BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7847
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 59/66 (89%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++R
Sbjct: 300 TDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVR 359
Query: 145 ANKEMN 150
A +EMN
Sbjct: 360 AMREMN 365
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 358
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 359 RAMREMNGRY 368
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 291 DDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 146 NKEMN 150
+EMN
Sbjct: 351 TREMN 355
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++
Sbjct: 289 EPDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYV 348
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 349 RATREMNGKY 358
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 366 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 425
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 426 FVSFKDPSDYVRAMREMNGKY 446
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 146 NKEMN 150
+EMN
Sbjct: 439 MREMN 443
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 334 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 393
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 394 FVSFKDPSDYVRAMREMNGKY 414
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMN 150
+EMN
Sbjct: 407 MREMN 411
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 360 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 419
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 420 FVSFKDPSDYVRAMREMNGKY 440
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMN 150
+EMN
Sbjct: 433 MREMN 437
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Query: 10 SSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
SSW + D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+G
Sbjct: 360 SSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYG 419
Query: 68 FVSFKDPQDFIRANKEMNDDF 88
FVSFKDP D++RA +EMN +
Sbjct: 420 FVSFKDPSDYVRAMREMNGKY 440
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMN 150
+EMN
Sbjct: 433 MREMN 437
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++R
Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVR 349
Query: 145 ANKEMN 150
A +EMN
Sbjct: 350 AMREMN 355
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFL+AKV+RDKRT KTKG+GFVSFKDP D++
Sbjct: 289 ESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYV 348
Query: 79 RANKEMNDDF 88
RA +EMN +
Sbjct: 349 RAMREMNGKY 358
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 1 MLGLRPGPISSW---------IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51
+ G P P W ++ T DE L+ GDL + + L F+ +
Sbjct: 32 IAGAAPPPPQMWNPQAAAPPSVQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVS 90
Query: 52 AKVVRDKRTNKTKGFGFVSFKD-------------------PQDFIRAN---------KE 83
AKV+R+K+T + +G+GF+ F P R N ++
Sbjct: 91 AKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
+ D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D +
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 143 IRANKEMNEFP----HLFVGDLKTRSSIT 167
IRA EMN P + +G ++ +T
Sbjct: 211 IRAMTEMNGVPCSTRPMRIGPAASKKGVT 239
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
T D N+ +F G L VTD+ L FS+Y + K+ KR GFV F +
Sbjct: 254 TDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSE 305
>sp|Q10355|YDB2_SCHPO Uncharacterized RNA-binding protein C22E12.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC22E12.02 PE=4 SV=1
Length = 219
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D N FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F+
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFL 84
Query: 79 RANKEMNDDF 88
+A +E N +
Sbjct: 85 KAWREKNGKY 94
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+ FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F++A
Sbjct: 28 NHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
Query: 146 NKEMN 150
+E N
Sbjct: 87 WREKN 91
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 31/167 (18%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I+ + ED ++ GDL + + L FS+ + K++R+K+T +++ +GFV F
Sbjct: 76 IQSSSEDNKT--IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFN 133
Query: 73 ------------------DPQDFIRAN----------KEMNDDFRLFCGDLGNDVTDELL 104
+ + R N E DF +F GDL +DVTD +L
Sbjct: 134 THAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTML 193
Query: 105 IRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
TF S+YPS AKVV D T +KG+GFV F D + RA EMN
Sbjct: 194 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMN 240
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 74/178 (41%), Gaps = 59/178 (33%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN +
Sbjct: 228 DESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQ 287
Query: 89 --------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L ++VTDE L ++F+++ + K+ KG GFV F D
Sbjct: 288 SDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIP------AGKGCGFVQFSD 339
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 29/161 (18%)
Query: 19 DENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP--- 74
+ N+ R L+ GDL + + L F + AKV+R+K+T +++G+GF+ F+
Sbjct: 79 NPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAA 138
Query: 75 ----QDF-------IRANKEMN-------------DDFRLFCGDLGNDVTDELLIRTF-S 109
Q + + N MN + +F GDL DVTD +L TF S
Sbjct: 139 ETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKS 198
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
Y S AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 199 VYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMN 239
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 67/160 (41%), Gaps = 47/160 (29%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D + +F GDL DVTD +L TF S Y S AKVV D+ T ++KG+GFV F D +
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 77 FIRANKEMN----------------------------------------DDFRLFCGDLG 96
+RA EMN ++ +F G L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
V +E L + FS Y + K+V KR GFV F
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVAGKRC------GFVQF 324
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF------------- 71
L+ GDL + + + L FS KV+R+K+T +++G+GFV F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 72 -----KDPQDFIRAN-----------KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ + R N E D +F GDL DV+D +L+ TF+ +YPS
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 76/186 (40%), Gaps = 55/186 (29%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 73 DPQDFIRANKEMNDDF-------------------------------------------- 88
D + RA EMN F
Sbjct: 264 DENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGE 323
Query: 89 ----RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+F G L DVT+E L++ FS + + K+ KG GFV F + Q
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEE 377
Query: 145 ANKEMN 150
A +N
Sbjct: 378 AIGNLN 383
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF----------KDP 74
L+ GDL + + + L FS KV+R+K T++++G+GFV F ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 75 QDFIRANK-------------------EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSF 114
+ N E D +F GDL DVTD LL TFS +YPS
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F D + RA EMN
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 193 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN +
Sbjct: 253 DENERSRALTEMNGAY 268
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 86 DDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
DD + L+ GDL + + + L FS KV+R+K T++++G+GFV F
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDP-------Q 75
++ GDL N + + L F+ + KV+R+K ++G+GFV F+ Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 76 DFIRANKEMND----------------------DFRLFCGDLGNDVTDELLIRTFS-KYP 112
+F A D D +F GDL DV+D LL TFS KYP
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 48/157 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 81 NKEMND-----------------------------------------DFRLFCGDLGNDV 99
EMN + +F G L + V
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
TDE L + FS++ + K+ KG GFV F
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQF 348
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 79 RANKEMN----DDFRLFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFG 132
R NK N ++ ++ GDL N + + L F+ + KV+R+K ++G+G
Sbjct: 90 RGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYG 149
Query: 133 FVSFK 137
FV F+
Sbjct: 150 FVEFE 154
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + L+ F AKV+R+K+ ++G+GF+ F + R +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 85 N--------DDFRL--------------------FCGDLGNDVTDELLIRTF-SKYPSFL 115
N FRL F GDL DVTD +L TF + Y S
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + IRA EMN
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMN 236
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+ +F GDL DVTD +L TF + Y S AKVV D+ T ++KG+GFV F D + IRA
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 232 MTEMNGQY 239
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L FS+ + KV+R+K T + +G+GF+ F R +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 85 ND---------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLK 116
N D +F GDL DVTD LL TF Y S
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRG 145
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D T ++KG+GFV F + + RA EMN
Sbjct: 146 AKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 81 NKEMNDDFRLFC 92
EMN L+C
Sbjct: 175 MAEMNG---LYC 183
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ PQ + + + L+ GDL V + L FS+ + KV+R+K T + +G+
Sbjct: 8 QPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGY 67
Query: 132 GFVSF 136
GF+ F
Sbjct: 68 GFIEF 72
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P+ +++ D + +L +VT+E L + FS+ + K+ TKG+
Sbjct: 221 APVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGY 274
Query: 67 GFVSFK 72
G+V FK
Sbjct: 275 GYVQFK 280
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL + + ++ F++ AKV+R+K T +++G+GF+ F R +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 85 ND-----------------------------DFRLFCGDLGNDVTDELLIRTFSK-YPSF 114
N D +F GDL +VTD +L TF Y S
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
AKVV D+ T ++KG+GFV F D + +RA EMN
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMN 217
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 47/158 (29%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 81 NKEMNDDF----------------------------------------RLFCGDLGNDVT 100
EMN + +F G L +VT
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
D+ L F ++ L K+ KR GFV + +
Sbjct: 273 DDELKSIFGQFGELLHVKIPPGKRC------GFVQYAN 304
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G+D+ DE L F KY L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA +MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F +Y + L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D K++GFGFVSF+ +D +A +MN
Sbjct: 219 SVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMN 252
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F +Y + L KV+ D K++GFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F+ + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ GDL + + + L +F+ + KV+R+K ++G+GFV F+ + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 83 EMN-----------------------------DDFRLFCGDLGNDVTDELLIRTFS-KYP 112
E N D +F GDL DV+D LL TFS KYP
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
S AKVV D T ++KG+GFV F D + +A EMN
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 66/157 (42%), Gaps = 48/157 (30%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 81 NKEMND-----------------------------------------DFRLFCGDLGNDV 99
EMN + +F G L + V
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
TDE L + F+++ + K+ KG GFV F
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQF 346
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ DE L F K+ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D+ + K+KGFGFVSF+ +D +A EMN
Sbjct: 219 SVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+ FV F+ + +A ++MN +FVG K+R
Sbjct: 133 DE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + S AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G +V DE L FS++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD K+KGFGFVS++ +D +A +EMN
Sbjct: 219 SVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMN 252
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 26/149 (17%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK--- 72
+ E EN ++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F
Sbjct: 16 SLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKT 75
Query: 73 ------------------DPQDFI-RANKEMNDDF----RLFCGDLGNDVTDELLIRTFS 109
DP+ + R +K ++ RL+ + D T+++L F+
Sbjct: 76 EVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFT 135
Query: 110 KYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
KY + K++++ DK T K +GFGFV+F D
Sbjct: 136 KYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F + A
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAA--- 80
Query: 149 MNEFPHLFVG 158
M + PH+ G
Sbjct: 81 MKQRPHIIDG 90
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 67.4 bits (163), Expect = 5e-11, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR 176
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D+ L FS + + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D T +++GFGFV++ + ++ +A EMN
Sbjct: 219 SVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D T +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 66.6 bits (161), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DEY--GSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSR 176
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + L KVV D+ ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D+ L FS + + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + +++GFGFV++ + ++ +A EMN
Sbjct: 219 SVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMN 252
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y + KV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 66.2 bits (160), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + + ++ L TFS + + L KV
Sbjct: 73 NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVAC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++GFGFV F+ + +A MN +FVG K+R
Sbjct: 133 DE--HGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSR 176
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 85 N---------------------------------DDFR------LFCGDLGNDVTDELLI 105
N D R L+ +L + + D+ L
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS Y AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L DV ++ L FS++ L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+RD + ++ FGFV+F+ ++ +A MN
Sbjct: 219 SVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
>sp|Q5JQF8|PAP1M_HUMAN Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A
PE=2 SV=1
Length = 200
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +LG + ++ L FS + + L KV
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVAC 123
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D++ KG+GFV F+ + RA MN + +FVG K+
Sbjct: 124 DEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSH 167
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N L+ +L + + DE L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ FS + + AKV+ + ++KGFGFV F P++ +A EMN
Sbjct: 312 KAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RD T+ + + +V+F+ +D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L T S + + L VV
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ N +KG+GFV F+ + RA K+MN +FVG K+R
Sbjct: 133 DE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ + +++F+ P D RA M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N + +F +L + ++ L TFS + + L KVV
Sbjct: 73 NFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC 132
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D+ + ++G+GFV F+ + RA + MN +FVG K+R
Sbjct: 133 DE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSR 176
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G + G D+ D+ L FS + + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + +++GFGFV++ + ++ +A EMN
Sbjct: 219 SVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N L+ +L + + D+ L
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLR 311
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ F Y + AKV+ + +KGFGFV F P++ +A EMN
Sbjct: 312 KEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMN 354
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 19/136 (13%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ------ 75
D ++F G L + TD+ L F ++ L V+RD T +++GFGF++FK+P+
Sbjct: 162 DGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Query: 76 -----------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 122
D RA +E ++F G + D T+E F+++ L A ++ D
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMD 281
Query: 123 KRTNKTKGFGFVSFKD 138
K T + +GFGFV++++
Sbjct: 282 KDTGRPRGFGFVTYEN 297
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+D ++F G L + TD+ L F ++ L V+RD T +++GFGF++FK+P+
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
E E ++F G + D T+E F+++ L A ++ DK T + +GFGFV++++
Sbjct: 242 EQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 19/132 (14%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ-------- 75
++F G L D T++ L F KY + K+++D T +++GFGF+SF+ P
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 76 ---------DFIRA--NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
D RA E + ++F G +G DV + FS++ + + A+++ DK
Sbjct: 220 QHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 279
Query: 125 TNKTKGFGFVSF 136
T +++GFGFV++
Sbjct: 280 TGQSRGFGFVTY 291
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +D L+ G+L +T+++L + F K++ DK NK + FV + D
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDAN 129
Query: 79 RANKEMN-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
A + +N D F LF GDL +V DE L F +PS+L
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL 189
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
V+ D +T ++G+GFVSF D A M
Sbjct: 190 SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL R FS L ++ RD+ T ++ G+ +V+F D +A M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ L FS + L +KV+
Sbjct: 72 NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMS 131
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN----EFPHLFVGDLKTR 163
D + +KG+ FV F++ RA +EMN + +FVG K R
Sbjct: 132 DDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNR 175
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 42/165 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L KV+ D + K+KGFGFVSF + +A +EM
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 85 N---------------------------------------DDFRLFCGDLGNDVTDELLI 105
N +L+ +L + + DE L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS + S + KV++++ ++KGFG + F P+D +A EMN
Sbjct: 311 NEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMN 353
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 32/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + L +KV+ D + +KG+ FV F++ RA +EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 85 NDDF----RLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N ++F G + G D+ DE L FSKY L
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV+ D + K+KGFGFVSF + +A +EMN
Sbjct: 218 SVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMN 251
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ +L + + DE L FS + S + KV++++ ++KGFG + F P+D +A E
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 84 MN 85
MN
Sbjct: 352 MN 353
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VTD L F + + + +V RD T ++ G+G+V+F +PQD RA +E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 85 N-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +F +L + + L TFS + + + KV
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D + ++KG+GFV + + + +A +++N
Sbjct: 158 DS-SGQSKGYGFVQYANEESAQKAIEKLN 185
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VTD L F + + + +V RD T ++ G+G+V+F +PQD RA +E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 150 NEFP 153
N P
Sbjct: 98 NYIP 101
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 41/165 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L TD+ L F +Y A V++D K+KGFGFV+F++ D RA + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 85 N------------------------------------DDFR---LFCGDLGNDVTDELLI 105
N D F+ L+ +L ++DE L
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS + + +KV+RD +KG GFV+F P++ A +++
Sbjct: 336 EIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLS 379
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 29/153 (18%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + + KV D + ++KG+GFV + + + +A +++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 85 N----DDFRLFCG-----------------------DLGNDVTDELLIRTFSKYPSFLKA 117
N +D +++ G +L TD+ L F +Y A
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 244
Query: 118 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
V++D K+KGFGFV+F++ D RA + +N
Sbjct: 245 VVMKDGE-GKSKGFGFVNFENADDAARAVESLN 276
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K+ + L+ +L ++DE L FS + + +KV+RD +KG GFV+F
Sbjct: 308 LKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFA 366
Query: 73 DPQDFIRANKEMN 85
P++ A +++
Sbjct: 367 TPEEATEAMSQLS 379
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 79/206 (38%), Gaps = 80/206 (38%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ ++ N+VTDE F+K+ + + RD+ K++GFGFV+F + +A E+
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 85 N-DDFR--------------------------------------LFCGDLGNDVTDELLI 105
N DFR L+ +LG+DV D+ L
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLR 361
Query: 106 RTFSKYPSFLKAKVVR----------------------------------------DKRT 125
FS+Y AKV+R D++
Sbjct: 362 AMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKL 421
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMNE 151
K+KGFGFV F +P D +A EMN+
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVTEMNQ 447
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L VT+ +L FS+ S +V RD T ++ G+ +V++ D +A +E+
Sbjct: 62 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 121
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +F +L + ++ L TF+ + + L KV +
Sbjct: 122 NYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQ 181
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D+ N +KG+GFV ++ + +A K +N
Sbjct: 182 DEHGN-SKGYGFVHYETDEAASQAIKHVN 209
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 31/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK-- 82
+F +L + ++ L TF+ + + L KV +D+ N +KG+GFV ++ + +A K
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHV 208
Query: 83 --------------------------EMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFL 115
EM +F ++ ++ N+VTDE F+K+
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVT 268
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+ + RD+ K++GFGFV+F + +A E+N
Sbjct: 269 SSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELN 302
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 42/184 (22%)
Query: 8 PISSWIKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P I K E + +F ++ ++ + TDE + FS+Y + A + +D K KGF
Sbjct: 215 PKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGF 273
Query: 67 GFVSFKDPQDFIRANKEMN----------------------------DDFRL-------- 90
GFV+F D +A +E+N + +RL
Sbjct: 274 GFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQG 333
Query: 91 ---FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
F +L + + DE L F+ Y + A+V+RD+ N +KGFGFV F P++ +A
Sbjct: 334 VNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKAMT 392
Query: 148 EMNE 151
E N+
Sbjct: 393 EKNQ 396
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 24/155 (15%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ N+ L+ G+L ++T+ LL FS +V RD T + G+ +V++ D +
Sbjct: 46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGK 105
Query: 79 RANKEMN-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFL 115
+A +E+N +F +L + ++ L TFS + L
Sbjct: 106 KAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVL 165
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
KV D+ N ++GFGFV FK+ D A + +N
Sbjct: 166 SCKVALDENGN-SRGFGFVHFKEESDAKDAIEAVN 199
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 41/166 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ ++ ++ TDE F+K+ + A + +D K KGFGFV+++ +D ++A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
ND LF +L + V DE L
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
F+ Y + AKV+R + K+KGFGFV F P++ +A E N+
Sbjct: 340 EEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQ 384
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 24/137 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V++ L FS S +V RD T + G+ +V+F D + +A +++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 85 N-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +F +L D+ ++ L TFS + L +K+
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIAT 159
Query: 122 DKRTNKTKGFGFVSFKD 138
D+ K+KGFGFV F++
Sbjct: 160 DE-NGKSKGFGFVHFEE 175
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 41/165 (24%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L ++TD+ L +TF KY A V++D+ N ++ FGFV+F P+ A ++M
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 85 N---------------------DDFR------------------LFCGDLGNDVTDELLI 105
N ++ R L+ +L + V DE L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 106 RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS+Y + KV+ + + ++GFGFV++ +P++ + A KEMN
Sbjct: 360 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMN 403
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 31/155 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KV D ++KG+GFV F+ + A ++
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 85 N----DDFRLFCG-------------------------DLGNDVTDELLIRTFSKYPSFL 115
N +D ++F G +L ++TD+ L +TF KY
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDIS 266
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
A V++D+ N ++ FGFV+F P+ A ++MN
Sbjct: 267 SAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMN 300
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 29/166 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V + L+ F++ +V RD T+++ G+ +V+F +P+D RA + +
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 85 N-----------------------DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +F +L + ++ L TFS + + L KV
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAM 179
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
D ++KG+GFV F+ + A ++N +FVG R
Sbjct: 180 DV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR 224
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 38/168 (22%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN------------------------------------DDFRLFCGDLGNDVTD 101
A MN D F +F GDL ++T
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E + F+ + A+VV+D T K+KG+GFVSF + D A ++M
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 49/184 (26%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEMNDDF----------------------------------------- 88
SF + D A ++M +
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPN 212
Query: 89 --RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
++CG + + +T++L+ +TFS + ++ +V D KG+ FV F + A
Sbjct: 213 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAI 266
Query: 147 KEMN 150
+N
Sbjct: 267 VSVN 270
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ G+L DVT+ L+++ FS+ K++ D N + FV F + + A M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66
Query: 150 N 150
N
Sbjct: 67 N 67
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 38/168 (22%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN------------------------------------DDFRLFCGDLGNDVTD 101
A MN D F +F GDL ++T
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
E + F+ + A+VV+D T K+KG+GFVSF + D A ++M
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 49/184 (26%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEMNDDF----------------------------------------- 88
SF + D A ++M +
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPS 212
Query: 89 --RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
++CG + + +T++L+ +TFS + ++ +V D KG+ FV F + A
Sbjct: 213 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 147 KEMN 150
+N
Sbjct: 267 VSVN 270
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ G+L DVT+ L+++ FS+ K++ D N + FV F + + A M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 66
Query: 150 N 150
N
Sbjct: 67 N 67
>sp|P38760|MIP6_YEAST RNA-binding protein MIP6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MIP6 PE=1 SV=1
Length = 659
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
G + +I KT + + LF G+L + VT+E+L + F +Y SF AKV RD T K+ G+
Sbjct: 98 GSVQKYITKTSKTNS---LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGY 154
Query: 67 GFVSFKDPQDFIRANKEMNDDFRLFCGD 94
G+++FKD D A KE N + +F G
Sbjct: 155 GYLNFKDKNDAESARKEFN--YTVFFGQ 180
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF G+L + VT+E+L + F +Y SF AKV RD T K+ G+G+++FKD D A KE
Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172
Query: 150 N 150
N
Sbjct: 173 N 173
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 28/158 (17%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +N + FV F + +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 77 FIRANKEMN-------------------------DDFRLFCGDLGNDVTDELLIRTFSKY 111
A MN + F +F GDL ++T E + F+ +
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
A+VV+D T K+KG+GFVSF + D A M
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 49/173 (28%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D A
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154
Query: 81 NKEMNDDF-------------------------------------------RLFCGDLGN 97
M + ++CG + +
Sbjct: 155 IVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIAS 214
Query: 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+TD+L+ +TFS + ++ +V + KG+ FV F + A +N
Sbjct: 215 GLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN 261
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 24/136 (17%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DV + L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N D +F +L + ++ + TFS + + L KV
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123
Query: 122 DKRTNKTKGFGFVSFK 137
D++ N +KG+GFV F+
Sbjct: 124 DEKGN-SKGYGFVHFE 138
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 36/174 (20%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--------- 75
+F +L + ++ + TFS + + L KV D++ N +KG+GFV F+ +
Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEEAANTSIDKV 150
Query: 76 -------------DFI---RANKEMNDDFRLFCG----DLGNDVTDELLIRTFSKYPSFL 115
FI KE+ + +LF + D DE L F Y
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKIT 210
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRA-----NKEMNEFPHLFVGDLKTRS 164
KV+ K K+KGFGFV+F+ + A K+M E L+V + ++
Sbjct: 211 SYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKA 263
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DV + L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 42/166 (25%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-------- 76
++ + D DE L F Y KV+ K K+KGFGFV+F+ +
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 77 ------------FIRANK------EMNDDFR--------------LFCGDLGNDVTDELL 104
RA K E+ F L+ +L + + D+ L
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS Y + AKV+ D+ ++KGFGFV F + A E+N
Sbjct: 304 RIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELN 348
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 30/156 (19%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TF+ + + L KV +D+ N +KG+GFV ++ + +A K +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 85 N------------------------DDFR-----LFCGDLGNDVTDELLIRTFSKYPSFL 115
N D+ + ++ ++ +VTD+ F KY
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVT 269
Query: 116 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151
+ + RD+ T K++GFGFV+F +D +A +E+NE
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNE 305
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 24/149 (16%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L VT+ +L FS+ S +V RD T ++ G+ +V++ D +A +E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 85 NDDF-----------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121
N +F +L + ++ L TF+ + + L KV +
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQ 182
Query: 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
D+ N +KG+GFV ++ + +A K +N
Sbjct: 183 DENGN-SKGYGFVHYETDEAASQAIKHVN 210
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 85/212 (40%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ ++ +VTD+ F KY + + RD+ T K++GFGFV+F +D +A +E+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 85 NDD---------------------------------------FRLFCGDLGNDVTDELLI 105
N+ L+ +L ++V DE L
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLR 363
Query: 106 RTFSKYPSFLKAKVVRDKRT-------------------NKTK----------------- 129
+ FS++ AKV+RD T NK +
Sbjct: 364 QLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDS 423
Query: 130 ----------GFGFVSFKDPQDFIRANKEMNE 151
GFGFV F +P D +A EMN+
Sbjct: 424 KSKSKLGKSKGFGFVCFANPDDATKAVAEMNQ 455
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 35/166 (21%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E RL+ G++ ++ ++ L ++ + A+V+ DK + +++ FGFV+ K +D
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 80 ANKEMNDD-----------------------------------FRLFCGDLGNDVTDELL 104
+++ND ++++ G+L VT+ELL
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELL 200
Query: 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
FS+ L AKV R T+K+ GFGFVSF ++ A + +N
Sbjct: 201 KDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN 246
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E+ ++++ G+L VT+ELL FS+ L AKV R T+K+ GFGFVSF ++
Sbjct: 181 ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEA 240
Query: 80 ANKEMNDDF 88
A + +N+
Sbjct: 241 AIQALNNSV 249
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 16 TCEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+ DEN ++ L+ G+L VT+ + + ++ +K K++R++ T G+ FV F
Sbjct: 83 SSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFA 142
Query: 73 DPQDFIRANKEMND-----------------------------DFRLFCGDLGNDVTDEL 103
P + A MN+ ++ +F GDL +V +
Sbjct: 143 SPHEASSA-MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFD 201
Query: 104 LIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+ F S+Y S AK++ D +TN ++G+GFV F D D A EM
Sbjct: 202 VYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEM 248
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K+ +++ +F GDL +V + + F S+Y S AK++ D +TN ++G+GFV F
Sbjct: 177 EKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Query: 73 DPQDFIRANKEMNDDFRLFCGD 94
D D A EM CGD
Sbjct: 237 DENDQKSALAEMQGQ---ICGD 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,682,103
Number of Sequences: 539616
Number of extensions: 2582777
Number of successful extensions: 8029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 5899
Number of HSP's gapped (non-prelim): 1776
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)