVSFERHEDAQKAVNEMN 207
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 137 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 194
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 195 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 254
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 255 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 288
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 287
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 288 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 347
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 348 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 390
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS+ L +V RD T ++ + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + +++L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNIFVKNLDKSINNKVLYDTVSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSR 176
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + +++L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKVLYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGTLLNDRKVFVGRFKSRKEREAELGAKVKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+E+ L+ G+L V + +L FS + + ++V+D+ T + G FV F+D Q
Sbjct: 1 NEDAKALYVGNLHPYVNEAVLQDIFSTLGTVSEVRIVKDRATGNSAGSAFVKFEDHQAAA 60
Query: 79 RANKEMN------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSF 114
A K +N +F G+L DV D +L++ F
Sbjct: 61 IALKTINGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGEC 120
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163
A+V+ D T ++KGFGFVSF+ + A K + E VG K R
Sbjct: 121 SDARVMWDHSTGRSKGFGFVSFRTKE---AAEKALAEMDGAQVGQWKIR 166
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 40/171 (23%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+KT + +F G+L DV D +L++ F A+V+ D T ++KGFGFVSF+
Sbjct: 85 EKTENTASHSHIFVGNLSGDVADPVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRT 144
Query: 74 PQDFIRANKEMND----------------------------------DFRLFCGDLGNDV 99
+ +A EM+ + ++ G+L +V
Sbjct: 145 KEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPANTNVYVGNLPTEV 204
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+E L F Y K G+GFV+++D ++A MN
Sbjct: 205 MEEDLRAAFGAYGEITGLKPCHK------GGYGFVTYRDHSAAVQAIVGMN 249
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD + ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N ++G GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T ++KGFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMMDN-TGRSKGFGFVNFEKHEEAQKAVADMN 252
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FS++ L KV+ D T ++KGFGFV+F+ ++ +A +M
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDN-TGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVS 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG GFV F+ + RA ++MN +FVG K++
Sbjct: 133 DE--NGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQ 176
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 36/167 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG GFV F+ + RA ++M
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+ + DE L F ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAELGTGTKEFTNVYIKNFGDRMDDETLNGLFGRFGQIL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVG 158
KV+ D+ K+KGFGFVSF+ +D +A EMN H++VG
Sbjct: 219 SVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVG 264
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+ + DE L F ++ L KV+ D+ K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N-----------------DD----------------------FRLFCGDLGNDVTDELLI 105
N DD L+ +L + + DE L
Sbjct: 252 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDDERLQ 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + KV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMN 354
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 325
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 326 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 385
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 386 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 419
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 418
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 419 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 478
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 479 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 521
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 286
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 287 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 329
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 133
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 134 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 193
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 194 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 227
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 38 LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF--------- 88
+L FS L +V RD T ++ G+ +V+F+ P D RA MN D
Sbjct: 1 MLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIM 60
Query: 89 --------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV
Sbjct: 61 WSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFV 118
Query: 135 SFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
F+ + +A ++MN +FVG K+R
Sbjct: 119 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 151
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------DDFR------LFCGDLGNDVTDELLI 105
N D R L+ +L + + D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
>gi|367007988|ref|XP_003688723.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
gi|357527033|emb|CCE66289.1| hypothetical protein TPHA_0P01310 [Tetrapisispora phaffii CBS 4417]
Length = 518
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 21/136 (15%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK----------- 72
++F G L + T++ L F+KY S ++ K+++D T +++GFGF++F+
Sbjct: 165 KMFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFGFLTFENASSVDEVVKT 224
Query: 73 ---------DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
DP+ I +E + ++F G +G DV + F++Y + + A+++ DK
Sbjct: 225 QHILDGKVIDPKRAI-PREEQDKTGKIFVGGIGADVRPKEFEEFFAQYGTIIDAQLMLDK 283
Query: 124 RTNKTKGFGFVSFKDP 139
T +++GFGFV++ P
Sbjct: 284 DTGRSRGFGFVTYDSP 299
Score = 43.9 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
D Q ++A+ D ++F G L + T++ L F+KY S ++ K+++D T +++GFG
Sbjct: 150 DSQRKVKADLS-KDSCKMFIGGLNWETTEDTLRDYFNKYGSVVELKIMKDNNTGRSRGFG 208
Query: 133 FVSFKD 138
F++F++
Sbjct: 209 FLTFEN 214
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + ++F G +G DV + F++Y + + A+++ DK T +++GFGFV++ P
Sbjct: 243 EQDKTGKIFVGGIGADVRPKEFEEFFAQYGTIIDAQLMLDKDTGRSRGFGFVTYDSPDAV 302
Query: 78 IRANKEMNDDFR 89
R + +F+
Sbjct: 303 DRVCQSKYIEFK 314
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------DDFR------LFCGDLGNDVTDELLI 105
N D R L+ +L + + D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------DDFR------LFCGDLGNDVTDELLI 105
N D R L+ +L + + D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
>gi|70995622|ref|XP_752566.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus fumigatus Af293]
gi|66850201|gb|EAL90528.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus fumigatus Af293]
gi|159131321|gb|EDP56434.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus fumigatus A1163]
Length = 489
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ P ++++ + N L+ G L VT+++L + F K++ DK T
Sbjct: 72 MSPTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNDTIT 131
Query: 64 KGFGFVSFK------DPQDFIR------------------ANKE-MNDDFRLFCGDLGND 98
++ P + ANKE + F +F GDL N+
Sbjct: 132 ALLNLMTLVRLRGLCKPSTAVESISRYAEIRVNWAYQSNSANKEDTSSHFHIFVGDLSNE 191
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG 158
V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D A K +N ++G
Sbjct: 192 VNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD---AEKALNAMDGEWLG 248
Query: 159 DLKTR 163
R
Sbjct: 249 SRAIR 253
>gi|413936668|gb|AFW71219.1| hypothetical protein ZEAMMB73_649152 [Zea mays]
Length = 483
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELL-IRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKD----PQDFI 78
L+ GDL + + + L F+ + + K++R+K+T ++G+GF+ F +
Sbjct: 182 LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFSSRATAEHTLM 241
Query: 79 RANKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
N +M D +F GDL +DVTD +L F +KYPS
Sbjct: 242 NFNGQMMPNVEMTFKLNWASASTGDKRGDSGSDHTIFVGDLAHDVTDSMLEDVFRAKYPS 301
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+A VV D+ T KG+GFV F D + A EMN
Sbjct: 302 VRRANVVVDRMTGWPKGYGFVRFGDLNEQAHAMTEMN 338
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 11 SWIKKTCEDE-----NDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTK 64
+W + D+ +D +F GDL +DVTD +L F +KYPS +A VV D+ T K
Sbjct: 258 NWASASTGDKRGDSGSDHTIFVGDLAHDVTDSMLEDVFRAKYPSVRRANVVVDRMTGWPK 317
Query: 65 GFGFVSFKDPQDFIRANKEMN 85
G+GFV F D + A EMN
Sbjct: 318 GYGFVRFGDLNEQAHAMTEMN 338
>gi|297829972|ref|XP_002882868.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
gi|297328708|gb|EFH59127.1| hypothetical protein ARALYDRAFT_478823 [Arabidopsis lyrata subsp.
lyrata]
Length = 430
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ +K++R +++ +GFV + D + A +
Sbjct: 63 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 118
Query: 85 N------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L ++FS + S A+V+
Sbjct: 119 NGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVM 178
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D++T +++GFGFVSF++ QD A EMN
Sbjct: 179 WDQKTGRSRGFGFVSFRNQQDAQTAINEMN 208
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 57/206 (27%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W T + E + F +F GDL +VTD L ++FS + S A+V+ D++T +++GFGF
Sbjct: 132 WAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGF 191
Query: 69 VSFKDPQDFIRANKEMNDDF----RLFC---------GD--------------------- 94
VSF++ QD A EMN + ++ C GD
Sbjct: 192 VSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDG 251
Query: 95 -------------------LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
+GN + E+ +Y L A V+ + R + KGFGFV
Sbjct: 252 KETLNEEAPENNSQFTTVYVGN-LAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVR 310
Query: 136 FKDPQDFIRANKEMNEFPHLFVGDLK 161
+ + A + N P+LF +K
Sbjct: 311 YNTHPEAALAIQMGNTQPYLFNRQIK 336
>gi|449517663|ref|XP_004165864.1| PREDICTED: nucleolysin TIAR-like, partial [Cucumis sativus]
Length = 394
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F K+VR ++++ +GFV + D + A +
Sbjct: 27 VYVGNIHIQVTEPLLQEVFGSIGPVEGCKLVRKEKSS----YGFVHYFDRRSAALAILSL 82
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD +L FS Y S A+V+
Sbjct: 83 NGRHLFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDAMLFACFSAYSSCSDARVM 142
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 143 WDQKTGRSRGFGFVSFRNQQE---AQNAINDLTGKWLGSRQIRCNWAAKG 189
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD +L FS Y S A+V+ D++T +++GFGF
Sbjct: 96 WAYASSQREDTSGHFNIFVGDLSPEVTDAMLFACFSAYSSCSDARVMWDQKTGRSRGFGF 155
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ Q+ A +ND
Sbjct: 156 VSFRNQQE---AQNAIND 170
>gi|431844457|gb|ELK01429.1| Polyadenylate-binding protein 1-like 2 [Pteropus alecto]
Length = 200
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPMDAKRALETL 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKSIDNKALYNIFSAFGNILSCKVAC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 124 DEKG--PKGYGFVHFQKQESAERAINAMNGMFLNYRKIFVGRFKSH 167
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 133
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 134 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 177
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D+ L F KY L KV+ D T K++GFGFVS++ +D +A +EM
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 312
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 313 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 355
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ D+ L F KY L
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K++GFGFVS++ +D +A +EMN
Sbjct: 220 SVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMN 253
>gi|15231783|ref|NP_188026.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9294635|dbj|BAB02974.1| RNA binding protein nucleolysin; oligouridylate binding protein
[Arabidopsis thaliana]
gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|28416511|gb|AAO42786.1| AT3g14100/MAG2_5 [Arabidopsis thaliana]
gi|332641947|gb|AEE75468.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 427
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ +K++R +++ +GFV + D + A +
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 85 N------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L ++FS + S A+V+
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVM 176
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D++T +++GFGFVSF++ QD A EMN
Sbjct: 177 WDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 57/206 (27%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W T + E + F +F GDL +VTD L ++FS + S A+V+ D++T +++GFGF
Sbjct: 130 WAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGF 189
Query: 69 VSFKDPQDFIRANKEMNDDF----RLFC---------GD--------------------- 94
VSF++ QD A EMN + ++ C GD
Sbjct: 190 VSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDG 249
Query: 95 -------------------LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
+GN + E+ +Y L A V+ + R + KGFGFV
Sbjct: 250 KETLNEETPENNSQFTTVYVGN-LAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVR 308
Query: 136 FKDPQDFIRANKEMNEFPHLFVGDLK 161
+ + A + N P+LF +K
Sbjct: 309 YNTHPEAALAIQMGNTQPYLFNRQIK 334
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T + + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L VV
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSR 176
>gi|21593280|gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ +K++R +++ +GFV + D + A +
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 85 N------------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD L ++FS + S A+V+
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVM 176
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D++T +++GFGFVSF++ QD A EMN
Sbjct: 177 WDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 57/206 (27%)
Query: 12 WIKKTCEDE---NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W T + E + F +F GDL +VTD L ++FS + S A+V+ D++T +++GFGF
Sbjct: 130 WAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGF 189
Query: 69 VSFKDPQDFIRANKEMNDDF----RLFC---------GD--------------------- 94
VSF++ QD A EMN + ++ C GD
Sbjct: 190 VSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDG 249
Query: 95 -------------------LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
+GN + E+ +Y L A V+ + R + KGFGFV
Sbjct: 250 KETLNEETPENNSQFTTVYVGN-LAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVR 308
Query: 136 FKDPQDFIRANKEMNEFPHLFVGDLK 161
+ + A + N P+LF +K
Sbjct: 309 YNTHPEAALAIQMGNTQPYLFNRQIK 334
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 85
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L FSKY L
Sbjct: 86 NGMLLNDRKVFVGRFKSRKERGAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFSKYGPAL 145
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D+ + K+KGFGFVSF+ +D RA EMN
Sbjct: 146 SIRVMTDE-SGKSKGFGFVSFERHEDAQRAVDEMN 179
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L +V+ D+ + K+KGFGFVSF+ +D RA EM
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQRAVDEM 178
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 179 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 238
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 239 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 281
>gi|354547999|emb|CCE44734.1| hypothetical protein CPAR2_405380 [Candida parapsilosis]
Length = 513
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP--------Q 75
++F G L D T+E L+ FSK+ +++D T +++GFGF++FKDP Q
Sbjct: 194 KMFIGGLNWDTTEEGLVNYFSKFGEITDYTIMKDNATGRSRGFGFLTFKDPSAVDVVIKQ 253
Query: 76 DFI---------RANKEMNDDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D I RA + D ++F G + V++ FSK+ + + +++ DK
Sbjct: 254 DHILDGKLIDPKRAISREDQDRVGKIFIGGIDPMVSEGEFNEFFSKFGTIIDCQLMIDKD 313
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF++F P
Sbjct: 314 TGRSRGFGFITFDSP 328
>gi|301107790|ref|XP_002902977.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098095|gb|EEY56147.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 382
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 26/152 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GD+ + + FS K++RDK T G+GF+ F Q + + +
Sbjct: 8 LWMGDIQMHWDEAFITSLFSSAAEQPVVKLIRDKVTGYPAGYGFLEFPTQQGAQQVLETL 67
Query: 85 N-------------------------DDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAK 118
N DD +F GDL DVTDELL+ TF +++ + AK
Sbjct: 68 NGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLATFNARFTTVRGAK 127
Query: 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
VV D T +KGFGFV F ++ +A + MN
Sbjct: 128 VVMDPVTRMSKGFGFVRFGSKEEADQALQTMN 159
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
E +D +F GDL DVTDELL+ TF +++ + AKVV D T +KGFGFV F ++
Sbjct: 91 ETSDDHSIFVGDLAPDVTDELLLATFNARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEE 150
Query: 77 FIRANKEMNDDFRLFC 92
+A + MN ++C
Sbjct: 151 ADQALQTMNG---VYC 163
>gi|344281908|ref|XP_003412718.1| PREDICTED: hypothetical protein LOC100663984 [Loxodonta africana]
Length = 640
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 444 LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 503
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 504 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSTFGNILSCKVAC 563
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKT 162
D++ KG+GFV F++ + RA MN + +FVG K+
Sbjct: 564 DEK--GPKGYGFVHFQEQESAERAIDVMNGMFLNYRKIFVGRFKS 606
>gi|302804260|ref|XP_002983882.1| hypothetical protein SELMODRAFT_27842 [Selaginella moellendorffii]
gi|300148234|gb|EFJ14894.1| hypothetical protein SELMODRAFT_27842 [Selaginella moellendorffii]
Length = 146
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF L + T + L F Y + V+ DK T K++GFGF++FK RA KE
Sbjct: 1 KLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKE 60
Query: 84 MNDDF-------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT-K 129
+ +L+ G L + ++E L+ FS+Y + V DK TNK+ +
Sbjct: 61 PSKTIDVSESRSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRR 120
Query: 130 GFGFVSFKDPQ 140
GF F+++K +
Sbjct: 121 GFAFITYKSVE 131
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT-KGFGFVSFKDPQDF 77
D+ +L+ G L + ++E L+ FS+Y + V DK TNK+ +GF F+++K
Sbjct: 74 DQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRRGFAFITYKS---- 129
Query: 78 IRANKEMNDD 87
+ A ++ DD
Sbjct: 130 VEAARKAIDD 139
>gi|453084738|gb|EMF12782.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 536
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 19/138 (13%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ---- 75
+ D ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++F+DP+
Sbjct: 99 KEDGKMFIGGLNWETTDQSLKDYFSQFGEVIECTVMRDGATGRSRGFGFLTFRDPKTVNT 158
Query: 76 -------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
D RA E ++F G + D T++ F K+ L A ++
Sbjct: 159 VMVKEHSLDGKLIDPKRAIPRDEQERTAKIFVGGVSQDATEQDFEAFFQKFGRVLDATLM 218
Query: 121 RDKRTNKTKGFGFVSFKD 138
DK T + +GFGFV+F +
Sbjct: 219 MDKDTGRPRGFGFVTFDN 236
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 71 FKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 130
F++P+ R +D ++F G L + TD+ L FS++ ++ V+RD T +++G
Sbjct: 85 FREPEPDNRPLIGSKEDGKMFIGGLNWETTDQSLKDYFSQFGEVIECTVMRDGATGRSRG 144
Query: 131 FGFVSFKDPQ 140
FGF++F+DP+
Sbjct: 145 FGFLTFRDPK 154
Score = 40.4 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
E E ++F G + D T++ F K+ L A ++ DK T + +GFGFV+F +
Sbjct: 181 EQERTAKIFVGGVSQDATEQDFEAFFQKFGRVLDATLMMDKDTGRPRGFGFVTFDN 236
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 43/170 (25%)
Query: 21 NDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N+F ++ + G+D+ DE L FSKY L KV+ D + K+KGFGFVSF + +
Sbjct: 286 NEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKK 344
Query: 80 ANKEMN---------------------------------------DDFRLFCGDLGNDVT 100
A +EMN +L+ +L + +
Sbjct: 345 AVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTID 404
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DE L R FS + S + K++R++ ++KGFG + F P++ +A EMN
Sbjct: 405 DEKLWREFSSFGSISRVKIMREE--GRSKGFGLICFSSPEEATKAMAEMN 452
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 36/173 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + L +KV+ D + ++G+ FV F++ RA +EM
Sbjct: 199 VFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 256
Query: 85 ND----DFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N D RLF G + G+D+ DE L FSKY L
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELRNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 316
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
KV+ D + K+KGFGFVSF + +A +EMN LFVG + +S
Sbjct: 317 SVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKS 368
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL + FS L ++ RD T ++ G+ +V+F D RA M
Sbjct: 111 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQRALDTM 170
Query: 85 NDD------FRL-----------------FCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D RL F +L + ++ L FS + L +KV+
Sbjct: 171 NFDTIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMS 230
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++G+ FV F++ RA +EMN LFVG K R
Sbjct: 231 DDQG--SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNR 274
>gi|449453379|ref|XP_004144435.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 422
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F K+VR ++++ +GFV + D + A +
Sbjct: 55 VYVGNIHIQVTEPLLQEVFGSIGPVEGCKLVRKEKSS----YGFVHYFDRRSAALAILSL 110
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N F +F GDL +VTD +L FS Y S A+V+
Sbjct: 111 NGRHLFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDAMLFACFSAYSSCSDARVM 170
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ Q+ A +N+ ++G + R + KG
Sbjct: 171 WDQKTGRSRGFGFVSFRNQQE---AQNAINDLTGKWLGSRQIRCNWAAKG 217
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD +L FS Y S A+V+ D++T +++GFGF
Sbjct: 124 WAYASSQREDTSGHFNIFVGDLSPEVTDAMLFACFSAYSSCSDARVMWDQKTGRSRGFGF 183
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ Q+ A +ND
Sbjct: 184 VSFRNQQE---AQNAIND 198
>gi|297304162|ref|XP_002806331.1| PREDICTED: polyadenylate-binding protein 1-like 2-like, partial
[Macaca mulatta]
Length = 249
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%)
Query: 17 CEDENDF---RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
CE DF L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++
Sbjct: 42 CEGNPDFPMASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQ 101
Query: 74 PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTDELLIRTFSK 110
P D RA + +N D +F +LG + ++ L FS
Sbjct: 102 PVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSA 161
Query: 111 YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
+ + L KV D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 162 FGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 216
>gi|366992097|ref|XP_003675814.1| hypothetical protein NCAS_0C04600 [Naumovozyma castellii CBS 4309]
gi|342301679|emb|CCC69450.1| hypothetical protein NCAS_0C04600 [Naumovozyma castellii CBS 4309]
Length = 581
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 79/149 (53%), Gaps = 21/149 (14%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+++ ++F G L + T++ L FSKY + ++ K+++D T +++GFGF++F++P
Sbjct: 193 KDNCKMFIGGLNWETTEDGLKNYFSKYGNVVELKIMKDGATGRSRGFGFLTFENPSSVDE 252
Query: 80 ANK-------------------EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
K E + ++F G +G DV + F++Y + + A+++
Sbjct: 253 VVKTQHILDGKVIDPKRSIPREEQDKTGKIFVGGIGTDVRPKEFEDFFAQYGTIIDAQLM 312
Query: 121 RDKRTNKTKGFGFVSFK--DPQDFIRANK 147
DK T +++GFGFV++ D D + NK
Sbjct: 313 LDKDTGRSRGFGFVTYDSGDAVDRVCQNK 341
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK--DPQ 75
E + ++F G +G DV + F++Y + + A+++ DK T +++GFGFV++ D
Sbjct: 275 EQDKTGKIFVGGIGTDVRPKEFEDFFAQYGTIIDAQLMLDKDTGRSRGFGFVTYDSGDAV 334
Query: 76 DFIRANK 82
D + NK
Sbjct: 335 DRVCQNK 341
>gi|357111822|ref|XP_003557709.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Brachypodium distachyon]
Length = 361
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 27/153 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L G L + + +E L F++ P L A V R+K T K++ FG+++F D + +
Sbjct: 53 LRIGGLLDWMNEEYLRSCFTRSPELLSAVVKRNKETGKSECFGYLNFADHATADQILQSY 112
Query: 85 ND--------DFRL------------------FCGDLGNDVTDELLIRTF-SKYPSFLKA 117
N DFRL + GDL DVTD +L F S+YPS A
Sbjct: 113 NGQKMPNADRDFRLSWVTNYPVQKRDDDGHNIYVGDLAFDVTDFMLHHVFKSRYPSVKHA 172
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
K+ D ++KG+GFV F D + +A EMN
Sbjct: 173 KIAWDHFNGRSKGYGFVVFGDVNERRQAMTEMN 205
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 33/145 (22%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
D++ ++ GDL DVTD +L F S+YPS AK+ D ++KG+GFV F D +
Sbjct: 138 DDDGHNIYVGDLAFDVTDFMLHHVFKSRYPSVKHAKIAWDHFNGRSKGYGFVVFGDVNER 197
Query: 78 IRANKEMNDDF--------------------------RLFCGDLGNDVTDELLIRTFSKY 111
+A EMN + RLF G L VTDE L + FS Y
Sbjct: 198 RQAMTEMNGAYCSTRPMRVGPATKMAGKYSDSDSNNTRLFVGGLDRIVTDEDLKKAFSPY 257
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSF 136
+ KV+ K+ GFV++
Sbjct: 258 GELTEVKVIAGKKC------GFVTY 276
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 4 LRPGPISSWIKKTCE-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
+R GP + K + D N+ RLF G L VTDE L + FS Y + KV+ K+
Sbjct: 214 MRVGPATKMAGKYSDSDSNNTRLFVGGLDRIVTDEDLKKAFSPYGELTEVKVIAGKKC-- 271
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 122
GFV++ + RA+ E + R+ G L D T IR + K K ++
Sbjct: 272 ----GFVTYLN-----RASAE--EAMRILNGSLLGDNT----IRISWGRSLYHKQKHDQN 316
Query: 123 KRTNKTKGFGFVSFKDPQDF-IRANKEMNEFPH 154
+ + +G G P+D + E+PH
Sbjct: 317 QWNGERQGSGPGYRSHPEDPKMHGYTGHPEYPH 349
>gi|226506980|ref|NP_001152183.1| LOC100285821 [Zea mays]
gi|195653617|gb|ACG46276.1| RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K T+ +G+GF+ F + + +
Sbjct: 17 LWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQTY 76
Query: 85 N----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF Y S
Sbjct: 77 NGTQMPGTEHTFRLNWASFSSGERRPDPGSDHSIFVGDLAPDVTDYLLQETFRVNYSSVR 136
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 171
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F D + R
Sbjct: 106 SDHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNR 165
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 166 AMTEMNG---VYC 175
>gi|326524289|dbj|BAK00528.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 429
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 24/167 (14%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN---------KTKGFGFVSFKDPQ 75
++ G++ VT+ LL F S K++R ++++ + ++ Q
Sbjct: 63 VYVGNIHVQVTEALLREVFQSAGSVDGCKLIRKEKSSYGFVDYYERGSAALAILTLNGKQ 122
Query: 76 DF---IRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDK 123
F IR N ++ D F +F GDL +VTD L FS Y P+ A+V+ D+
Sbjct: 123 IFGQPIRVNWAYASGQREDTTDHFHIFVGDLSPEVTDSALFAFFSAYSPNCSDARVMWDQ 182
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
+T +++G+GFVSF++ QD A +N+ ++G+ + R + KG
Sbjct: 183 KTGRSRGYGFVSFRNQQD---AQSAINDLNGQWLGNRQIRCNWATKG 226
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 18 EDEND-FRLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
ED D F +F GDL +VTD L FS Y P+ A+V+ D++T +++G+GFVSF++ Q
Sbjct: 140 EDTTDHFHIFVGDLSPEVTDSALFAFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQ 199
Query: 76 DFIRANKEMNDDF 88
D A ++N +
Sbjct: 200 DAQSAINDLNGQW 212
>gi|392575524|gb|EIW68657.1| hypothetical protein TREMEDRAFT_71869 [Tremella mesenterica DSM
1558]
Length = 389
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 3 GLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
GL PG E L+ G+L VTD +L F+ + AK+++D R +
Sbjct: 11 GLTPG-------NHAEAPKKPHLYVGNLSPRVTDYMLTEIFAVAGPVVNAKIIQD-RNFQ 62
Query: 63 TKGF--GFVSFKDPQDF----------------IRANKE-MNDDFRLFCGDLGNDVTDEL 103
GF GFV + D + ++ NKE +F GDL +V D++
Sbjct: 63 HAGFNYGFVEYIDMRSAEQAIQTLNGRKIFDAEVKQNKEDTQHHHHVFVGDLSPEVNDDV 122
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L + F + S +A+V+ D + K++G+GF+SF+ +D +A MN
Sbjct: 123 LAKAFGAFGSMSEARVMWDMNSGKSRGYGFLSFRKREDAEQAINTMN 169
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 13 IKKTCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+K+ ED ++ +F GDL +V D++L + F + S +A+V+ D + K++G+GF+SF
Sbjct: 96 VKQNKEDTQHHHHVFVGDLSPEVNDDVLAKAFGAFGSMSEARVMWDMNSGKSRGYGFLSF 155
Query: 72 KDPQDFIRANKEMNDDF 88
+ +D +A MN ++
Sbjct: 156 RKREDAEQAINTMNGEW 172
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 64 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 121
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 122 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 181
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 182 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 215
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 214
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 215 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 274
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 275 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 317
>gi|342887592|gb|EGU87074.1| hypothetical protein FOXB_02468 [Fusarium oxysporum Fo5176]
Length = 541
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P P + K E D ++F G L + TD+ L FS++ ++ V+RD T +++G
Sbjct: 103 PTPPYGTVHKASAKE-DGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSSTGRSRG 161
Query: 66 FGFVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIR 106
FGF++FKD + D RA E ++F G + + TD+
Sbjct: 162 FGFLTFKDAKTVNIVMVKEHFLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKE 221
Query: 107 TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
F+++ + A ++ DK T + +GFGFV+F++
Sbjct: 222 YFAQFGRVVDATLMMDKDTGRPRGFGFVTFEN 253
>gi|238005936|gb|ACR34003.1| unknown [Zea mays]
gi|414865083|tpg|DAA43640.1| TPA: RNA-binding post-transcriptional regulator csx1 [Zea mays]
Length = 415
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K T+ +G+GF+ F + + +
Sbjct: 17 LWIGDLQYWTDENYLYSCFAHTGEVQSVKIIRNKVTSLPEGYGFIEFVSHEAAEKILQTY 76
Query: 85 N----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF Y S
Sbjct: 77 NGTQMPGTEHTFRLNWASFSSGERRPDPGSDHSIFVGDLAPDVTDYLLQETFRVNYSSVR 136
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 137 GAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMN 171
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F D + R
Sbjct: 106 SDHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKNR 165
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 166 AMTEMNG---VYC 175
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + R +++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERVSEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 87
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 147
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 148 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 181
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 241 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 283
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 43/170 (25%)
Query: 21 NDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N+F ++ + G+D+ DE L FSKY L KV+RD + K+KGFGFVSF + +
Sbjct: 187 NEFTNVYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDS-SGKSKGFGFVSFDSHEAAKK 245
Query: 80 ANKEMN---------------------------------DDFR------LFCGDLGNDVT 100
A +EMN + FR L+ +L +
Sbjct: 246 AVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETID 305
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DE L R FS + S + KV++++ ++KGFG + F P++ +A EMN
Sbjct: 306 DEKLRREFSSFGSISRVKVMQEE--GRSKGFGLICFSSPEEATKAMTEMN 353
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 36/173 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + L +KV+ D + ++G+ FV F++ RA +EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEM 157
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N D RLF G + G+D+ DE L FSKY L
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQNKANEFTNVYIKNFGDDMDDERLKEVFSKYGKTL 217
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
KV+RD + K+KGFGFVSF + +A +EMN LFVG + ++
Sbjct: 218 SVKVMRDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKA 269
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL + FS L ++ RD T ++ G+ +V+F D +A M
Sbjct: 12 LYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L FS + L +KV+
Sbjct: 72 NFDLIKGKSIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D + ++G+ FV F++ RA +EMN + LFVG K R
Sbjct: 132 DDQG--SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNR 175
>gi|302307303|ref|NP_983936.2| ADL160Wp [Ashbya gossypii ATCC 10895]
gi|299788936|gb|AAS51760.2| ADL160Wp [Ashbya gossypii ATCC 10895]
gi|374107149|gb|AEY96057.1| FADL160Wp [Ashbya gossypii FDAG1]
Length = 526
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + T++ L FSKY + + K++RD T +++GFGF+SF D
Sbjct: 164 KMFIGGLNWETTEDNLREYFSKYGNVTEVKIMRDGTTGRSRGFGFLSFADASSVDEVVKT 223
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA +E + ++F G +G DV + FS++ S + A+++ DK
Sbjct: 224 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKD 283
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 284 TGRSRGFGFITYDSP 298
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E + ++F G +G DV + FS++ S + A+++ DK T +++GFGF+++ P
Sbjct: 242 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDSP 298
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L +D+ DE L
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNLDDDIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + +++GFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSRGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ + +V+F+ P+D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFEKHEDAQKAVDEMN 252
>gi|115532850|ref|NP_001040945.1| Protein HRP-1, isoform d [Caenorhabditis elegans]
gi|351063093|emb|CCD71137.1| Protein HRP-1, isoform d [Caenorhabditis elegans]
Length = 347
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK--- 72
+ E EN ++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKT 75
Query: 73 ------------------DPQDFI-RANKEMNDDF----RLFCGDLGNDVTDELLIRTFS 109
DP+ + R +K ++ RL+ + D T+++L F+
Sbjct: 76 EVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFT 135
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
KY + K++++ DK T K +GFGFV+F D
Sbjct: 136 KYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F + A
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA--- 80
Query: 149 MNEFPHLFVG 158
M + PH+ G
Sbjct: 81 MKQRPHIIDG 90
>gi|388511131|gb|AFK43627.1| unknown [Lotus japonicus]
Length = 167
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 28/140 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-------- 76
++ G++ VTD LL F+ + K++R ++++ +GFV + D
Sbjct: 17 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 72
Query: 77 ---------------FIRANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
+ R+ +E + F +F GDL +VTD L FS YPS A+V+
Sbjct: 73 NGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVM 132
Query: 121 RDKRTNKTKGFGFVSFKDPQ 140
D++T +++GFGFVSF++ Q
Sbjct: 133 WDQQTGRSRGFGFVSFRNQQ 152
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
+ F +F GDL +VTD L FS YPS A+V+ D++T +++GFGFVSF++ Q
Sbjct: 95 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQ 152
>gi|25145229|ref|NP_500326.2| Protein HRP-1, isoform a [Caenorhabditis elegans]
gi|74965787|sp|Q22037.1|ROA1_CAEEL RecName: Full=Heterogeneous nuclear ribonucleoprotein A1;
Short=hnRNP A1
gi|217300|dbj|BAA01645.1| hnRNP like protein [Caenorhabditis elegans]
gi|351063090|emb|CCD71134.1| Protein HRP-1, isoform a [Caenorhabditis elegans]
Length = 346
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK--- 72
+ E EN ++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKT 75
Query: 73 ------------------DPQDFI-RANKEMNDDF----RLFCGDLGNDVTDELLIRTFS 109
DP+ + R +K ++ RL+ + D T+++L F+
Sbjct: 76 EVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFT 135
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
KY + K++++ DK T K +GFGFV+F D
Sbjct: 136 KYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F + A
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA--- 80
Query: 149 MNEFPHLFVG 158
M + PH+ G
Sbjct: 81 MKQRPHIIDG 90
>gi|354503925|ref|XP_003514030.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42-like,
partial [Cricetulus griseus]
Length = 622
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIR 79
NDFR++ GN+V D +L FS +PSFLKAKV+++KRT KTK +GFVSFK +++
Sbjct: 522 NDFRIW----GNEVNDVILACAFSHFPSFLKAKVIQEKRTGKTKSYGFVSFKALVSNYVP 577
Query: 80 ANKEMN 85
A E+N
Sbjct: 578 ATGEVN 583
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 5/66 (7%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIR 144
+DFR++ GN+V D +L FS +PSFLKAKV+++KRT KTK +GFVSFK +++
Sbjct: 522 NDFRIW----GNEVNDVILACAFSHFPSFLKAKVIQEKRTGKTKSYGFVSFKALVSNYVP 577
Query: 145 ANKEMN 150
A E+N
Sbjct: 578 ATGEVN 583
>gi|341903554|gb|EGT59489.1| CBN-TIAR-3 protein [Caenorhabditis brenneri]
Length = 417
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 43/165 (26%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL DV+++LL TF KY +AKV+RD +T K+KG+GFVSF + Q+ A
Sbjct: 192 FHVFVGDLSKDVSNDLLKSTFQKYGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIA 251
Query: 83 EMN-------------------------------------DDFRLFCGDLGNDVTDELLI 105
MN D+ ++ G++ TD L
Sbjct: 252 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+FS Y + +V + +R + FV + + +A EMN
Sbjct: 312 DSFSTYGDIAEVRVFKTQR------YAFVRYDKKECATKAIMEMN 350
>gi|451850144|gb|EMD63446.1| hypothetical protein COCSADRAFT_160854 [Cochliobolus sativus
ND90Pr]
Length = 569
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 3 GLRPGPISSWIKKTCEDEN--------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 54
G G S+ ED+N D ++F G L + T++ L FS++ + V
Sbjct: 79 GFNAGGEQSFDNAPAEDDNYGPINVKEDGKMFIGGLNWETTEDSLKGYFSQFGEVSECTV 138
Query: 55 VRDKRTNKTKGFGFVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDL 95
+RD T +++GFGF++FKDP+ D RA +E ++F G +
Sbjct: 139 MRDSATGRSRGFGFLTFKDPKCVNIVMVKEHYLDGKIIDPKRAIPREEQERTSKIFVGGV 198
Query: 96 GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ T+E F ++ + A ++ DK T + +GFGFV+F
Sbjct: 199 SQEATEEDFTNFFKQFGRVVDATLMMDKETGRPRGFGFVTF 239
Score = 46.6 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + T++ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 103 VKEDGKMFIGGLNWETTEDSLKGYFSQFGEVSECTVMRDSATGRSRGFGFLTFKDPK 159
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 154
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 155 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 188
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 248 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 290
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 87
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 147
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 148 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 181
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 241 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 283
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 42 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 99
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 100 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 159
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 160 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 193
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 192
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 193 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 252
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 253 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 295
>gi|358059025|dbj|GAA95206.1| hypothetical protein E5Q_01862 [Mixia osmundae IAM 14324]
Length = 352
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG--FGFVSFKDPQDFIRA- 80
L+ G++ VT+ +L F+ + K++ D RT + G +GFV F Q +A
Sbjct: 13 HLYIGNISPRVTEYMLQEVFALAGPVQQVKIIPD-RTFQHGGLNYGFVEFYTMQGAEQAL 71
Query: 81 ------------------------NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 116
+++ + F +FCGDL +VTD++L +TFS + S
Sbjct: 72 QTLAGRKLFDTEMKVNWAYQNQTAKEDVTNHFHVFCGDLSPEVTDDILQKTFSAFGSLSD 131
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A+V+ D + K++G+GF++F+D D A MN
Sbjct: 132 ARVMWDMASGKSRGYGFLAFRDRADAEAAINAMN 165
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +FCGDL +VTD++L +TFS + S A+V+ D + K++G+GF++F+D D A
Sbjct: 101 NHFHVFCGDLSPEVTDDILQKTFSAFGSLSDARVMWDMASGKSRGYGFLAFRDRADAEAA 160
Query: 81 NKEMNDDF 88
MN ++
Sbjct: 161 INAMNGEW 168
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 93
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 94 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 153
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 154 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 187
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 186
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 187 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 246
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 247 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 289
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 87
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 147
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 148 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 181
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 241 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 283
>gi|336263120|ref|XP_003346341.1| hypothetical protein SMAC_07818 [Sordaria macrospora k-hell]
gi|380091669|emb|CCC10801.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 532
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
+F G L + TD+ L FS+Y ++ V+RD T +++GFGF++FKDP+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQYGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNVVMVKE 60
Query: 76 --------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
D RA E ++F G + + TD F+++ + A ++ DK T
Sbjct: 61 HYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDT 120
Query: 126 NKTKGFGFVSFK 137
+ +GFGFV+F+
Sbjct: 121 GRPRGFGFVTFE 132
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+F G L + TD+ L FS+Y ++ V+RD T +++GFGF++FKDP+
Sbjct: 1 MFIGGLNWETTDQSLRDYFSQYGEVVECTVMRDGATGRSRGFGFLTFKDPK 51
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 78 EQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 132
>gi|320588554|gb|EFX01022.1| heterogeneous nuclear ribonucleoprotein hrp1 [Grosmannia clavigera
kw1407]
Length = 524
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + TD+ L FS++ L+ V+RD T +++GFGF++FKDP+
Sbjct: 42 KMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDSATGRSRGFGFLTFKDPKTVNIVMVK 101
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA E ++F G + + TD+ F+++ + A ++ DK
Sbjct: 102 EHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLMMDKD 161
Query: 125 TNKTKGFGFVSFK 137
T + +GFGF++F+
Sbjct: 162 TGRPRGFGFLTFE 174
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++F G L + TD+ L FS++ L+ V+RD T +++GFGF++FKDP+
Sbjct: 42 KMFIGGLNWETTDQSLRDYFSQFGEVLECTVMRDSATGRSRGFGFLTFKDPK 93
Score = 38.9 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD+ F+++ + A ++ DK T + +GFGF++F+
Sbjct: 120 EQEKTSKIFVGGVSQETTDQEFKEYFAQFGRVVDATLMMDKDTGRPRGFGFLTFE 174
>gi|414886902|tpg|DAA62916.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 308
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELL-IRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSF----KDPQDFI 78
L+ GDL + + + L F+ + + K++R+K+T ++G+GF+ F +
Sbjct: 116 LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLM 175
Query: 79 RANKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
N +M D +F GDL +DVTD +L F +KYPS
Sbjct: 176 NFNGQMMPNVEMTFKLNWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPS 235
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A VV D+ T KGFGFV F D + RA EMN
Sbjct: 236 VRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMN 272
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 11 SWIKKTCEDE-----NDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTK 64
+W + D+ +D +F GDL +DVTD +L F +KYPS A VV D+ T K
Sbjct: 192 NWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPK 251
Query: 65 GFGFVSFKDPQDFIRANKEMN 85
GFGFV F D + RA EMN
Sbjct: 252 GFGFVRFGDLNEQARAMTEMN 272
>gi|168027694|ref|XP_001766364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682273|gb|EDQ68692.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 405
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ + VT+ LL F+ K++R +++ +GFV + D + + A +
Sbjct: 23 VYVGNIHSRVTEGLLAEVFASLGPLEGCKLIRKDKSS----YGFVDYFDHRSAVAALSTL 78
Query: 85 ND-------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 119
N F +F GDL +VTD L F YPS A+V
Sbjct: 79 NGRQMFGQSIKVNWAYASGQREDTTAGHFNVFVGDLSAEVTDATLFAAFCIYPSCSDARV 138
Query: 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+ D+R+ +++GFGFVSF+ Q+ + EM
Sbjct: 139 MWDQRSGRSRGFGFVSFRSQQEAESSISEM 168
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
F +F GDL +VTD L F YPS A+V+ D+R+ +++GFGFVSF+ Q+ +
Sbjct: 105 GHFNVFVGDLSAEVTDATLFAAFCIYPSCSDARVMWDQRSGRSRGFGFVSFRSQQEAESS 164
Query: 81 NKEMNDDF 88
EM +
Sbjct: 165 ISEMTGKW 172
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L KV+ D + K+KGFGFVSF + +A +EM
Sbjct: 469 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 527
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N +L+ +L + + DE L
Sbjct: 528 NGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVVKLYVKNLDDTIDDEKLR 587
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S + KV++++ ++KGFG + F P+D ++A EMN
Sbjct: 588 KEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDALKAMTEMN 630
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL R FS L ++ RD+ T ++ G+ +V+F D +A M
Sbjct: 289 LYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYAYVNFLHLADAQKALDTM 348
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L FS + L +KV+
Sbjct: 349 NFDVIQGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMS 408
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D + +KG+ FV F++ RA +EMN + +FVG K+R
Sbjct: 409 DDQ--GSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSR 452
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + L +KV+ D + +KG+ FV F++ RA +EM
Sbjct: 377 VFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQ--GSKGYAFVHFQNQSAADRAIEEM 434
Query: 85 NDDF----RLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N ++F G + G D+ DE L FSKY L
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 494
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF + +A +EMN
Sbjct: 495 SVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMN 528
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ +L + + DE L + FS + S + KV++++ ++KGFG + F P+D ++A E
Sbjct: 571 KLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDALKAMTE 628
Query: 84 MN 85
MN
Sbjct: 629 MN 630
>gi|400601150|gb|EJP68793.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 522
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P+ + K + +D D ++F G L + TD+ L FS++ ++ V+RD T +++GFG
Sbjct: 103 PLGTVHKASAKD--DGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFG 160
Query: 68 FVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTF 108
F++FKD + D RA E ++F G + D TD+ F
Sbjct: 161 FLTFKDAKTVNIVMVKEHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQDTTDQEFRDFF 220
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
+++ + A ++ DK T + +GFGFV+F+
Sbjct: 221 AQFGRVIDATLMMDKDTGRPRGFGFVTFE 249
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
DD ++F G L + TD+ L FS++ ++ V+RD T +++GFGF++FKD +
Sbjct: 114 DDGKMFIGGLNWETTDQSLRDYFSQFGEVVECTVMRDSNTGRSRGFGFLTFKDAK 168
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 19/145 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P+D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDTM 72
Query: 85 NDDFRLFCGDLGNDVTDELLIRTF--SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
N DV + +R + PS K+ VV D+ N +KG+GFV F+ +
Sbjct: 73 N-----------FDVINGKSVRIMWSQRDPSLRKSGVVCDE--NGSKGYGFVHFETQEAA 119
Query: 143 IRANKEMNEF----PHLFVGDLKTR 163
RA ++MN +FVG K+R
Sbjct: 120 ERAIEKMNGMLLNDQKVFVGRFKSR 144
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+R K+KGFGFVSF+ +D +A E+
Sbjct: 161 VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDER-GKSKGFGFVSFERGEDAQKAVDEL 219
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ L + + DE L
Sbjct: 220 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDERLR 279
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 280 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 322
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 32/133 (24%)
Query: 47 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----DDFRLFCG--------- 93
PS K+ VV D+ N +KG+GFV F+ + RA ++MN +D ++F G
Sbjct: 91 PSLRKSGVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKERE 148
Query: 94 ----------------DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
+ G D+ DE L F K+ L KV+ D+R K+KGFGFVSF+
Sbjct: 149 AELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDER-GKSKGFGFVSFE 207
Query: 138 DPQDFIRANKEMN 150
+D +A E+N
Sbjct: 208 RGEDAQKAVDELN 220
>gi|50305631|ref|XP_452776.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641909|emb|CAH01627.1| KLLA0C12925p [Kluyveromyces lactis]
Length = 570
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 21/136 (15%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK----------- 72
++F G L + T+E L FSKY + + K+++D T +++GFGF++F+
Sbjct: 187 KMFIGGLNWETTEEGLRDYFSKYGAVAEVKIMKDTATGRSRGFGFLTFENASSVDEVVKT 246
Query: 73 ---------DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
DP+ I +E + ++F G +G DV + FS++ S + A+++ DK
Sbjct: 247 QHILDGKVIDPKRAI-PREEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDK 305
Query: 124 RTNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 306 DTGRSRGFGFITYDTP 321
Score = 42.0 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E + ++F G +G DV + FS++ S + A+++ DK T +++GFGF+++ P
Sbjct: 265 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGSIIDAQLMLDKDTGRSRGFGFITYDTP 321
>gi|384250449|gb|EIE23928.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 358
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 24/151 (15%)
Query: 10 SSWIKKTCEDEN-DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
++ I + +D N D ++ G+L +++EL+ F + + + +D+ T++ +G+GF
Sbjct: 15 ANLIGQHAQDRNQDATVYVGNLDVQLSEELVWELFVQSGPVVNVYLPKDRVTSQHQGYGF 74
Query: 69 VSFKDPQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIR 106
V FK D IR NK D LF G++ DV ++LL
Sbjct: 75 VEFKSEDDADYAIKILNMIKVYGKPIRVNKASQDKKTQDVGANLFIGNIDPDVDEKLLYD 134
Query: 107 TFSKYPSFLKA-KVVRDKRTNKTKGFGFVSF 136
TFS + ++ K++RD T TKGFGFVS+
Sbjct: 135 TFSAFGMIIQTPKIMRDPETGATKGFGFVSY 165
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
LF G++ DV ++LL TFS + ++ K++RD T TKGFGFVS+ + A +
Sbjct: 118 LFIGNIDPDVDEKLLYDTFSAFGMIIQTPKIMRDPETGATKGFGFVSYDSFEASDAAIEA 177
Query: 84 MNDDF 88
MN F
Sbjct: 178 MNGQF 182
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
++ N D ++ G+L +++EL+ F + + + +D+ T++ +G+GFV FK D
Sbjct: 23 QDRNQDATVYVGNLDVQLSEELVWELFVQSGPVVNVYLPKDRVTSQHQGYGFVEFKSEDD 82
Query: 142 FIRANKEMN 150
A K +N
Sbjct: 83 ADYAIKILN 91
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 28/168 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 20 LYVGDLHPDVTEAMLFEKFSSAGPVLSIRVCRDAITRRSLGYAYVNFQQPADAERALDTM 79
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + + L KV
Sbjct: 80 NFDMMYGKPIRIMWSQRDPSMRRSGAGNIFIKNLDKSIDNKAIYDTFSMFGNILSCKVAN 139
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRSS 165
D+ N +KG+GFV F+ + +A +++N E ++VG + R +
Sbjct: 140 DEELN-SKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRMA 186
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + +++ E L + F K+ A V+ D K+KGFGFV+F++P+D +A EM
Sbjct: 201 VYIKNFADELDKEALEKLFFKFGKITSAAVMVDA-DGKSKGFGFVAFENPEDAEKAVTEM 259
Query: 85 ND-----------------------------------------DFRLFCGDLGNDVTDEL 103
++ L+ +L + V D++
Sbjct: 260 HEYELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERMQRYQGVNLYVKNLDDTVNDDI 319
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L + F Y AKV+ D ++KGFGFV F+ P + +A EMN
Sbjct: 320 LKQNFEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEMN 365
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN--- 81
+F +L + ++ + TFS + + L KV D+ N +KG+GFV F+ + +A
Sbjct: 108 IFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELN-SKGYGFVHFETEESAQKAIEKV 166
Query: 82 ----------------------KEMNDDFRLFCGDLGNDVTDEL----LIRTFSKYPSFL 115
+EM + R F + DEL L + F K+
Sbjct: 167 NGMLLEGKKVYVGKFQPRMARLREMGETTRRFTNVYIKNFADELDKEALEKLFFKFGKIT 226
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
A V+ D K+KGFGFV+F++P+D +A EM+E+
Sbjct: 227 SAAVMVDA-DGKSKGFGFVAFENPEDAEKAVTEMHEY 262
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L + V D++L + F Y AKV+ D ++KGFGFV F+ P + +A EM
Sbjct: 306 LYVKNLDDTVNDDILKQNFEAYGKITSAKVMCDD-NGRSKGFGFVCFEKPDEATKAVTEM 364
Query: 85 NDDFRLFC 92
N ++ C
Sbjct: 365 NG--KMMC 370
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D + K++GFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKEIFDKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K++GFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEMN 252
>gi|147781769|emb|CAN74486.1| hypothetical protein VITISV_029928 [Vitis vinifera]
Length = 434
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DVTD LL TF+ +YPS AKVV D T ++KG+GFV F D + R
Sbjct: 192 SDLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSR 251
Query: 80 ANKEMNDDFRLFC 92
A EMN ++C
Sbjct: 252 AMNEMNG---IYC 261
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D +F GDL +DVTD LL TF+ +YPS AKVV D T ++KG+GFV F D + RA
Sbjct: 193 DLSIFVGDLASDVTDALLQETFATRYPSVKGAKVVTDSNTGRSKGYGFVRFGDENERSRA 252
Query: 146 NKEMN 150
EMN
Sbjct: 253 MNEMN 257
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 145
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L FSKY L
Sbjct: 146 NGMLLNDRKVFVGRFKSRKEREAELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPAL 205
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+ D + K+KGFGFVSF+ +D +A +MN
Sbjct: 206 SIRVMTDD-SGKSKGFGFVSFERHEDAQKAVDDMN 239
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L +V+ D + K+KGFGFVSF+ +D +A +M
Sbjct: 180 VYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQKAVDDM 238
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 239 NGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 298
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 299 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 341
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 29/148 (19%)
Query: 43 FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF-------------- 88
FS L +V RD T ++ G+ +V+F+ P D RA MN D
Sbjct: 18 FSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIMWSQRD 77
Query: 89 ---------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+
Sbjct: 78 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETH 135
Query: 140 QDFIRANKEMNEF----PHLFVGDLKTR 163
+ RA ++MN +FVG K+R
Sbjct: 136 EAAERAIEKMNGMLLNDRKVFVGRFKSR 163
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 204
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 205 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 264
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 265 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 298
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 297
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 298 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 357
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 358 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 400
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 87
Query: 85 N 85
N
Sbjct: 88 N 88
Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 87
Query: 150 N 150
N
Sbjct: 88 N 88
>gi|268578407|ref|XP_002644186.1| Hypothetical protein CBG17168 [Caenorhabditis briggsae]
Length = 244
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 43/165 (26%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD------ 76
F +F GDL DV++ELL TF K+ +AKV+RD +T K+KG+GFVSF + Q+
Sbjct: 5 FHVFVGDLSKDVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAENAIS 64
Query: 77 ----------------FIRANKEMN---------------DDFRLFCGDLGNDVTDELLI 105
R N E N D+ ++ G++ TD L
Sbjct: 65 GMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISPQTTDVDLR 124
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+FS Y + +V + +R + FV ++ + +A EMN
Sbjct: 125 DSFSTYGDIAEVRVFKTQR------YAFVRYEKKECATKAIMEMN 163
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
++ F +F GDL DV++ELL TF K+ +AKV+RD +T K+KG+GFVSF + Q+
Sbjct: 2 SEHFHVFVGDLSKDVSNELLKSTFQKFGEVSEAKVIRDAQTQKSKGYGFVSFPNKQNAEN 61
Query: 145 ANKEMN 150
A MN
Sbjct: 62 AISGMN 67
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 124 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 167
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D+ L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 242
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 243 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 302
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 303 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 345
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 92 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 149
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D+ L FS++ L
Sbjct: 150 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDDNLKELFSQFGKTL 209
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 210 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 243
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 133
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 134 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 193
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 194 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 227
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 227 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 286
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 287 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 329
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 38 LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF--------- 88
+L FS L +V RD T ++ G+ +V+F+ P D RA MN D
Sbjct: 1 MLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 60
Query: 89 --------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV
Sbjct: 61 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFV 118
Query: 135 SFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
F+ + RA ++MN +FVG K+R
Sbjct: 119 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 151
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR 176
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D+ L FS + + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T +++GFGFV++ + ++ +A EMN
Sbjct: 219 SVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D T +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+++ DE L F KY L KV+ D + K++GFGFVSF+ +D +A +E+
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDS-SGKSRGFGFVSFEKHEDANKAVEEI 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+++ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDEMEDEQLKEMFEKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K++GFGFVSF+ +D +A +E+N
Sbjct: 219 SVKVMTDS-SGKSRGFGFVSFEKHEDANKAVEEIN 252
>gi|50725189|dbj|BAD33940.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|51535291|dbj|BAD38554.1| putative nucleic acid binding protein [Oryza sativa Japonica Group]
Length = 316
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 29/144 (20%)
Query: 36 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---------------------KDP 74
+ L F + KV+R+K+T +++G+GFV F P
Sbjct: 3 ENYLHSCFGYTGEVVAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQP 62
Query: 75 QDFIRANKEMND-------DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTN 126
A+ M D D +F GDL +DV D L+ TFSK Y S AKVV D T
Sbjct: 63 FRINWASFSMGDRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTG 122
Query: 127 KTKGFGFVSFKDPQDFIRANKEMN 150
++KG+GFV F D + A EMN
Sbjct: 123 RSKGYGFVRFGDDNEKTHAMTEMN 146
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 46/165 (27%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DV D L+ TFSK Y S AKVV D T ++KG+GFV F D +
Sbjct: 81 SDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTH 140
Query: 80 ANKEMNDDF------------------------------------RLFCGDLGNDVTDEL 103
A EMN + +F G L +V+++
Sbjct: 141 AMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDD 200
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA 145
L +TFS+Y K+ K+ GFV F K+ +D ++
Sbjct: 201 LRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQG 239
>gi|213408421|ref|XP_002174981.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
gi|212003028|gb|EEB08688.1| DAZ-associated protein [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P + +++ + D ++F G L + TDE L F ++ L V+RD T +++GFG
Sbjct: 105 PAAQEEQQSPFNREDGKMFIGGLNWETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFG 164
Query: 68 FVSFKDPQ-----------------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTF 108
F++FKDP+ D RA +E ++F G + D T+E F
Sbjct: 165 FLTFKDPKCVQVVMSKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPADCTEEEFRDFF 224
Query: 109 SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+++ L A ++ DK T + +GFGFV+F++
Sbjct: 225 NQFGRVLDATLMMDKDTGRPRGFGFVTFEN 254
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TDE L F ++ L V+RD T +++GFGF++FKDP+
Sbjct: 118 EDGKMFIGGLNWETTDESLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKDPK 172
>gi|149241445|ref|XP_001526315.1| hypothetical protein LELG_02873 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450438|gb|EDK44694.1| hypothetical protein LELG_02873 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 548
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L D T+E L F KY + +++D T +++GFGF++FKDP
Sbjct: 205 KMFIGGLNWDTTEEGLAEHFRKYGEVVDYTIMKDNATGRSRGFGFLTFKDPASVDAVIKE 264
Query: 76 ---------DFIRANKEMNDDF--RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA + D ++F G + VT+ FSK+ S + +++ DK
Sbjct: 265 EHILDGKLIDPKRAIAREDQDRVGKIFVGGIDPMVTEREFNEFFSKFGSIIDCQLMIDKD 324
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGF+++ P
Sbjct: 325 TGRSRGFGFITYDSP 339
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
D ++F G L D T+E L F KY + +++D T +++GFGF++FKDP
Sbjct: 202 DSGKMFIGGLNWDTTEEGLAEHFRKYGEVVDYTIMKDNATGRSRGFGFLTFKDP 255
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT++ L R FS L ++ RD T ++ G+ +V+F D RA M
Sbjct: 150 LYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYVNFLRLADAQRALDTM 209
Query: 85 NDD------FRL-----------------FCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D RL F +L V D+ L FS + L +KVV
Sbjct: 210 NFDVLRGRPLRLMWSQRDAHLRKSGVGNVFIKNLDRSVDDKALFERFSAFGKILSSKVVS 269
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP----HLFVGDLKTRSS 165
D+R ++G+ FV F++ RA + MN LFVG ++R +
Sbjct: 270 DER--GSRGYAFVHFQEQSAADRAIEHMNGAQLRGCRLFVGRFQSRQA 315
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 36/173 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L V D+ L FS + L +KVV D+R ++G+ FV F++ RA + M
Sbjct: 238 VFIKNLDRSVDDKALFERFSAFGKILSSKVVSDER--GSRGYAFVHFQEQSAADRAIEHM 295
Query: 85 ND----DFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N RLF G + G + D L FS+Y L
Sbjct: 296 NGAQLRGCRLFVGRFQSRQAREAELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTL 355
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
KV+ D + +++GFGFVSF+ + RA + +N + LFVG + ++
Sbjct: 356 SVKVMTDA-SGRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKA 407
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ + G + D L FS+Y L KV+ D + +++GFGFVSF+ + RA + +
Sbjct: 330 LYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDA-SGRSRGFGFVSFESHEAARRAVEAL 388
Query: 85 N---------------------------------DDFR------LFCGDLGNDVTDELLI 105
N D R L+ +L + V ++ L
Sbjct: 389 NGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLR 448
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + + + K++R++ ++KGFG + F + RA EMN
Sbjct: 449 REFSGFGAVSRVKIMREE--GRSKGFGLICFSSADEAARALAEMN 491
Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ +L + V ++ L R FS + + + K++R++ ++KGFG + F + RA E
Sbjct: 432 KLYVKNLDDAVDEDRLRREFSGFGAVSRVKIMREE--GRSKGFGLICFSSADEAARALAE 489
Query: 84 MN 85
MN
Sbjct: 490 MN 491
>gi|414886904|tpg|DAA62918.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 484
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELL-IRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSF----KDPQDFI 78
L+ GDL + + + L F+ + + K++R+K+T ++G+GF+ F +
Sbjct: 116 LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLM 175
Query: 79 RANKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
N +M D +F GDL +DVTD +L F +KYPS
Sbjct: 176 NFNGQMMPNVEMTFKLNWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPS 235
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A VV D+ T KGFGFV F D + RA EMN
Sbjct: 236 VRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMN 272
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 11 SWIKKTCEDE-----NDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTK 64
+W + D+ +D +F GDL +DVTD +L F +KYPS A VV D+ T K
Sbjct: 192 NWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPK 251
Query: 65 GFGFVSFKDPQDFIRANKEMN 85
GFGFV F D + RA EMN
Sbjct: 252 GFGFVRFGDLNEQARAMTEMN 272
>gi|168027692|ref|XP_001766363.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682272|gb|EDQ68691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP---------- 74
++ G++ VT+ LL FS K++R ++++ +GFV + D
Sbjct: 58 VYVGNIHTKVTEALLAEVFSNIGPLEGCKLIRKEKSS----YGFVDYLDHIYAAVALTTL 113
Query: 75 -----------QDFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D + +F GDL +VTD L F YPS A+V+
Sbjct: 114 NGRLIFGQPIKVNWAYASGQREDTTGHYNVFVGDLSPEVTDATLFAAFCVYPSCSDARVM 173
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D+R+ +++GFGFVSF+ Q+ A EM
Sbjct: 174 WDQRSGRSRGFGFVSFRSQQEAENAISEM 202
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L F YPS A+V+ D+R+ +++GFGF
Sbjct: 127 WAYASGQREDTTGHYNVFVGDLSPEVTDATLFAAFCVYPSCSDARVMWDQRSGRSRGFGF 186
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF+ Q+ A EM +
Sbjct: 187 VSFRSQQEAENAISEMTGKW 206
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 43/166 (25%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD----- 76
F +F GDL DV++ELL TF+K+ +AKV+RD +T K+KG+GFVSF + Q+
Sbjct: 224 HFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAI 283
Query: 77 -----------------FIRANKEMN---------------DDFRLFCGDLGNDVTDELL 104
R N E N D+ ++ G++ TD L
Sbjct: 284 AGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADL 343
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y + ++ + +R + FV ++ + +A EMN
Sbjct: 344 RDLFSTYGDIAEVRIFKTQR------YAFVRYEKKECATKAIMEMN 383
>gi|190347776|gb|EDK40115.2| hypothetical protein PGUG_04213 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 23/145 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
+F G L D T++ L+ FSK+ + ++RD T K++GFGF++FK
Sbjct: 1 MFIGGLNWDTTEQGLVEYFSKFGEVVDHTIMRDSATGKSRGFGFLTFKDTKSVDAVIQGD 60
Query: 73 --------DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
DP+ I A +E + ++F G + V ++ FS++ S + A+++ DK
Sbjct: 61 HVLDGKLIDPKRAI-AREEQDKVGKIFVGGIDPMVNEKEFHDFFSQFGSIIDAQLMIDKD 119
Query: 125 TNKTKGFGFVSFKDPQ--DFIRANK 147
T +++GFGF++F P+ D + NK
Sbjct: 120 TGRSRGFGFITFDSPEAVDRVTVNK 144
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
++F G + V ++ FS++ S + A+++ DK T +++GFGF++F P+ D + N
Sbjct: 84 KIFVGGIDPMVNEKEFHDFFSQFGSIIDAQLMIDKDTGRSRGFGFITFDSPEAVDRVTVN 143
Query: 82 K 82
K
Sbjct: 144 K 144
>gi|302769522|ref|XP_002968180.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
gi|300163824|gb|EFJ30434.1| hypothetical protein SELMODRAFT_169811 [Selaginella moellendorffii]
Length = 296
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 26/148 (17%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
+D +LF L + T + L F ++ + V+ DK T K++GFGF++FK
Sbjct: 26 ASKDPAHRKLFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMD 85
Query: 76 DFIRANKE------------------------MNDDF--RLFCGDLGNDVTDELLIRTFS 109
RA KE ND +L+ G L + ++E L+ FS
Sbjct: 86 SAQRALKEPSKTIDGRITVCNLASVGTSGSGGTNDQAQRKLYIGGLSYETSNETLLNIFS 145
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
KY + V DK TNK++GF FV++K
Sbjct: 146 KYGEIEEGAVAYDKNTNKSRGFAFVTYK 173
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF L + T + L F ++ + V+ DK T K++GFGF++FK RA KE
Sbjct: 34 KLFVRGLAWETTSQDLREAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKE 93
>gi|222641726|gb|EEE69858.1| hypothetical protein OsJ_29658 [Oryza sativa Japonica Group]
Length = 310
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 50 LKAKVVRDKRTNKTKGFGFVSF---------------------KDPQDFIRANKEMND-- 86
+ KV+R+K+T +++G+GFV F P A+ M D
Sbjct: 11 VAIKVIRNKQTGQSEGYGFVEFYSHAAAEKVLEGFAGHIMPNTDQPFRINWASFSMGDRR 70
Query: 87 -----DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
D +F GDL +DV D L+ TFSK Y S AKVV D T ++KG+GFV F D
Sbjct: 71 SDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDN 130
Query: 141 DFIRANKEMN 150
+ A EMN
Sbjct: 131 EKTHAMTEMN 140
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 46/165 (27%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+D +F GDL +DV D L+ TFSK Y S AKVV D T ++KG+GFV F D +
Sbjct: 75 SDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFGDDNEKTH 134
Query: 80 ANKEMNDDF------------------------------------RLFCGDLGNDVTDEL 103
A EMN + +F G L +V+++
Sbjct: 135 AMTEMNGVYCSTRPMRIGPATPRKTSGTSGPTGSAARSDGDLTNTTVFVGGLDPNVSEDD 194
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF---KDPQDFIRA 145
L +TFS+Y K+ K+ GFV F K+ +D ++
Sbjct: 195 LRQTFSQYGEISSVKIPVGKQC------GFVQFVQRKNAEDALQG 233
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSR 176
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMN 252
>gi|344302744|gb|EGW33018.1| hypothetical protein SPAPADRAFT_60343 [Spathaspora passalidarum
NRRL Y-27907]
Length = 457
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 38/169 (22%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSF------- 71
+N F+L+ GDL ++ T+E + ++ + K++RDK G+ FV+F
Sbjct: 86 DNQFQLWMGDLDSNWTEEAIDYIWASLVEKPVSVKIIRDKLNPTKPGYCFVTFNNQKSVD 145
Query: 72 ----KDPQDFIRANK------------------------EMNDDFRLFCGDLGNDVTDEL 103
++ Q +NK + ++DF +F GDLG++V++ L
Sbjct: 146 LAMQRNGQPVPSSNKYFKLNYASGGGHGGGQSRHAASGGDSSNDFSMFVGDLGHEVSEAL 205
Query: 104 LIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L F+ KYP+ +K KV+ D T K+KGFGFV F + + RA +EMN
Sbjct: 206 LFNKFNHKYPNQIKHVKVIIDPTTKKSKGFGFVRFLNGEALNRALQEMN 254
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQ 75
+ NDF +F GDLG++V++ LL F+ KYP+ +K KV+ D T K+KGFGFV F + +
Sbjct: 185 DSSNDFSMFVGDLGHEVSEALLFNKFNHKYPNQIKHVKVIIDPTTKKSKGFGFVRFLNGE 244
Query: 76 DFIRANKEMN 85
RA +EMN
Sbjct: 245 ALNRALQEMN 254
>gi|147856810|emb|CAN81343.1| hypothetical protein VITISV_008697 [Vitis vinifera]
Length = 536
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 52/182 (28%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL +DV+D LL TF+ KYPS AKVV D T ++KG+GFV F D
Sbjct: 57 KRSDNGPDLSIFVGDLASDVSDSLLHETFAGKYPSVKAAKVVFDANTGRSKGYGFVRFGD 116
Query: 74 PQDFIRANKEMNDDF--------------------------------------------- 88
+ +A EMN +
Sbjct: 117 ENERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSHGGYASNGASVQSDGDSMNT 176
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F G L +V+DE L + FS+Y + K+ KG GFV F + + A ++
Sbjct: 177 TIFVGGLDPNVSDEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEDALQK 230
Query: 149 MN 150
+N
Sbjct: 231 LN 232
>gi|118350408|ref|XP_001008485.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila]
gi|89290252|gb|EAR88240.1| Splicing factor 3B subunit 4 [Tetrahymena thermophila SB210]
Length = 325
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
E +D L+ G L VT E+L FS+ + + RDK T + +G+GFV +K +D
Sbjct: 6 SERNSDATLYVGGLDQKVTQEVLWELFSQCGIVINVHLPRDKITGEHQGYGFVEYKTEED 65
Query: 77 F----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKYPSF 114
I+ NK D +F G+L VT+ L TFS +
Sbjct: 66 ADYAIKILHLIKLYGKPIKVNKASQDKRTQEVGANIFIGNLDPSVTEMQLQETFSTFGLI 125
Query: 115 LKAKVVRDKRTNKTKGFGFVSF 136
+ ++VRD N++KG+ F+S+
Sbjct: 126 IGRRIVRDSDNNQSKGYAFISY 147
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E N D L+ G L VT E+L FS+ + + RDK T + +G+GFV +K +D
Sbjct: 7 ERNSDATLYVGGLDQKVTQEVLWELFSQCGIVINVHLPRDKITGEHQGYGFVEYKTEED 65
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 13 IKKTCED----ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+ K +D E +F G+L VT+ L TFS + + ++VRD N++KG+ F
Sbjct: 85 VNKASQDKRTQEVGANIFIGNLDPSVTEMQLQETFSTFGLIIGRRIVRDSDNNQSKGYAF 144
Query: 69 VSFKDPQDFIRANKEMNDDF 88
+S+ + + A MN +
Sbjct: 145 ISYDNFESSDNAISAMNGQY 164
>gi|146415028|ref|XP_001483484.1| hypothetical protein PGUG_04213 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 23/145 (15%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
+F G L D T++ L+ FSK+ + ++RD T K++GFGF++FK
Sbjct: 1 MFIGGLNWDTTEQGLVEYFSKFGEVVDHTIMRDSATGKSRGFGFLTFKDTKSVDAVIQGD 60
Query: 73 --------DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
DP+ I A +E + ++F G + V ++ FS++ S + A+++ DK
Sbjct: 61 HVLDGKLIDPKRAI-AREEQDKVGKIFVGGIDPMVNEKEFHDFFSQFGSIIDAQLMIDKD 119
Query: 125 TNKTKGFGFVSFKDPQ--DFIRANK 147
T +++GFGF++F P+ D + NK
Sbjct: 120 TGRSRGFGFITFDSPEAVDRVTVNK 144
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
++F G + V ++ FS++ S + A+++ DK T +++GFGF++F P+ D + N
Sbjct: 84 KIFVGGIDPMVNEKEFHDFFSQFGSIIDAQLMIDKDTGRSRGFGFITFDSPEAVDRVTVN 143
Query: 82 K 82
K
Sbjct: 144 K 144
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMN 252
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA---- 80
L+ GDL +V+D L+ FS + S +V +D T K+ +G+V+F PQD IRA
Sbjct: 14 LYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELK 73
Query: 81 -NKEMND------------DFR------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +N D R LF +L + + L F KY + L +KVV
Sbjct: 74 NNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVM 133
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTRSSITLKG 170
+ K+KG+GFV F+ + A +++N L+VG +S L G
Sbjct: 134 SE-DGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPG 185
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 44/167 (26%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L DV++ L FS + + + +D +KGFGFV++ +P D RA + M
Sbjct: 193 LYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDN-IGMSKGFGFVNYDNPDDAKRAMEAM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N ++ ++ + V+DE L
Sbjct: 252 NGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
FS AK++RD + +KGFGFV F P++ ANK +N F
Sbjct: 312 DHFSACGIITSAKIMRDDK-GISKGFGFVCFSTPEE---ANKAVNTF 354
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 29/153 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF +L + + L F KY + L +KVV + K+KG+GFV F+ + A +++
Sbjct: 102 LFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSE-DGKSKGYGFVQFESEESSNVAIEKL 160
Query: 85 ND----DFRLFCG-----------------------DLGNDVTDELLIRTFSKYPSFLKA 117
N D +L+ G +L DV++ L FS + +
Sbjct: 161 NGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSL 220
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ +D +KGFGFV++ +P D RA + MN
Sbjct: 221 VIAKDN-IGMSKGFGFVNYDNPDDAKRAMEAMN 252
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + A + MN +FVG K+R
Sbjct: 133 DD--HGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSR 176
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV + L FS++ L KV+RD + ++GFGFV+F+ +D +A +M
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + A + M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV + L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKIL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ +D +A +MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMN 252
>gi|255576617|ref|XP_002529199.1| nucleolysin tia-1, putative [Ricinus communis]
gi|223531377|gb|EEF33213.1| nucleolysin tia-1, putative [Ricinus communis]
Length = 422
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ K++R ++++ +GF+ + D + A +
Sbjct: 55 VYVGNIHTQVTEPLLQEVFASTGPVESCKLIRKEKSS----YGFIHYFDRRSAALAILSL 110
Query: 85 ND------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
N + +F GDL +VTD L FS Y S A+V+
Sbjct: 111 NGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYHSCSDARVM 170
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D++T +++GFGFVSF++ QD A +N+ ++G + R + KG
Sbjct: 171 WDQKTGRSRGFGFVSFRNQQD---AQSAINDLTGKWLGSRQIRCNWATKG 217
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ + +F GDL +VTD L FS Y S A+V+ D++T +++GFGF
Sbjct: 124 WAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYHSCSDARVMWDQKTGRSRGFGF 183
Query: 69 VSFKDPQDFIRANKEMND 86
VSF++ QD A +ND
Sbjct: 184 VSFRNQQD---AQSAIND 198
>gi|226491568|ref|NP_001142233.1| uncharacterized protein LOC100274401 [Zea mays]
gi|194707728|gb|ACF87948.1| unknown [Zea mays]
gi|414886903|tpg|DAA62917.1| TPA: hypothetical protein ZEAMMB73_604225 [Zea mays]
Length = 465
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 31/157 (19%)
Query: 25 LFCGDLGNDVTDELL-IRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSF----KDPQDFI 78
L+ GDL + + + L F+ + + K++R+K+T ++G+GF+ F +
Sbjct: 116 LWIGDLQHWMDENYLHYNAFAAVAQQIASVKIIRNKQTGHSEGYGFIEFYSRAAAEHTLM 175
Query: 79 RANKEM------------------------NDDFRLFCGDLGNDVTDELLIRTF-SKYPS 113
N +M D +F GDL +DVTD +L F +KYPS
Sbjct: 176 NFNGQMMPNVEMTFKLNWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPS 235
Query: 114 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A VV D+ T KGFGFV F D + RA EMN
Sbjct: 236 VRGANVVVDRMTGWPKGFGFVRFGDLNEQARAMTEMN 272
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 11 SWIKKTCEDE-----NDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTK 64
+W + D+ +D +F GDL +DVTD +L F +KYPS A VV D+ T K
Sbjct: 192 NWASASTGDKRGDSGSDRTIFVGDLAHDVTDSMLEDVFRAKYPSVRGANVVVDRMTGWPK 251
Query: 65 GFGFVSFKDPQDFIRANKEMN 85
GFGFV F D + RA EMN
Sbjct: 252 GFGFVRFGDLNEQARAMTEMN 272
>gi|359806849|ref|NP_001241058.1| uncharacterized protein LOC100776344 [Glycine max]
gi|255634852|gb|ACU17785.1| unknown [Glycine max]
Length = 340
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 9 ISSWIKKTCE-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
I+ IK D +LF L + T E L F ++ + V+ DK T K++G+G
Sbjct: 52 IAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYG 111
Query: 68 FVSFKD---PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTD 101
F++FK+ Q +RA ++ D +L+ G L +VT
Sbjct: 112 FITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTS 171
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
E+L+ F+++ + V D+ TN+++GFGFV++K
Sbjct: 172 EILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYK 207
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ G L +VT E+L+ F+++ + V D+ TN+++GFGFV++K A K+
Sbjct: 159 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKT----AEAAKK 214
Query: 84 MNDDFRLFCG 93
DD G
Sbjct: 215 AIDDLEKTLG 224
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD---PQDFIRA 145
+LF L + T E L F ++ + V+ DK T K++G+GF++FK+ Q +RA
Sbjct: 68 KLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRA 127
Query: 146 NKEM 149
++
Sbjct: 128 PSKL 131
>gi|449486336|ref|XP_004177123.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Taeniopygia guttata]
Length = 167
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 25/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 12 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 71
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 72 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVC 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D+ N ++G+GFV F+ + RA + MN
Sbjct: 132 DE--NGSRGYGFVHFETHEAATRAIETMN 158
>gi|171694297|ref|XP_001912073.1| hypothetical protein [Podospora anserina S mat+]
gi|170947097|emb|CAP73902.1| unnamed protein product [Podospora anserina S mat+]
Length = 513
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 19/133 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + TD+ L FS + ++ V+RD T +++GFGF++FKDP+
Sbjct: 15 KMFIGGLNWETTDQSLRDYFSTFGEVVECTVMRDGATGRSRGFGFLTFKDPKTVNIVMVK 74
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA E ++F G + + TD F+++ + A ++ DK
Sbjct: 75 EHYLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKD 134
Query: 125 TNKTKGFGFVSFK 137
T + +GFGFV+F+
Sbjct: 135 TGRPRGFGFVTFE 147
Score = 39.7 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
E E ++F G + + TD F+++ + A ++ DK T + +GFGFV+F+
Sbjct: 93 EQEKTSKIFVGGVSQETTDHEFREYFAQFGRVVDATLMMDKDTGRPRGFGFVTFE 147
>gi|326528543|dbj|BAJ93453.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 416
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + L F+ K++R+K + +G+GF+ F + + +
Sbjct: 19 LWIGDLQYWADENYLYGCFAHTGEVQSVKLIRNKLSGLPEGYGFIEFISHEAAEKVLQAY 78
Query: 85 ND----------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFL 115
N D +F GDL DVTD LL TF Y S
Sbjct: 79 NGAQMPGTELTFRLNWASFSSGEKRPDAGPDHSIFVGDLAPDVTDYLLQETFRVNYSSVR 138
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 139 GAKVVTDPNTGRSKGYGFVKFADENEKTRAMSEMN 173
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F D + RA
Sbjct: 109 DHSIFVGDLAPDVTDYLLQETFRVNYSSVRGAKVVTDPNTGRSKGYGFVKFADENEKTRA 168
Query: 81 NKEMNDDFRLFC 92
EMN ++C
Sbjct: 169 MSEMNG---VYC 177
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 33 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 90
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F+K+ +FL
Sbjct: 91 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEDMDDERLKEIFNKFGAFL 150
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + ++KGFGFVSF+ +D +A EMN
Sbjct: 151 SVKVMTDD-SGRSKGFGFVSFEKHEDAQKAVDEMN 184
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L + FS + +V RD T ++ G+ +++F+ P D A M
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F ++ + ++ L TFS + + L KVV
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F ++ + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ E L F+++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V+ D+R +++GFGFV+F + D RA EMN
Sbjct: 219 SVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMN 252
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ E L F+++ L V+ D+R +++GFGFV+F + D RA EM
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ Y + AKV+ D ++GFGFV F P++ +A EMN
Sbjct: 312 KEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMN 354
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D T K++GFGFVS++ +D +A ++M
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K++GFGFVS++ +D +A ++MN
Sbjct: 219 SVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMN 252
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSR 176
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMN 252
>gi|367014029|ref|XP_003681514.1| hypothetical protein TDEL_0E00600 [Torulaspora delbrueckii]
gi|359749175|emb|CCE92303.1| hypothetical protein TDEL_0E00600 [Torulaspora delbrueckii]
Length = 547
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + T++ L FSKY + K+++D T +++GFGF++F +P
Sbjct: 158 KMFIGGLNWETTEDTLRDYFSKYGKVIDLKIMKDTNTGRSRGFGFLTFDEPSSVDEVVKT 217
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA +E + ++F G +G DV + F+++ + + A+++ DK
Sbjct: 218 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGADVRPKEFEEFFAQWGTIIDAQLMLDKD 277
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGFV++ P
Sbjct: 278 TGRSRGFGFVTYDSP 292
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
D ++F G L + T++ L FSKY + K+++D T +++GFGF++F +P
Sbjct: 155 DICKMFIGGLNWETTEDTLRDYFSKYGKVIDLKIMKDTNTGRSRGFGFLTFDEP 208
Score = 42.0 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + ++F G +G DV + F+++ + + A+++ DK T +++GFGFV++ P
Sbjct: 236 EQDKTGKIFVGGIGADVRPKEFEEFFAQWGTIIDAQLMLDKDTGRSRGFGFVTYDSPDAV 295
Query: 78 IRANKEMNDDFR 89
R + DF+
Sbjct: 296 DRVCQNKFIDFK 307
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L + FS + +V RD T ++ G+ +++F+ P D A M
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F ++ + ++ L TFS + + L KVV
Sbjct: 73 NYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F ++ + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ E L F+++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V+ D+R +++GFGFV+F + D RA EMN
Sbjct: 219 SVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMN 252
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ E L F+++ L V+ D+R +++GFGFV+F + D RA EM
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ Y + AKV+ D ++GFGFV F P++ +A EMN
Sbjct: 312 KEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMN 354
>gi|156837267|ref|XP_001642663.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113219|gb|EDO14805.1| hypothetical protein Kpol_1076p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 526
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L + T+E L F+KY ++ K+++D T +++GFGF++F+D
Sbjct: 157 KMFIGGLNWETTEETLRDYFNKYGKVVELKIMKDNNTGRSRGFGFLTFEDATSVDEVVKT 216
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA +E + ++F G +G DV + F++Y + + A+++ DK
Sbjct: 217 QHILDGKVIDPKRAIPREEQDKTGKIFVGGIGADVRPKEFEDFFAQYGTIIDAQLMLDKD 276
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGFV++ P
Sbjct: 277 TGRSRGFGFVTYDSP 291
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
D ++F G L + T+E L F+KY ++ K+++D T +++GFGF++F+D
Sbjct: 154 DSCKMFIGGLNWETTEETLRDYFNKYGKVVELKIMKDNNTGRSRGFGFLTFED 206
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E + ++F G +G DV + F++Y + + A+++ DK T +++GFGFV++ P
Sbjct: 235 EQDKTGKIFVGGIGADVRPKEFEDFFAQYGTIIDAQLMLDKDTGRSRGFGFVTYDSP 291
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D T K++GFGFVS++ +D +A ++M
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K++GFGFVS++ +D +A ++MN
Sbjct: 219 SVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDMN 252
>gi|326531842|dbj|BAK01297.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 291
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ VTD LL F K++R ++++ FGFV + D +
Sbjct: 74 VYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSS----FGFVDYYDRRYAALAIVSL 129
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L FS Y + A+V+
Sbjct: 130 NGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFVFFSAYSTCSDARVM 189
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D+++ +++GFGFVSF++ QD A +NE ++G+ + R + KG
Sbjct: 190 WDQQSGRSRGFGFVSFRNQQD---AQTAINELNGKWLGNRQIRCNWATKG 236
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 11 SWIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
+W + + E+ F +F GDL +VTD L FS Y + A+V+ D+++ +++GFG
Sbjct: 142 NWAYASTQREDTSGHFNIFVGDLCPEVTDAALFVFFSAYSTCSDARVMWDQQSGRSRGFG 201
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSF++ QD A E+N +
Sbjct: 202 FVSFRNQQDAQTAINELNGKW 222
>gi|238883643|gb|EEQ47281.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 452
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 33/165 (20%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDF-- 77
NDF+++ GDL T+E + ++K S K++RD+ + FV+F+D +
Sbjct: 81 NDFQMWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDL 140
Query: 78 -IRANKE---------------------------MNDDFRLFCGDLGNDVTDELLIRTFS 109
I+ N + ++++ +F GDL +V+D L F+
Sbjct: 141 AIQRNGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFN 200
Query: 110 -KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
KYP+ +K AKV+ D T K+KGFGFV F P RA KEM +
Sbjct: 201 MKYPNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGY 245
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFK 72
++ N++ +F GDL +V+D L F+ KYP+ +K AKV+ D T K+KGFGFV F
Sbjct: 171 RSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGFVKFH 230
Query: 73 DPQDFIRANKEM 84
P RA KEM
Sbjct: 231 SPDIMNRALKEM 242
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+++TDE L FS + L +V+RD++ +++GFGFV++ +D +A EM
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEK-GRSRGFGFVNYAHHEDAQKAVDEM 251
Query: 85 N----------------------------DDFR-----------LFCGDLGNDVTDELLI 105
N D + L+ +L + + DE L
Sbjct: 252 NGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTE--AGQSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L + FS + +V RD T ++ G+ +++F+ P D A M
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F ++ + + ++ L TFS + + L KVV
Sbjct: 73 NYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNIDDSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+R +KG+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DER--GSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F ++ + + ++ L TFS + + L KVV D+R +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNIDDSIDNKALYDTFSAFGNILSCKVVCDER--GSKGYGFVHFETQEAANRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+++TDE L FS + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDEKLKEAFSAFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V+RD++ +++GFGFV++ +D +A EMN
Sbjct: 219 SVRVMRDEK-GRSRGFGFVNYAHHEDAQKAVDEMN 252
>gi|296081803|emb|CBI20808.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT++LL F K++R +++ +GFV + D
Sbjct: 21 VYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSS----YGFVDYLDRASASLAIMTL 76
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L FS + S A+V+
Sbjct: 77 HGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVM 136
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF++ QD A +N+ ++G+ + R + KG
Sbjct: 137 WDHKTGRSKGYGFVSFRNQQD---AQSAINDLSGKWLGNRQIRCNWATKG 183
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 63/198 (31%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS + S A+V+ D +T ++KG+GF
Sbjct: 90 WAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGF 149
Query: 69 VSFKDPQDF----------------IRAN-----------KEMNDD-------------- 87
VSF++ QD IR N K++N++
Sbjct: 150 VSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGS 209
Query: 88 ---------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
++ G+L ++VT L F L A V+ + R + KGFG
Sbjct: 210 QENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHA----LGAGVIEEVRIQRDKGFG 265
Query: 133 FVSFKDPQDFIRANKEMN 150
FV + ++ A + N
Sbjct: 266 FVRYHTHEEAALAIQMAN 283
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 43/170 (25%)
Query: 21 NDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
N+F ++ + G+D+ DE L FSKY L KV+ D K+KGFGFVSF + +
Sbjct: 286 NEFTNVYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS-GGKSKGFGFVSFDSHEAAKK 344
Query: 80 ANKEMN---------------------------------------DDFRLFCGDLGNDVT 100
A +EMN +L+ +L + +
Sbjct: 345 AVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTID 404
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
DE L R FS + S + K++R++ ++KGFG + F P++ +A EMN
Sbjct: 405 DEKLWREFSSFGSISRVKIMREE--GRSKGFGLICFSSPEEATKAMAEMN 452
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 36/173 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + L +KV+ D + ++G+ FV F++ RA +EM
Sbjct: 199 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQNAADRAIEEM 256
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N D RLF G + G+D+ DE L FSKY L
Sbjct: 257 NGALLKDCRLFVGRFKNRKDREAELQNKVNEFTNVYVKNFGDDMDDERLKEVFSKYGKTL 316
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
KV+ D K+KGFGFVSF + +A +EMN LFVG + +S
Sbjct: 317 SVKVMTDS-GGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKS 368
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL + FS L ++ RD T ++ G+ +V+F D +A M
Sbjct: 111 LYVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLADAQKALDTM 170
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L FS + L +KV+
Sbjct: 171 NFDMIKGKPIRLMWSQRDAYLRKSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 230
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++G+ FV F++ RA +EMN LFVG K R
Sbjct: 231 DDQG--SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNR 274
>gi|225429862|ref|XP_002283326.1| PREDICTED: nucleolysin TIAR [Vitis vinifera]
Length = 436
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT++LL F K++R +++ +GFV + D
Sbjct: 60 VYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKDKSS----YGFVDYLDRASASLAIMTL 115
Query: 76 ------------DFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
++ A+ + D F +F GDL +VTD L FS + S A+V+
Sbjct: 116 HGRQVYGQALKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVM 175
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170
D +T ++KG+GFVSF++ QD A +N+ ++G+ + R + KG
Sbjct: 176 WDHKTGRSKGYGFVSFRNQQD---AQSAINDLSGKWLGNRQIRCNWATKG 222
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 63/198 (31%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL +VTD L FS + S A+V+ D +T ++KG+GF
Sbjct: 129 WAYASGQREDTSGHFNIFVGDLSPEVTDATLYACFSVFASCSDARVMWDHKTGRSKGYGF 188
Query: 69 VSFKDPQDF----------------IRAN-----------KEMNDD-------------- 87
VSF++ QD IR N K++N++
Sbjct: 189 VSFRNQQDAQSAINDLSGKWLGNRQIRCNWATKGAGFNEDKQVNENQNAVVLTNGSSDGS 248
Query: 88 ---------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
++ G+L ++VT L F L A V+ + R + KGFG
Sbjct: 249 QENTNEEAPENNPAYTTVYVGNLSHEVTQAELHCQFHA----LGAGVIEEVRIQRDKGFG 304
Query: 133 FVSFKDPQDFIRANKEMN 150
FV + ++ A + N
Sbjct: 305 FVRYHTHEEAALAIQMAN 322
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DD--HGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSR 176
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMN 252
>gi|68485797|ref|XP_713179.1| hypothetical protein CaO19.9432 [Candida albicans SC5314]
gi|68485890|ref|XP_713133.1| hypothetical protein CaO19.1876 [Candida albicans SC5314]
gi|46434612|gb|EAK94016.1| hypothetical protein CaO19.1876 [Candida albicans SC5314]
gi|46434659|gb|EAK94062.1| hypothetical protein CaO19.9432 [Candida albicans SC5314]
Length = 452
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 33/165 (20%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDF-- 77
NDF+++ GDL T+E + ++K S K++RD+ + FV+F+D +
Sbjct: 81 NDFQMWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDL 140
Query: 78 -IRANKE---------------------------MNDDFRLFCGDLGNDVTDELLIRTFS 109
I+ N + ++++ +F GDL +V+D L F+
Sbjct: 141 AIQRNGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFN 200
Query: 110 -KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
KYP+ +K AKV+ D T K+KGFGFV F P RA KEM +
Sbjct: 201 MKYPNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGY 245
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFK 72
++ N++ +F GDL +V+D L F+ KYP+ +K AKV+ D T K+KGFGFV F
Sbjct: 171 RSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGFVKFH 230
Query: 73 DPQDFIRANKEM 84
P RA KEM
Sbjct: 231 SPDIMNRALKEM 242
>gi|449459840|ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
gi|449498825|ref|XP_004160645.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
Length = 379
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ E D + G+L V++ELL F + + V +D+ TN +G+GF+ F+
Sbjct: 16 QHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRS 75
Query: 74 PQDF----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKY 111
+D IR NK D LF G+L DV ++LL TFS +
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 112 PSFL-KAKVVRDKRTNKTKGFGFVSF 136
+ K++RD T ++GFGF+S+
Sbjct: 136 GVIVTNPKIMRDPDTGNSRGFGFISY 161
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
E N D + G+L V++ELL F + + V +D+ TN +G+GF+ F+ +D
Sbjct: 20 ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
Query: 143 IRANKEMN 150
A K +N
Sbjct: 80 DYAIKVLN 87
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 13 IKKTCEDENDF----RLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFG 67
+ K +D+ LF G+L DV ++LL TFS + + K++RD T ++GFG
Sbjct: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
F+S+ + A + MN +
Sbjct: 158 FISYDSFEASDAAIEAMNGQY 178
>gi|357148481|ref|XP_003574781.1| PREDICTED: nucleolysin TIAR-like [Brachypodium distachyon]
Length = 452
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 28/149 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
++ G++ +VT+ LLI F + K++R ++++ FGFV + D +
Sbjct: 79 VYVGNVHPNVTESLLIEVFQSSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMSL 134
Query: 76 -------DFIRAN--------KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV 120
I+ N ++ + F +F GDL ++V D L FS Y S A+V+
Sbjct: 135 HGRHIYGQAIKVNWAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSVYTSCSDARVM 194
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
D +T +++G+GFVSF++ Q+ A EM
Sbjct: 195 WDNKTGRSRGYGFVSFRNQQEAETAITEM 223
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 12 WIKKTCEDEN---DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
W + + E+ F +F GDL ++V D L FS Y S A+V+ D +T +++G+GF
Sbjct: 148 WAYASTQREDTSGHFHIFVGDLSSEVNDATLYACFSVYTSCSDARVMWDNKTGRSRGYGF 207
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF++ Q+ A EM +
Sbjct: 208 VSFRNQQEAETAITEMTGKW 227
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DD--HGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSR 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L V + L FS++ L KV+RD + ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAISTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L V + L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARATAFTNIYVKNLPGHVDERGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVMDMN 252
>gi|149244792|ref|XP_001526939.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449333|gb|EDK43589.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 223
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 42/70 (60%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ FRLF G+LG D TDELL F KY + V DK T K KGFGFV+F D++
Sbjct: 131 NPKHFRLFVGNLGPDATDELLRSAFIKYATLSNVYVPMDKATKKPKGFGFVAFASADDYL 190
Query: 79 RANKEMNDDF 88
+A K+MN +
Sbjct: 191 QAFKDMNGKY 200
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+LG D TDELL F KY + V DK T K KGFGFV+F D+++A
Sbjct: 134 HFRLFVGNLGPDATDELLRSAFIKYATLSNVYVPMDKATKKPKGFGFVAFASADDYLQAF 193
Query: 147 KEMN 150
K+MN
Sbjct: 194 KDMN 197
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F P D RA M
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D T K++GFGF+S++ +D +A ++M
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ ++ ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMNDERLKELFDKYGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T K++GFGF+S++ +D +A ++MN
Sbjct: 219 SVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDMN 252
>gi|309271474|ref|XP_003085306.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Mus
musculus]
Length = 229
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + M
Sbjct: 33 LYVGDLHPEVTESMLYEKFSPAGPILSIRICRDKVTRRSLGYAYVNYQQPVDAKRALETM 92
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 93 NFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 152
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D++ KG+GFV F+ + RA +N + +FVG K+
Sbjct: 153 DEKG--PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSH 196
>gi|410077429|ref|XP_003956296.1| hypothetical protein KAFR_0C01680 [Kazachstania africana CBS 2517]
gi|372462880|emb|CCF57161.1| hypothetical protein KAFR_0C01680 [Kazachstania africana CBS 2517]
Length = 479
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK- 82
++F G L + T+E L F+KY K+++D T +++GFGF++F+ P K
Sbjct: 95 KMFIGGLNWETTEETLRDYFNKYGHVTDLKIMKDSNTGRSRGFGFLTFEHPSSVDEVVKT 154
Query: 83 ------------------EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
E + ++F G +G DV + FS+Y + + A+++ DK
Sbjct: 155 QHILDGKVIDPKRSIPREEQDKTGKIFVGGIGADVRPKEFEEFFSQYGNIIDAQLMLDKD 214
Query: 125 TNKTKGFGFVSFKDP 139
T +++GFGFV++ P
Sbjct: 215 TGRSRGFGFVTYDSP 229
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
D+ ++F G L + T+E L F+KY K+++D T +++GFGF++F+ P
Sbjct: 92 DNCKMFIGGLNWETTEETLRDYFNKYGHVTDLKIMKDSNTGRSRGFGFLTFEHP 145
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E + ++F G +G DV + FS+Y + + A+++ DK T +++GFGFV++ P
Sbjct: 173 EQDKTGKIFVGGIGADVRPKEFEEFFSQYGNIIDAQLMLDKDTGRSRGFGFVTYDSP 229
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L F L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
D N +KGFGFV ++ + RA +++N E +FV K+R+
Sbjct: 124 D--INGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRN 168
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 31/143 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
+F +L + ++ L TFS + + L KVV D N +KGFGFV ++
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKV 149
Query: 73 ------DPQDFIRANKEMNDDFR-----------LFCGDLGNDVTDELLIRTFSKYPSFL 115
D + F+ K ND R LF +L + + L++ F ++ +
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVV 209
Query: 116 KAKVVRDKRTNKTKGFGFVSFKD 138
KV+ D+ T +K GF+SFK+
Sbjct: 210 SHKVICDETTGLSKCHGFISFKE 232
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V D L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 122 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 181 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 240
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 241 REFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 283
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 30 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 87
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V D L FS++ L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDGNLKELFSQFGKTL 147
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + K+KGFGFVS++ +D +A +EMN
Sbjct: 148 SVKVMRDS-SGKSKGFGFVSYEKHEDANKAVEEMN 181
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DD--HGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSR 176
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDD-IGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAHQAIATM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD ++GFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMRDD-IGHSRGFGFVNFEKHEEAQKAVMDMN 252
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPVRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DD--HGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSR 176
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDD-IGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAHQAIATM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD ++GFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMRDD-IGHSRGFGFVNFEKHEEAQKAVMDMN 252
>gi|399218847|emb|CCF75734.1| unnamed protein product [Babesia microti strain RI]
Length = 237
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 22/132 (16%)
Query: 27 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN- 85
G+L V +E+L F++ + RDK TN+ +G+GFV F + + A K MN
Sbjct: 29 SGNLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGFVEFDNETEADYAQKVMNA 88
Query: 86 --------------DDFR-------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D R LF G+L DV ++LL TFS + L K+VR++
Sbjct: 89 LKVYHKPIRCNKASQDKRTYEIGANLFIGNLDPDVDEKLLYDTFSAFGLVLSTKIVREEE 148
Query: 125 TNKTKGFGFVSF 136
T KGFGFVSF
Sbjct: 149 TGLGKGFGFVSF 160
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
LF G+L DV ++LL TFS + L K+VR++ T KGFGFVSF
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGLVLSTKIVREEETGLGKGFGFVSF 160
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 83 EMNDDFRLFCG----DLGN---DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
E N + L+ G D GN V +E+L F++ + RDK TN+ +G+GFV
Sbjct: 13 ERNQEATLYIGTKSVDSGNLDPQVDEEILWELFTQVGIVRNVHIPRDKVTNQHQGYGFVE 72
Query: 136 FKDPQDFIRANKEMNEF 152
F + + A K MN
Sbjct: 73 FDNETEADYAQKVMNAL 89
>gi|356510359|ref|XP_003523906.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 409
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 75/176 (42%), Gaps = 46/176 (26%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ D +F GDL DVTD +L TF+ +YPS AKVV D T ++KG+GFV F D
Sbjct: 165 KRSDNVPDLSIFVGDLAADVTDSMLHETFTNRYPSVKAAKVVFDANTGRSKGYGFVRFGD 224
Query: 74 PQDFIRANKEMNDDF---------------------------------------RLFCGD 94
+ +A EMN + +F G
Sbjct: 225 DNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSEADSTNTTIFVGG 284
Query: 95 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
L +VT E L + FS+Y + K+ KG GFV F + + A +++N
Sbjct: 285 LDPNVTAEDLKQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLN 334
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L F L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
D N +KGFGFV ++ + RA +++N E +FV K+R+
Sbjct: 124 D--INGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRN 168
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 40/165 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF +L + + L++ F ++ + KV+ D+ T +K GF+SFK+ A + M
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 85 NDD----FRLFCG-----------------------------------DLGNDVTDELLI 105
++ +L+CG +L + + DE L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLR 303
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
F ++ + AKV+ D ++KGFGFV F P++ +A EMN
Sbjct: 304 EAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMN 347
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 31/143 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
+F +L + ++ L TFS + + L KVV D N +KGFGFV ++
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKV 149
Query: 73 ------DPQDFIRANKEMNDDFR-----------LFCGDLGNDVTDELLIRTFSKYPSFL 115
D + F+ K ND R LF +L + + L++ F ++ +
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKNFEQFGEVV 209
Query: 116 KAKVVRDKRTNKTKGFGFVSFKD 138
KV+ D+ T +K GF+SFK+
Sbjct: 210 SHKVICDETTGLSKCHGFISFKE 232
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L + + DE L F ++ + AKV+ D ++KGFGFV F P++ +A EM
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEM 346
Query: 85 NDDFRLFCG 93
N R+F G
Sbjct: 347 NG--RIFGG 353
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL NDVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + L KVV
Sbjct: 73 NFDVIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGDILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSF 136
D+ N +KG+GFV F
Sbjct: 133 DE--NGSKGYGFVHF 145
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 41/165 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP---------- 74
+F + G+++ DE L F +Y + KV++D + + KGFGFV F+DP
Sbjct: 193 VFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDL 252
Query: 75 ---------------QDFIRANKEMNDDFR--------------LFCGDLGNDVTDELLI 105
Q I E+ + F L+ +L + + DE L
Sbjct: 253 NMKDINGRILYVGRAQKKIERQAELRNRFELMKAERANRYQGVNLYVKNLDDSLDDERLR 312
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 313 KEFMPFGTITSAKVMSEG--GRSKGFGFVCFSSPEEATKAVTEMN 355
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T + G+ +V+F+ D R + M
Sbjct: 4 LYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + + L FS + + L KVV
Sbjct: 64 NLDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLEKSIDNRALFDAFSGFGNILSCKVVS 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRSSITLK 169
D+ N +KG+GFV F+ + +A ++MN + +FVG K+R L+
Sbjct: 124 DE--NGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELE 173
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L FS + + L KVV D+ N +KG+GFV F+ + +A ++M
Sbjct: 92 IFVKNLEKSIDNRALFDAFSGFGNILSCKVVSDE--NGSKGYGFVHFETQESAEKAIEKM 149
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N ++F G + G D+ + L F ++ L
Sbjct: 150 NGIVLKSLKVFVGHFKSRKERELELGARAREFTNVYIKNFGEDMDNARLGEIFGRFGRAL 209
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+R ++KGFGFVS+ +D RA EMN
Sbjct: 210 SVKVMTDER-GRSKGFGFVSYATHEDAQRAVDEMN 243
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ + L F ++ L KV+ D+R ++KGFGFVS+ +D RA EM
Sbjct: 184 VYIKNFGEDMDNARLGEIFGRFGRALSVKVMTDER-GRSKGFGFVSYATHEDAQRAVDEM 242
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 243 NGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLR 302
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS + + AKV+ + ++GFGFV F P + +A EMN
Sbjct: 303 TEFSPFGTITSAKVMMEG--GHSRGFGFVCFSAPDEAAKAVTEMN 345
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +V++ +L FS L +V RD T ++ G+ +V+F+ P D RA + M
Sbjct: 13 LYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALETM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + +KG+GFV F+ RA +MN +FVG K+R
Sbjct: 133 DE--HGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + +KG+GFV F+ RA +M
Sbjct: 101 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDE--HGSKGYGFVHFETRDAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D L R F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDLRLKRLFGKFGPSL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + +KGFGFV+F+ +D +A +EMN
Sbjct: 219 SVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEMN 252
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D L R F K+ L KV+ D+ + +KGFGFV+F+ +D +A +EM
Sbjct: 193 VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDE-SGTSKGFGFVNFERHEDAQKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + NK GFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEGGRNK--GFGFVCFSSPEEATKAVTEMN 354
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSR 176
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDV-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDV-SGHSRGFGFVNFEKHEEAQKAVVNMN 252
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L F L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTRS 164
D N +KGFGFV ++ + RA +++N E +FV K+R+
Sbjct: 124 D--INGSKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRN 168
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 40/165 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF +L + + L+ F ++ + KV+ D+ T +K GF+SFK+ A + M
Sbjct: 184 LFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 85 NDD----FRLFCG-----------------------------------DLGNDVTDELLI 105
++ +L+CG +L + + DE L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVNLYVKNLDDSIDDEGLR 303
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
F ++ + AKV+ D ++KGFGFV F P++ +A EMN
Sbjct: 304 EAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEMN 347
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK------------ 72
+F +L + ++ L TFS + + L KVV D N +KGFGFV ++
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVVCD--INGSKGFGFVHYESDESAQRAIEKV 149
Query: 73 ------DPQDFIRANKEMNDDFR-----------LFCGDLGNDVTDELLIRTFSKYPSFL 115
D + F+ K ND R LF +L + + L+ F ++ +
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLENFEQFGEVV 209
Query: 116 KAKVVRDKRTNKTKGFGFVSFKD 138
KV+ D+ T +K GF+SFK+
Sbjct: 210 SHKVICDETTGLSKCHGFISFKE 232
Score = 45.1 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ +L + + DE L F ++ + AKV+ D ++KGFGFV F P++ +A EM
Sbjct: 288 LYVKNLDDSIDDEGLREAFKQFGNITSAKVITD-LNGRSKGFGFVCFSSPEEATKAVTEM 346
Query: 85 NDDFRLFCG 93
N R+F G
Sbjct: 347 NG--RIFGG 353
>gi|356572088|ref|XP_003554202.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Glycine max]
Length = 336
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 27/156 (17%)
Query: 9 ISSWIKKTCE-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
I+ IK D +LF L + T E L F ++ + V+ DK T K++G+G
Sbjct: 51 IAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYG 110
Query: 68 FVSFKD---PQDFIRANKEMNDDF-----------------------RLFCGDLGNDVTD 101
F++FK+ Q +RA ++ D +L+ G L +VT
Sbjct: 111 FITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTS 170
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
E+L+ F+++ + V D+ TN+++GFGFV++K
Sbjct: 171 EILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYK 206
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ G L +VT E+L+ F+++ + V D+ TN+++GFGFV++K + A K
Sbjct: 158 KLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAE---AAKKA 214
Query: 84 MNDDFRLFCG 93
++D ++ G
Sbjct: 215 IDDVEKMLGG 224
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD---PQDFIRA 145
+LF L + T E L F ++ + V+ DK T K++G+GF++FK+ Q +RA
Sbjct: 67 KLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIFDKVTGKSRGYGFITFKNMESTQQALRA 126
Query: 146 NKEM 149
++
Sbjct: 127 PSKL 130
>gi|348570494|ref|XP_003471032.1| PREDICTED: polyadenylate-binding protein 1-like 2-like [Cavia
porcellus]
Length = 200
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 124 DEKG--PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSH 167
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KVV
Sbjct: 73 NFEVIRGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 D--NHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSR 176
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVTDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
R FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 REFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQDFIRA 80
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ Q +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--NHGSRGFGFVHFETHEAAQQAIVTM 158
Query: 81 NKEMNDDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N + +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARAMEFTNIYVKNLHVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++GFGFV+F+ ++ +A +MN
Sbjct: 219 SVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVTDMN 252
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L + FS + +V RD T ++ G+ +++F+ P D A M
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F ++ + ++ L TFS + + L KVV
Sbjct: 73 NYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+R +KG+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DER--GSKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSR 176
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F ++ + ++ L TFS + + L KVV D+R +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDER--GSKGYGFVHFETEEAANRAIETM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D DE L F+ + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREEELGSKALKFTNIYIKNFGEDYNDEKLKEVFAAFGRTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+V++D+R +++GFGFV+F +D +A EMN
Sbjct: 219 SVRVMKDER-GRSRGFGFVNFAHHEDAQKAVDEMN 252
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D DE L F+ + L +V++D+R +++GFGFV+F +D +A EM
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDER-GRSRGFGFVNFAHHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ Y + AKV+ D +++GFGFV F P++ +A EMN
Sbjct: 312 KEFAPYGTITSAKVMTDG--PQSRGFGFVCFSSPEEATKAVTEMN 354
>gi|403335220|gb|EJY66784.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 307
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + L+ G+L V +EL+ F + + + + RDK TN+ G+GFV FK +D
Sbjct: 15 ERNQEATLYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDA 74
Query: 78 ----------------IRANKEMND------DFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
I+ NK D +F G+L DV +++L FS + L
Sbjct: 75 DYAIKIMHMVKLFGKPIKVNKASQDKRTQEVGANVFVGNLHEDVDEKMLRDVFSSFGIVL 134
Query: 116 KAKVVRDKRTNKTKGFGFVSF 136
K++RD T +K +GFVS+
Sbjct: 135 STKIMRDPETQVSKRYGFVSY 155
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
E N + L+ G+L V +EL+ F + + + + RDK TN+ G+GFV FK +D
Sbjct: 15 ERNQEATLYVGNLDTKVNEELVWELFLQCGAIVNVHIPRDKVTNEHSGYGFVEFKTEEDA 74
Query: 143 IRANKEMN 150
A K M+
Sbjct: 75 DYAIKIMH 82
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F G+L DV +++L FS + L K++RD T +K +GFVS+ + + + + M
Sbjct: 109 VFVGNLHEDVDEKMLRDVFSSFGIVLSTKIMRDPETQVSKRYGFVSYDNFESSDASIQAM 168
Query: 85 NDDFRLFCG 93
N + CG
Sbjct: 169 NGQY--LCG 175
>gi|448519256|ref|XP_003868046.1| hypothetical protein CORT_0B09070 [Candida orthopsilosis Co 90-125]
gi|380352385|emb|CCG22611.1| hypothetical protein CORT_0B09070 [Candida orthopsilosis]
Length = 185
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ FRLF G+LG D TD+LL F KY S V DK T K KG+GFV+F + D++
Sbjct: 91 NPKHFRLFVGNLGPDATDDLLRGAFGKYSSMSNVHVPIDKHTKKPKGYGFVAFSNADDYL 150
Query: 79 RANKEMNDDF 88
+A K+MN +
Sbjct: 151 QAFKDMNGKY 160
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
FRLF G+LG D TD+LL F KY S V DK T K KG+GFV+F + D+++A
Sbjct: 94 HFRLFVGNLGPDATDDLLRGAFGKYSSMSNVHVPIDKHTKKPKGYGFVAFSNADDYLQAF 153
Query: 147 KEMN-----EFP 153
K+MN +FP
Sbjct: 154 KDMNGKYIGQFP 165
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,695,175,244
Number of Sequences: 23463169
Number of extensions: 105444420
Number of successful extensions: 287980
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10958
Number of HSP's successfully gapped in prelim test: 2708
Number of HSP's that attempted gapping in prelim test: 242509
Number of HSP's gapped (non-prelim): 38286
length of query: 170
length of database: 8,064,228,071
effective HSP length: 130
effective length of query: 40
effective length of database: 9,308,983,397
effective search space: 372359335880
effective search space used: 372359335880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)