Query psy7847
Match_columns 170
No_of_seqs 115 out of 1416
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 20:20:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8.6E-33 1.9E-37 215.5 20.4 149 18-169 103-274 (346)
2 TIGR01645 half-pint poly-U bin 100.0 2.7E-31 5.9E-36 217.5 19.4 147 20-169 105-283 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-30 4.5E-35 203.7 20.2 150 17-169 84-348 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-30 6.9E-35 202.7 19.6 145 21-168 2-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-29 4.8E-34 204.2 20.9 146 19-168 86-264 (457)
6 KOG0144|consensus 100.0 2.2E-30 4.9E-35 199.4 12.7 149 20-169 32-205 (510)
7 KOG0148|consensus 100.0 3.1E-29 6.8E-34 183.1 16.3 141 20-169 60-237 (321)
8 KOG0117|consensus 100.0 1.5E-28 3.3E-33 189.9 16.3 152 5-169 68-330 (506)
9 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-28 1.3E-32 200.2 18.1 140 24-167 2-164 (562)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 2.8E-27 6.1E-32 193.6 19.8 160 6-169 44-221 (578)
11 TIGR01628 PABP-1234 polyadenyl 100.0 4.2E-27 9.2E-32 195.2 19.6 145 20-169 176-363 (562)
12 KOG0131|consensus 99.9 1.9E-27 4.1E-32 164.8 11.3 148 19-169 6-176 (203)
13 KOG0145|consensus 99.9 1.2E-26 2.6E-31 169.1 14.4 156 11-169 116-357 (360)
14 KOG0145|consensus 99.9 2.6E-26 5.5E-31 167.4 13.3 145 23-168 42-207 (360)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.6E-25 3.6E-30 183.7 19.4 140 19-168 172-373 (509)
16 KOG0127|consensus 99.9 6.1E-25 1.3E-29 173.8 14.9 143 23-169 6-195 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.6E-24 5.6E-29 175.4 18.4 136 21-169 1-173 (481)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.2E-24 7E-29 176.1 18.8 147 20-169 293-501 (509)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 7E-24 1.5E-28 172.9 19.9 140 20-169 273-479 (481)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 8.7E-24 1.9E-28 173.2 17.0 138 21-169 137-306 (578)
21 KOG0127|consensus 99.9 2.2E-23 4.8E-28 165.0 15.7 146 22-168 117-376 (678)
22 KOG0124|consensus 99.9 6.4E-24 1.4E-28 161.4 11.2 142 23-167 114-287 (544)
23 KOG0148|consensus 99.9 4.2E-24 9.1E-29 156.4 8.7 140 19-170 3-142 (321)
24 KOG0146|consensus 99.9 8.6E-23 1.9E-27 149.6 11.3 150 16-169 13-364 (371)
25 TIGR01622 SF-CC1 splicing fact 99.9 1.9E-21 4.1E-26 157.9 18.7 140 22-168 186-446 (457)
26 KOG0109|consensus 99.9 1.8E-22 3.9E-27 149.2 9.0 128 23-169 3-149 (346)
27 KOG0123|consensus 99.9 3.2E-21 6.9E-26 151.5 15.5 132 24-167 3-150 (369)
28 KOG0144|consensus 99.9 9.9E-22 2.1E-26 151.9 9.6 77 89-168 426-502 (510)
29 KOG0147|consensus 99.9 9.4E-22 2E-26 155.9 7.8 148 17-168 174-356 (549)
30 KOG4205|consensus 99.8 1.5E-20 3.4E-25 143.5 10.1 145 21-169 5-175 (311)
31 KOG0110|consensus 99.8 1.4E-19 3E-24 147.2 10.8 144 23-169 516-692 (725)
32 KOG0123|consensus 99.8 6.2E-19 1.3E-23 138.7 13.6 138 24-168 78-244 (369)
33 TIGR01645 half-pint poly-U bin 99.8 2E-17 4.3E-22 136.4 19.2 66 21-86 203-268 (612)
34 PLN03134 glycine-rich RNA-bind 99.8 4.3E-18 9.2E-23 117.9 10.6 80 87-169 34-113 (144)
35 KOG4211|consensus 99.8 3.5E-17 7.5E-22 128.7 14.6 143 18-168 6-180 (510)
36 KOG0105|consensus 99.7 2.6E-16 5.7E-21 110.0 11.6 123 20-152 4-173 (241)
37 KOG4212|consensus 99.7 6.7E-16 1.4E-20 120.2 14.9 140 22-166 44-290 (608)
38 PF00076 RRM_1: RNA recognitio 99.7 2E-16 4.3E-21 96.0 9.1 70 90-163 1-70 (70)
39 KOG4206|consensus 99.7 1.8E-15 3.9E-20 108.8 14.7 140 20-169 7-221 (221)
40 KOG0147|consensus 99.7 5.2E-16 1.1E-20 123.5 11.1 137 23-167 279-525 (549)
41 KOG0121|consensus 99.7 2.5E-16 5.5E-21 103.8 7.6 85 80-167 29-113 (153)
42 KOG1457|consensus 99.7 1.7E-15 3.8E-20 108.7 12.5 134 15-152 27-271 (284)
43 TIGR01659 sex-lethal sex-letha 99.7 4.5E-16 9.8E-21 121.8 10.3 81 86-169 106-186 (346)
44 KOG0122|consensus 99.6 1E-15 2.3E-20 111.0 9.4 81 87-170 189-269 (270)
45 PLN03134 glycine-rich RNA-bind 99.6 2.3E-15 5.1E-20 104.2 9.5 68 20-87 32-99 (144)
46 PF14259 RRM_6: RNA recognitio 99.6 5.2E-15 1.1E-19 90.1 9.3 70 90-163 1-70 (70)
47 KOG0129|consensus 99.6 1.3E-14 2.9E-19 115.0 13.4 130 18-148 255-432 (520)
48 KOG0110|consensus 99.6 1.4E-14 3.1E-19 118.3 12.1 141 19-168 382-596 (725)
49 PF00076 RRM_1: RNA recognitio 99.6 9.6E-15 2.1E-19 88.5 7.8 61 25-86 1-61 (70)
50 KOG0125|consensus 99.6 6.5E-15 1.4E-19 111.0 7.6 79 86-169 95-173 (376)
51 KOG1548|consensus 99.6 4.7E-13 1E-17 101.7 16.7 142 19-168 131-350 (382)
52 PLN03120 nucleic acid binding 99.6 2.7E-14 5.8E-19 106.1 9.7 75 87-168 4-78 (260)
53 smart00362 RRM_2 RNA recogniti 99.5 9.5E-14 2.1E-18 83.8 9.1 72 89-165 1-72 (72)
54 KOG0149|consensus 99.5 3.1E-14 6.7E-19 103.0 7.2 65 22-86 12-76 (247)
55 KOG0122|consensus 99.5 8.5E-14 1.8E-18 101.2 9.1 67 21-87 188-254 (270)
56 KOG0113|consensus 99.5 6.9E-14 1.5E-18 104.2 8.7 78 88-168 102-179 (335)
57 KOG0107|consensus 99.5 6.4E-14 1.4E-18 97.2 7.7 76 85-168 8-83 (195)
58 smart00360 RRM RNA recognition 99.5 1.4E-13 3.1E-18 82.6 8.4 71 92-165 1-71 (71)
59 KOG0124|consensus 99.5 5.9E-13 1.3E-17 102.0 13.1 66 20-85 208-273 (544)
60 KOG0131|consensus 99.5 4E-14 8.7E-19 98.7 6.2 83 83-168 5-87 (203)
61 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.6E-18 83.4 7.6 61 25-86 1-61 (70)
62 KOG0149|consensus 99.5 6.4E-14 1.4E-18 101.4 6.6 76 88-167 13-88 (247)
63 KOG0106|consensus 99.5 8.5E-14 1.8E-18 100.9 6.0 126 24-168 3-169 (216)
64 KOG0130|consensus 99.5 1.5E-13 3.3E-18 91.5 6.6 78 88-168 73-150 (170)
65 KOG0111|consensus 99.5 5E-14 1.1E-18 101.1 4.4 82 85-169 8-89 (298)
66 KOG0126|consensus 99.5 8.4E-15 1.8E-19 102.1 0.4 80 84-166 32-111 (219)
67 KOG0114|consensus 99.5 5.3E-13 1.1E-17 85.1 8.5 76 87-168 18-93 (124)
68 cd00590 RRM RRM (RNA recogniti 99.5 1.1E-12 2.4E-17 79.4 9.6 74 89-166 1-74 (74)
69 PLN03213 repressor of silencin 99.5 3.3E-13 7.2E-18 106.9 8.8 76 87-169 10-87 (759)
70 KOG4207|consensus 99.4 1.7E-13 3.6E-18 97.5 5.9 81 85-168 11-91 (256)
71 KOG4212|consensus 99.4 3.7E-12 8.1E-17 99.6 13.9 71 89-167 538-608 (608)
72 COG0724 RNA-binding proteins ( 99.4 3.5E-12 7.6E-17 95.8 13.0 126 22-147 115-285 (306)
73 KOG1365|consensus 99.4 1.5E-12 3.3E-17 100.2 10.9 140 21-165 160-357 (508)
74 KOG0117|consensus 99.4 2E-12 4.3E-17 101.2 11.6 119 35-168 44-162 (506)
75 PLN03121 nucleic acid binding 99.4 1.4E-12 3E-17 95.7 9.5 74 86-166 4-77 (243)
76 KOG0108|consensus 99.4 6E-13 1.3E-17 106.2 8.0 79 88-169 19-97 (435)
77 PF13893 RRM_5: RNA recognitio 99.4 2.1E-12 4.5E-17 75.2 8.2 56 104-167 1-56 (56)
78 KOG0114|consensus 99.4 1.4E-12 3.1E-17 83.1 7.9 70 15-87 11-80 (124)
79 COG0724 RNA-binding proteins ( 99.4 1.8E-12 4E-17 97.3 9.5 79 87-168 115-193 (306)
80 PLN03120 nucleic acid binding 99.4 3.7E-12 8.1E-17 94.8 8.6 61 22-86 4-64 (260)
81 KOG1190|consensus 99.4 2.1E-11 4.6E-16 94.6 12.7 139 18-168 146-371 (492)
82 smart00361 RRM_1 RNA recogniti 99.3 6.5E-12 1.4E-16 76.5 7.6 62 101-165 2-70 (70)
83 KOG1190|consensus 99.3 3.9E-11 8.5E-16 93.1 13.4 137 22-170 297-491 (492)
84 KOG0120|consensus 99.3 1.1E-11 2.4E-16 99.8 10.8 148 18-168 285-490 (500)
85 KOG0113|consensus 99.3 6.7E-12 1.4E-16 93.8 8.6 67 21-87 100-166 (335)
86 PLN03121 nucleic acid binding 99.3 7.4E-12 1.6E-16 91.9 8.6 69 21-93 4-76 (243)
87 KOG4454|consensus 99.3 4.1E-13 9E-18 96.3 2.0 133 17-152 4-148 (267)
88 smart00362 RRM_2 RNA recogniti 99.3 1.4E-11 3E-16 74.1 8.2 61 24-86 1-61 (72)
89 KOG0126|consensus 99.3 1.8E-13 3.9E-18 95.5 -0.7 83 10-95 26-112 (219)
90 KOG0415|consensus 99.3 4.1E-12 9E-17 97.0 6.2 81 86-169 238-318 (479)
91 KOG0121|consensus 99.3 6.4E-12 1.4E-16 83.1 6.1 71 17-87 31-101 (153)
92 KOG0226|consensus 99.3 3.5E-12 7.6E-17 93.4 4.8 140 23-166 97-266 (290)
93 smart00360 RRM RNA recognition 99.3 2.7E-11 5.8E-16 72.5 7.6 60 27-86 1-60 (71)
94 KOG0125|consensus 99.3 1.7E-11 3.6E-16 92.8 8.0 71 15-87 89-159 (376)
95 KOG0112|consensus 99.3 5.2E-12 1.1E-16 105.9 4.7 156 3-168 353-529 (975)
96 KOG4207|consensus 99.2 2E-11 4.3E-16 87.1 6.4 71 16-86 7-77 (256)
97 KOG0105|consensus 99.2 2.3E-11 4.9E-16 85.4 6.6 78 86-169 5-82 (241)
98 KOG0128|consensus 99.2 5.5E-13 1.2E-17 111.1 -1.9 141 22-166 667-811 (881)
99 KOG0130|consensus 99.2 2.9E-11 6.4E-16 80.7 6.4 66 21-86 71-136 (170)
100 cd00590 RRM RRM (RNA recogniti 99.2 1.5E-10 3.3E-15 69.8 8.3 63 24-87 1-63 (74)
101 KOG1456|consensus 99.2 3E-09 6.4E-14 82.1 16.6 144 19-169 284-490 (494)
102 PLN03213 repressor of silencin 99.2 8.2E-11 1.8E-15 93.5 8.4 65 19-87 7-73 (759)
103 KOG0107|consensus 99.2 5.5E-11 1.2E-15 82.7 6.5 63 21-88 9-71 (195)
104 KOG4211|consensus 99.2 8.4E-10 1.8E-14 87.6 13.2 137 20-163 101-351 (510)
105 KOG0146|consensus 99.2 9.4E-11 2E-15 86.7 6.5 83 86-169 18-100 (371)
106 KOG0108|consensus 99.1 4.1E-10 8.8E-15 90.1 9.1 71 23-93 19-93 (435)
107 KOG4208|consensus 99.1 3.4E-10 7.4E-15 80.7 7.6 77 88-167 50-127 (214)
108 KOG4206|consensus 99.1 3.7E-10 7.9E-15 81.6 7.5 80 84-169 6-89 (221)
109 KOG0132|consensus 99.1 3.4E-10 7.4E-15 94.0 7.5 74 87-169 421-494 (894)
110 KOG0111|consensus 99.0 3.6E-10 7.9E-15 81.4 5.4 74 19-92 7-84 (298)
111 KOG4660|consensus 99.0 5E-09 1.1E-13 84.4 11.3 69 13-86 66-134 (549)
112 KOG1456|consensus 99.0 2.9E-08 6.3E-13 76.7 14.7 141 18-170 27-199 (494)
113 KOG4208|consensus 99.0 3.3E-09 7.1E-14 75.8 8.8 88 21-108 48-141 (214)
114 KOG0120|consensus 99.0 1.1E-09 2.4E-14 88.3 7.3 140 20-168 173-367 (500)
115 KOG0109|consensus 99.0 8.8E-10 1.9E-14 82.4 5.3 70 88-168 3-72 (346)
116 smart00361 RRM_1 RNA recogniti 98.9 4E-09 8.7E-14 64.1 6.6 52 36-87 2-60 (70)
117 PF04059 RRM_2: RNA recognitio 98.9 1.5E-08 3.3E-13 65.0 9.2 81 88-168 2-85 (97)
118 KOG0153|consensus 98.9 4.8E-09 1E-13 80.1 7.4 74 88-169 229-302 (377)
119 KOG0533|consensus 98.9 9.2E-09 2E-13 76.4 8.3 81 85-169 81-161 (243)
120 KOG4210|consensus 98.8 4.4E-09 9.5E-14 80.5 5.0 144 21-168 87-262 (285)
121 KOG0226|consensus 98.7 2.7E-08 5.8E-13 73.3 6.2 86 9-97 175-262 (290)
122 KOG0415|consensus 98.7 2.5E-08 5.5E-13 76.6 5.9 82 19-101 236-321 (479)
123 KOG1365|consensus 98.7 3.5E-07 7.6E-12 71.1 11.4 137 22-163 60-236 (508)
124 KOG2193|consensus 98.7 2.8E-09 6.1E-14 83.4 -0.2 129 24-166 3-153 (584)
125 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.6E-12 60.2 7.8 64 23-86 2-67 (97)
126 KOG4661|consensus 98.7 7.2E-08 1.6E-12 78.3 7.1 77 88-167 406-482 (940)
127 PF13893 RRM_5: RNA recognitio 98.6 1.5E-07 3.2E-12 54.4 6.1 44 39-87 1-44 (56)
128 KOG1548|consensus 98.6 2.7E-07 5.8E-12 70.8 7.8 77 88-168 135-219 (382)
129 KOG4307|consensus 98.5 9E-07 1.9E-11 73.5 10.5 75 89-166 869-943 (944)
130 KOG4205|consensus 98.5 7.6E-08 1.6E-12 74.2 4.1 78 86-167 5-82 (311)
131 KOG4660|consensus 98.5 6.6E-08 1.4E-12 78.0 3.8 71 85-163 73-143 (549)
132 KOG0116|consensus 98.5 1.7E-07 3.8E-12 74.8 6.0 71 22-92 288-361 (419)
133 KOG0151|consensus 98.5 2.3E-07 5.1E-12 76.9 6.5 78 87-167 174-254 (877)
134 KOG0116|consensus 98.5 3.1E-07 6.7E-12 73.4 7.0 77 88-168 289-365 (419)
135 KOG4307|consensus 98.5 3.6E-07 7.9E-12 75.7 7.2 142 20-166 309-510 (944)
136 KOG0132|consensus 98.5 2.3E-07 5E-12 77.6 6.0 59 22-86 421-479 (894)
137 KOG4209|consensus 98.5 2.5E-07 5.4E-12 68.7 5.6 79 85-167 99-177 (231)
138 KOG1457|consensus 98.5 1.5E-06 3.2E-11 63.2 8.5 82 87-168 34-116 (284)
139 KOG0106|consensus 98.4 1.9E-07 4.2E-12 68.0 3.6 69 89-168 3-71 (216)
140 KOG4676|consensus 98.4 1.6E-07 3.5E-12 73.0 2.6 124 23-151 8-210 (479)
141 KOG0533|consensus 98.3 1.9E-06 4.2E-11 64.1 7.1 68 18-86 79-146 (243)
142 KOG4661|consensus 98.3 1.5E-06 3.3E-11 70.8 6.3 65 22-86 405-469 (940)
143 KOG0153|consensus 98.3 4E-06 8.6E-11 64.5 7.3 60 21-86 227-286 (377)
144 KOG4454|consensus 98.2 6E-07 1.3E-11 65.0 2.0 75 87-166 9-83 (267)
145 KOG0151|consensus 98.2 5.6E-06 1.2E-10 69.0 7.5 66 22-87 174-242 (877)
146 KOG4209|consensus 98.2 4E-06 8.7E-11 62.3 5.2 68 18-86 97-164 (231)
147 PF08777 RRM_3: RNA binding mo 98.1 1.2E-05 2.6E-10 52.6 6.4 72 89-166 3-76 (105)
148 PF11608 Limkain-b1: Limkain b 98.1 4.8E-05 1E-09 47.1 7.7 68 88-168 3-75 (90)
149 KOG1995|consensus 97.9 1E-05 2.2E-10 62.5 3.7 82 85-169 64-153 (351)
150 COG5175 MOT2 Transcriptional r 97.9 4E-05 8.7E-10 59.0 6.6 78 88-168 115-201 (480)
151 PF08777 RRM_3: RNA binding mo 97.9 5.2E-05 1.1E-09 49.6 5.9 57 23-85 2-58 (105)
152 KOG0128|consensus 97.7 1.8E-06 4E-11 73.0 -3.8 141 21-164 570-741 (881)
153 KOG4849|consensus 97.6 4.8E-05 1E-09 58.8 3.5 64 22-85 80-145 (498)
154 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00049 1.1E-08 39.2 5.4 52 23-81 2-53 (53)
155 KOG0129|consensus 97.5 0.00046 9.9E-09 55.9 6.9 64 19-82 367-431 (520)
156 KOG2314|consensus 97.4 0.00039 8.4E-09 57.0 6.2 74 87-164 58-138 (698)
157 PF08675 RNA_bind: RNA binding 97.4 0.0013 2.9E-08 40.7 7.0 60 17-85 4-63 (87)
158 KOG1855|consensus 97.3 0.00047 1E-08 54.7 5.4 64 88-151 232-308 (484)
159 KOG2314|consensus 97.3 0.00099 2.1E-08 54.7 7.3 75 18-93 54-139 (698)
160 PF11608 Limkain-b1: Limkain b 97.3 0.002 4.2E-08 40.1 7.0 64 23-96 3-75 (90)
161 KOG3152|consensus 97.3 0.00018 4E-09 53.4 2.5 71 88-161 75-157 (278)
162 KOG4849|consensus 97.3 0.00022 4.8E-09 55.3 3.0 71 86-159 79-151 (498)
163 KOG1995|consensus 97.3 0.001 2.2E-08 51.7 6.5 71 17-87 61-139 (351)
164 KOG4210|consensus 97.2 0.00035 7.6E-09 53.7 3.5 62 22-83 184-246 (285)
165 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.0013 2.7E-08 37.5 4.6 52 88-146 2-53 (53)
166 KOG1855|consensus 97.1 0.001 2.2E-08 52.9 5.1 73 14-86 223-308 (484)
167 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0045 9.7E-08 40.1 6.1 75 88-167 7-89 (100)
168 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0015 3.2E-08 46.8 4.1 67 20-86 5-77 (176)
169 KOG1996|consensus 96.9 0.0039 8.5E-08 47.4 6.4 64 101-167 300-364 (378)
170 PF10309 DUF2414: Protein of u 96.9 0.011 2.3E-07 34.8 6.8 55 22-84 5-62 (62)
171 KOG2202|consensus 96.8 0.00061 1.3E-08 50.7 1.7 63 102-168 83-146 (260)
172 KOG4676|consensus 96.7 0.0025 5.5E-08 50.2 4.1 78 88-168 8-88 (479)
173 KOG2416|consensus 96.5 0.0026 5.5E-08 52.7 3.2 76 87-168 444-520 (718)
174 PF08952 DUF1866: Domain of un 96.4 0.02 4.3E-07 39.4 6.6 56 102-169 51-106 (146)
175 COG5175 MOT2 Transcriptional r 96.1 0.016 3.5E-07 45.0 5.4 65 23-87 115-188 (480)
176 KOG0115|consensus 96.0 0.009 2E-07 44.6 3.8 63 88-151 32-94 (275)
177 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.013 2.8E-07 42.0 4.5 65 87-151 7-77 (176)
178 PF07576 BRAP2: BRCA1-associat 96.0 0.14 3E-06 33.8 8.9 64 22-87 13-77 (110)
179 KOG3152|consensus 96.0 0.005 1.1E-07 46.0 2.2 66 22-87 74-151 (278)
180 KOG2068|consensus 95.9 0.0052 1.1E-07 47.5 2.1 76 89-168 79-161 (327)
181 PF08675 RNA_bind: RNA binding 95.8 0.079 1.7E-06 33.0 6.5 54 89-151 11-64 (87)
182 KOG2193|consensus 95.7 0.015 3.1E-07 46.6 4.0 72 89-168 3-74 (584)
183 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.064 1.4E-06 34.7 6.1 62 21-83 5-73 (100)
184 PF15023 DUF4523: Protein of u 95.4 0.093 2E-06 36.0 6.4 70 89-169 88-161 (166)
185 PF10309 DUF2414: Protein of u 95.3 0.12 2.7E-06 30.3 6.0 53 89-149 7-62 (62)
186 PF04847 Calcipressin: Calcipr 95.2 0.063 1.4E-06 38.7 5.6 61 100-169 8-70 (184)
187 KOG0115|consensus 94.9 0.04 8.6E-07 41.3 3.8 62 23-85 32-93 (275)
188 KOG0804|consensus 94.7 0.16 3.4E-06 41.2 7.0 66 20-87 72-138 (493)
189 PF11767 SET_assoc: Histone ly 94.7 0.22 4.8E-06 29.6 6.0 54 98-163 11-64 (66)
190 KOG0112|consensus 94.2 0.061 1.3E-06 46.8 3.9 61 20-86 453-513 (975)
191 KOG2416|consensus 94.2 0.051 1.1E-06 45.3 3.3 63 18-86 440-503 (718)
192 PF07576 BRAP2: BRCA1-associat 94.0 0.75 1.6E-05 30.3 8.0 63 89-153 15-78 (110)
193 KOG2135|consensus 93.9 0.033 7.1E-07 45.2 1.8 70 90-169 375-445 (526)
194 KOG4574|consensus 93.0 0.07 1.5E-06 46.3 2.3 73 89-168 300-372 (1007)
195 KOG2591|consensus 92.8 0.25 5.4E-06 41.1 5.2 71 88-166 176-248 (684)
196 PF15023 DUF4523: Protein of u 92.7 0.29 6.3E-06 33.7 4.5 59 21-86 85-147 (166)
197 KOG1996|consensus 91.5 0.69 1.5E-05 35.6 5.8 50 37-86 301-351 (378)
198 KOG2202|consensus 91.0 0.092 2E-06 39.4 0.8 50 37-87 83-133 (260)
199 KOG2591|consensus 90.7 1.4 3E-05 36.9 7.1 57 21-84 174-232 (684)
200 PF07292 NID: Nmi/IFP 35 domai 90.2 0.39 8.5E-06 30.3 3.0 42 67-108 1-73 (88)
201 KOG0804|consensus 89.5 1.2 2.7E-05 36.2 5.9 68 87-159 74-142 (493)
202 KOG2068|consensus 88.6 0.43 9.3E-06 37.2 2.7 65 22-86 77-147 (327)
203 PF03880 DbpA: DbpA RNA bindin 87.7 2.9 6.4E-05 25.2 5.6 59 97-167 11-74 (74)
204 KOG4483|consensus 86.4 4.9 0.00011 32.5 7.4 79 20-107 389-468 (528)
205 KOG4285|consensus 84.9 1.9 4.1E-05 33.4 4.4 61 89-160 199-259 (350)
206 KOG2253|consensus 82.3 1.7 3.6E-05 37.1 3.5 57 20-85 38-94 (668)
207 PF11767 SET_assoc: Histone ly 79.4 11 0.00023 22.4 5.6 46 33-87 11-56 (66)
208 KOG4213|consensus 76.3 3.2 6.8E-05 29.8 2.9 59 21-84 110-170 (205)
209 KOG4285|consensus 72.7 25 0.00054 27.5 7.0 55 22-83 197-251 (350)
210 KOG2318|consensus 71.5 21 0.00045 30.4 6.8 118 20-166 172-302 (650)
211 PF08952 DUF1866: Domain of un 71.3 12 0.00027 25.9 4.7 56 37-100 51-109 (146)
212 KOG2253|consensus 70.5 3 6.6E-05 35.6 1.9 72 83-166 36-107 (668)
213 KOG4410|consensus 64.1 28 0.00061 27.0 5.8 48 23-76 331-379 (396)
214 KOG4483|consensus 63.4 15 0.00032 29.8 4.4 57 88-151 392-449 (528)
215 KOG4574|consensus 61.8 3 6.5E-05 36.8 0.3 78 24-108 300-377 (1007)
216 KOG4410|consensus 61.7 20 0.00043 27.8 4.6 46 89-140 332-378 (396)
217 KOG4019|consensus 60.7 8.4 0.00018 27.7 2.4 59 102-169 30-89 (193)
218 PF10567 Nab6_mRNP_bdg: RNA-re 60.3 28 0.00061 27.1 5.2 63 19-81 12-81 (309)
219 TIGR02542 B_forsyth_147 Bacter 59.3 11 0.00024 25.0 2.6 98 30-139 11-129 (145)
220 COG3444 Phosphotransferase sys 59.1 49 0.0011 23.3 5.9 37 62-98 74-110 (159)
221 PF04847 Calcipressin: Calcipr 58.0 30 0.00065 25.0 4.9 45 35-85 8-52 (184)
222 KOG2295|consensus 57.8 1.4 3.1E-05 36.8 -2.1 75 82-159 226-300 (648)
223 KOG1295|consensus 56.9 27 0.00058 28.1 4.8 74 21-96 6-82 (376)
224 COG0445 GidA Flavin-dependent 54.9 54 0.0012 28.1 6.4 57 65-121 237-335 (621)
225 TIGR03636 L23_arch archaeal ri 53.4 50 0.0011 20.2 5.0 52 29-83 20-73 (77)
226 PF07530 PRE_C2HC: Associated 51.8 30 0.00065 20.5 3.5 62 102-169 2-64 (68)
227 KOG2295|consensus 51.8 3.1 6.7E-05 34.9 -1.1 65 22-86 231-295 (648)
228 PRK14548 50S ribosomal protein 50.8 59 0.0013 20.2 5.2 51 30-83 28-80 (84)
229 PF11411 DNA_ligase_IV: DNA li 48.6 14 0.00031 19.0 1.5 16 32-47 19-34 (36)
230 KOG4365|consensus 48.2 3.2 7E-05 33.9 -1.5 76 88-167 4-79 (572)
231 COG5193 LHP1 La protein, small 47.7 10 0.00022 30.7 1.2 60 23-82 175-244 (438)
232 COG5193 LHP1 La protein, small 47.2 9.9 0.00021 30.7 1.1 60 88-147 175-244 (438)
233 PF03439 Spt5-NGN: Early trans 45.6 27 0.00058 21.6 2.7 29 62-90 42-70 (84)
234 PF14893 PNMA: PNMA 45.0 20 0.00044 28.4 2.5 81 22-106 18-105 (331)
235 KOG1295|consensus 44.6 30 0.00065 27.8 3.4 65 87-151 7-74 (376)
236 PF03830 PTSIIB_sorb: PTS syst 44.4 55 0.0012 22.7 4.4 35 64-98 75-109 (151)
237 PF15513 DUF4651: Domain of un 44.2 32 0.00069 20.1 2.6 18 37-54 9-26 (62)
238 TIGR00854 pts-sorbose PTS syst 43.0 1.1E+02 0.0024 21.2 5.7 33 65-97 76-108 (151)
239 PF10567 Nab6_mRNP_bdg: RNA-re 42.1 59 0.0013 25.3 4.5 79 88-167 16-105 (309)
240 cd00001 PTS_IIB_man PTS_IIB, P 41.7 1.2E+02 0.0025 21.1 5.8 34 64-97 74-107 (151)
241 PRK11425 PTS system N-acetylga 41.2 1.2E+02 0.0025 21.3 5.6 32 66-97 78-109 (157)
242 PRK11901 hypothetical protein; 40.8 61 0.0013 25.7 4.4 61 86-151 244-306 (327)
243 TIGR01866 cas_Csn2 CRISPR-asso 40.6 34 0.00073 25.4 3.0 71 27-110 115-186 (216)
244 COG0030 KsgA Dimethyladenosine 40.1 40 0.00087 25.8 3.3 36 23-58 96-131 (259)
245 cd00874 RNA_Cyclase_Class_II R 38.2 2E+02 0.0044 22.8 7.1 105 29-137 119-238 (326)
246 PRK09756 PTS system N-acetylga 37.7 1.4E+02 0.0031 20.9 5.7 33 65-97 80-112 (158)
247 KOG4008|consensus 37.2 32 0.0007 25.9 2.4 34 18-51 36-69 (261)
248 PF03468 XS: XS domain; Inter 37.2 85 0.0018 20.8 4.2 56 89-147 10-75 (116)
249 smart00738 NGN In Spt5p, this 35.4 58 0.0013 20.5 3.2 47 63-109 58-105 (106)
250 PF00564 PB1: PB1 domain; Int 35.2 94 0.002 18.5 4.0 64 94-168 17-83 (84)
251 PF12623 Hen1_L: RNA repair, l 32.8 2.2E+02 0.0047 21.5 6.1 87 22-109 118-208 (245)
252 PF11823 DUF3343: Protein of u 31.4 93 0.002 18.4 3.4 21 131-151 3-23 (73)
253 PRK11901 hypothetical protein; 31.3 2.1E+02 0.0047 22.7 6.1 63 19-86 242-306 (327)
254 KOG4008|consensus 29.3 39 0.00085 25.4 1.7 33 85-117 38-70 (261)
255 PRK08559 nusG transcription an 28.5 1.6E+02 0.0036 20.3 4.7 54 49-111 36-89 (153)
256 PF13046 DUF3906: Protein of u 26.7 1.2E+02 0.0026 17.8 3.1 49 65-134 15-63 (64)
257 COG4010 Uncharacterized protei 26.4 2.3E+02 0.005 19.8 6.1 46 29-84 118-163 (170)
258 smart00596 PRE_C2HC PRE_C2HC d 26.4 1.2E+02 0.0026 18.2 3.1 61 102-168 2-63 (69)
259 PF08206 OB_RNB: Ribonuclease 25.5 15 0.00032 20.9 -0.9 11 128-138 7-17 (58)
260 PHA01632 hypothetical protein 25.4 70 0.0015 18.2 1.9 24 87-110 16-39 (64)
261 KOG2891|consensus 24.6 87 0.0019 24.3 2.9 34 22-55 149-194 (445)
262 PRK00274 ksgA 16S ribosomal RN 24.4 1E+02 0.0023 23.4 3.4 34 24-57 107-140 (272)
263 PF02714 DUF221: Domain of unk 24.2 88 0.0019 24.3 3.0 19 67-85 1-19 (325)
264 COG2088 SpoVG Uncharacterized 22.7 1.2E+02 0.0027 19.1 2.8 54 48-102 2-55 (95)
265 COG0030 KsgA Dimethyladenosine 22.6 1.4E+02 0.0031 22.8 3.7 31 87-117 95-125 (259)
266 PF02617 ClpS: ATP-dependent C 22.6 92 0.002 18.9 2.3 36 129-166 47-82 (82)
267 PF04026 SpoVG: SpoVG; InterP 22.2 1.6E+02 0.0036 18.2 3.4 25 49-73 3-27 (84)
268 PF14111 DUF4283: Domain of un 22.2 1.3E+02 0.0028 20.2 3.3 33 24-56 106-139 (153)
269 PTZ00338 dimethyladenosine tra 22.0 1E+02 0.0022 24.0 2.9 35 24-58 103-137 (294)
270 COG0771 MurD UDP-N-acetylmuram 21.8 2.7E+02 0.0058 23.3 5.4 109 34-149 293-410 (448)
271 PF09707 Cas_Cas2CT1978: CRISP 20.3 2.3E+02 0.0051 17.7 3.9 45 89-136 27-71 (86)
272 TIGR00405 L26e_arch ribosomal 20.2 2.7E+02 0.0058 18.8 4.5 44 62-109 36-79 (145)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.6e-33 Score=215.46 Aligned_cols=149 Identities=26% Similarity=0.411 Sum_probs=138.1
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-----------
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----------- 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----------- 86 (170)
.....++|||+|||+++++++|+++|+.||+|.+++|++++.++.+++||||+|.++++|.+|++.+++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 344678899999999999999999999999999999999988999999999999999999999998875
Q ss_pred ----------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccc
Q psy7847 87 ----------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156 (170)
Q Consensus 87 ----------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 156 (170)
..+|||+|||..+++++|+++|++||.|..+.+++|+.++.++|+|||+|.+.++|++|++.||+ ..
T Consensus 183 ~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng---~~ 259 (346)
T TIGR01659 183 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN---VI 259 (346)
T ss_pred cccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC---Cc
Confidence 24799999999999999999999999999999999988999999999999999999999999999 76
Q ss_pred cCC--eeEEEEeecc
Q psy7847 157 VGD--LKTRSSITLK 169 (170)
Q Consensus 157 ~~~--~~i~v~~~~~ 169 (170)
+.+ ++|+|.++.+
T Consensus 260 ~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 260 PEGGSQPLTVRLAEE 274 (346)
T ss_pred cCCCceeEEEEECCc
Confidence 654 7999998864
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.7e-31 Score=217.54 Aligned_cols=147 Identities=21% Similarity=0.397 Sum_probs=138.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
...++|||+|||+++++++|+++|..||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45678999999999999999999999999999999999999999999999999999999999877651
Q ss_pred --------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy7847 88 --------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147 (170)
Q Consensus 88 --------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 147 (170)
.+|||+|||+++++++|+++|+.||.|..+.+.+|+..+.++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 489999999999999999999999999999999998888999999999999999999999
Q ss_pred HhcCCCccccCCeeEEEEeecc
Q psy7847 148 EMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 148 ~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.||+ ..++|+.|+|.++..
T Consensus 265 amNg---~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 265 SMNL---FDLGGQYLRVGKCVT 283 (612)
T ss_pred HhCC---CeeCCeEEEEEecCC
Confidence 9999 999999999998763
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.1e-30 Score=203.72 Aligned_cols=150 Identities=25% Similarity=0.435 Sum_probs=139.0
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------- 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------- 87 (170)
.+.....+|||+|||.++++++|+++|+.||.+..+.++.+..++.++|||||+|.+.++|..|++.+++.
T Consensus 84 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 84 SDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred ccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 33445678999999999999999999999999999999998888899999999999999999999876642
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 164 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR01661 164 TVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQR 243 (352)
T ss_pred EEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccccc
Confidence
Q ss_pred --------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHH
Q psy7847 88 --------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141 (170)
Q Consensus 88 --------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~ 141 (170)
.+|||+|||+.+++++|+++|++||.|..+++++|+.++.++|||||+|.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~ 323 (352)
T TIGR01661 244 ASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDE 323 (352)
T ss_pred CCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHH
Confidence 039999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 142 FIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 142 a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
|.+|+..||| ..++|++|+|+|+..
T Consensus 324 A~~Ai~~lnG---~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 324 AAMAILSLNG---YTLGNRVLQVSFKTN 348 (352)
T ss_pred HHHHHHHhCC---CEECCeEEEEEEccC
Confidence 9999999999 999999999999865
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.2e-30 Score=202.67 Aligned_cols=145 Identities=25% Similarity=0.377 Sum_probs=134.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
+..+|||+|||.++++++|+++|+.||+|.+|++++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3568999999999999999999999999999999999989999999999999999999999988762
Q ss_pred --------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 88 --------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 88 --------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
.+|||+|||..+++++|+++|+.||.+..+.++.+..++.++|||||+|.+.++|.+|++.||| ..+.+
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g---~~~~g 158 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG---TTPSG 158 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC---CccCC
Confidence 3799999999999999999999999999999998887888999999999999999999999999 66665
Q ss_pred --eeEEEEeec
Q psy7847 160 --LKTRSSITL 168 (170)
Q Consensus 160 --~~i~v~~~~ 168 (170)
.+|+|.++.
T Consensus 159 ~~~~i~v~~a~ 169 (352)
T TIGR01661 159 CTEPITVKFAN 169 (352)
T ss_pred CceeEEEEECC
Confidence 678888874
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.2e-29 Score=204.16 Aligned_cols=146 Identities=23% Similarity=0.432 Sum_probs=136.4
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC------------
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------ 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------ 86 (170)
....++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+. +++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457789999999999999999999999999999999999899999999999999999999996 332
Q ss_pred ---------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy7847 87 ---------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145 (170)
Q Consensus 87 ---------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 145 (170)
..+|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 25899999999999999999999999999999999988889999999999999999999
Q ss_pred HHHhcCCCccccCCeeEEEEeec
Q psy7847 146 NKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 146 ~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+..||| ..++|++|+|.|+.
T Consensus 245 ~~~l~g---~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 245 LEVMNG---FELAGRPIKVGYAQ 264 (457)
T ss_pred HHhcCC---cEECCEEEEEEEcc
Confidence 999999 99999999999964
No 6
>KOG0144|consensus
Probab=99.97 E-value=2.2e-30 Score=199.37 Aligned_cols=149 Identities=21% Similarity=0.348 Sum_probs=141.0
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
...-++||+.+|..++|.||+++|++||.|.+|.+++|+.++.++|+|||.|.+.++|.+++..+|+.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44567999999999999999999999999999999999999999999999999999999999887752
Q ss_pred -------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 88 -------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 88 -------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
+.|||+.|+..++|.+++++|++||.|++|.+++|. .+.+||||||.|.+.+-|..|++.|||...
T Consensus 112 k~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcccee
Confidence 488999999999999999999999999999999997 799999999999999999999999999888
Q ss_pred cccCCeeEEEEeecc
Q psy7847 155 LFVGDLKTRSSITLK 169 (170)
Q Consensus 155 ~~~~~~~i~v~~~~~ 169 (170)
...++.+|.|.||+.
T Consensus 191 meGcs~PLVVkFADt 205 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADT 205 (510)
T ss_pred eccCCCceEEEeccc
Confidence 889999999999986
No 7
>KOG0148|consensus
Probab=99.97 E-value=3.1e-29 Score=183.15 Aligned_cols=141 Identities=31% Similarity=0.578 Sum_probs=133.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
.....+||+.|+++++-++|++.|.+||.|.++++++|..|++++||+||.|.+.++|+.|+..++++
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 33567999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHH
Q psy7847 88 -------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142 (170)
Q Consensus 88 -------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a 142 (170)
++||++|++..+++++|++.|++||.|..|++.++ +||+||.|.+.|+|
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 49999999999999999999999999999999888 68999999999999
Q ss_pred HHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 143 IRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 143 ~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.+||..+|+ ..++|+.||++|-.+
T Consensus 214 ahAIv~mNn---tei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 214 AHAIVQMNN---TEIGGQLVRCSWGKE 237 (321)
T ss_pred HHHHHHhcC---ceeCceEEEEecccc
Confidence 999999999 999999999999654
No 8
>KOG0117|consensus
Probab=99.96 E-value=1.5e-28 Score=189.94 Aligned_cols=152 Identities=24% Similarity=0.405 Sum_probs=139.0
Q ss_pred CCCCCCcccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 5 RPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
..+|+..|..+.. ...+.|||+.||.++.|++|..+|+..|+|-++++|.|+.+|.++|||||.|.+.+.|+.|++.+
T Consensus 68 ~ggPpP~weg~~p--~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~l 145 (506)
T KOG0117|consen 68 YGGPPPGWEGPPP--PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKEL 145 (506)
T ss_pred cCCCCCcccCCCC--CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHh
Confidence 3456666655444 56789999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-----------------------------------------------------------------------------
Q psy7847 85 NDD----------------------------------------------------------------------------- 87 (170)
Q Consensus 85 ~~~----------------------------------------------------------------------------- 87 (170)
|+.
T Consensus 146 nn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 146 NNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred hCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHH
Confidence 862
Q ss_pred ----------------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEE
Q psy7847 88 ----------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133 (170)
Q Consensus 88 ----------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~af 133 (170)
..|||+||+.++|+|.|+++|+.||.++.++.++| |||
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaF 297 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAF 297 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeE
Confidence 18999999999999999999999999999988766 899
Q ss_pred EEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 134 VSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 134 v~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
|.|.++++|.+|++.+|| +.+.|..|.|..|.+
T Consensus 298 VHf~eR~davkAm~~~ng---keldG~~iEvtLAKP 330 (506)
T KOG0117|consen 298 VHFAEREDAVKAMKETNG---KELDGSPIEVTLAKP 330 (506)
T ss_pred EeecchHHHHHHHHHhcC---ceecCceEEEEecCC
Confidence 999999999999999999 999999999999864
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=6.1e-28 Score=200.21 Aligned_cols=140 Identities=32% Similarity=0.563 Sum_probs=131.7
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------------
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------------- 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------------- 87 (170)
.|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|+..+++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999988999999999999999999999988753
Q ss_pred -------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 88 -------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 88 -------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
.+|||+|||.++++++|+++|+.||.|..|.+..+. ++.++|||||+|.+.++|.+|++.+|| ..++++
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng---~~~~~~ 157 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG---MLLNDK 157 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc---cEecCc
Confidence 379999999999999999999999999999998875 778899999999999999999999999 999999
Q ss_pred eEEEEee
Q psy7847 161 KTRSSIT 167 (170)
Q Consensus 161 ~i~v~~~ 167 (170)
.|.|...
T Consensus 158 ~i~v~~~ 164 (562)
T TIGR01628 158 EVYVGRF 164 (562)
T ss_pred eEEEecc
Confidence 9988653
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.8e-27 Score=193.58 Aligned_cols=160 Identities=19% Similarity=0.361 Sum_probs=133.5
Q ss_pred CCCCCcccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..|+..|... .+...++|||+|||.++++++|+++|+.+|.|.+++++++ .+|.++|||||+|.+.++|++|++.++
T Consensus 44 g~Pp~~~~~~--~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~ln 120 (578)
T TIGR01648 44 GGPPPGWSGV--QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLN 120 (578)
T ss_pred CCCCCcccCC--CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcC
Confidence 3455666422 2445789999999999999999999999999999999999 699999999999999999999999987
Q ss_pred C----------------CceEEecCCCCCCCHHHHHHHhccCCC-eeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy7847 86 D----------------DFRLFCGDLGNDVTDELLIRTFSKYPS-FLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147 (170)
Q Consensus 86 ~----------------~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 147 (170)
+ .++|||+|||..+++++|.+.|+.++. +.. +.+..+...++++|||||+|.+.++|..|+.
T Consensus 121 g~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Air 200 (578)
T TIGR01648 121 NYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARR 200 (578)
T ss_pred CCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHH
Confidence 5 258999999999999999999999863 333 3333333456789999999999999999999
Q ss_pred HhcCCCccccCCeeEEEEeecc
Q psy7847 148 EMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 148 ~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.|+.. ...+.++.|.|+|+.+
T Consensus 201 kL~~g-ki~l~Gr~I~VdwA~p 221 (578)
T TIGR01648 201 KLMPG-RIQLWGHVIAVDWAEP 221 (578)
T ss_pred Hhhcc-ceEecCceEEEEeecc
Confidence 88641 1457899999999875
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=4.2e-27 Score=195.20 Aligned_cols=145 Identities=30% Similarity=0.526 Sum_probs=134.5
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
...+.|||+|||.++++++|+++|+.||.|.++.++++. +|.++|||||.|.+.++|.+|++.+++.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 345679999999999999999999999999999999985 7899999999999999999999876542
Q ss_pred -------------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEe
Q psy7847 88 -------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136 (170)
Q Consensus 88 -------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f 136 (170)
.+|||+||+..+++++|+++|+.||.|..+.++.| .++.++|+|||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEe
Confidence 26999999999999999999999999999999998 4789999999999
Q ss_pred cCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 137 KDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 137 ~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.+.++|.+|+..||| ..++|++|.|.++..
T Consensus 334 ~~~~~A~~A~~~~~g---~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 334 SNPEEANRAVTEMHG---RMLGGKPLYVALAQR 363 (562)
T ss_pred CCHHHHHHHHHHhcC---CeeCCceeEEEeccC
Confidence 999999999999999 999999999999875
No 12
>KOG0131|consensus
Probab=99.95 E-value=1.9e-27 Score=164.78 Aligned_cols=148 Identities=30% Similarity=0.508 Sum_probs=137.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC------------
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------ 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------ 86 (170)
-+.+.+|||+||+..++++.|+++|-+.|+|.++.+++++.+....||||++|.++++|+.|++-++.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999986663
Q ss_pred ----------CceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcc
Q psy7847 87 ----------DFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155 (170)
Q Consensus 87 ----------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 155 (170)
...+||+||.+.+++..|...|+.||.+.. ..+++++.++.++|+||+.|.+.+++.+|+..||| .
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng---q 162 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG---Q 162 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc---c
Confidence 248999999999999999999999999876 47889988899999999999999999999999999 9
Q ss_pred ccCCeeEEEEeecc
Q psy7847 156 FVGDLKTRSSITLK 169 (170)
Q Consensus 156 ~~~~~~i~v~~~~~ 169 (170)
.++++++.|+|+-+
T Consensus 163 ~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 163 YLCNRPITVSYAFK 176 (203)
T ss_pred hhcCCceEEEEEEe
Confidence 99999999999865
No 13
>KOG0145|consensus
Probab=99.95 E-value=1.2e-26 Score=169.09 Aligned_cols=156 Identities=26% Similarity=0.448 Sum_probs=145.9
Q ss_pred cccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---
Q psy7847 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--- 87 (170)
Q Consensus 11 ~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--- 87 (170)
+..+|+.+.-.+..|||.+||..||..+|+++|.+||.|..-++..|..+|.++|.+||.|....+|+.|++.+|++
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 44566777777888999999999999999999999999999999999899999999999999999999999988873
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 196 g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~ 275 (360)
T KOG0145|consen 196 GCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGP 275 (360)
T ss_pred CCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCC
Confidence
Q ss_pred ---ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 88 ---FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 88 ---~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
+|+||-||.+++++.-|+++|++||.+..+++++|..+++.+|||||.+.+-.+|..|+..||| ..++++.+.|
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG---y~lg~rvLQV 352 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG---YRLGDRVLQV 352 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC---ccccceEEEE
Confidence 2999999999999999999999999999999999998899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
++.+.
T Consensus 353 sFKtn 357 (360)
T KOG0145|consen 353 SFKTN 357 (360)
T ss_pred EEecC
Confidence 98764
No 14
>KOG0145|consensus
Probab=99.94 E-value=2.6e-26 Score=167.41 Aligned_cols=145 Identities=23% Similarity=0.342 Sum_probs=132.4
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
..|.|.-||.+||+++++.+|...|+|++|++++|+.+|++-||+||.|-++++|++|+..+|+-
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 34999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 88 ------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 88 ------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
..|||++||..+++.+|+++|++||.|..-+++.|..++.++|.+||.|..+.+|+.|++.|||. .-..+..+
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~-~P~g~tep 200 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGCTEP 200 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC-CCCCCCCC
Confidence 39999999999999999999999999998889999999999999999999999999999999993 22334467
Q ss_pred EEEEeec
Q psy7847 162 TRSSITL 168 (170)
Q Consensus 162 i~v~~~~ 168 (170)
|.|.++.
T Consensus 201 ItVKFan 207 (360)
T KOG0145|consen 201 ITVKFAN 207 (360)
T ss_pred eEEEecC
Confidence 7777653
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.6e-25 Score=183.69 Aligned_cols=140 Identities=20% Similarity=0.353 Sum_probs=122.7
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcC------------CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKY------------PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~------------g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||+++|+++|.++|..+ +.|..+.+ +..++||||+|.+.++|..|+. +++
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4457899999999999999999999864 23333433 3457899999999999999984 322
Q ss_pred --------------------------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeE
Q psy7847 87 --------------------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLK 116 (170)
Q Consensus 87 --------------------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~ 116 (170)
..+|||+|||..+++++|.++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 147999999999999999999999999999
Q ss_pred EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 117 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+.++++..++.++|||||+|.+.++|..|+..||| ..++|+.|+|.++.
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g---~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG---KDTGDNKLHVQRAC 373 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEEECc
Confidence 99999988899999999999999999999999999 99999999999874
No 16
>KOG0127|consensus
Probab=99.93 E-value=6.1e-25 Score=173.75 Aligned_cols=143 Identities=28% Similarity=0.360 Sum_probs=133.6
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND---------------- 86 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~---------------- 86 (170)
.+|||++||++++.++|.++|+.+|+|..+.+..++.++.++||+||.|...+++.+|+....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 7999999999999999999999999999999999988889999999999999999999986554
Q ss_pred -------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEE
Q psy7847 87 -------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135 (170)
Q Consensus 87 -------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~ 135 (170)
..+|.|+|||+.+.+++|+.+|+.||.+..|.|++.. .+.-+|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEE
Confidence 1499999999999999999999999999999999765 56667999999
Q ss_pred ecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 136 FKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 136 f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
|....+|.+|++.+|+ ..++||+|.|.||..
T Consensus 165 fk~~~dA~~Al~~~N~---~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNG---NKIDGRPVAVDWAVD 195 (678)
T ss_pred EeeHHHHHHHHHhccC---ceecCceeEEeeecc
Confidence 9999999999999999 999999999999864
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=2.6e-24 Score=175.44 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=119.1
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc--CC------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM--ND------------ 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~--~~------------ 86 (170)
++++|||+|||.++++++|+++|+.||.|.++.++++ +++|||+|.+.++|.+|+..+ ++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 479999999999999999743 11
Q ss_pred ---------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy7847 87 ---------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145 (170)
Q Consensus 87 ---------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 145 (170)
..+|+|.||++++++++|+++|+.||.|..+.+.++.. .|+|||+|.+.++|.+|
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 02689999999999999999999999999999877642 47899999999999999
Q ss_pred HHHhcCCCccccCC--eeEEEEeecc
Q psy7847 146 NKEMNEFPHLFVGD--LKTRSSITLK 169 (170)
Q Consensus 146 ~~~l~~~~~~~~~~--~~i~v~~~~~ 169 (170)
++.||| ..+.+ +.|+|.|+..
T Consensus 151 ~~~Lng---~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 151 KAALNG---ADIYNGCCTLKIEYAKP 173 (481)
T ss_pred HHHhcC---CcccCCceEEEEEEecC
Confidence 999999 77643 6899998753
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=3.2e-24 Score=176.05 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=125.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..+++.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999999999999889999999999999999999999887752
Q ss_pred -------------------------------------ceEEecCCCCC----------CCHHHHHHHhccCCCeeEEEEe
Q psy7847 88 -------------------------------------FRLFCGDLGND----------VTDELLIRTFSKYPSFLKAKVV 120 (170)
Q Consensus 88 -------------------------------------~~l~v~nlp~~----------~~~~~l~~~f~~~g~i~~~~~~ 120 (170)
.+|++.|+... ...++|+++|+.||.|..+.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 13455555421 1136799999999999999998
Q ss_pred ecCC---CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 121 RDKR---TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 121 ~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
++.. .+...|+|||+|.+.++|.+|+..||| ..++|+.|.+.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG---r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG---RKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC---CEECCeEEEEEEeCH
Confidence 7532 345579999999999999999999999 999999999998653
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=7e-24 Score=172.91 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=123.4
Q ss_pred CCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-----------
Q psy7847 20 ENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----------- 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----------- 87 (170)
.++.+|||+|||+ .+++++|+++|+.||.|.+|++++++ +|+|||+|.+.++|..|+..+|+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4567999999998 69999999999999999999998863 589999999999999999876641
Q ss_pred -----------------------------------------------ceEEecCCCCCCCHHHHHHHhccCCC--eeEEE
Q psy7847 88 -----------------------------------------------FRLFCGDLGNDVTDELLIRTFSKYPS--FLKAK 118 (170)
Q Consensus 88 -----------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~--i~~~~ 118 (170)
.+|||.|||..+++++|+++|+.||. +..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 26999999999999999999999998 77787
Q ss_pred EeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee------EEEEeecc
Q psy7847 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK------TRSSITLK 169 (170)
Q Consensus 119 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~------i~v~~~~~ 169 (170)
+.... +..+|+|||+|.+.++|.+|+..||+ ..++++. |+|+++.+
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~---~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNH---HQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcC---CccCCCCCCccceEEEEeccC
Confidence 75433 33578999999999999999999999 8998885 99999865
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=8.7e-24 Score=173.19 Aligned_cols=138 Identities=22% Similarity=0.420 Sum_probs=118.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCC-eeEEEEEec-CCCCCcCCEEEEEeCCHHHHHHHHHHcCC------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRD-KRTNKTKGFGFVSFKDPQDFIRANKEMND------------ 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~-v~~i~~~~~-~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------ 86 (170)
..++|||+|||.++++++|.+.|..++. +.++.++.. ...+++++||||+|.++++|..|+..++.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4678999999999999999999999863 444444332 23467899999999999999999876532
Q ss_pred ----------------CceEEecCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy7847 87 ----------------DFRLFCGDLGNDVTDELLIRTFSKY--PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148 (170)
Q Consensus 87 ----------------~~~l~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 148 (170)
..+|||+|||.++++++|+++|+.| |.|+.+.+. ++||||+|.+.++|.+|++.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHH
Confidence 2479999999999999999999999 999998764 45999999999999999999
Q ss_pred hcCCCccccCCeeEEEEeecc
Q psy7847 149 MNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 149 l~~~~~~~~~~~~i~v~~~~~ 169 (170)
||+ ..++|+.|+|+|+.+
T Consensus 289 lnG---~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 289 LNG---KELEGSEIEVTLAKP 306 (578)
T ss_pred hCC---CEECCEEEEEEEccC
Confidence 999 999999999999864
No 21
>KOG0127|consensus
Probab=99.91 E-value=2.2e-23 Score=164.96 Aligned_cols=146 Identities=27% Similarity=0.368 Sum_probs=131.6
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-------------- 87 (170)
.++|.|+|||+.+...+|+.+|+.||.|.+|.|++.+ .|.-.|||||.|.+..+|..|++.+|+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 6789999999999999999999999999999999775 5555599999999999999999987762
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred -----------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 88 -----------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 88 -----------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
.+|||+|||++++++.|...|++||.+.++.++.++.++.++|.|||.|.+..+|+.||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 299999999999999999999999999999999999999999999999999999999999772
Q ss_pred ---CCCccccCCeeEEEEeec
Q psy7847 151 ---EFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 151 ---~~~~~~~~~~~i~v~~~~ 168 (170)
+--...+.||.|+|..|.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred ccCCCceEEEeccEEeeeecc
Confidence 211278899999998764
No 22
>KOG0124|consensus
Probab=99.91 E-value=6.4e-24 Score=161.36 Aligned_cols=142 Identities=22% Similarity=0.420 Sum_probs=135.7
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
++||||.+++...|+.|+..|..||+|.+|.+.+|..+++.+|||||+|+-++.|.-+++.+|+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999973
Q ss_pred -----------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 88 -----------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 88 -----------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
+++||..+.++.+++||+.+|+.||.|..|.+.+++..+.++||+|++|.+.++...|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 499999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCCccccCCeeEEEEee
Q psy7847 151 EFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 151 ~~~~~~~~~~~i~v~~~ 167 (170)
- ..+||..++|...
T Consensus 274 l---FDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 274 L---FDLGGQYLRVGKC 287 (544)
T ss_pred h---hhcccceEecccc
Confidence 9 9999999998643
No 23
>KOG0148|consensus
Probab=99.91 E-value=4.2e-24 Score=156.38 Aligned_cols=140 Identities=29% Similarity=0.500 Sum_probs=117.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
....++|||+||+.++||+-|..+|++.|++.+++++.+. -+.. ..+.. ..+....++....+||+.|.+.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e-~~v~-------wa~~p-~nQsk~t~~~hfhvfvgdls~e 73 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDE-LKVN-------WATAP-GNQSKPTSNQHFHVFVGDLSPE 73 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhh-hccc-------cccCc-ccCCCCccccceeEEehhcchh
Confidence 3457899999999999999999999999999999999873 1111 11111 1111112222457999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeeccC
Q psy7847 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG 170 (170)
Q Consensus 99 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~~ 170 (170)
++-++|++.|.+||.|.++++++|..+++++||+||.|.+.++|++||..||| ..||+|.|+-+||+.+
T Consensus 74 I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG---qWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG---QWLGRRTIRTNWATRK 142 (321)
T ss_pred cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC---eeeccceeeccccccC
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999763
No 24
>KOG0146|consensus
Probab=99.89 E-value=8.6e-23 Score=149.55 Aligned_cols=150 Identities=27% Similarity=0.429 Sum_probs=138.6
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCc-------
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF------- 88 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~------- 88 (170)
+....++++||||.|...-.|||++.+|..||.+++|.+.+.. +|.++|+|||.|.+..+|..++..+|++.
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 3344578999999999999999999999999999999999984 89999999999999999999999888731
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 89 -------------------------------------------------------------------------------- 88 (170)
Q Consensus 89 -------------------------------------------------------------------------------- 88 (170)
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 89 -------------------------------------------------------------------------------- 88 (170)
Q Consensus 89 -------------------------------------------------------------------------------- 88 (170)
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence
Q ss_pred -----------------------------------eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEE
Q psy7847 89 -----------------------------------RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133 (170)
Q Consensus 89 -----------------------------------~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~af 133 (170)
.|||-.||.+..+.+|..+|-.||-|.+.++..|+-++.++.|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 999999999999999999999999999999998998999999999
Q ss_pred EEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 134 VSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 134 v~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
|.|.++.+++.||..||| ..+|-+++||-...+
T Consensus 332 VSfDNp~SaQaAIqAMNG---FQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNG---FQIGMKRLKVQLKRP 364 (371)
T ss_pred EecCCchhHHHHHHHhcc---hhhhhhhhhhhhcCc
Confidence 999999999999999999 999999999876543
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=1.9e-21 Score=157.87 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=120.5
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-------------- 87 (170)
.++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..+++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 688999999999999999999999999999999999888899999999999999999999877651
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence
Q ss_pred -----------------ceEEecCCCCCCC----------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHH
Q psy7847 88 -----------------FRLFCGDLGNDVT----------DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140 (170)
Q Consensus 88 -----------------~~l~v~nlp~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~ 140 (170)
.+|+|.|+....+ .++|.+.|++||.|..+.+... ...|++||.|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 1233344422222 3689999999999999988633 35799999999999
Q ss_pred HHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 141 DFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 141 ~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+|.+|++.||| ..++|+.|.+.+..
T Consensus 422 ~A~~A~~~lnG---r~f~gr~i~~~~~~ 446 (457)
T TIGR01622 422 AALAAFQALNG---RYFGGKMITAAFVV 446 (457)
T ss_pred HHHHHHHHhcC---cccCCeEEEEEEEc
Confidence 99999999999 99999999999865
No 26
>KOG0109|consensus
Probab=99.88 E-value=1.8e-22 Score=149.16 Aligned_cols=128 Identities=23% Similarity=0.476 Sum_probs=119.7
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
.++||+|||..+++.+|+.+|++||+|.+|+|+++ |+||..++...++.++.+||+-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999987 6999999999999999988862
Q ss_pred ----ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 88 ----FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 88 ----~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
.+++|+|+.+.++.++|+..|++||.+..|.+.+| |+||.|...++|..|++.||+ ..+.|++++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~---~~~~gk~m~ 143 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN---TEFQGKRMH 143 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc---cccccceee
Confidence 48999999999999999999999999999998765 899999999999999999999 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|-++++
T Consensus 144 vq~sts 149 (346)
T KOG0109|consen 144 VQLSTS 149 (346)
T ss_pred eeeecc
Confidence 988764
No 27
>KOG0123|consensus
Probab=99.87 E-value=3.2e-21 Score=151.55 Aligned_cols=132 Identities=31% Similarity=0.542 Sum_probs=122.8
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------------
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------------- 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------------- 87 (170)
.+||| +++|+.+|.++|+.+|++.++++.++. + +-|||||.|.++++|++|+..+|..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58888 999999999999999999999999996 5 9999999999999999999988753
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
..+||.||+++++...|..+|+.||.|.+|++.++. .| ++|| ||+|.++++|.+|++.+|| ..++|++|-|...
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng---~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNG---MLLNGKKIYVGLF 150 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcC---cccCCCeeEEeec
Confidence 369999999999999999999999999999999986 44 8999 9999999999999999999 9999999988654
No 28
>KOG0144|consensus
Probab=99.86 E-value=9.9e-22 Score=151.89 Aligned_cols=77 Identities=35% Similarity=0.480 Sum_probs=73.1
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.||+.+||.+.-+.+|-..|..||.|....+..|+.++-++.|+||.|++..+|..||..||| ..++.++++|-...
T Consensus 426 nlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amng---fQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNG---FQIGSKRLKVQLKR 502 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcc---hhhccccceEEeee
Confidence 999999999999999999999999999999888999999999999999999999999999999 99999999986543
No 29
>KOG0147|consensus
Probab=99.86 E-value=9.4e-22 Score=155.88 Aligned_cols=148 Identities=23% Similarity=0.445 Sum_probs=135.4
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------- 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------- 87 (170)
.++...+++|+-.|+...++-+|.++|+.+|+|.+++++.++.++.++|.|||+|-+.+++..++. |.|+
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 334556789999999999999999999999999999999999999999999999999999888873 3322
Q ss_pred -------------------------c-eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHH
Q psy7847 88 -------------------------F-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141 (170)
Q Consensus 88 -------------------------~-~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~ 141 (170)
. .|||+||.+++++++|+.+|.+||.|+.+.+++|..+|.++||||++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 1 38999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 142 FIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 142 a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
|.+|+..||| ..+.|+.|+|+..+
T Consensus 333 ar~a~e~lng---felAGr~ikV~~v~ 356 (549)
T KOG0147|consen 333 ARKALEQLNG---FELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHHhcc---ceecCceEEEEEee
Confidence 9999999999 99999999998754
No 30
>KOG4205|consensus
Probab=99.84 E-value=1.5e-20 Score=143.49 Aligned_cols=145 Identities=26% Similarity=0.430 Sum_probs=131.6
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC--------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND-------------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~-------------- 86 (170)
+..++||++|+++++++.|++.|.+||.+.++.+++++.++++++|+||+|.+++.+.+++..-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 678999999999999999999999999999999999999999999999999999998888754221
Q ss_pred ------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 87 ------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 87 ------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
...+||+++|..+++++++..|.+||.|..+.++.|.....++|++||.|.++++..+++. .+-
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f--- 160 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF--- 160 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce---
Confidence 2389999999999999999999999999999999999999999999999999888888766 455
Q ss_pred cccCCeeEEEEeecc
Q psy7847 155 LFVGDLKTRSSITLK 169 (170)
Q Consensus 155 ~~~~~~~i~v~~~~~ 169 (170)
..++++.+.|..|.+
T Consensus 161 ~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIP 175 (311)
T ss_pred eeecCceeeEeeccc
Confidence 889999999988865
No 31
>KOG0110|consensus
Probab=99.81 E-value=1.4e-19 Score=147.24 Aligned_cols=144 Identities=22% Similarity=0.342 Sum_probs=128.4
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC---CCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
.++||.||+++++.+++...|...|.|.++.|...+.. -.+.|||||+|.++++|..|++.|++.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988665421 246699999999999999999988852
Q ss_pred ------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy7847 88 ------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149 (170)
Q Consensus 88 ------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 149 (170)
..|+|+|+|+.++..+++.+|..||.+..++++.....+.++|+|||.|-++.+|.+|+..|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 38999999999999999999999999999999877556678999999999999999999999
Q ss_pred cCCCccccCCeeEEEEeecc
Q psy7847 150 NEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 150 ~~~~~~~~~~~~i~v~~~~~ 169 (170)
.+ ..+-||++.+.|+..
T Consensus 676 ~S---THlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 676 GS---THLYGRRLVLEWAKS 692 (725)
T ss_pred cc---cceechhhheehhcc
Confidence 98 999999999999853
No 32
>KOG0123|consensus
Probab=99.81 E-value=6.2e-19 Score=138.66 Aligned_cols=138 Identities=32% Similarity=0.536 Sum_probs=124.7
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------------
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------------- 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------------- 87 (170)
.+||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|.++++.+|+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999985 56 9999 99999999999999999873
Q ss_pred -------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 88 -------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 88 -------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
..+++.+++...+++.|...|+.+|.|....++.+. .+.++||+||.|.+.++|..|+..||+
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~--- 230 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNG--- 230 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccC---
Confidence 256777888999999999999999999999999886 566999999999999999999999999
Q ss_pred cccCCeeEEEEeec
Q psy7847 155 LFVGDLKTRSSITL 168 (170)
Q Consensus 155 ~~~~~~~i~v~~~~ 168 (170)
...++..+-|.-+.
T Consensus 231 ~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQ 244 (369)
T ss_pred CcCCccceeecccc
Confidence 88887777765544
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.79 E-value=2e-17 Score=136.37 Aligned_cols=66 Identities=20% Similarity=0.383 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..++|||+|||+++++++|+++|+.||.|.++++.+++.+|.++|||||+|.+.++|.+|+..+|+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg 268 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL 268 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999999999999988899999999999999999999988774
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=4.3e-18 Score=117.86 Aligned_cols=80 Identities=29% Similarity=0.450 Sum_probs=76.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+.+++++|+++|++||.|..+.+..|+.++.++|||||+|.+.++|+.|++.||+ ..+++++|+|++
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng---~~i~Gr~l~V~~ 110 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG---KELNGRHIRVNP 110 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEEe
Confidence 46899999999999999999999999999999999998999999999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 864
No 35
>KOG4211|consensus
Probab=99.76 E-value=3.5e-17 Score=128.72 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=118.0
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-----------
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----------- 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----------- 86 (170)
+......|.+++||+++|++||.++|+.++ |+++.+.+ .+|+..|-|||+|.+++++.+|++....
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 445567899999999999999999999998 77766655 4799999999999999999999974321
Q ss_pred --------------------CceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy7847 87 --------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145 (170)
Q Consensus 87 --------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a 145 (170)
...|.+++||+.++++||.++|+..--+.. |.++.++ .+.+.|-|||+|++.++|++|
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHH
Confidence 248889999999999999999987744444 4455554 667899999999999999999
Q ss_pred HHHhcCCCccccCCeeEEEEeec
Q psy7847 146 NKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 146 ~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+.. |. ..++.+-|.|..+.
T Consensus 162 l~r-hr---e~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 162 LGR-HR---ENIGHRYIEVFRSS 180 (510)
T ss_pred HHH-HH---HhhccceEEeehhH
Confidence 995 55 78888888886543
No 36
>KOG0105|consensus
Probab=99.71 E-value=2.6e-16 Score=109.97 Aligned_cols=123 Identities=23% Similarity=0.355 Sum_probs=108.2
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
..++++||+|||.++-+-+|.++|-+||.|.+|.+..- .....||||+|+++.+|+.|+..-++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35788999999999999999999999999999988432 23467999999999999999974442
Q ss_pred ----------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEE
Q psy7847 87 ----------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132 (170)
Q Consensus 87 ----------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~a 132 (170)
..++.|++||++.++++|+......|.+.+..+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 249999999999999999999999999999999886 378
Q ss_pred EEEecCHHHHHHHHHHhcCC
Q psy7847 133 FVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 133 fv~f~~~~~a~~a~~~l~~~ 152 (170)
.|+|-..++..-|+.+|+..
T Consensus 154 vV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred eeeeeehhhHHHHHHhhccc
Confidence 99999999999999999873
No 37
>KOG4212|consensus
Probab=99.70 E-value=6.7e-16 Score=120.22 Aligned_cols=140 Identities=19% Similarity=0.305 Sum_probs=126.3
Q ss_pred CcEEEEcCCCCCccHHHHHHHhh-cCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~-~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
.+.+||.|+|+++.+++|+++|. +.|.|+.|.+..|. +|+++++|.|+|++++.+++|++.++..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 45599999999999999999996 68999999999995 8999999999999999999999977631
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence
Q ss_pred -------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 88 -------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 88 -------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
..+||.||.+.+....|.+.|...|.++++.+-.|+ -+.++|+|.++|..+-.|..|+..+++
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~--- 278 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDR--- 278 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhcc---
Confidence 188999999999999999999999999999998887 468899999999999999999999998
Q ss_pred cccCCeeEEEEe
Q psy7847 155 LFVGDLKTRSSI 166 (170)
Q Consensus 155 ~~~~~~~i~v~~ 166 (170)
.-+.+++..+..
T Consensus 279 ~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLFDRRMTVRL 290 (608)
T ss_pred CCCccccceeec
Confidence 777777777665
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=2e-16 Score=96.04 Aligned_cols=70 Identities=36% Similarity=0.560 Sum_probs=66.6
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 90 l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
|||+|||+.+++++|+++|++||.+..+.+..+ .++.++|+|||+|.+.++|.+|++.+|| ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g---~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNG---KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTT---EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCC---CEECccCcC
Confidence 799999999999999999999999999999887 4788999999999999999999999999 999999886
No 39
>KOG4206|consensus
Probab=99.69 E-value=1.8e-15 Score=108.84 Aligned_cols=140 Identities=21% Similarity=0.380 Sum_probs=120.7
Q ss_pred CCCcEEEEcCCCCCccHHHHHH----HhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIR----TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-------- 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~----~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-------- 87 (170)
++..++||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..++|-
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999999998 999999999887764 5788999999999999999999877651
Q ss_pred ---------------------------------------------------------------ceEEecCCCCCCCHHHH
Q psy7847 88 ---------------------------------------------------------------FRLFCGDLGNDVTDELL 104 (170)
Q Consensus 88 ---------------------------------------------------------------~~l~v~nlp~~~~~~~l 104 (170)
..+++.|+|..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 26889999999999999
Q ss_pred HHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 105 ~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
..+|.+|+....++++... .+.|||+|.+.-.+..|.+.+.++.+. ....++|.++.+
T Consensus 164 ~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it--~~~~m~i~~a~K 221 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKIT--KKNTMQITFAKK 221 (221)
T ss_pred HHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceec--cCceEEecccCC
Confidence 9999999999999987654 679999999999999999999995322 388899888764
No 40
>KOG0147|consensus
Probab=99.67 E-value=5.2e-16 Score=123.53 Aligned_cols=137 Identities=20% Similarity=0.316 Sum_probs=116.1
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
+.|||+||-.++++++|+.+|+.||.|+.|.+.++..+|.++||+|++|.+.++|.+|++.+|+-
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 34999999999999999999999999999999999889999999999999999999999988861
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence
Q ss_pred -----ceEEecCC--CCC-----CC---HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCC
Q psy7847 88 -----FRLFCGDL--GND-----VT---DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 88 -----~~l~v~nl--p~~-----~~---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 152 (170)
.|+.+.|+ |.. |. .+++.+-|++||.|.-|.+-+. +-|+.||.|.+.++|..|+.+|||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg- 512 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG- 512 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh-
Confidence 03333333 111 11 3788888999999999888332 248999999999999999999999
Q ss_pred CccccCCeeEEEEee
Q psy7847 153 PHLFVGDLKTRSSIT 167 (170)
Q Consensus 153 ~~~~~~~~~i~v~~~ 167 (170)
.++.|+-|++.|-
T Consensus 513 --rWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 513 --RWFAGRMITAKYL 525 (549)
T ss_pred --hhhccceeEEEEe
Confidence 9999999999874
No 41
>KOG0121|consensus
Probab=99.67 E-value=2.5e-16 Score=103.79 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=79.2
Q ss_pred HHHHcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 80 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
.++.+..++||||+||++.++||+|.++|+..|.|..|.+-.|+....+.|+|||+|.+.++|..|++.++| ..+.+
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg---trLdd 105 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG---TRLDD 105 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc---Ccccc
Confidence 344556678999999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred eeEEEEee
Q psy7847 160 LKTRSSIT 167 (170)
Q Consensus 160 ~~i~v~~~ 167 (170)
++|++.|.
T Consensus 106 r~ir~D~D 113 (153)
T KOG0121|consen 106 RPIRIDWD 113 (153)
T ss_pred cceeeecc
Confidence 99999985
No 42
>KOG1457|consensus
Probab=99.67 E-value=1.7e-15 Score=108.72 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=109.9
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEe-cCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR-DKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------ 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~-~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------ 87 (170)
...++..-++|||.+||.++...+|..+|..|-..+...+.. ++....++-+||++|.+..+|..++..+||-
T Consensus 27 ~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 27 LADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 344455578999999999999999999999987777776643 3222346789999999999999999988861
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 107 ~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~ 186 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAP 186 (284)
T ss_pred CceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhh
Confidence
Q ss_pred ------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHH
Q psy7847 88 ------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143 (170)
Q Consensus 88 ------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 143 (170)
.+|||.||.+++++++|+.+|+.|......++.-. .|. -.||++|++.+.|.
T Consensus 187 ~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 187 DSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQAT 262 (284)
T ss_pred hhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHH
Confidence 19999999999999999999999998887776432 233 37999999999999
Q ss_pred HHHHHhcCC
Q psy7847 144 RANKEMNEF 152 (170)
Q Consensus 144 ~a~~~l~~~ 152 (170)
.|+..|+|+
T Consensus 263 ~am~~lqg~ 271 (284)
T KOG1457|consen 263 DAMNHLQGN 271 (284)
T ss_pred HHHHHhhcc
Confidence 999999883
No 43
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=4.5e-16 Score=121.82 Aligned_cols=81 Identities=26% Similarity=0.353 Sum_probs=77.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.|..+++++|..++.++|||||+|.++++|.+|++.||+ ..+.+++|+|+
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG---~~l~gr~i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG---ITVRNKRLKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC---CccCCceeeee
Confidence 457999999999999999999999999999999999988999999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8754
No 44
>KOG0122|consensus
Probab=99.65 E-value=1e-15 Score=111.03 Aligned_cols=81 Identities=25% Similarity=0.374 Sum_probs=77.7
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|.|.||+.++++++|+++|.+||.|..+.+.+|+.+|.++|||||.|.++++|.+||..||| .=..+..|+|.|
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG---~gyd~LILrvEw 265 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG---YGYDNLILRVEW 265 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC---cccceEEEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999999 889999999999
Q ss_pred eccC
Q psy7847 167 TLKG 170 (170)
Q Consensus 167 ~~~~ 170 (170)
+.+.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9864
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=2.3e-15 Score=104.18 Aligned_cols=68 Identities=32% Similarity=0.539 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+++|||+|||+++++++|+++|++||.|.++.++.++.++.+++||||+|.+.++|+.|++.+++.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999999999999999999999999999999989999999999999999999999988763
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=5.2e-15 Score=90.08 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=64.5
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 90 l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
|+|+|||+++++++|.++|+.+|.|..+.+..++. +.++|+|||+|.+.++|.+|++.+++ ..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~---~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG---KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT---EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC---cEECCEEcC
Confidence 68999999999999999999999999999999875 88999999999999999999999999 999999885
No 47
>KOG0129|consensus
Probab=99.62 E-value=1.3e-14 Score=114.96 Aligned_cols=130 Identities=22% Similarity=0.335 Sum_probs=109.5
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC-CCC--CcCC---EEEEEeCCHHHHHHHHHHcCC-----
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK-RTN--KTKG---FGFVSFKDPQDFIRANKEMND----- 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~-~~~--~~~~---~afv~f~~~~~a~~~~~~~~~----- 86 (170)
.+.-+++||||+||++++|++|...|..||.+. +...... ..+ ..+| |+|+.|+++.++...+..+..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 345578899999999999999999999999653 4444211 112 3466 999999999999988864431
Q ss_pred ------------------------------------CceEEecCCCCCCCHHHHHHHhc-cCCCeeEEEEeecCCCCCcc
Q psy7847 87 ------------------------------------DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTK 129 (170)
Q Consensus 87 ------------------------------------~~~l~v~nlp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~ 129 (170)
.+|+||++||..++.++|..+|. -||.|..+-|-.|++-+.++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 35999999999999999999997 79999999999998899999
Q ss_pred cEEEEEecCHHHHHHHHHH
Q psy7847 130 GFGFVSFKDPQDFIRANKE 148 (170)
Q Consensus 130 g~afv~f~~~~~a~~a~~~ 148 (170)
|.|-|+|.+.++..+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999984
No 48
>KOG0110|consensus
Probab=99.60 E-value=1.4e-14 Score=118.33 Aligned_cols=141 Identities=23% Similarity=0.304 Sum_probs=119.3
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-----------
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----------- 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----------- 87 (170)
......++++|||..+..+++...|..||.+..+.+++ .|. -++|+|-++.+|.+|...+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc---ccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 33456799999999999999999999999999996652 222 3899999999999998755431
Q ss_pred ------------------------------------------------------------ceEEecCCCCCCCHHHHHHH
Q psy7847 88 ------------------------------------------------------------FRLFCGDLGNDVTDELLIRT 107 (170)
Q Consensus 88 ------------------------------------------------------------~~l~v~nlp~~~~~~~l~~~ 107 (170)
..||+.||+++++.+++...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 14999999999999999999
Q ss_pred hccCCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 108 FSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 108 f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
|...|.|..+.|...+.. ..+.|||||+|.+.++|+.|++.|+| ..+.|+.|.+.++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg---tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG---TVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC---ceecCceEEEEecc
Confidence 999999999877654421 13569999999999999999999999 99999999999986
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=9.6e-15 Score=88.54 Aligned_cols=61 Identities=38% Similarity=0.629 Sum_probs=58.4
Q ss_pred EEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 25 v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
|||+|||+++++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|.+|+..+++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 799999999999999999999999999999998 5789999999999999999999999987
No 50
>KOG0125|consensus
Probab=99.57 E-value=6.5e-15 Score=110.96 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=73.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
+.++|+|+|+|+...+.||+.+|.+||.|.++.|+.+ ...++|||||+|++.+||++|-.+||| .++.||+|.|+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHg---t~VEGRkIEVn 169 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHG---TVVEGRKIEVN 169 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhc---ceeeceEEEEe
Confidence 4579999999999999999999999999999999877 366799999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
.++.
T Consensus 170 ~ATa 173 (376)
T KOG0125|consen 170 NATA 173 (376)
T ss_pred ccch
Confidence 8763
No 51
>KOG1548|consensus
Probab=99.56 E-value=4.7e-13 Score=101.65 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=117.9
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCee--------EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--- 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~--------~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--- 87 (170)
+.....|||.|||.++|.+++.++|+.+|.|. .|++.++. .|.-+|=|.+.|...+++.-|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33455699999999999999999999999664 37888886 5999999999999999999999866641
Q ss_pred --------------------------------------------------------ceEEecCCC----CCCC-------
Q psy7847 88 --------------------------------------------------------FRLFCGDLG----NDVT------- 100 (170)
Q Consensus 88 --------------------------------------------------------~~l~v~nlp----~~~~------- 100 (170)
++|.+.|+= ...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 277777652 1223
Q ss_pred HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 101 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+++|.+-++.||.+..+.+.- ..+.|.+-|.|.+.++|..|++.|+| ..++||.|..++.+
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~G---R~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDG---RWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcC---eeecceEEEEEEeC
Confidence 477788899999999997753 34688999999999999999999999 99999999988754
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.7e-14 Score=106.12 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=69.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+.+++++|+++|+.||.|..+.+++++. ++|+|||+|.++++|..|+. ||| ..++|++|+|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG---~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSG---ATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcC---CeeCCceEEEEe
Confidence 46899999999999999999999999999999988753 57899999999999999995 999 999999999998
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 75
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=9.5e-14 Score=83.78 Aligned_cols=72 Identities=36% Similarity=0.544 Sum_probs=66.7
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
+|+|+|+|..+++++|+++|.+||.+..+.+..++ +.++|+|||+|.+.++|..|++.+++ ..+.|++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~---~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG---TKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC---cEECCEEEeeC
Confidence 58999999999999999999999999999988775 67889999999999999999999999 88899998874
No 54
>KOG0149|consensus
Probab=99.52 E-value=3.1e-14 Score=102.98 Aligned_cols=65 Identities=35% Similarity=0.617 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
-.+||||||++.+..+.|+++|++||+|++..++.|+.+|+++||+||+|++.++|.+|++.-+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p 76 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP 76 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC
Confidence 45699999999999999999999999999999999999999999999999999999999986553
No 55
>KOG0122|consensus
Probab=99.52 E-value=8.5e-14 Score=101.19 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=64.4
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+..+|.|.|||.++++++|.++|.+||.+..+.+.+++.||.++|||||.|.+.++|.+|+..|++-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 5678999999999999999999999999999999999999999999999999999999999999973
No 56
>KOG0113|consensus
Probab=99.52 E-value=6.9e-14 Score=104.25 Aligned_cols=78 Identities=27% Similarity=0.485 Sum_probs=75.7
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+||||+.|++++++..|++.|+.||.|..|.+++|+.+++++|||||+|.++.+...|.+..+| ..|.|+.|-|.|.
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG---~~Idgrri~VDvE 178 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG---IKIDGRRILVDVE 178 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC---ceecCcEEEEEec
Confidence 6999999999999999999999999999999999999999999999999999999999999999 9999999999986
Q ss_pred c
Q psy7847 168 L 168 (170)
Q Consensus 168 ~ 168 (170)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 57
>KOG0107|consensus
Probab=99.51 E-value=6.4e-14 Score=97.17 Aligned_cols=76 Identities=30% Similarity=0.516 Sum_probs=70.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
+....|||+||+..+++.+|+.+|..||.+..+-|.+.+ .|||||+|+++-+|..|+..|+| ..++|..|+|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG---~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDG---KDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCC---ccccCceEEE
Confidence 456799999999999999999999999999988776654 89999999999999999999999 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
.++.
T Consensus 80 E~S~ 83 (195)
T KOG0107|consen 80 ELST 83 (195)
T ss_pred Eeec
Confidence 9875
No 58
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=1.4e-13 Score=82.64 Aligned_cols=71 Identities=35% Similarity=0.506 Sum_probs=65.9
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 92 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 92 v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
|+|||..+++++|+++|++||.+..+.+..++.++.++|+|||+|.+.++|..|++.+++ ..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~---~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG---KELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC---CeeCCcEEEeC
Confidence 579999999999999999999999999988876788999999999999999999999999 88899998874
No 59
>KOG0124|consensus
Probab=99.50 E-value=5.9e-13 Score=102.01 Aligned_cols=66 Identities=20% Similarity=0.409 Sum_probs=60.0
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..-.++||..+-++.+++||++.|+.||+|.+|.+-++...+..+||+|++|.+..+...++..+|
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 345689999999999999999999999999999999998777889999999999999998887665
No 60
>KOG0131|consensus
Probab=99.50 E-value=4e-14 Score=98.74 Aligned_cols=83 Identities=28% Similarity=0.420 Sum_probs=78.8
Q ss_pred HcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 83 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
..++..+|||+||+..++++.|+++|-+.|.+..+.+++|+.++..+||||++|.++++|+-|++.||. ..+-|++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~---VkLYgrpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM---VKLYGRPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH---HHhcCcee
Confidence 346678999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred EEEeec
Q psy7847 163 RSSITL 168 (170)
Q Consensus 163 ~v~~~~ 168 (170)
+|+.+.
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 999875
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.7e-13 Score=83.37 Aligned_cols=61 Identities=28% Similarity=0.524 Sum_probs=55.7
Q ss_pred EEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 25 v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
|+|+|||+++++++|.++|+.+|.|..+.+..++. +.++++|||+|.++++|..++..+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999875 89999999999999999999998873
No 62
>KOG0149|consensus
Probab=99.49 E-value=6.4e-14 Score=101.37 Aligned_cols=76 Identities=32% Similarity=0.587 Sum_probs=69.6
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
..+||++|++.+..+.|++.|++||+|....++.|+.+++++|||||+|.+.++|.+|.+.-| -.|+||+.-++.|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~----piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN----PIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC----Ccccccccccchh
Confidence 489999999999999999999999999999999999999999999999999999999988655 6788887776655
No 63
>KOG0106|consensus
Probab=99.47 E-value=8.5e-14 Score=100.94 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=109.6
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------------
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------------- 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------------- 87 (170)
.+||++||+.+.+.+|..+|+.||.+.++.+.. +|+||.|.+..+|..++..+++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 689999999999999999999999999887743 57899999999999998766541
Q ss_pred -------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHH
Q psy7847 88 -------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142 (170)
Q Consensus 88 -------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a 142 (170)
+.+.+.+++..+.+.+|...|.++|.+..... ..+.+||+|.+.+++
T Consensus 75 ~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 75 RGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDA 146 (216)
T ss_pred cccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhh
Confidence 37788899999999999999999999854433 256899999999999
Q ss_pred HHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 143 IRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 143 ~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.+|+..+++ ..+.+++|++.+..
T Consensus 147 ~ra~~~l~~---~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 147 KRALEKLDG---KKLNGRRISVEKNS 169 (216)
T ss_pred hhcchhccc---hhhcCceeeecccC
Confidence 999999999 99999999986543
No 64
>KOG0130|consensus
Probab=99.47 E-value=1.5e-13 Score=91.55 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=75.6
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+.|||.++...++++++...|+.||.|..+.+..|+-+|..+|||+|+|.+.++|+.|+..+|| ..+.+..|+|.|.
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng---~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG---AELLGQNVSVDWC 149 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc---hhhhCCceeEEEE
Confidence 6999999999999999999999999999999999998999999999999999999999999999 9999999999997
Q ss_pred c
Q psy7847 168 L 168 (170)
Q Consensus 168 ~ 168 (170)
.
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 5
No 65
>KOG0111|consensus
Probab=99.46 E-value=5e-14 Score=101.10 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=78.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
+.+++|||++|-.++++.-|...|=+||.|.+|+++.|..++++||||||+|...++|..|+..||+ ..+.||.|+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne---sEL~GrtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE---SELFGRTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch---hhhcceeEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
++|.+
T Consensus 85 N~AkP 89 (298)
T KOG0111|consen 85 NLAKP 89 (298)
T ss_pred eecCC
Confidence 99875
No 66
>KOG0126|consensus
Probab=99.46 E-value=8.4e-15 Score=102.14 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=75.6
Q ss_pred cCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 84 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
..++..+||+|||+..|+-||--+|++||.++.|.+++|+.+|+++||||+.|++..+..-|+..||| .-+.||.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG---iki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG---IKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC---ceecceeEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEe
Q psy7847 164 SSI 166 (170)
Q Consensus 164 v~~ 166 (170)
|..
T Consensus 109 VDH 111 (219)
T KOG0126|consen 109 VDH 111 (219)
T ss_pred eee
Confidence 974
No 67
>KOG0114|consensus
Probab=99.46 E-value=5.3e-13 Score=85.06 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=68.3
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.+.|||+|||+.+|.+++.++|+.||+|..|++--. ...+|-|||.|++..+|.+|...|+| ..++++.+.|-|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg---~n~~~ryl~vly 91 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSG---YNVDNRYLVVLY 91 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcc---cccCCceEEEEe
Confidence 358999999999999999999999999999998443 34589999999999999999999999 999999999876
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
-+
T Consensus 92 yq 93 (124)
T KOG0114|consen 92 YQ 93 (124)
T ss_pred cC
Confidence 43
No 68
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=1.1e-12 Score=79.43 Aligned_cols=74 Identities=39% Similarity=0.582 Sum_probs=67.7
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
+|+|+|||+.+++++|.+.|+.+|.+..+.+..++. +.++|+|+|+|.+.++|..|++.+++ ..+.|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~---~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNG---KELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEeC
Confidence 478999999999999999999999999999988763 36789999999999999999999999 889999999875
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=3.3e-13 Score=106.90 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=70.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCH--HHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP--QDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..+|||+||++.+++++|..+|+.||.|..+.+++. +| +|||||+|.+. .++.+|+..||| ..++|+.|+|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNG---AEWKGR~LKV 82 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNG---CVWKGGRLRL 82 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcC---CeecCceeEE
Confidence 468999999999999999999999999999999855 45 99999999987 789999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
..|.+
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 98764
No 70
>KOG4207|consensus
Probab=99.45 E-value=1.7e-13 Score=97.55 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=76.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
++-..|.|.||-+.++.++|..+|++||.|-++.|++|+-++.++|||||.|....+|++|+.+|+| .+++|+-|.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG---~~ldgRelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG---AVLDGRELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc---eeeccceeee
Confidence 3456899999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
-+|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 8763
No 71
>KOG4212|consensus
Probab=99.45 E-value=3.7e-12 Score=99.58 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=65.2
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+++|+|||.++|++.|+..|..+|.+.+..++. .++++| .|.|.++++|++|+..||| ..+.++-|+|.|.
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mng---s~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNG---SRLDGRNIKVTYF 608 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhcc---CcccCceeeeeeC
Confidence 999999999999999999999999999988843 466776 7999999999999999999 9999999999874
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=3.5e-12 Score=95.78 Aligned_cols=126 Identities=29% Similarity=0.469 Sum_probs=99.9
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-------------- 87 (170)
.++|||+|||.++++++|.++|..||.+..+.+..++.++.++|+|||.|.+.+++..|+..+++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999999889999999999999999999999877741
Q ss_pred -------------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEe
Q psy7847 88 -------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136 (170)
Q Consensus 88 -------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f 136 (170)
..+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 2666778899999999999999999997666655443333333333333
Q ss_pred cCHHHHHHHHH
Q psy7847 137 KDPQDFIRANK 147 (170)
Q Consensus 137 ~~~~~a~~a~~ 147 (170)
.....+.....
T Consensus 275 ~~~~~~~~~~~ 285 (306)
T COG0724 275 EASKDALESNS 285 (306)
T ss_pred hHHHhhhhhhc
Confidence 33333333333
No 73
>KOG1365|consensus
Probab=99.44 E-value=1.5e-12 Score=100.22 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=114.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhc---C-CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSK---Y-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND---------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~---~-g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~---------- 86 (170)
..-.|.+++||+++++.++.++|.. . |..+.+.+++. .+|+..|-||+.|..+++|..++....+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456889999999999999999963 2 24566666664 4899999999999999999999864332
Q ss_pred -----------------------------------------CceEEecCCCCCCCHHHHHHHhccCCC-eeE--EEEeec
Q psy7847 87 -----------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPS-FLK--AKVVRD 122 (170)
Q Consensus 87 -----------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~--~~~~~~ 122 (170)
..++.+++||+..+.|+|-.+|..|-. |.. +.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 239999999999999999999988754 333 566665
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 123 KRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 123 ~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
. .|.+.|-|||++.+.++|..|....|. .....+.|.|-
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk---~~mk~RYiEvf 357 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHK---KLMKSRYIEVF 357 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHH---hhcccceEEEe
Confidence 4 688999999999999999999999998 77778888774
No 74
>KOG0117|consensus
Probab=99.43 E-value=2e-12 Score=101.18 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=93.6
Q ss_pred cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhccCCCe
Q psy7847 35 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSF 114 (170)
Q Consensus 35 t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i 114 (170)
.++.|+.+.++-|.-..+..--.++.|.+.+ +.-+ .....+-+||+.||.++.|++|.-+|...|.|
T Consensus 44 ~eaal~al~E~tgy~l~ve~gqrk~ggPpP~-----weg~--------~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I 110 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVENGQRKYGGPPPG-----WEGP--------PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKI 110 (506)
T ss_pred HHHHHHHHHHhcCceEEEeccccccCCCCCc-----ccCC--------CCCCCceEEecCCCccccchhhHHHHHhccce
Confidence 5677778888777555554444444444444 1100 11456799999999999999999999999999
Q ss_pred eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 115 LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 115 ~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
-.++++.|+.+|.++|||||.|.+.++|+.|++.||+.. +--|+.|.|+++.
T Consensus 111 ~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E--ir~GK~igvc~Sv 162 (506)
T KOG0117|consen 111 YELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE--IRPGKLLGVCVSV 162 (506)
T ss_pred eeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc--ccCCCEeEEEEee
Confidence 999999999999999999999999999999999999953 3367888888764
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=95.65 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=67.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|+|+||++.+++++|+++|+.+|.|..|.+++|. ...|+|||+|.+++++..|+. |+| ..+.+++|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnG---a~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSG---ATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCC---CeeCCceEEEE
Confidence 35799999999999999999999999999999999874 345799999999999999995 999 99999999886
Q ss_pred e
Q psy7847 166 I 166 (170)
Q Consensus 166 ~ 166 (170)
-
T Consensus 77 ~ 77 (243)
T PLN03121 77 R 77 (243)
T ss_pred e
Confidence 4
No 76
>KOG0108|consensus
Probab=99.42 E-value=6e-13 Score=106.15 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=76.7
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+.+||+|+|+++++++|..+|+..|.|..+++..|+.+|.++||||++|.+.+++..|++.||| ..++|++|+|+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg---~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG---AEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC---cccCCceEEeecc
Confidence 7899999999999999999999999999999999999999999999999999999999999999 9999999999997
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
..
T Consensus 96 ~~ 97 (435)
T KOG0108|consen 96 SN 97 (435)
T ss_pred cc
Confidence 53
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.41 E-value=2.1e-12 Score=75.19 Aligned_cols=56 Identities=29% Similarity=0.450 Sum_probs=50.5
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 104 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|++.||| ..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~---~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNG---RQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTT---SEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEEEC
Confidence 67899999999999986653 68999999999999999999999 9999999999986
No 78
>KOG0114|consensus
Probab=99.41 E-value=1.4e-12 Score=83.11 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=61.4
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..-+++..+.|||+|||+++|.+++.++|+.||+|..|++-- +...+|.|||.|++..+|.+|+.++.+.
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhccc
Confidence 344566678899999999999999999999999999998854 3467899999999999999999999873
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=97.30 Aligned_cols=79 Identities=32% Similarity=0.481 Sum_probs=75.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||..+++++|.++|..||.+..+.+..++..+.++|+|||.|.+.+++..|+..++| ..+.|++|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~---~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG---KELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC---CeECCceeEeec
Confidence 48999999999999999999999999999999999988899999999999999999999999999 999999999998
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 64
No 80
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.7e-12 Score=94.76 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.++|||+|||+++++++|+++|+.||.|.++.+++++ .+++||||+|.+++++..|+. +++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG 64 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSG 64 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcC
Confidence 5789999999999999999999999999999999875 257899999999999999995 665
No 81
>KOG1190|consensus
Probab=99.36 E-value=2.1e-11 Score=94.58 Aligned_cols=139 Identities=18% Similarity=0.234 Sum_probs=116.1
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------- 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------- 87 (170)
.+..--+++|.|+-+.++-+.|..+|++||.|..|.-... ...--|.|+|.+.+.|..|...++|.
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 3444456899999999999999999999999988765443 12234899999999999998877652
Q ss_pred ----------------------------------------------------------------------------ceEE
Q psy7847 88 ----------------------------------------------------------------------------FRLF 91 (170)
Q Consensus 88 ----------------------------------------------------------------------------~~l~ 91 (170)
..|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 1466
Q ss_pred ecCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 92 CGDLG-NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 92 v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
|.||. ..+|.+.|..+|+-||.|.++.++.+++ --|+|+|.+..+|+-|+..|+| ..+-|++|+|.++.
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g---~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEG---HKLYGKKLRVTLSK 371 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhc---ceecCceEEEeecc
Confidence 66764 5799999999999999999999998762 3599999999999999999999 99999999999874
No 82
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=6.5e-12 Score=76.48 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=54.6
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 101 DELLIRTFS----KYPSFLKAK-VVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 101 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
+++|++.|+ .||.+..+. +..++.+ +.++|+|||+|.+.++|.+|++.||| ..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g---~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG---RYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC---CEECCEEEEeC
Confidence 567888888 999999985 6666655 88999999999999999999999999 99999999874
No 83
>KOG1190|consensus
Probab=99.34 E-value=3.9e-11 Score=93.13 Aligned_cols=137 Identities=18% Similarity=0.288 Sum_probs=113.1
Q ss_pred CcEEEEcCCC-CCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 22 DFRLFCGDLG-NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp-~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
...|-|.||. ..+|.+.|..+|+-||.|..|+|+.++. .-|.|++.+...|.-|++.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 4567788885 5699999999999999999999998763 46999999999999999987762
Q ss_pred -------------------------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCC
Q psy7847 88 -------------------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124 (170)
Q Consensus 88 -------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 124 (170)
.+++++|+|+++++|+++.+|...|.......-.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 2899999999999999999999888765543211
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC-eeEEEEeeccC
Q psy7847 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD-LKTRSSITLKG 170 (170)
Q Consensus 125 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~-~~i~v~~~~~~ 170 (170)
++.+-+|++++.+.+.|..|+-.+|+ ..++. ..++|+++..+
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hn---h~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHN---HYLGENHHLRVSFSKST 491 (492)
T ss_pred -CCCcceeecccCChhHhhhhcccccc---ccCCCCceEEEEeeccc
Confidence 11234899999999999999999998 77666 59999998653
No 84
>KOG0120|consensus
Probab=99.34 E-value=1.1e-11 Score=99.77 Aligned_cols=148 Identities=21% Similarity=0.252 Sum_probs=119.7
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCc----eEEe-
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF----RLFC- 92 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~----~l~v- 92 (170)
.+.....++|++||...+++++.++.+.||++....+..+..+|.++||||-+|-++.....|+..+|+.. .|.|
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 34556789999999999999999999999999999999999889999999999999999999998888631 1110
Q ss_pred --------------------cCCCC-----------------CCCH-------------HHHHHHhccCCCeeEEEEeec
Q psy7847 93 --------------------GDLGN-----------------DVTD-------------ELLIRTFSKYPSFLKAKVVRD 122 (170)
Q Consensus 93 --------------------~nlp~-----------------~~~~-------------~~l~~~f~~~g~i~~~~~~~~ 122 (170)
-.|+. .++. |+++.-|+.||.|..|.++++
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 01111 1221 566677889999999999887
Q ss_pred CC---CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 123 KR---TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 123 ~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.. ..-..|-.||+|.+.+++++|...|+| ..++|+.|..+|=+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G---rKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTG---RKFANRTVVASYYD 490 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccC---ceeCCcEEEEEecC
Confidence 22 223466799999999999999999999 99999999988754
No 85
>KOG0113|consensus
Probab=99.34 E-value=6.7e-12 Score=93.79 Aligned_cols=67 Identities=31% Similarity=0.527 Sum_probs=63.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+-+||||+-|+++++|+.|+..|..||+|..|.|++++.+|+++|||||+|+++.+...|.+..++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3568999999999999999999999999999999999999999999999999999999999988763
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=7.4e-12 Score=91.89 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----ceEEec
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----FRLFCG 93 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----~~l~v~ 93 (170)
..++|+|+||++.+|+++|+++|+.||+|.+|.++++. .++++|||+|+++++++.|+ .|++. ..|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 46899999999999999999999999999999999874 45689999999999999999 56653 355554
No 87
>KOG4454|consensus
Probab=99.33 E-value=4.1e-13 Score=96.29 Aligned_cols=133 Identities=24% Similarity=0.372 Sum_probs=116.5
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------c
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------F 88 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------~ 88 (170)
..++.+++|||+|+...++++-|.++|-+.|+|..+.|..++ .+..+ ||||.|+++.++..|++.+++. .
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 345568899999999999999999999999999999998886 55666 9999999999999999999873 5
Q ss_pred eEEecC----CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCC
Q psy7847 89 RLFCGD----LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 89 ~l~v~n----lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 152 (170)
+++.++ |...++++.+.+.|+..|.+...++.++. ++.++.++++.+....+.-.++....+.
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhccc
Confidence 888887 88889999999999999999999998877 5778889999998888888888777663
No 88
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1.4e-11 Score=74.11 Aligned_cols=61 Identities=39% Similarity=0.626 Sum_probs=56.8
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+|+|+|||..+++++|+++|+.||.+..+.+..++ +.++++|||+|.+.++|..++..+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 48999999999999999999999999999998875 77889999999999999999988875
No 89
>KOG0126|consensus
Probab=99.31 E-value=1.8e-13 Score=95.54 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=72.7
Q ss_pred CcccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---
Q psy7847 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--- 86 (170)
Q Consensus 10 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--- 86 (170)
.+|+... .++..|||||||++.||.||.-+|++||.+.+|.+++|+.||.++||||+-|++..+..-|+..+|+
T Consensus 26 ~SWH~~Y---kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 26 KSWHQEY---KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred cchhhhc---ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 4565443 4477899999999999999999999999999999999999999999999999999999999988887
Q ss_pred -CceEEecCC
Q psy7847 87 -DFRLFCGDL 95 (170)
Q Consensus 87 -~~~l~v~nl 95 (170)
.++|.|...
T Consensus 103 ~gRtirVDHv 112 (219)
T KOG0126|consen 103 LGRTIRVDHV 112 (219)
T ss_pred cceeEEeeec
Confidence 467777544
No 90
>KOG0415|consensus
Probab=99.31 E-value=4.1e-12 Score=96.99 Aligned_cols=81 Identities=22% Similarity=0.413 Sum_probs=77.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
....|||..|++-++.++|.-+|+.||.|..|.+++|..+|.+..||||+|.+.+++++|.-+|++ ..+.+++|+|.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN---vLIDDrRIHVD 314 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN---VLIDDRRIHVD 314 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc---eeeccceEEee
Confidence 357999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++++
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8763
No 91
>KOG0121|consensus
Probab=99.30 E-value=6.4e-12 Score=83.10 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.....+.+|||+||+.-++||+|.++|+.+|+|..|.+-.++.+..+=|||||+|-+.++|..|+.-+++.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 34566889999999999999999999999999999999999988888899999999999999999988863
No 92
>KOG0226|consensus
Probab=99.29 E-value=3.5e-12 Score=93.36 Aligned_cols=140 Identities=49% Similarity=0.871 Sum_probs=116.1
Q ss_pred cEEEEcCCCCCccHHH-H--HHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 23 FRLFCGDLGNDVTDEL-L--IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~-l--~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
...+++++-.++..+- | ...|+.+-.+..-++.+++ .+..++++|+.|+......++...-++
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566666655555544 3 5667777777777777775 567788999999988877777654333
Q ss_pred --------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCC
Q psy7847 87 --------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 87 --------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 152 (170)
.++||.+.|..+++.+-|.+.|.+|......++.+|+-+++++||+||.|.+..++.+|+..|||
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g- 254 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG- 254 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc-
Confidence 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCeeEEEEe
Q psy7847 153 PHLFVGDLKTRSSI 166 (170)
Q Consensus 153 ~~~~~~~~~i~v~~ 166 (170)
+.+|+++|+..-
T Consensus 255 --kyVgsrpiklRk 266 (290)
T KOG0226|consen 255 --KYVGSRPIKLRK 266 (290)
T ss_pred --cccccchhHhhh
Confidence 999999998754
No 93
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=2.7e-11 Score=72.54 Aligned_cols=60 Identities=42% Similarity=0.638 Sum_probs=56.1
Q ss_pred EcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 27 CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 27 v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
|+|||..+++++|+++|+.||.+..+.+..++.++.++++|||+|.+.++|..++..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC
Confidence 579999999999999999999999999999877789999999999999999999988874
No 94
>KOG0125|consensus
Probab=99.28 E-value=1.7e-11 Score=92.77 Aligned_cols=71 Identities=25% Similarity=0.463 Sum_probs=64.0
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++.+...++|+|.|+|+..-+.||+.+|++||.|.+|.|+.+ ..-+|||+||+|++.+++++|-.++|+.
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcc
Confidence 3444556788999999999999999999999999999999987 4579999999999999999999999984
No 95
>KOG0112|consensus
Probab=99.25 E-value=5.2e-12 Score=105.87 Aligned_cols=156 Identities=17% Similarity=0.245 Sum_probs=131.6
Q ss_pred CCCCCCCCcccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHH
Q psy7847 3 GLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82 (170)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~ 82 (170)
+.++.+...+.....+....++||++||+..+++.+|+..|..+|.+.+|+|-+-. -+.-..|+||.|.+...+..++.
T Consensus 353 r~r~~rk~t~v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 353 RIRPFRKLTHVLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred CCCCcccccccccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccch
Confidence 34556667777888888889999999999999999999999999999999885542 35566799999999999888876
Q ss_pred HcCC-------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHH
Q psy7847 83 EMND-------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143 (170)
Q Consensus 83 ~~~~-------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~ 143 (170)
.+.+ ...+++++|+++.....|.+.|..||.|..|.+... .-|+++.|.+...++
T Consensus 432 e~s~~~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq 505 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQ 505 (975)
T ss_pred hhcCCccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccch
Confidence 5543 258999999999999999999999999999877433 348999999999999
Q ss_pred HHHHHhcCCCccccCC--eeEEEEeec
Q psy7847 144 RANKEMNEFPHLFVGD--LKTRSSITL 168 (170)
Q Consensus 144 ~a~~~l~~~~~~~~~~--~~i~v~~~~ 168 (170)
.|...|.| .-+|+ ++++|+++.
T Consensus 506 ~a~~~~rg---ap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 506 AATHDMRG---APLGGPPRRLRVDLAS 529 (975)
T ss_pred hhHHHHhc---CcCCCCCccccccccc
Confidence 99999999 66666 668887765
No 96
>KOG4207|consensus
Probab=99.24 E-value=2e-11 Score=87.08 Aligned_cols=71 Identities=28% Similarity=0.374 Sum_probs=65.9
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.++.+.-..|.|.||.+-++.++|+.+|++||.|-+|.|.+|++|+.++|||||.|.+..+|+.|+..+++
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG 77 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG 77 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc
Confidence 34445567799999999999999999999999999999999999999999999999999999999999986
No 97
>KOG0105|consensus
Probab=99.24 E-value=2.3e-11 Score=85.42 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=69.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..+++||+|||.++.+.+|+.+|.+||.|..|.+-.. ..+..||||+|++..+|+.|+..-+| ..+++.+|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdG---Ydydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDG---YDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccc---cccCcceEEEE
Confidence 4578999999999999999999999999999987432 23456999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 79 fprg 82 (241)
T KOG0105|consen 79 FPRG 82 (241)
T ss_pred eccC
Confidence 8764
No 98
>KOG0128|consensus
Probab=99.24 E-value=5.5e-13 Score=111.11 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=123.6
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc----CCCceEEecCCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM----NDDFRLFCGDLGN 97 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~----~~~~~l~v~nlp~ 97 (170)
..++|++||++.+.+++|...|..+|.+..+++......++.+|.||+.|..++.+.+++... -++..++|+|.|+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf 746 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPF 746 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCC
Confidence 346899999999999999999999998888887655557889999999999999999998643 3578999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 98 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..|.+.++.++..+|.+....++..+ .|+++|.|+|.|.++.++.++....+. ..++-+.+.|.+
T Consensus 747 ~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~---~~~rE~~~~v~v 811 (881)
T KOG0128|consen 747 QGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV---AGKRENNGEVQV 811 (881)
T ss_pred CCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh---hhhhhcCccccc
Confidence 99999999999999999998877766 799999999999999999999988888 666666666655
No 99
>KOG0130|consensus
Probab=99.23 E-value=2.9e-11 Score=80.72 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.|||.++-+.+++++|.+.|..||+|.++.+-.++.+|..+|||.|+|++..+|.+|+..+|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999999999986
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.5e-10 Score=69.82 Aligned_cols=63 Identities=43% Similarity=0.673 Sum_probs=57.2
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+|+|+|||..+++++|+++|+.+|.+..+.+..++. +..+++|||+|.+.++|..|+..+++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 479999999999999999999999999999998753 477899999999999999999988864
No 101
>KOG1456|consensus
Probab=99.20 E-value=3e-09 Score=82.11 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=114.8
Q ss_pred CCCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----------
Q psy7847 19 DENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------- 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------- 87 (170)
..+...++|.+|.. .++.+.|.++|..||.|+.|++++.+ .|.|.|++.+...+++++..|++.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 34567899999985 48999999999999999999999876 478999999999999999988862
Q ss_pred ------------------------------------------------ceEEecCCCCCCCHHHHHHHhccCCCe-eEEE
Q psy7847 88 ------------------------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSF-LKAK 118 (170)
Q Consensus 88 ------------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i-~~~~ 118 (170)
..|+.-|.|..+||+.|..+|..-+.. ..++
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 388888999999999999999766543 3444
Q ss_pred EeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC---eeEEEEeecc
Q psy7847 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD---LKTRSSITLK 169 (170)
Q Consensus 119 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~---~~i~v~~~~~ 169 (170)
+...+ +.+ ...+.++|++.++|..|+..+|.+++..-+| -.+|..++++
T Consensus 439 vFp~k-ser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 439 VFPLK-SER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred eeccc-ccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 44333 222 2358899999999999999999977666666 3566666553
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=8.2e-11 Score=93.54 Aligned_cols=65 Identities=22% Similarity=0.402 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCH--HHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP--QDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~--~~a~~~~~~~~~~ 87 (170)
.....+||||||++++++++|...|..||.|.++.|++ .+| +|||||+|.+. .++.+|+..|++.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 34457899999999999999999999999999999994 466 99999999987 6899999999873
No 103
>KOG0107|consensus
Probab=99.19 E-value=5.5e-11 Score=82.72 Aligned_cols=63 Identities=33% Similarity=0.583 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCc
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~ 88 (170)
-.++|||+||+.++++.||+..|..||++.++-|-+. ..|||||+|+++.+|+.|+..|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCcc
Confidence 4678999999999999999999999999998877664 46999999999999999999999853
No 104
>KOG4211|consensus
Probab=99.18 E-value=8.4e-10 Score=87.61 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=107.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE-EEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------ 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~-i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------ 86 (170)
.....|.+++||+.||++||.++|...-.+.. |.++.+ ..+++.+-|||+|++.+.|+.|+.....
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 46788999999999999999999998776555 556666 4678999999999999999999852210
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 87 -------------------------------------------------------------------------------- 86 (170)
Q Consensus 87 -------------------------------------------------------------------------------- 86 (170)
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence
Q ss_pred ---------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy7847 87 ---------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145 (170)
Q Consensus 87 ---------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 145 (170)
...++.++||+..++.++...|+..-.+ .+.+-..+ ++...|-|.|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHhh
Confidence 0167778999999999999999876444 55555454 788899999999999999999
Q ss_pred HHHhcCCCccccCCeeEE
Q psy7847 146 NKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 146 ~~~l~~~~~~~~~~~~i~ 163 (170)
+.+ ++ ..++.+-|.
T Consensus 338 msk-d~---anm~hrYVE 351 (510)
T KOG4211|consen 338 MGK-DG---ANMGHRYVE 351 (510)
T ss_pred hcc-CC---cccCcceee
Confidence 874 33 444444443
No 105
>KOG0146|consensus
Probab=99.15 E-value=9.4e-11 Score=86.71 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=75.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..+.|||+.|...-.|+|++++|+.||.|..|.+++.+ ++.++|+|||.|.+..+|+.||..|||....-.....+.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 35789999999999999999999999999999999987 79999999999999999999999999987666677788888
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
+++.
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 7763
No 106
>KOG0108|consensus
Probab=99.11 E-value=4.1e-10 Score=90.13 Aligned_cols=71 Identities=31% Similarity=0.507 Sum_probs=66.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----CceEEec
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFRLFCG 93 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----~~~l~v~ 93 (170)
+.+||||+|+++++++|.++|...|.|.++++..|+.+|..+||+|++|.+.+++..|++.+++ .+.|.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEee
Confidence 8899999999999999999999999999999999999999999999999999999999999996 3566664
No 107
>KOG4208|consensus
Probab=99.11 E-value=3.4e-10 Score=80.71 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=69.8
Q ss_pred ceEEecCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.-+++..+|..+.+.++...|.++ |.+...++-+++.+|.++|||||+|.+++.|.-|.+.||+ ..++++.|.+.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN---YLl~e~lL~c~v 126 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN---YLLMEHLLECHV 126 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh---hhhhhheeeeEE
Confidence 367888999999999999999888 6677777879999999999999999999999999999999 999999999887
Q ss_pred e
Q psy7847 167 T 167 (170)
Q Consensus 167 ~ 167 (170)
=
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 4
No 108
>KOG4206|consensus
Probab=99.10 E-value=3.7e-10 Score=81.64 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=71.2
Q ss_pred cCCCceEEecCCCCCCCHHHHHH----HhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 84 MNDDFRLFCGDLGNDVTDELLIR----TFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 84 ~~~~~~l~v~nlp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
++.+.||||.||+..+..++|++ +|++||.|..|...+ +.+.+|-|||.|.+.+.|..|+..|+| ..+-|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~g---fpFyg 79 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQG---FPFYG 79 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcC---CcccC
Confidence 34445999999999999998888 999999999998765 456799999999999999999999999 89999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
+++++-||.+
T Consensus 80 K~mriqyA~s 89 (221)
T KOG4206|consen 80 KPMRIQYAKS 89 (221)
T ss_pred chhheecccC
Confidence 9999999864
No 109
>KOG0132|consensus
Probab=99.08 E-value=3.4e-10 Score=93.98 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=68.9
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
++||||+.|+..+++.+|..+|+.||.|++|.+.. ++|+|||......+|.+|+++|++ .-+.++.|++.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n---~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSN---VKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhc---ccccceeeEEee
Confidence 36999999999999999999999999999998854 388999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 492 a~g 494 (894)
T KOG0132|consen 492 AVG 494 (894)
T ss_pred ecc
Confidence 863
No 110
>KOG0111|consensus
Probab=99.04 E-value=3.6e-10 Score=81.44 Aligned_cols=74 Identities=26% Similarity=0.491 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----ceEEe
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----FRLFC 92 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----~~l~v 92 (170)
....++|||++|..++++..|...|-+||.|.+|+++.|..+.+.+||+||+|...++|..|+..++.. +++.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 345789999999999999999999999999999999999989999999999999999999999999874 45655
No 111
>KOG4660|consensus
Probab=99.01 E-value=5e-09 Score=84.36 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=59.1
Q ss_pred cccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 13 ~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+...+.++|+|-|||.++++++|+.+|+.||+|.+++. +...++.+||+|-|..+|++|++.++.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~ 134 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNR 134 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHH
Confidence 556666677899999999999999999999999999998655 344578999999999999999986653
No 112
>KOG1456|consensus
Probab=99.00 E-value=2.9e-08 Score=76.74 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=110.2
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-----------
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----------- 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----------- 86 (170)
.+..+-.|+|++|-..+++.+|.+..+.||++..+..+..+ ..|.|+|++.+.|+.++.-.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34556789999999999999999999999999888776553 4699999999998888742110
Q ss_pred -------------------CceEEec--CCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q psy7847 87 -------------------DFRLFCG--DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145 (170)
Q Consensus 87 -------------------~~~l~v~--nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 145 (170)
+..|.+. |-=+.+|-+-|..++...|.+.+|.+.+. ++. -|.|+|++.+.|++|
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRA 175 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHH
Confidence 1233333 44457899999999999999999988765 232 489999999999999
Q ss_pred HHHhcCCCccccCCeeEEEEeeccC
Q psy7847 146 NKEMNEFPHLFVGDLKTRSSITLKG 170 (170)
Q Consensus 146 ~~~l~~~~~~~~~~~~i~v~~~~~~ 170 (170)
...|||..+. -|=..|||.||.++
T Consensus 176 k~alNGADIY-sGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 176 KAALNGADIY-SGCCTLKIEYAKPT 199 (494)
T ss_pred Hhhccccccc-ccceeEEEEecCcc
Confidence 9999993322 23378999998764
No 113
>KOG4208|consensus
Probab=99.00 E-value=3.3e-09 Score=75.77 Aligned_cols=88 Identities=18% Similarity=0.349 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcC-CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----CceEEecCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFRLFCGDL 95 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~-g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----~~~l~v~nl 95 (170)
...-++++.+|.-..+.++..+|.++ |++...++.|++.||.++|||||+|++++.|.-+.+.||+ ...|.+.-+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34569999999999999999999887 7888999989999999999999999999999999999997 457777788
Q ss_pred CCC-CCHHHHHHHh
Q psy7847 96 GND-VTDELLIRTF 108 (170)
Q Consensus 96 p~~-~~~~~l~~~f 108 (170)
|+. .-+..+.+.+
T Consensus 128 ppe~~v~~~~~k~~ 141 (214)
T KOG4208|consen 128 PPEQKVEKNLKKVS 141 (214)
T ss_pred Cchhhhhhhhhhhc
Confidence 887 5555555555
No 114
>KOG0120|consensus
Probab=99.00 E-value=1.1e-09 Score=88.35 Aligned_cols=140 Identities=21% Similarity=0.367 Sum_probs=118.0
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcC-----------C-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC--
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKY-----------P-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN-- 85 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~-----------g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~-- 85 (170)
.+++.++++++|+.++++.+-.+|..- | .+..+.+- .-+.+||++|.+.++|..++...-
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccchh
Confidence 446789999999999999999998642 2 24444442 345799999999999998875221
Q ss_pred --C---------------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCC
Q psy7847 86 --D---------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124 (170)
Q Consensus 86 --~---------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 124 (170)
+ ...+++++||...++.++.++...||.+....+..+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 0 24888999999999999999999999999999999988
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 125 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.+.++||||.+|.+......|+..+|| +.++++.+.|-.|.
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnG---m~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNG---MQLGDKKLVVQRAI 367 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccch---hhhcCceeEeehhh
Confidence 889999999999999999999999999 99999999887664
No 115
>KOG0109|consensus
Probab=98.97 E-value=8.8e-10 Score=82.40 Aligned_cols=70 Identities=21% Similarity=0.436 Sum_probs=64.8
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
..|||+|||..+++.+|+.+|++||.+..|.|+++ ||||..++..++..|+..||| ..|.|..|.|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhg---YtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHG---YTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccc---ceecceEEEEEec
Confidence 36899999999999999999999999999999875 899999999999999999999 9999998888765
Q ss_pred c
Q psy7847 168 L 168 (170)
Q Consensus 168 ~ 168 (170)
.
T Consensus 72 k 72 (346)
T KOG0109|consen 72 K 72 (346)
T ss_pred c
Confidence 4
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=4e-09 Score=64.07 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=45.5
Q ss_pred HHHHHHHhh----cCCCeeEEE-EEecCCC--CCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 36 DELLIRTFS----KYPSFLKAK-VVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 36 ~~~l~~~f~----~~g~v~~i~-~~~~~~~--~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++|+++|+ .||.+.++. +..++.+ +.++|+|||.|.+.++|.+|+..+|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578888888 999999995 6666656 889999999999999999999999974
No 117
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.93 E-value=1.5e-08 Score=65.03 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=68.4
Q ss_pred ceEEecCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC-eeEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD-LKTRS 164 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~-~~i~v 164 (170)
.||+++|+|...+.++|.+++.. .|......++-|..++.+.|||||.|.++++|.+-.+.+||..+....+ +...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 48999999999999999999844 3667778888898889999999999999999999999999976655544 55577
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
+||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 118
>KOG0153|consensus
Probab=98.91 E-value=4.8e-09 Score=80.13 Aligned_cols=74 Identities=18% Similarity=0.339 Sum_probs=66.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
.+|||++|...+++.+|+..|.+||.|..+.+... +++|||+|.+.++|+.|..+.-+ ..++.|.+|+|-|.
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n--~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN--KLVINGFRLKIKWG 300 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc--eeeecceEEEEEeC
Confidence 59999999999999999999999999999988765 56999999999999999875444 49999999999997
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 64
No 119
>KOG0533|consensus
Probab=98.90 E-value=9.2e-09 Score=76.37 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
.+..+|+|.|||+.+.++||+++|..||.+..+.+..++ .+.+.|.|-|.|...++|.+|++.+|| ..+.|+++++
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g---v~ldG~~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG---VALDGRPMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC---cccCCceeee
Confidence 345789999999999999999999999988888888886 899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
....+
T Consensus 157 ~~i~~ 161 (243)
T KOG0533|consen 157 EIISS 161 (243)
T ss_pred EEecC
Confidence 87643
No 120
>KOG4210|consensus
Probab=98.84 E-value=4.4e-09 Score=80.45 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=123.9
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC--------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND-------------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~-------------- 86 (170)
...+.|++++..++.+.+...++...|......+........+++++++.|...+.+..++.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 356799999999999998999999999887777777666788999999999999999988864321
Q ss_pred -----------------CceEE-ecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy7847 87 -----------------DFRLF-CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148 (170)
Q Consensus 87 -----------------~~~l~-v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 148 (170)
..+++ +.+++..+++++|+..|..+|.|..++++.++.++..+|+|++.|........++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 12555 999999999999999999999999999999999999999999999999999888886
Q ss_pred hcCCCccccCCeeEEEEeec
Q psy7847 149 MNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 149 l~~~~~~~~~~~~i~v~~~~ 168 (170)
.. ..++++++.+.+..
T Consensus 247 -~~---~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 247 -QT---RSIGGRPLRLEEDE 262 (285)
T ss_pred -cc---CcccCcccccccCC
Confidence 66 88888888877654
No 121
>KOG0226|consensus
Probab=98.74 E-value=2.7e-08 Score=73.25 Aligned_cols=86 Identities=57% Similarity=1.034 Sum_probs=74.1
Q ss_pred CCcccccCC--CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 9 ISSWIKKTC--EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 9 ~~~~~~~~~--~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+|.++.. -+..+++||++.|.-+++.+.|...|.+|-.....++++++.+|+++||+||.|.++.++.+|+.++++
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 345655533 356789999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CceEEecCCCC
Q psy7847 87 DFRLFCGDLGN 97 (170)
Q Consensus 87 ~~~l~v~nlp~ 97 (170)
-||++=|-
T Consensus 255 ---kyVgsrpi 262 (290)
T KOG0226|consen 255 ---KYVGSRPI 262 (290)
T ss_pred ---cccccchh
Confidence 45665443
No 122
>KOG0415|consensus
Probab=98.72 E-value=2.5e-08 Score=76.61 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----CceEEecC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFRLFCGD 94 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----~~~l~v~n 94 (170)
..+...|||--|.+-++.++|.-+|+.||+|.+|.+++++.+|.+-.||||+|.+.++.++|.-.+.+ .++++| .
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV-D 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV-D 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe-e
Confidence 44567899999999999999999999999999999999999999999999999999999999987775 345555 3
Q ss_pred CCCCCCH
Q psy7847 95 LGNDVTD 101 (170)
Q Consensus 95 lp~~~~~ 101 (170)
+..+++.
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 3333433
No 123
>KOG1365|consensus
Probab=98.69 E-value=3.5e-07 Score=71.08 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=100.9
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--------------- 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--------------- 86 (170)
...+..++||+..++.+|..+|+...-..--+.+-....|...+.+.|.|-|++.-+-+++....
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 34578899999999999999998754332222222224577889999999999987777764321
Q ss_pred ---------------------CceEEecCCCCCCCHHHHHHHhcc---C-CCeeEEEEeecCCCCCcccEEEEEecCHHH
Q psy7847 87 ---------------------DFRLFCGDLGNDVTDELLIRTFSK---Y-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141 (170)
Q Consensus 87 ---------------------~~~l~v~nlp~~~~~~~l~~~f~~---~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~ 141 (170)
.-.+..++||+++++.++..+|.+ . |..+.+.+.+.+ +|++.|-|||.|..+++
T Consensus 140 ~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~ 218 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEED 218 (508)
T ss_pred hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHH
Confidence 126777899999999999999953 2 244566555544 78999999999999999
Q ss_pred HHHHHHHhcCCCccccCCeeEE
Q psy7847 142 FIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 142 a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
|+.|+.+-. ..+|.|.|.
T Consensus 219 aq~aL~khr----q~iGqRYIE 236 (508)
T KOG1365|consen 219 AQFALRKHR----QNIGQRYIE 236 (508)
T ss_pred HHHHHHHHH----HHHhHHHHH
Confidence 999998644 445544443
No 124
>KOG2193|consensus
Probab=98.69 E-value=2.8e-09 Score=83.40 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=103.8
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
++|++||.+.++.+++.++|+..- ....-.++ ..+|+||.+.+...+.++++.++++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 689999999999999999997642 12222222 2479999999999999999987763
Q ss_pred -----ceEEecCCCCCCCHHHHHHHhccCCCeeEEE-EeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 88 -----FRLFCGDLGNDVTDELLIRTFSKYPSFLKAK-VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 88 -----~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
+.+-++|+|+...++.|..+...||.++.|. +..+++.- ..=|+|.+.+.+..|+..++| ..+.+..
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g---~Q~en~~ 148 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNG---PQLENQH 148 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcc---hHhhhhh
Confidence 4788899999999999999999999999885 34443221 223688999999999999999 9999988
Q ss_pred EEEEe
Q psy7847 162 TRSSI 166 (170)
Q Consensus 162 i~v~~ 166 (170)
++++|
T Consensus 149 ~k~~Y 153 (584)
T KOG2193|consen 149 LKVGY 153 (584)
T ss_pred hhccc
Confidence 88876
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=1.7e-07 Score=60.21 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=57.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhc--CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~--~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
++|+|+|+|...|.++|.+++.. .|...-+.++.|-.++.+.|||||.|.+++.+.+.....++
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC
Confidence 57999999999999999999864 46777888999988899999999999999999999998886
No 126
>KOG4661|consensus
Probab=98.66 E-value=7.2e-08 Score=78.28 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=71.1
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+.|||++|...+...+|+.+|++||.|.-..++.+.-+...+.|+||++.+..+|.+||+.||- ..+.|+-|+|.-+
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr---TELHGrmISVEka 482 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR---TELHGRMISVEKA 482 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh---hhhcceeeeeeec
Confidence 5999999999999999999999999999999888766666788999999999999999999999 9999999999765
No 127
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.63 E-value=1.5e-07 Score=54.44 Aligned_cols=44 Identities=34% Similarity=0.610 Sum_probs=38.5
Q ss_pred HHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 39 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 39 l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
|.++|++||+|.++.+...+ +++|||+|.+.++|..|++.+|+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 67899999999999997653 689999999999999999999874
No 128
>KOG1548|consensus
Probab=98.58 E-value=2.7e-07 Score=70.76 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=70.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
..|||+|||.++|-+++.++|+.+|.|. .|.+.++. .|..+|-|++.|-..++..-|++.|++ ..++|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe---~~~rg 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDE---DELRG 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCc---ccccC
Confidence 4699999999999999999999999874 36788887 599999999999999999999999999 99999
Q ss_pred eeEEEEeec
Q psy7847 160 LKTRSSITL 168 (170)
Q Consensus 160 ~~i~v~~~~ 168 (170)
+.|+|..|.
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999998763
No 129
>KOG4307|consensus
Probab=98.55 E-value=9e-07 Score=73.46 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=64.7
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.|-+.|+|+.++-+||-++|..|-.+..-..++-...|.+.|-|-|.|++.++|..|...+++ ..|+++.|++.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~---~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDG---QKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhcccc---CcccceeEEEEe
Confidence 577889999999999999999997665433333445899999999999999999999999999 999999998865
No 130
>KOG4205|consensus
Probab=98.55 E-value=7.6e-08 Score=74.18 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=66.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
....|||++|+++++++.|+.-|.+||.+..|.+++|+.++.++|++||+|.+.+....++..-. ..+.++.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~----h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART----HKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc----cccCCccccce
Confidence 45689999999999999999999999999999999999999999999999999988888877433 45666666554
Q ss_pred ee
Q psy7847 166 IT 167 (170)
Q Consensus 166 ~~ 167 (170)
-+
T Consensus 81 ~a 82 (311)
T KOG4205|consen 81 RA 82 (311)
T ss_pred ec
Confidence 33
No 131
>KOG4660|consensus
Probab=98.54 E-value=6.6e-08 Score=78.04 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=63.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
..+.+|+|-|||..+++++|.++|+.||+|..++.... .+|.+||+|.+..+|+.|+++||+ ..+.|+.++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~---~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNR---REIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHH---HHhhhhhhc
Confidence 44679999999999999999999999999999766443 489999999999999999999999 888888776
No 132
>KOG0116|consensus
Probab=98.54 E-value=1.7e-07 Score=74.82 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC---CCceEEe
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN---DDFRLFC 92 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~---~~~~l~v 92 (170)
..+|||+|||.++++++|+++|..||.|....|......+....||||+|.+.+.+..++.... +.++|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEE
Confidence 3459999999999999999999999999998886654445555999999999999999997552 3445555
No 133
>KOG0151|consensus
Probab=98.52 E-value=2.3e-07 Score=76.91 Aligned_cols=78 Identities=24% Similarity=0.493 Sum_probs=69.3
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecC---CCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK---RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
...|||+||++.+++..|-..|+.||.+..++++-.+ +....+-++||.|-+..++++|++.|+| ..+.+..++
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg---~iv~~~e~K 250 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG---IIVMEYEMK 250 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc---eeeeeeeee
Confidence 4699999999999999999999999999998876443 2344567899999999999999999999 999999999
Q ss_pred EEee
Q psy7847 164 SSIT 167 (170)
Q Consensus 164 v~~~ 167 (170)
+-|+
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 9987
No 134
>KOG0116|consensus
Probab=98.52 E-value=3.1e-07 Score=73.41 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=64.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
.+|||.|||.+++..+|++.|..||.|....|......+....||||+|.+..+++.|+.+- - ..++++++.|.-.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p---~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-P---LEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-c---cccCCeeEEEEec
Confidence 36999999999999999999999999998776654322333389999999999999999964 4 9999999998754
Q ss_pred c
Q psy7847 168 L 168 (170)
Q Consensus 168 ~ 168 (170)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 135
>KOG4307|consensus
Probab=98.50 E-value=3.6e-07 Score=75.71 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=112.4
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
.+.+.+-+.+.+.+..+.+++++|...- +....+..+...+...|-++|.|....++.+|++.-+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 3456678889999999999999996533 33444444544556689999999999999999874331
Q ss_pred ----------------------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeE-EEE
Q psy7847 87 ----------------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKV 119 (170)
Q Consensus 87 ----------------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~ 119 (170)
..+|||..||..+++.++-.+|...-.+++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 139999999999999999999987777776 666
Q ss_pred eecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 120 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.+.+ ++.-++.|||.|..++++..|..--+. ...|.+.|+|.-
T Consensus 468 t~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k---~y~G~r~irv~s 510 (944)
T KOG4307|consen 468 TRLP-TDLLRPAAFVAFIHPTAPLTASSVKTK---FYPGHRIIRVDS 510 (944)
T ss_pred ccCC-cccccchhhheeccccccchhhhcccc---cccCceEEEeec
Confidence 5555 677788999999998888888876666 888889998864
No 136
>KOG0132|consensus
Probab=98.50 E-value=2.3e-07 Score=77.56 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=54.7
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
++|||||+|+.++++.||.++|+.||.|++|.++.. +++|||.+.+..+|.+|+..+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhc
Confidence 689999999999999999999999999999988765 48999999999999999988874
No 137
>KOG4209|consensus
Probab=98.50 E-value=2.5e-07 Score=68.73 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
.+...+|++|+.+.++.++++..|+.+|.+..+.++.|+..+.++|++||+|.+.+.++.++. ||+ ..+-++.++|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g---s~i~~~~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG---SEIPGPAIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC---ccccccccee
Confidence 345699999999999999999999999999999999999888899999999999999999999 999 9999999999
Q ss_pred Eee
Q psy7847 165 SIT 167 (170)
Q Consensus 165 ~~~ 167 (170)
++.
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 874
No 138
>KOG1457|consensus
Probab=98.46 E-value=1.5e-06 Score=63.18 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=63.5
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEee-cCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR-DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
.+||||++||.++-..+|..+|..|...+.+.+-. ++.....+-+||++|.+.++|..|.+.|||..--.-.+..+++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 57999999999999999999999998888776533 33333345689999999999999999999932222234667776
Q ss_pred eec
Q psy7847 166 ITL 168 (170)
Q Consensus 166 ~~~ 168 (170)
++.
T Consensus 114 lAK 116 (284)
T KOG1457|consen 114 LAK 116 (284)
T ss_pred ehh
Confidence 653
No 139
>KOG0106|consensus
Probab=98.43 E-value=1.9e-07 Score=68.05 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=63.5
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.+||+++|+.+.+.+|.++|..||.+..+.+. .||+||.|.+..+|..|+..+|+ ..+++..+.|.|+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~---~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDG---KELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcC---ceecceeeeeeccc
Confidence 58999999999999999999999999998763 46889999999999999999999 99999888888876
No 140
>KOG4676|consensus
Probab=98.40 E-value=1.6e-07 Score=73.02 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=99.7
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC---CCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
..|.|.||.++++.+++..+|+.+|.|.++.++..... ......|||.|.|...+..|...-|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37999999999999999999999999999999774322 345678999999999988876533321
Q ss_pred ----------------------------------------------------------------ceEEecCCCCCCCHHH
Q psy7847 88 ----------------------------------------------------------------FRLFCGDLGNDVTDEL 103 (170)
Q Consensus 88 ----------------------------------------------------------------~~l~v~nlp~~~~~~~ 103 (170)
.+++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2788899999999999
Q ss_pred HHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 104 l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
+.+.|..+|.+.+..+.... ..-+|-+.|....+...|+. ++|
T Consensus 168 ~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~g 210 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHG 210 (479)
T ss_pred hhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcc
Confidence 99999999999988775432 23467789988888888887 455
No 141
>KOG0533|consensus
Probab=98.34 E-value=1.9e-06 Score=64.12 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+....+|+|.|||+.+++++|+++|..||.+..+.+-.++ .|.+.|.|-|.|...++|..+++.+++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC
Confidence 33445789999999999999999999999988888888775 899999999999999999999999987
No 142
>KOG4661|consensus
Probab=98.31 E-value=1.5e-06 Score=70.81 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=60.4
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.++|.+|+..+-..+|+++|++||.|...+++.+..+.-.+.|+||++.+.++|.+++++||.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 46799999999999999999999999999999999887888899999999999999999998874
No 143
>KOG0153|consensus
Probab=98.26 E-value=4e-06 Score=64.47 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+|||++|-..+++.+|++-|.+||.+.++.+...+ +.|||+|.+.++|+.|.+....
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc
Confidence 45679999998899999999999999999999997654 5899999999999999987765
No 144
>KOG4454|consensus
Probab=98.22 E-value=6e-07 Score=64.99 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=66.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|+|.|+...++++-|.++|=+.|.|..+.|..++ .+..+ ||||.|.++-+..-|++.+|| ..+.+..+++..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng---~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENG---DDLEEDEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhccc---chhccchhhccc
Confidence 4689999999999999999999999999999888776 56666 999999999999999999999 888887777654
No 145
>KOG0151|consensus
Probab=98.20 E-value=5.6e-06 Score=68.98 Aligned_cols=66 Identities=27% Similarity=0.538 Sum_probs=58.0
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC---CCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+||+||++.++++.|-..|+.||++.+++++.-+.. ...+-++||.|.+..++++|++.+++.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce
Confidence 345999999999999999999999999999999887643 244678999999999999999999984
No 146
>KOG4209|consensus
Probab=98.15 E-value=4e-06 Score=62.34 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+...+||+|+.+.++.+++..-|+.||.+..+.+..++..|.+++|+||+|.+.+.+..++. +++
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g 164 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG 164 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC
Confidence 34557789999999999999999999999999999999999888999999999999999999997 665
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.12 E-value=1.2e-05 Score=52.62 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=44.1
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCC--CccccCCeeEEEEe
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF--PHLFVGDLKTRSSI 166 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~~~~i~v~~ 166 (170)
.|.+.+++..++.++|+..|+.||.|.+|.+.+.. ..|+|.|.+.++|+.|+..+... ....+.+..+.+.+
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57888899999999999999999999999886543 25889999999999999877652 12355555555543
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=4.8e-05 Score=47.12 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=46.2
Q ss_pred ceEEecCCCCCCCHHH----HHHHhccCCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 88 FRLFCGDLGNDVTDEL----LIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~----l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
..|+|.|||-+.+... |++++..+|. +..+ ..+.|++.|.+.+.|.+|.+.|+| ...-|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmeg---EdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEG---EDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcc---cccccceE
Confidence 3689999999888654 5566667765 4443 135799999999999999999999 99999999
Q ss_pred EEEeec
Q psy7847 163 RSSITL 168 (170)
Q Consensus 163 ~v~~~~ 168 (170)
.|++..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999873
No 149
>KOG1995|consensus
Probab=97.92 E-value=1e-05 Score=62.54 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccc
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 156 (170)
....++||-++|..+++.++...|.+++.|. .|.+.+|++++.++|-|.|+|.+...|+.|+..+++ +.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag---kd 140 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG---KD 140 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc---cc
Confidence 3456999999999999999999999998773 356778888999999999999999999999999999 99
Q ss_pred cCCeeEEEEeecc
Q psy7847 157 VGDLKTRSSITLK 169 (170)
Q Consensus 157 ~~~~~i~v~~~~~ 169 (170)
+++..|+|+.+.+
T Consensus 141 f~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 141 FCGNTIKVSLAER 153 (351)
T ss_pred ccCCCchhhhhhh
Confidence 9999999988754
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.90 E-value=4e-05 Score=59.01 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=61.9
Q ss_pred ceEEecCCCCCCCHHH------HHHHhccCCCeeEEEEeecCC-CCCcccE--EEEEecCHHHHHHHHHHhcCCCccccC
Q psy7847 88 FRLFCGDLGNDVTDEL------LIRTFSKYPSFLKAKVVRDKR-TNKTKGF--GFVSFKDPQDFIRANKEMNEFPHLFVG 158 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~-~~~~~g~--afv~f~~~~~a~~a~~~l~~~~~~~~~ 158 (170)
.-+||-++|+.+..|+ -.+.|++||.|..|.+.+... .....+. .+++|.+.++|.+||...+| ..++
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg---s~~D 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG---SLLD 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc---cccc
Confidence 4788999998877666 246899999999998865432 1222222 48999999999999999999 9999
Q ss_pred CeeEEEEeec
Q psy7847 159 DLKTRSSITL 168 (170)
Q Consensus 159 ~~~i~v~~~~ 168 (170)
|+.|+.+|-+
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999999864
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=5.2e-05 Score=49.62 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=37.2
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..|++.+++..++-++|++.|+.||.|..|.+.+.. ..|||.|.+++.|..++..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHH
Confidence 368899999999999999999999999998886543 368999999999999987554
No 152
>KOG0128|consensus
Probab=97.69 E-value=1.8e-06 Score=72.97 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=104.6
Q ss_pred CCcEEEEcCCCCCccHH-HHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 21 NDFRLFCGDLGNDVTDE-LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~-~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
..+...+.++.+..... ..+..|+.+|.++.++....+......-++++++....+++.+..--.+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 34556777886665554 5688899999999998876332222222677877777777766542211
Q ss_pred -----------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy7847 87 -----------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149 (170)
Q Consensus 87 -----------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 149 (170)
..+.|++||++.+.+++|...|..+|.+..+++......+..+|+|++.|..++.+.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 138899999999999999999999999888776544446788999999999999999999977
Q ss_pred cCCCccccCCeeEEE
Q psy7847 150 NEFPHLFVGDLKTRS 164 (170)
Q Consensus 150 ~~~~~~~~~~~~i~v 164 (170)
.+ .+++...+-+
T Consensus 730 d~---~~~gK~~v~i 741 (881)
T KOG0128|consen 730 DS---CFFGKISVAI 741 (881)
T ss_pred hh---hhhhhhhhhe
Confidence 77 6666544443
No 153
>KOG4849|consensus
Probab=97.64 E-value=4.8e-05 Score=58.83 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCC--CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
.+-+||+||-+.+|++||.+.....| .+.++++..++.+|+++|||.|...+...+++.++-++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 45599999999999999999998877 67889999999999999999999999999999987655
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00049 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHH
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~ 81 (170)
+.|-|.|.|++..+..| ..|..||.|.++.+.. ...+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57889999988876554 4788899999987752 2358999999999999875
No 155
>KOG0129|consensus
Probab=97.46 E-value=0.00046 Score=55.95 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhh-cCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHH
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~-~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~ 82 (170)
-.+.+|||||+||.-++.++|..+|+ .||.|..+-|=.|..-+..+|.|-|+|.+..+..+|+.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35578999999999999999999998 69999999998886678999999999999999999986
No 156
>KOG2314|consensus
Probab=97.44 E-value=0.00039 Score=57.02 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=57.5
Q ss_pred CceEEecCCCCC------CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC-C
Q psy7847 87 DFRLFCGDLGND------VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG-D 159 (170)
Q Consensus 87 ~~~l~v~nlp~~------~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-~ 159 (170)
..+++|.|.|.- .-+.-|.++|+++|.+....++.+.. |..+||.|++|.+..+|+.|++.||| +.+. +
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G---~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNG---KRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhccc---ceeccc
Confidence 357888888853 22355778999999999998887764 55899999999999999999999999 5444 3
Q ss_pred eeEEE
Q psy7847 160 LKTRS 164 (170)
Q Consensus 160 ~~i~v 164 (170)
+...|
T Consensus 134 Htf~v 138 (698)
T KOG2314|consen 134 HTFFV 138 (698)
T ss_pred ceEEe
Confidence 44333
No 157
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.41 E-value=0.0013 Score=40.71 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
+.|..++..+|+ .|......||.++|+.||.| .|..+.+. .|||...+.+.+..++..+.
T Consensus 4 ~~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 4 PQPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp ---SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 445556677776 99999999999999999976 46677663 69999999999998887664
No 158
>KOG1855|consensus
Probab=97.33 E-value=0.00047 Score=54.75 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=54.4
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeec---CCCC--Cc--------ccEEEEEecCHHHHHHHHHHhcC
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD---KRTN--KT--------KGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~--~~--------~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
++|.+.|||.+-.-+.|.++|+.+|.|..|+++.. +.+. .+ +-+|+|+|...+.|.+|.+.++.
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 59999999999999999999999999999999876 3222 22 33699999999999999998865
No 159
>KOG2314|consensus
Probab=97.33 E-value=0.00099 Score=54.73 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCCcEEEEcCCCCC--ccHH----HHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----
Q psy7847 18 EDENDFRLFCGDLGND--VTDE----LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---- 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~--~t~~----~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---- 87 (170)
++.-+..|+|.|.|-- .-.+ -|.++|+++|++.++.++.+. .|.++||.|++|.+..+|..|++.+||.
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3455667999999852 2233 345779999999999999885 5559999999999999999999999984
Q ss_pred -ceEEec
Q psy7847 88 -FRLFCG 93 (170)
Q Consensus 88 -~~l~v~ 93 (170)
++++|+
T Consensus 133 nHtf~v~ 139 (698)
T KOG2314|consen 133 NHTFFVR 139 (698)
T ss_pred cceEEee
Confidence 566665
No 160
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.33 E-value=0.002 Score=40.07 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCccHHHHH----HHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----ceEEec
Q psy7847 23 FRLFCGDLGNDVTDELLI----RTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----FRLFCG 93 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~----~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----~~l~v~ 93 (170)
..|+|.|||.+.+...|+ .+++.+| .|.++. .+.|.|.|.+++.|.+|.+.+++. ..+.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 358999999998886654 5566776 555541 257999999999999999999974 355555
Q ss_pred CCC
Q psy7847 94 DLG 96 (170)
Q Consensus 94 nlp 96 (170)
-.|
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 443
No 161
>KOG3152|consensus
Probab=97.28 E-value=0.00018 Score=53.41 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=58.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHHHHhcCCCcc
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--------NKTKG----FGFVSFKDPQDFIRANKEMNEFPHL 155 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~l~~~~~~ 155 (170)
-.+|++++|+.++..-|+++++.||.|-.+.+.....+ +.+.+ -|-|+|.+...|..+...||+ .
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn---~ 151 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN---T 151 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC---C
Confidence 48999999999999999999999999999988655433 11111 166899999999999999999 8
Q ss_pred ccCCee
Q psy7847 156 FVGDLK 161 (170)
Q Consensus 156 ~~~~~~ 161 (170)
.+||++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 888865
No 162
>KOG4849|consensus
Probab=97.28 E-value=0.00022 Score=55.29 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
.+.++||+||-+++|++||.+.....| .+..+++..++.+|.++|||+|...+..+..+.++.|-. +.+.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~---k~iHG 151 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT---KTIHG 151 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc---ceecC
Confidence 356999999999999999999997766 356677777888999999999999999988888887765 65555
No 163
>KOG1995|consensus
Probab=97.26 E-value=0.001 Score=51.70 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCee--------EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~--------~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
......-++||-+||..+++.+|.++|.++|.|. .|.+.+++.|+..++-|.|.|.+...|+.|+.+..+.
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 3355566899999999999999999999999653 4678888889999999999999999999999988763
No 164
>KOG4210|consensus
Probab=97.21 E-value=0.00035 Score=53.71 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=56.7
Q ss_pred CcEEE-EcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 22 DFRLF-CGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 22 ~~~v~-v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
..+++ +++|+.++++++|+..|..+|.+..++++.+..++.++++||+.|.+......++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 44555 999999999999999999999999999999999999999999999999998888864
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.15 E-value=0.0013 Score=37.51 Aligned_cols=52 Identities=13% Similarity=0.309 Sum_probs=40.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 146 (170)
+.+-|.+.+++..+. +...|..||.|..+.+... ....++.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 356778888776655 5557888999999887521 337999999999999985
No 166
>KOG1855|consensus
Probab=97.10 E-value=0.001 Score=52.91 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=59.4
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEec---CCC--C--------CcCCEEEEEeCCHHHHHHH
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD---KRT--N--------KTKGFGFVSFKDPQDFIRA 80 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~---~~~--~--------~~~~~afv~f~~~~~a~~~ 80 (170)
+...++.++++|.+-|||.+-..+-|.++|+.+|.|..|+|..- ..+ + ..+..|+|+|...+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 34445568999999999999999999999999999999998654 111 1 1357899999999999999
Q ss_pred HHHcCC
Q psy7847 81 NKEMND 86 (170)
Q Consensus 81 ~~~~~~ 86 (170)
.+.++.
T Consensus 303 ~e~~~~ 308 (484)
T KOG1855|consen 303 RELLNP 308 (484)
T ss_pred HHhhch
Confidence 988754
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.91 E-value=0.0045 Score=40.05 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=47.8
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEE-EeecC------CCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAK-VVRDK------RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
.-|.|-+.|+. ....+-+.|++||.|.... +.++. .......+..|+|.++.+|.+|++ -|| ..++|.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG---~i~~g~ 81 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG---TIFSGS 81 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT---EEETTC
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC---eEEcCc
Confidence 45777788887 5566888999999987764 11110 011224478899999999999999 688 888875
Q ss_pred eE-EEEee
Q psy7847 161 KT-RSSIT 167 (170)
Q Consensus 161 ~i-~v~~~ 167 (170)
.| -|.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 44 35443
No 168
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.90 E-value=0.0015 Score=46.82 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhc-CCCeeEEEEEe---cCC-C-CCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVR---DKR-T-NKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~-~g~v~~i~~~~---~~~-~-~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+|.||+||+++|+++..+.++. ++.-..+.... ... . ....+-|||.|.+.+++......+++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 44568999999999999999997776 66552222222 111 1 22346799999999999999998887
No 169
>KOG1996|consensus
Probab=96.89 E-value=0.0039 Score=47.45 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHhccCCCeeEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 101 DELLIRTFSKYPSFLKAKVVRDKRTNK-TKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 101 ~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++++.+-+.+||.+..|.+...+.... ..-..||+|...++|.+|+-.||| .++||+.++..+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG---RyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG---RYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC---ceecceeeeheec
Confidence 456778899999999887765543221 223489999999999999999999 9999999987653
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.87 E-value=0.011 Score=34.76 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcC---CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKY---PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~---g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
..+|+|+|+ -+++-++|+.+|..| .....|.++.|. .|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 357999999 558888999999988 135578888874 5999999999999998653
No 171
>KOG2202|consensus
Probab=96.82 E-value=0.00061 Score=50.69 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=50.1
Q ss_pred HHHHHHhc-cCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 102 ELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 102 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+++...++ +||.|+.+.+..+- ...-.|=++|.|..+++|++|++.||+ ..++|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnn---Rw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNN---RWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcC---ccccCCcceeeecC
Confidence 44444454 89999998776553 233467799999999999999999999 99999999887654
No 172
>KOG4676|consensus
Probab=96.67 E-value=0.0025 Score=50.21 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=60.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..|.|.||.++++.++++.+|+..|.|..+.++.... .......|||.|.+...+..|.-.-|- .+++-..|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtnt---vfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNT---VFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccc---eeeeeeEEEE
Confidence 3688999999999999999999999999998765321 222345799999999998888776565 6666666666
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
-|..
T Consensus 85 p~~~ 88 (479)
T KOG4676|consen 85 PYGD 88 (479)
T ss_pred ecCC
Confidence 5543
No 173
>KOG2416|consensus
Probab=96.47 E-value=0.0026 Score=52.67 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=62.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...|+|.||-..+|.-+|+.+++.-|. |+.. ++ |+ -+..|||.|.+.++|.....+|||-.|-.-+.+.|.+.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH-HH-HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 359999999999999999999986554 4433 32 22 24579999999999999999999987888888999988
Q ss_pred eec
Q psy7847 166 ITL 168 (170)
Q Consensus 166 ~~~ 168 (170)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 864
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.37 E-value=0.02 Score=39.44 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=44.0
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 102 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.+|-+.|..||.+.-+++.-+ --.|+|.+.+.|.+|++ ++| ..++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg---~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDG---IQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCC---SEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCC---cEECCEEEEEEeCCc
Confidence 367778889999887777543 35799999999999999 899 999999999987654
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.07 E-value=0.016 Score=45.05 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=48.3
Q ss_pred cEEEEcCCCCCccHHHH------HHHhhcCCCeeEEEEEecCCC-CCcCC--EEEEEeCCHHHHHHHHHHcCCC
Q psy7847 23 FRLFCGDLGNDVTDELL------IRTFSKYPSFLKAKVVRDKRT-NKTKG--FGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l------~~~f~~~g~v~~i~~~~~~~~-~~~~~--~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+||-+||+.+..|++ .++|++||.|..|.+-+...+ ....+ -.||+|.+.++|.+++.+.++.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 35899999998877763 478999999988877443212 12222 3499999999999999887763
No 176
>KOG0115|consensus
Probab=96.03 E-value=0.009 Score=44.63 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=55.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
..|+|.||+..++-+.+.+-|+.||.+....+..|. .+.+.+-++|.|...-.+.+|+..++.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 479999999999999999999999999987777665 577778899999999999999987743
No 177
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.02 E-value=0.013 Score=41.99 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=43.2
Q ss_pred CceEEecCCCCCCCHHHHHHHhcc-CCCe---eEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSF---LKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
...|.|++||+.+|++++.+.++. ++.- .+.....+... ......|+|.|.+.+++..-...++|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 358999999999999999998877 6654 23331122211 11234599999999999999999999
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.98 E-value=0.14 Score=33.76 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+.+...|..++.++|..+...+- .+..++++++. ..++-.+.+.|.+.++|..+....||+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC
Confidence 33455545555566667765555543 67888898874 235668999999999999999999974
No 179
>KOG3152|consensus
Probab=95.96 E-value=0.005 Score=45.96 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC--------CCcC----CEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--------NKTK----GFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~--------~~~~----~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...||++++|+.+...-|++++..||.|=.|.+-....+ |.+. .-++|+|.+...|..+...||+.
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 356999999999999999999999999988888655444 2221 34689999999999999999863
No 180
>KOG2068|consensus
Probab=95.88 E-value=0.0052 Score=47.54 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=57.3
Q ss_pred eEEecCCCCCCCHHHHHH---HhccCCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 89 RLFCGDLGNDVTDELLIR---TFSKYPSFLKAKVVRDKR----TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~---~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
-+|+.+|+.....+.+-+ -|++||.|..+.+.++.. .+... .++|+|...++|.+|+...+| ....++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g---~~~dg~~ 154 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDG---FVDDGRA 154 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhh---HHhhhhh
Confidence 366778887665554433 678899999998877651 12222 389999999999999999999 9999988
Q ss_pred EEEEeec
Q psy7847 162 TRSSITL 168 (170)
Q Consensus 162 i~v~~~~ 168 (170)
++.++.+
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 8877654
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.76 E-value=0.079 Score=32.97 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=39.2
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
..++. .|..|-..||.++|+.||.|. |.++-| ..|||...+++.+..|+..++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44444 899999999999999999864 444443 2699999999999998887764
No 182
>KOG2193|consensus
Probab=95.71 E-value=0.015 Score=46.60 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=55.1
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.+|++||.+.++..+|+.+|.....--.-.++. ..||+||.+.+..-|.+|++.++|. ..+.|+++.+..+-
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk--~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGK--VELQGKRQEVEHSV 74 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchh--hhhcCceeeccchh
Confidence 589999999999999999997541111111211 2579999999999999999999994 67788888776653
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.62 E-value=0.064 Score=34.71 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEE-EEecC------CCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAK-VVRDK------RTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~-~~~~~------~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
.++.|.|=+.|+.. ...|.+.|+.||+|.+.. +.++. .......+..|.|.++.+|.+|+..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh
Confidence 45668888999884 457778899999987664 11110 0112345899999999999999954
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.39 E-value=0.093 Score=36.02 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=49.0
Q ss_pred eEEecCCCCCC----CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 89 RLFCGDLGNDV----TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 89 ~l~v~nlp~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
++.|+=|..++ +-..+...++.||+|..+...- +..|.|.|.+..+|.+|+.+++. ..-|.-+..
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s----~~pgtm~qC 156 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS----RAPGTMFQC 156 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC----CCCCceEEe
Confidence 77776444433 3344445567899999986642 33699999999999999999986 334556777
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
+|..+
T Consensus 157 sWqqr 161 (166)
T PF15023_consen 157 SWQQR 161 (166)
T ss_pred ecccc
Confidence 77653
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.31 E-value=0.12 Score=30.28 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=41.3
Q ss_pred eEEecCCCCCCCHHHHHHHhccC---CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKY---PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 149 (170)
.|+++++.. ++-+++...|..| .....+.++-|. .|=|.|.+.+.|.+|+.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 688888855 7788899999887 234567776664 4779999999999999764
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.23 E-value=0.063 Score=38.71 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=44.5
Q ss_pred CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc--CCCccccCCeeEEEEeecc
Q psy7847 100 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN--EFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 100 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~~~~i~v~~~~~ 169 (170)
....|+++|..++.+.....++. -+...|.|.+.++|..|...++ + ..++|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~---~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDG---TSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--T---SEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccc---cccCCCceEEEEccc
Confidence 45789999999998877766654 3468899999999999999999 8 899999999988753
No 187
>KOG0115|consensus
Probab=94.87 E-value=0.04 Score=41.30 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=55.0
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..|+|.||+.-++-+.+.+.|..||+++...+.-| ..++..+-+.|.|...-.+.+|...+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 57999999999999999999999999988777776 367888889999999999999998764
No 188
>KOG0804|consensus
Probab=94.72 E-value=0.16 Score=41.16 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+..|.|-.+|.-++..||..|+..+- .|.+|+++++. -..+=.+.|.|.+.++|..+.+++||+
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk 138 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGK 138 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCC
Confidence 3378899999999999999999998765 68999999963 234457899999999999999999985
No 189
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.71 E-value=0.22 Score=29.62 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=41.0
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 98 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 98 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
.++-++++..+..|+ +..+..|+ .|| ||.|.+.++|++|....+| ..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~---~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDG---TLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCC---CEEEEEEEE
Confidence 577889999998873 34444454 454 7999999999999999999 666665543
No 190
>KOG0112|consensus
Probab=94.20 E-value=0.061 Score=46.83 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....+++++|++++....+...|..||.+..|.+.... .|||+.+++...++.+++.+-+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhc
Confidence 345679999999999999999999999999998775432 5999999999999999987764
No 191
>KOG2416|consensus
Probab=94.18 E-value=0.051 Score=45.31 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=50.5
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhc-CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~-~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++.|||.||-.-.|.-+|+.++++ .|.|++. +|. +-+..|||.|.+.++|....+.||+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-----kIKShCyV~yss~eEA~atr~Alhn 503 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-----KIKSHCYVSYSSVEEAAATREALHN 503 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-----HhhcceeEecccHHHHHHHHHHHhc
Confidence 3455788999999999999999999985 5556555 332 2356799999999999999998886
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.00 E-value=0.75 Score=30.27 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=45.3
Q ss_pred eEEecCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCC
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 153 (170)
.+.+...|..++.++|..+.+.+ ..|..+++++|. ..++-.+++.|.+.++|..-...+||.+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 44444555666667776666555 356778888874 2345569999999999999999999933
No 193
>KOG2135|consensus
Probab=93.94 E-value=0.033 Score=45.16 Aligned_cols=70 Identities=13% Similarity=-0.029 Sum_probs=54.0
Q ss_pred EEecCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 90 LFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 90 l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
|-+.-.|+. -+..+|..-|.+||.|..|++-.. .-.|.|+|.+..+|-+|-. .++ ..++++.|||.|-.
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~---avlnnr~iKl~whn 444 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHG---AVLNNRFIKLFWHN 444 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-ccc---ceecCceeEEEEec
Confidence 333444443 346889999999999999988433 2258999999999977765 688 99999999999965
Q ss_pred c
Q psy7847 169 K 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 194
>KOG4574|consensus
Probab=93.02 E-value=0.07 Score=46.28 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=61.0
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+..+.|.+-..+-..|.-+|+.||.+..+..+++- ..|.|+|.+.+.|..|+.+++|.+..+.|. +.+|++|.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~-Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGA-PSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCC-ceeEEecc
Confidence 55566777788889999999999999999887773 378999999999999999999976666655 68888774
No 195
>KOG2591|consensus
Probab=92.85 E-value=0.25 Score=41.09 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=53.9
Q ss_pred ceEEecCCCCCCCHHHHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
+.+.++.+|..+..|+++.+|.. +..+..|.+..+. + =||+|.+..||+.|.+.|.. ..+.+.|++|...
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----n---WyITfesd~DAQqAykylre-evk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----N---WYITFESDTDAQQAYKYLRE-EVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----c---eEEEeecchhHHHHHHHHHH-HHHhhcCcchhhh
Confidence 45667899999999999999954 6678888886653 1 37999999999999887765 3455666666544
Q ss_pred e
Q psy7847 166 I 166 (170)
Q Consensus 166 ~ 166 (170)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.72 E-value=0.29 Score=33.68 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCCccH-HHH---HHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTD-ELL---IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~-~~l---~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+-.+|.|+=|..++.. +|+ ..-++.||+|.++...- +..|.|+|++..+|-.|+...+.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC
Confidence 3456778766665443 344 44567799999986632 34699999999999999987763
No 197
>KOG1996|consensus
Probab=91.52 E-value=0.69 Score=35.62 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCeeEEEEEecCCCCCc-CCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 37 ELLIRTFSKYPSFLKAKVVRDKRTNKT-KGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 37 ~~l~~~f~~~g~v~~i~~~~~~~~~~~-~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+++++-+++||.|..|.|.....-... .--.||+|...+++.+|+-.+|+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC
Confidence 577888999999999988776432222 23479999999999999999887
No 198
>KOG2202|consensus
Probab=91.00 E-value=0.092 Score=39.36 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=40.0
Q ss_pred HHHHHHhh-cCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 37 ELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 37 ~~l~~~f~-~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++...+. +||.|+++.+..+. ...-.|=+||.|..+++|++|+..|++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnR 133 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNR 133 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCc
Confidence 45555555 89999999876653 3456788999999999999999999873
No 199
>KOG2591|consensus
Probab=90.68 E-value=1.4 Score=36.94 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhc--CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~--~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
+.+.|.|+.+|..+-.|+++-+|+. +.++.+|.+-.+. -=||+|++..+|..|.+-+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHH
Confidence 3456899999999999999999975 7888899886553 2599999999999998644
No 200
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.19 E-value=0.39 Score=30.27 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=33.7
Q ss_pred EEEEeCCHHHHHHHHHHcCC-------------------------------CceEEecCCCCCCCHHHHHHHh
Q psy7847 67 GFVSFKDPQDFIRANKEMND-------------------------------DFRLFCGDLGNDVTDELLIRTF 108 (170)
Q Consensus 67 afv~f~~~~~a~~~~~~~~~-------------------------------~~~l~v~nlp~~~~~~~l~~~f 108 (170)
|.|+|.++.-|...+..-.. .+++.|.|+|...++++|+...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 67899999999998863221 3589999999999999998554
No 201
>KOG0804|consensus
Probab=89.45 E-value=1.2 Score=36.17 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=56.2
Q ss_pred CceEEecCCCCCCCHHHHHHHhccC-CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
...|+|-.+|..++-.||-.++..+ ..|..+++++|. -..+-.+++.|.+.++|..--+.+|| +.++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNG---k~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNG---KQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCC---CcCCC
Confidence 6789999999999999999999765 568899999964 22344589999999999999999999 55544
No 202
>KOG2068|consensus
Probab=88.56 E-value=0.43 Score=37.24 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=47.5
Q ss_pred CcEEEEcCCCCCccHHHH---HHHhhcCCCeeEEEEEecCC--CC-CcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELL---IRTFSKYPSFLKAKVVRDKR--TN-KTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l---~~~f~~~g~v~~i~~~~~~~--~~-~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+||-+|+.....+++ .+.|.+||.+..|.+.++.. .+ .....+||+|...++|..++...++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g 147 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG 147 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh
Confidence 356888899887665555 36799999999998887651 11 1223499999999999999876554
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.75 E-value=2.9 Score=25.17 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhccCCCe-----eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 97 NDVTDELLIRTFSKYPSF-----LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 97 ~~~~~~~l~~~f~~~g~i-----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
..++..+|-.++...+.+ -.|.+.. .|+||+-. .+.+..+++.|++ ..++|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~-~~~a~~v~~~l~~---~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVP-EEVAEKVLEALNG---KKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE--TT-HHHHHHHHTT-----SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEEC-HHHHHHHHHHhcC---CCCCCeeEEEEEC
Confidence 357777888888665443 4555543 27888876 4578899999999 9999999999865
No 204
>KOG4483|consensus
Probab=86.44 E-value=4.9 Score=32.47 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
.-.+.|-|.++|.....+||...|+.|+ ..-+|.++.+. .||..|.+...|..++..-|. -|.++.|...
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~--~lKiRpLaqa 459 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHD--WLKIRPLAQA 459 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCc--eEEeeehhhc
Confidence 3467899999999888889999999887 45677777775 699999999999999987543 5666777666
Q ss_pred CCHHHHHHH
Q psy7847 99 VTDELLIRT 107 (170)
Q Consensus 99 ~~~~~l~~~ 107 (170)
+-...+...
T Consensus 460 tk~sklkAk 468 (528)
T KOG4483|consen 460 TKVSKLKAK 468 (528)
T ss_pred hhHHHHHhh
Confidence 655555543
No 205
>KOG4285|consensus
Probab=84.92 E-value=1.9 Score=33.40 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=45.0
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
=|.|-++|+.-. ..+-.+|+++|.|....... ++ .+-+|.|.+..+|++||. .|| .++++-
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALs-kng---~ii~g~ 259 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALS-KNG---TIIDGD 259 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhh-hcC---eeeccc
Confidence 455557777543 45778899999998876541 22 367899999999999999 577 777764
No 206
>KOG2253|consensus
Probab=82.29 E-value=1.7 Score=37.06 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
.+..+|||+|+...+..+-++.+...+|-|-++.... |+|..|..+.....++..+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc
Confidence 3467899999999999999999999999887665432 78999999998888876443
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.43 E-value=11 Score=22.41 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=35.5
Q ss_pred CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 33 DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 33 ~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.++-++++.-+..|+ .. +++.++ +| -||.|.+..+|+++....++.
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEecC-CE-----EEEEECChHHHHHHHHhcCCC
Confidence 577889999999988 33 344443 33 699999999999999888764
No 208
>KOG4213|consensus
Probab=76.29 E-value=3.2 Score=29.77 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCC--CcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN--KTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~--~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
..++++.. |.+...++|.++-+ |.+..+.+.+.. .+ ..+|..||+|...+.+..++...
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 34567666 44444455555544 788888776653 44 67899999999999998877543
No 209
>KOG4285|consensus
Probab=72.66 E-value=25 Score=27.49 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
+..|.|=++|+.-. ..|...|.+||.|.+.... ..--+-+|.|.+.-+|++|+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh
Confidence 66788889987654 3677889999998766443 2234889999999999999943
No 210
>KOG2318|consensus
Probab=71.51 E-value=21 Score=30.41 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCC-ccHHHHHHHhhcC----CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-ceEEec
Q psy7847 20 ENDFRLFCGDLGND-VTDELLIRTFSKY----PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-FRLFCG 93 (170)
Q Consensus 20 ~~~~~v~v~nLp~~-~t~~~l~~~f~~~----g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-~~l~v~ 93 (170)
...++|-|-|+.++ +...+|.-+|+.| |.|.+|.|..... | ...- .-++.+|. .-|+-.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-----------keRM---~eEeV~GP~~el~~~ 236 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-----------KERM---KEEEVHGPPKELFKP 236 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-----------HHHh---hhhcccCChhhhccc
Confidence 34677888899986 7888888887654 4888998876532 1 1111 11223332 222221
Q ss_pred CCCCCCC--HHHH-----HHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 94 DLGNDVT--DELL-----IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 94 nlp~~~~--~~~l-----~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
+-+..-. ..+. ...+.+|+ +... ..-||.|+|.+...|...-..|+| ..+.....++.+
T Consensus 237 ~e~~~~s~sD~ee~~~~~~~kLR~Yq-~~rL----------kYYyAVvecDsi~tA~~vYe~CDG---~EfEsS~~~~DL 302 (650)
T KOG2318|consen 237 VEEYKESESDDEEEEDVDREKLRQYQ-LNRL----------KYYYAVVECDSIETAKAVYEECDG---IEFESSANKLDL 302 (650)
T ss_pred cccCcccccchhhhhhHHHHHHHHHH-hhhh----------eeEEEEEEecCchHHHHHHHhcCc---ceeccccceeee
Confidence 1111111 1111 22222221 1111 123799999999999999999999 777776655543
No 211
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=71.26 E-value=12 Score=25.87 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---CceEEecCCCCCCC
Q psy7847 37 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND---DFRLFCGDLGNDVT 100 (170)
Q Consensus 37 ~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~---~~~l~v~nlp~~~~ 100 (170)
.+|.+.|..||.+.=+++..+. -+|+|.+-++|.+|+..... ..+|.|+--.++|.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 3677788899988777776543 69999999999999954332 35666665555544
No 212
>KOG2253|consensus
Probab=70.51 E-value=3 Score=35.58 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=59.3
Q ss_pred HcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 83 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
-++...++||+|+...+..+-+..+....|.|..+.... |||..|.......+|+..++. ..++|..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~---~~~~~~kl 103 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTE---LNIDDQKL 103 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcc---cCCCcchh
Confidence 345567999999999999999999999998877664322 799999999999999999998 88888776
Q ss_pred EEEe
Q psy7847 163 RSSI 166 (170)
Q Consensus 163 ~v~~ 166 (170)
-+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 5543
No 213
>KOG4410|consensus
Probab=64.13 E-value=28 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=34.5
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCC-eeEEEEEecCCCCCcCCEEEEEeCCHHH
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQD 76 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~-v~~i~~~~~~~~~~~~~~afv~f~~~~~ 76 (170)
.-++++|||.++-..||+..+...|- -.++.+ . | ..+-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---g-~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---G-HFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee--e---c-CCcceeEecCCccC
Confidence 34999999999999999999987663 233333 1 2 23558999987643
No 214
>KOG4483|consensus
Probab=63.44 E-value=15 Score=29.82 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=46.7
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
+.|-|.++|...-.+||-+.|+.|+. -.+|.++-|. .||..|.+...|..|+..-|.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~ 449 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHD 449 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCc
Confidence 47888999999999999999999864 3567776654 799999999999999986443
No 215
>KOG4574|consensus
Probab=61.82 E-value=3 Score=36.77 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHH
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDEL 103 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~ 103 (170)
+..+-|.+-+.+..-|..+|.+||.+.+....++- -.|.|.|.+.+.|..|+..++|. -+.+.+.|-.+....
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gk-evs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGK-EVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCC-cccccCCceeEEecc
Confidence 34444555577888899999999999998887663 36899999999999999999874 233334444333333
Q ss_pred HHHHh
Q psy7847 104 LIRTF 108 (170)
Q Consensus 104 l~~~f 108 (170)
...+|
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 33333
No 216
>KOG4410|consensus
Probab=61.73 E-value=20 Score=27.82 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=35.0
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEecCHH
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQ 140 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~ 140 (170)
-++++|||.++.-.||++.+..-+- ...+.+. .+.|-||+.|.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 8999999999999999999976653 3445442 24678999997654
No 217
>KOG4019|consensus
Probab=60.74 E-value=8.4 Score=27.70 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=39.9
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe-eEEEEeecc
Q psy7847 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL-KTRSSITLK 169 (170)
Q Consensus 102 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~-~i~v~~~~~ 169 (170)
.....+|.+|......++++. .+...|.|.+++.|..|.-.+++ ..+.|. .++.-+++.
T Consensus 30 ~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~---~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHS---TSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhh---cccCCCceEEEEEccC
Confidence 344455555544444344332 34567899999999999999999 777766 777777654
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.33 E-value=28 Score=27.05 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCC-------CCCcCCEEEEEeCCHHHHHHHH
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-------TNKTKGFGFVSFKDPQDFIRAN 81 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~-------~~~~~~~afv~f~~~~~a~~~~ 81 (170)
.-..|.|...|+..+++--....-|-+||+|++|.++.+.. .........+.|-+.+....+.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 33456688999999998777778888999999999998751 1233467888999888865554
No 219
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=59.26 E-value=11 Score=25.02 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred CCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------ceEEecC------
Q psy7847 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---------FRLFCGD------ 94 (170)
Q Consensus 30 Lp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---------~~l~v~n------ 94 (170)
||+-++ .|.++|+.-|+|.++.......+...--+. .-.++..+++ ..+.+.+
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqypdndal~~~----------~G~lE~vDg~i~IGs~q~~~sV~i~gTPsgnn 78 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYPDNDALLYV----------HGTLEQVDGNIRIGSGQTPASVRIQGTPSGNN 78 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccCCchhhhee----------eeehhhccCcEEEccCCCcccEEEecCCCCCc
Confidence 666665 588999999999988776553222111000 0112222221 2333322
Q ss_pred ---CCCCCCHHHHHHHhcc---CCCeeEEEEeecCCCCCcccEEEEEecCH
Q psy7847 95 ---LGNDVTDELLIRTFSK---YPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139 (170)
Q Consensus 95 ---lp~~~~~~~l~~~f~~---~g~i~~~~~~~~~~~~~~~g~afv~f~~~ 139 (170)
-|+.++..+++++|.. |-.|.+-++.+|--...+-..||..|...
T Consensus 79 v~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 79 VIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred eecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 3567899999999964 44444444555432222334688888654
No 220
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=59.09 E-value=49 Score=23.31 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=31.9
Q ss_pred CcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 62 KTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 62 ~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
..+...|+.|+++.++...++...+-.++-|+|+.+.
T Consensus 74 ~~~~~v~ll~~~p~d~~~lve~gv~I~~iNVG~m~~~ 110 (159)
T COG3444 74 YDGQKVFLLFENPQDVLRLVEGGVPIKTINVGGMAFR 110 (159)
T ss_pred CCCeEEEEEECCHHHHHHHHhcCCCCcEEEEcCccCC
Confidence 3456799999999999999999998889999988764
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=57.98 E-value=30 Score=24.99 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=34.5
Q ss_pred cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 35 TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 35 t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..+.|+++|..++.+..+...+.- +-..|.|.+.++|.++...++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhc
Confidence 347899999999988888776542 458999999999999999988
No 222
>KOG2295|consensus
Probab=57.84 E-value=1.4 Score=36.83 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=52.0
Q ss_pred HHcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 82 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
..+|..+.++++|+++..+-.+|..+|..+..+....+..+.....-...+.|+|+-.-....|..+||+ ..+..
T Consensus 226 ~n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~---irl~s 300 (648)
T KOG2295|consen 226 DNTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG---IRLRS 300 (648)
T ss_pred hhhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh---ccccc
Confidence 4457778999999999999999999999887666554433221222233567888866666667777777 54444
No 223
>KOG1295|consensus
Probab=56.88 E-value=27 Score=28.12 Aligned_cols=74 Identities=16% Similarity=0.375 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCC-eeEEEEEecCCC--CCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLG 96 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~-v~~i~~~~~~~~--~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp 96 (170)
.-..|.|.+||+..+++++.+-...+.. +....+.....+ ..--+.|||.|..++++.......++ .+||.+=.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g--~ifld~Kg 82 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG--YIFLDNKG 82 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc--eEEecCCC
Confidence 3456899999999999999888887653 333333322211 12256899999999998888877775 55554433
No 224
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=54.90 E-value=54 Score=28.12 Aligned_cols=57 Identities=7% Similarity=0.238 Sum_probs=43.7
Q ss_pred CEEEEEeCCHHHHHHHHHHcCCC------------------------------------------ceEEecCCCCCCCHH
Q psy7847 65 GFGFVSFKDPQDFIRANKEMNDD------------------------------------------FRLFCGDLGNDVTDE 102 (170)
Q Consensus 65 ~~afv~f~~~~~a~~~~~~~~~~------------------------------------------~~l~v~nlp~~~~~~ 102 (170)
--||+++.++..-+-...++|.+ ..+|+.+|+.++.++
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~d 316 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPED 316 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHH
Confidence 46899999888766655555531 388888999888888
Q ss_pred HHHHHhccCCCeeEEEEee
Q psy7847 103 LLIRTFSKYPSFLKAKVVR 121 (170)
Q Consensus 103 ~l~~~f~~~g~i~~~~~~~ 121 (170)
--.++......++.+.+++
T Consensus 317 VQ~~~irsipGlEna~i~r 335 (621)
T COG0445 317 VQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHhCcccccceeec
Confidence 7777888888888888876
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=53.41 E-value=50 Score=20.18 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=38.0
Q ss_pred CCCCCccHHHHHHHhhc-CC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 29 DLGNDVTDELLIRTFSK-YP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 29 nLp~~~t~~~l~~~f~~-~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
.++.+++..+|++.++. || .+.++..+.-+ ....=|||.+...++|...-..
T Consensus 20 ~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 20 IVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 45789999999999975 77 67777776653 2234589999888887766543
No 226
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=51.84 E-value=30 Score=20.54 Aligned_cols=62 Identities=10% Similarity=0.043 Sum_probs=36.9
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 102 ELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 102 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
++|.+-+...| .+..+.-+..+.++.+...-||+.....+... .++ +..+++..|+|....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~---Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYK---IKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eee---hHhhCCeEEEEecCCC
Confidence 34555565554 45555544444456666677777765544222 233 3888999999887654
No 227
>KOG2295|consensus
Probab=51.78 E-value=3.1 Score=34.92 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=47.1
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...++++|++++++.++|..+++.+.-...+-+...........+.+|.|+-.-....++..+++
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 34599999999999999999999887665555543333334556678888876666666666664
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.82 E-value=59 Score=20.24 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCCCccHHHHHHHhhc-CC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 30 LGNDVTDELLIRTFSK-YP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 30 Lp~~~t~~~l~~~f~~-~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
++.+++..+|++.++. || .+.++....-+ ....=|||.+....+|......
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 4789999999999975 77 67788776653 2233589999998888877644
No 229
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.59 E-value=14 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=10.5
Q ss_pred CCccHHHHHHHhhcCC
Q psy7847 32 NDVTDELLIRTFSKYP 47 (170)
Q Consensus 32 ~~~t~~~l~~~f~~~g 47 (170)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998765
No 230
>KOG4365|consensus
Probab=48.21 E-value=3.2 Score=33.87 Aligned_cols=76 Identities=5% Similarity=-0.150 Sum_probs=48.6
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
...++..+|-..++.++..+|+.||-|.-+..-+--..+...-.+|++-. ..++..+++.+.- ..+.+..++++++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~---q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKR---QTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHH---hhhhhhhhhhhcC
Confidence 45567789999999999999999998876654332223444546776654 3445555554443 5555555555554
No 231
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.65 E-value=10 Score=30.70 Aligned_cols=60 Identities=22% Similarity=0.213 Sum_probs=49.2
Q ss_pred cEEEEcCCCCCccH--------HHHHHHhhc--CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHH
Q psy7847 23 FRLFCGDLGNDVTD--------ELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82 (170)
Q Consensus 23 ~~v~v~nLp~~~t~--------~~l~~~f~~--~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~ 82 (170)
+.+|+.+....-+. +++...|.. .++...++..++.....++|..|++|+..+.+.++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45777777665444 488889987 6788999999987778889999999999999999984
No 232
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.16 E-value=9.9 Score=30.74 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=47.3
Q ss_pred ceEEecCCCCCCC--------HHHHHHHhcc--CCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy7847 88 FRLFCGDLGNDVT--------DELLIRTFSK--YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147 (170)
Q Consensus 88 ~~l~v~nlp~~~~--------~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 147 (170)
+.+|+.+.+.... .+++...|.. ++.+..+...++..+...+|..|++|.....+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4667666665444 4599999988 6788888888887677789999999999999888864
No 233
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.57 E-value=27 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=23.2
Q ss_pred CcCCEEEEEeCCHHHHHHHHHHcCCCceE
Q psy7847 62 KTKGFGFVSFKDPQDFIRANKEMNDDFRL 90 (170)
Q Consensus 62 ~~~~~afv~f~~~~~a~~~~~~~~~~~~l 90 (170)
.-+||-||+-.++.++..++..+.+-+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 36899999999999999999887764433
No 234
>PF14893 PNMA: PNMA
Probab=45.04 E-value=20 Score=28.38 Aligned_cols=81 Identities=11% Similarity=0.170 Sum_probs=49.0
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhc----CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---ceEEecC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSK----YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD---FRLFCGD 94 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~----~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~---~~l~v~n 94 (170)
.+.+-|.++|.++++++|.+.++. .|...-.--+..+ ......|+|+|...-+....-.+++++ ++|.+
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~--~~~~~aalve~~e~~n~~~iP~~i~g~gg~W~Vv~-- 93 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRR--EENAKAALVEFAEDVNYSLIPREIPGKGGPWRVVF-- 93 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhh--hcccceeeeecccccchhhCchhcCCCCCceEEEe--
Confidence 456889999999999999988753 4533211111111 122456899998776666666666664 44443
Q ss_pred CCCCCCHHHHHH
Q psy7847 95 LGNDVTDELLIR 106 (170)
Q Consensus 95 lp~~~~~~~l~~ 106 (170)
.|+.-+.+-+.+
T Consensus 94 ~p~~~D~e~l~~ 105 (331)
T PF14893_consen 94 KPPAPDAEFLRR 105 (331)
T ss_pred cCCCCCHHHHHH
Confidence 355555544444
No 235
>KOG1295|consensus
Probab=44.62 E-value=30 Score=27.83 Aligned_cols=65 Identities=14% Similarity=0.321 Sum_probs=45.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTN--KTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
...+.|.+||+..+++++.+...++.. +.+..+.....+- .-.+.++|.|...++...-...++|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g 74 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDG 74 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCc
Confidence 346788999999999999998887643 3444444322111 1255689999999997777777777
No 236
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=44.38 E-value=55 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 64 ~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
..-.|+.|++++++.++++....-..|-|+|++..
T Consensus 75 ~~~v~ii~k~~~d~~~l~~~g~~i~~iNvG~~~~~ 109 (151)
T PF03830_consen 75 KKRVLIIVKSPEDALRLVEAGVKIKEINVGNMSKK 109 (151)
T ss_dssp TEEEEEEESSHHHHHHHHHTT---SEEEEEEB---
T ss_pred CceEEEEECCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 44578899999999999887776667888877654
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.25 E-value=32 Score=20.13 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.6
Q ss_pred HHHHHHhhcCCCeeEEEE
Q psy7847 37 ELLIRTFSKYPSFLKAKV 54 (170)
Q Consensus 37 ~~l~~~f~~~g~v~~i~~ 54 (170)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999998865544
No 238
>TIGR00854 pts-sorbose PTS system, mannose/fructose/sorbose family, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters.
Probab=43.01 E-value=1.1e+02 Score=21.23 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=23.9
Q ss_pred CEEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 65 ~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
.-.||.|++++++.++++..-.-..|-|+|+..
T Consensus 76 ~~v~vl~k~~~da~~l~~~g~~i~~iniG~~~~ 108 (151)
T TIGR00854 76 QTIFLLFRNPQDVLTLVEGGVPIKTVNVGGMHF 108 (151)
T ss_pred ceEEEEECCHHHHHHHHHcCCCCCEEEECCccc
Confidence 457888888888888887544455677777754
No 239
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.12 E-value=59 Score=25.33 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=52.1
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecC-------CCCCcccEEEEEecCHHHHHHH----HHHhcCCCccc
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK-------RTNKTKGFGFVSFKDPQDFIRA----NKEMNEFPHLF 156 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a----~~~l~~~~~~~ 156 (170)
+.|.+.|+..+++=..+-.-|-.||.|+.|.+..+. ......-...+.|-+.+.+..- ++.|..+ ...
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf-K~~ 94 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF-KTK 94 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH-HHh
Confidence 456778999999988999999999999999887664 1112234678888888765443 2222221 134
Q ss_pred cCCeeEEEEee
Q psy7847 157 VGDLKTRSSIT 167 (170)
Q Consensus 157 ~~~~~i~v~~~ 167 (170)
+....+++++.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 55566666654
No 240
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=41.71 E-value=1.2e+02 Score=21.07 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=24.9
Q ss_pred CCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 64 ~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
..-.||.|++++++.++++..-.-..|-|+|+..
T Consensus 74 ~~~v~il~k~~~~~~~l~~~g~~i~~vnvG~~~~ 107 (151)
T cd00001 74 KQRVFLLFKNPQDVLRLVEGGVPIKTINVGNMAF 107 (151)
T ss_pred CceEEEEECCHHHHHHHHHcCCCCCEEEECCCcC
Confidence 3458889999999888887544456777777754
No 241
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=41.22 E-value=1.2e+02 Score=21.29 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=24.0
Q ss_pred EEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 66 FGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 66 ~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
-.||.|++++++.++++..-.-..|-|||++.
T Consensus 78 ~v~il~k~~~d~~~l~~~g~~i~~iNvG~~~~ 109 (157)
T PRK11425 78 KILLVCKTPADFLTLVKGGVPVNRINVGNMHY 109 (157)
T ss_pred eEEEEECCHHHHHHHHHcCCCCCEEEECCccc
Confidence 47899999999999887444455777777754
No 242
>PRK11901 hypothetical protein; Reviewed
Probab=40.79 E-value=61 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=37.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEE--EecCHHHHHHHHHHhcC
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV--SFKDPQDFIRANKEMNE 151 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv--~f~~~~~a~~a~~~l~~ 151 (170)
..++|-+..+ ..++.|..+...++ +..+.+....-+|..+ |.++ .|.+.++|..|+..|=.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3457777664 34677777776664 3444444333345544 5433 68899999999987643
No 243
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=40.61 E-value=34 Score=25.41 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=53.6
Q ss_pred EcCCCCCccH-HHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHH
Q psy7847 27 CGDLGNDVTD-ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLI 105 (170)
Q Consensus 27 v~nLp~~~t~-~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~ 105 (170)
-.+||..+++ -++.++|+.+| +++-... + - .|....+.-+....+..+..+.+.|+....|++++.
T Consensus 115 ~~dl~Le~~~~~dl~~L~Ka~g----ik~e~~~-~-------~-~~eki~~~lki~~~l~~kki~ifvNl~~YLt~eei~ 181 (216)
T TIGR01866 115 ENELDLKYDEELDILEIIKALG----IKFETQS-D-------T-LLEKCLEILQIFKELTKKKLFIFINSGAFLTKDELA 181 (216)
T ss_pred hcCCCeeecCccCHHHHHHhcC----eeeeecc-C-------c-HHHHHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHH
Confidence 4577777766 78999999888 2221110 1 1 456777888888899999999999999999999999
Q ss_pred HHhcc
Q psy7847 106 RTFSK 110 (170)
Q Consensus 106 ~~f~~ 110 (170)
++...
T Consensus 182 el~~~ 186 (216)
T TIGR01866 182 ELQKF 186 (216)
T ss_pred HHHHH
Confidence 98854
No 244
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=40.11 E-value=40 Score=25.78 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.7
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
....|+|||++++-.-|..++...-.+..+.+|.++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Qk 131 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQK 131 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHH
Confidence 356799999999999999998876656666676664
No 245
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=38.22 E-value=2e+02 Score=22.78 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=54.3
Q ss_pred CCCCCccHHHHHHH----hhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHH-HHHHHHHcCCC------ceEEecCCCC
Q psy7847 29 DLGNDVTDELLIRT----FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD-FIRANKEMNDD------FRLFCGDLGN 97 (170)
Q Consensus 29 nLp~~~t~~~l~~~----f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~-a~~~~~~~~~~------~~l~v~nlp~ 97 (170)
|.|.+-+-+-++.. ++++|.-.++++.+.-.. ++|-+-|.|.-... ....+...... -..+..++|+
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~~~l~~i~l~~~g~i~~irg~~~~~~l~~ 196 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPSKLLPPLLLEERGEIEKIRGISHAANLPP 196 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecccCCCcceeecCCCeEEEEEEEEEccCCH
Confidence 45555556666554 467896666777654333 34444444443321 11122222211 1556679999
Q ss_pred CCCHHHHHHH---hcc-CCCeeEEEEeecCCCCCcccEEEEEec
Q psy7847 98 DVTDELLIRT---FSK-YPSFLKAKVVRDKRTNKTKGFGFVSFK 137 (170)
Q Consensus 98 ~~~~~~l~~~---f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~ 137 (170)
.+.+.++... +.. ++ .++.+..+...+.+.|++.+.+.
T Consensus 197 ~va~r~~~~a~~~L~~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 197 HVAERQAEAAAALLRKALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred HHHHHHHHHHHHHHhhccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 8887666554 443 32 23333333334666777665543
No 246
>PRK09756 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=37.69 E-value=1.4e+02 Score=20.86 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=22.9
Q ss_pred CEEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 65 ~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
.-.||.|++++++.++++..-.-..|-|+|+..
T Consensus 80 ~~vlvl~~~~~da~~l~~~g~~i~~iNiG~m~~ 112 (158)
T PRK09756 80 QKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHF 112 (158)
T ss_pred ceEEEEECCHHHHHHHHHcCCCCCEEEECCCcC
Confidence 347888888888888887443355677776644
No 247
>KOG4008|consensus
Probab=37.22 E-value=32 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK 51 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~ 51 (170)
+......+|+-|+|..++++.|..+.+.+|-+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3345668999999999999999999998884443
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.18 E-value=85 Score=20.78 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=28.9
Q ss_pred eEEecCCCCC---------CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecC-HHHHHHHHH
Q psy7847 89 RLFCGDLGND---------VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIRANK 147 (170)
Q Consensus 89 ~l~v~nlp~~---------~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 147 (170)
++.|.|++.. .+.+.|...|..|..+. +..+.++ ..+.|+++|.|.+ -.....|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4555666543 45578888898887765 4444554 3568899999974 444455544
No 249
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=35.45 E-value=58 Score=20.50 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=32.0
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEe-cCCCCCCCHHHHHHHhc
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFC-GDLGNDVTDELLIRTFS 109 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v-~nlp~~~~~~~l~~~f~ 109 (170)
..||-||.+...+.....+..+.+-..+.- ++-|..+.++++..+..
T Consensus 58 fpGYvFv~~~~~~~~~~~i~~~~~v~~~v~~~~~p~~v~~~e~~~l~~ 105 (106)
T smart00738 58 FPGYIFVEADLEDEVWTAIRGTPGVRGFVGGGGKPTPVPDDEIEKILK 105 (106)
T ss_pred CCCEEEEEEEeCCcHHHHHhcCCCccEECCCCCeeeECCHHHHHHHhh
Confidence 349999999877777777777766433321 34466688888877653
No 250
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=35.20 E-value=94 Score=18.54 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHh-ccCCCe-eEEE-EeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 94 DLGNDVTDELLIRTF-SKYPSF-LKAK-VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 94 nlp~~~~~~~l~~~f-~~~g~i-~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
.++..++-++|.... ..|+.. ..+. ...|. .| -.|...+.++...|++.++. . ++..+++.+.+
T Consensus 17 ~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~-dg-----D~V~i~sd~Dl~~a~~~~~~---~--~~~~lrl~v~~ 83 (84)
T PF00564_consen 17 SLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE-DG-----DLVTISSDEDLQEAIEQAKE---S--GSKTLRLFVQD 83 (84)
T ss_dssp EECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET-TS-----SEEEESSHHHHHHHHHHHHH---C--TTSCEEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC-CC-----CEEEeCCHHHHHHHHHHHHh---c--CCCcEEEEEEe
Confidence 445556665555544 223332 2222 23343 22 35899999999999998775 2 55577777654
No 251
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=32.80 E-value=2.2e+02 Score=21.54 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCC---CCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~---~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
.-++.|.-||-.-.++-++.+|++.| .|.--.+..|.. -|. ..|..++.........++.++---..+.=..-.+
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~-S~y~~l~L~g~~rl~daL~HLYVLlPVLD~~KHY 196 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGD-SRYVDLTLTGTVRLADALNHLYVLLPVLDDAKHY 196 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccC-CcceEEEEeeeEEHHHHHhhhheEeeeccCCcee
Confidence 34688888888889999999999999 343333433321 122 3577888888877888886654222222234456
Q ss_pred CCCHHHHHHHhc
Q psy7847 98 DVTDELLIRTFS 109 (170)
Q Consensus 98 ~~~~~~l~~~f~ 109 (170)
++.++++.++..
T Consensus 197 wV~~dEvdKLlr 208 (245)
T PF12623_consen 197 WVGDDEVDKLLR 208 (245)
T ss_pred eeCHHHHHHHHH
Confidence 889999998884
No 252
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.43 E-value=93 Score=18.38 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEEEecCHHHHHHHHHHhcC
Q psy7847 131 FGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 131 ~afv~f~~~~~a~~a~~~l~~ 151 (170)
+.++.|.+..+|.+|-+.|..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~ 23 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKK 23 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHH
Confidence 678999999999999888876
No 253
>PRK11901 hypothetical protein; Reviewed
Probab=31.34 E-value=2.1e+02 Score=22.69 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCE--EEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~--afv~f~~~~~a~~~~~~~~~ 86 (170)
+...++|-|-.+ -.++.|..|....+ +..+.+......|+. +| -|-.|.+.++|..|+..|+.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 455677777664 44777888887776 455666655444544 33 33469999999999988874
No 254
>KOG4008|consensus
Probab=29.30 E-value=39 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.130 Sum_probs=27.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~ 117 (170)
+.+.+||+.|+|...+++-|.++.++.|-+...
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 346799999999999999999999988755443
No 255
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=28.48 E-value=1.6e+02 Score=20.29 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=39.5
Q ss_pred eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhccC
Q psy7847 49 FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKY 111 (170)
Q Consensus 49 v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 111 (170)
+.++.++.. .+||.||+....+++..++...++-.. ++++ .++.+++..++...
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~g-~lg~---~l~~~Ei~~il~~~ 89 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVRG-VVPG---EISFEEVEHFLKPK 89 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEee-eCCC---CCCHHHHHHHHhcc
Confidence 555555433 589999999988999999988865443 4443 49999999988643
No 256
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=26.73 E-value=1.2e+02 Score=17.83 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=31.1
Q ss_pred CEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEE
Q psy7847 65 GFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134 (170)
Q Consensus 65 ~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv 134 (170)
-.+-|.-+|.+.|-.+. +..|.+.|-+-+.+..+.+.-.+ ...+|-|||
T Consensus 15 ~~viv~Ae~ee~AF~~~-------------------e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 15 IPVIVAAENEEQAFRLV-------------------EVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred EEEEEEecCHHHHHHHH-------------------HHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 34555556666655544 45677888788888888776543 344566665
No 257
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.39 E-value=2.3e+02 Score=19.76 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred CCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 29 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 29 nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
.|+..+.++.|.++.+-.|.|.+.. -.| -...|.|.+.+.++++.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 5788999999999999999776654 222 355788999999998764
No 258
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=26.36 E-value=1.2e+02 Score=18.17 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=35.3
Q ss_pred HHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 102 ELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 102 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
++|.+-|...| .+..+.-+..+..+.+...-+|+.....+-.. .++ +..+|+++|.|.-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~---ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILN---IKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEe---ehhhCCeeEEEecCc
Confidence 35666676666 35556555444445566666677654432222 333 388889888876543
No 259
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=25.48 E-value=15 Score=20.94 Aligned_cols=11 Identities=64% Similarity=1.014 Sum_probs=8.5
Q ss_pred cccEEEEEecC
Q psy7847 128 TKGFGFVSFKD 138 (170)
Q Consensus 128 ~~g~afv~f~~ 138 (170)
++|||||...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 58899999886
No 260
>PHA01632 hypothetical protein
Probab=25.44 E-value=70 Score=18.23 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.2
Q ss_pred CceEEecCCCCCCCHHHHHHHhcc
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSK 110 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~ 110 (170)
+-.+.+..+|...|+++|++++..
T Consensus 16 kiyilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 16 KIYILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEEEehhhcCCCCCHHHHHHHHHH
Confidence 345667789999999999998753
No 261
>KOG2891|consensus
Probab=24.56 E-value=87 Score=24.31 Aligned_cols=34 Identities=6% Similarity=0.160 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCC------------ccHHHHHHHhhcCCCeeEEEEE
Q psy7847 22 DFRLFCGDLGND------------VTDELLIRTFSKYPSFLKAKVV 55 (170)
Q Consensus 22 ~~~v~v~nLp~~------------~t~~~l~~~f~~~g~v~~i~~~ 55 (170)
.-+|++.+||-. -+++.|+..|..||.|..+.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 457888888742 3567899999999999888774
No 262
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=24.35 E-value=1e+02 Score=23.41 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=24.0
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEec
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 57 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~ 57 (170)
.+.|+|+|+.++..-|..++.....+..+.++.+
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~Q 140 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQ 140 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeH
Confidence 5779999999998888888864222444555444
No 263
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.21 E-value=88 Score=24.27 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.6
Q ss_pred EEEEeCCHHHHHHHHHHcC
Q psy7847 67 GFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 67 afv~f~~~~~a~~~~~~~~ 85 (170)
|||+|++..+|+.+.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~ 19 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL 19 (325)
T ss_pred CEEEECCHHHHHHHHHHHh
Confidence 7999999999999988644
No 264
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=22.73 E-value=1.2e+02 Score=19.06 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=37.3
Q ss_pred CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHH
Q psy7847 48 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDE 102 (170)
Q Consensus 48 ~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~ 102 (170)
.|.++++.+-...|+-+.|+-|+|.+.=- -.-++.+.|+.-|||..=+..+...
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~efV-vhdirVi~G~~GlfVAMPSrrt~dg 55 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNEFV-VHDIRVIEGNNGLFVAMPSRRTPDG 55 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecceEE-EeccEEEeCCcceEEEccCccCCCc
Confidence 36788998887778888999999876433 2334566778888886544444443
No 265
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=1.4e+02 Score=22.83 Aligned_cols=31 Identities=6% Similarity=0.087 Sum_probs=23.7
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKA 117 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~ 117 (170)
+....|+|||+.++-+-+.+++...-.+...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 4578899999999999999988655444333
No 266
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=22.59 E-value=92 Score=18.93 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=23.7
Q ss_pred ccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 129 KGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 129 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.|.|.|...+.+.|+.....+... -...|.||++.+
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~--g~~~~~PL~~ti 82 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRA--GRDSGHPLRATI 82 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHH--HHHTT---EEEE
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHH--hhccCCCeEEeC
Confidence 567888888888888887777652 345677887764
No 267
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.18 E-value=1.6e+02 Score=18.22 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCCCcCCEEEEEeCC
Q psy7847 49 FLKAKVVRDKRTNKTKGFGFVSFKD 73 (170)
Q Consensus 49 v~~i~~~~~~~~~~~~~~afv~f~~ 73 (170)
|.++++..-...|.-+++|-|.|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 6678887766568889999999986
No 268
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.17 E-value=1.3e+02 Score=20.23 Aligned_cols=33 Identities=15% Similarity=-0.047 Sum_probs=27.2
Q ss_pred EEEEcCCCCC-ccHHHHHHHhhcCCCeeEEEEEe
Q psy7847 24 RLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVR 56 (170)
Q Consensus 24 ~v~v~nLp~~-~t~~~l~~~f~~~g~v~~i~~~~ 56 (170)
-|.|.|||.. .+++-++.+-+.+|.+.+++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 3888899987 77788888889999998887644
No 269
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.98 E-value=1e+02 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=25.4
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
.+.|.|+|+.++...|..++.....+..+.++.++
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~Qk 137 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQK 137 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeeehH
Confidence 47789999999999999988654445555555443
No 270
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.77 E-value=2.7e+02 Score=23.28 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=63.8
Q ss_pred ccHHHHHHHhhcCCCee-EEEEEecCCC----CCcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHh
Q psy7847 34 VTDELLIRTFSKYPSFL-KAKVVRDKRT----NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTF 108 (170)
Q Consensus 34 ~t~~~l~~~f~~~g~v~-~i~~~~~~~~----~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f 108 (170)
+..+.+.+....|..+. .+..+..... +.|+. .+...+..++..+.+.-.+.+++.+...+-+.|...+
T Consensus 293 v~~e~i~~~L~~F~gl~HR~e~v~~~~gv~f~NDSKA------TN~~At~~AL~~~~~~v~lI~GG~~Kg~df~~L~~~~ 366 (448)
T COG0771 293 VPPEAILEALSSFTGLPHRLEFVGEKDGVLFINDSKA------TNVDATLAALSGFDGPVILIAGGDDKGADFSPLAEIL 366 (448)
T ss_pred CCHHHHHHHHHhCCCCCcceEEEEecCCEEEecCCCC------CCHHHHHHHHHcCCCCEEEEECCCCCCCChhHHHHHh
Confidence 34456666666664332 2333332210 23333 6888999999999977888899999999999999999
Q ss_pred ccCCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHh
Q psy7847 109 SKYPSFLKAKVVRDKR----TNKTKGFGFVSFKDPQDFIRANKEM 149 (170)
Q Consensus 109 ~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l 149 (170)
.+.-... +-+-.+.. .-...+..+..+.+.++|.......
T Consensus 367 ~~~~~~~-~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 367 AKVIKKL-VLIGEDAEKIAAALKEAGPSLVICETLEEAVQLAREL 410 (448)
T ss_pred hhcceEE-EEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHh
Confidence 8652211 11211100 0011222256777777776665543
No 271
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.31 E-value=2.3e+02 Score=17.67 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=28.9
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEe
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f 136 (170)
-+||++++..+.+.--..+.+..+.=.-+-+..+ ....||+|-+.
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEe
Confidence 6899999888877655555554444333333333 22788998877
No 272
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=20.15 E-value=2.7e+02 Score=18.82 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=33.4
Q ss_pred CcCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhc
Q psy7847 62 KTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFS 109 (170)
Q Consensus 62 ~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 109 (170)
..+||-||+.....+...++....+-..+. + ..++++++..+..
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv~~~v-~---~~i~~~ei~~l~~ 79 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHVRGVV-E---GEIDFEEIERFLT 79 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCEEeec-C---CCCCHHHHHHHhc
Confidence 478999999998888888888887655533 2 3478888887764
Done!