Query psy7847
Match_columns 170
No_of_seqs 115 out of 1416
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 20:21:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.2E-36 7.6E-41 221.5 18.4 150 15-169 8-180 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 4.5E-35 1.5E-39 205.5 17.7 143 23-169 1-166 (166)
3 2cjk_A Nuclear polyadenylated 100.0 2.6E-35 8.7E-40 207.4 15.0 145 21-169 2-165 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-34 4.7E-39 203.7 18.6 144 21-167 2-168 (168)
5 3nmr_A Cugbp ELAV-like family 100.0 1.7E-34 6E-39 204.3 18.7 147 21-168 2-175 (175)
6 1l3k_A Heterogeneous nuclear r 100.0 1.4E-34 4.7E-39 208.5 18.4 151 15-169 6-182 (196)
7 2qfj_A FBP-interacting repress 100.0 3.7E-35 1.3E-39 214.5 14.9 148 19-169 25-204 (216)
8 1fxl_A Paraneoplastic encephal 100.0 3.1E-34 1.1E-38 201.4 19.0 143 22-167 2-167 (167)
9 2g4b_A Splicing factor U2AF 65 100.0 1.3E-31 4.5E-36 189.2 16.0 138 21-168 3-172 (172)
10 3smz_A Protein raver-1, ribonu 100.0 6.3E-31 2.2E-35 199.8 19.1 145 21-169 94-263 (284)
11 1fje_B Nucleolin RBD12, protei 100.0 6.2E-32 2.1E-36 191.6 11.7 144 16-169 7-173 (175)
12 3smz_A Protein raver-1, ribonu 100.0 3.4E-30 1.2E-34 195.7 18.6 140 20-169 20-174 (284)
13 3sde_A Paraspeckle component 1 100.0 1E-29 3.5E-34 191.4 18.4 144 17-169 17-178 (261)
14 3pgw_A U1-A; protein-RNA compl 100.0 1.2E-29 4.2E-34 192.5 18.9 141 18-169 5-282 (282)
15 2yh0_A Splicing factor U2AF 65 100.0 6.2E-30 2.1E-34 184.4 15.6 139 21-169 3-193 (198)
16 2ghp_A U4/U6 snRNA-associated 100.0 5.3E-30 1.8E-34 195.4 16.0 147 16-169 35-196 (292)
17 2adc_A Polypyrimidine tract-bi 100.0 1.6E-29 5.4E-34 187.0 17.8 141 17-170 29-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.2E-30 2.5E-34 194.6 15.6 144 21-169 116-290 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.9E-29 6.6E-34 182.2 13.7 137 21-170 2-197 (198)
20 3tyt_A Heterogeneous nuclear r 100.0 1.1E-28 3.8E-33 179.7 15.2 137 21-167 3-204 (205)
21 2kn4_A Immunoglobulin G-bindin 99.9 4.8E-24 1.6E-28 149.0 12.1 114 51-169 2-149 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 3.1E-22 1.1E-26 129.5 10.5 82 86-170 18-99 (99)
23 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.9E-25 123.5 11.1 81 86-169 5-85 (110)
24 2lkz_A RNA-binding protein 5; 99.8 4.4E-21 1.5E-25 123.1 7.7 82 88-169 10-94 (95)
25 2lxi_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 122.8 5.6 80 88-169 2-82 (91)
26 3md1_A Nuclear and cytoplasmic 99.8 7E-20 2.4E-24 114.3 10.9 79 88-169 2-80 (83)
27 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.5E-20 2.6E-24 115.2 10.4 81 86-169 5-85 (87)
28 2i2y_A Fusion protein consists 99.8 4.1E-20 1.4E-24 128.0 9.2 100 62-169 11-147 (150)
29 2cqc_A Arginine/serine-rich sp 99.8 1.2E-19 4E-24 116.1 10.4 82 86-170 14-95 (95)
30 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.8E-20 3E-24 114.4 9.5 81 85-168 5-85 (85)
31 3p5t_L Cleavage and polyadenyl 99.8 2.5E-20 8.7E-25 118.3 6.4 79 88-169 2-82 (90)
32 2dnz_A Probable RNA-binding pr 99.8 2.7E-19 9.4E-24 114.4 11.1 81 86-169 4-84 (95)
33 4f25_A Polyadenylate-binding p 99.8 6.4E-20 2.2E-24 121.7 8.3 80 21-102 4-112 (115)
34 2x1f_A MRNA 3'-END-processing 99.8 1.9E-19 6.4E-24 115.6 10.2 80 87-169 2-81 (96)
35 2lea_A Serine/arginine-rich sp 99.8 2.4E-20 8E-25 127.2 6.0 102 65-169 5-126 (135)
36 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.5E-24 119.7 9.7 78 87-169 5-82 (115)
37 2e5h_A Zinc finger CCHC-type a 99.8 3.1E-19 1E-23 114.0 10.6 80 86-168 15-94 (94)
38 3ns6_A Eukaryotic translation 99.8 4.6E-20 1.6E-24 119.4 6.8 80 87-169 6-92 (100)
39 2cq0_A Eukaryotic translation 99.8 2.5E-19 8.5E-24 116.4 10.2 81 86-169 14-94 (103)
40 1whw_A Hypothetical protein ri 99.8 3.4E-19 1.2E-23 114.9 10.6 81 86-169 7-87 (99)
41 2la6_A RNA-binding protein FUS 99.8 3.7E-19 1.3E-23 114.8 10.3 80 86-168 12-99 (99)
42 1x4e_A RNA binding motif, sing 99.8 1E-19 3.5E-24 114.2 7.2 82 86-170 4-85 (85)
43 2dgs_A DAZ-associated protein 99.8 5.8E-19 2E-23 113.8 10.9 80 86-169 9-88 (99)
44 2do4_A Squamous cell carcinoma 99.8 6.3E-19 2.2E-23 113.9 11.1 80 86-169 16-95 (100)
45 2jrs_A RNA-binding protein 39; 99.8 3.5E-19 1.2E-23 116.8 9.9 81 86-169 25-105 (108)
46 1p27_B RNA-binding protein 8A; 99.8 3.9E-19 1.3E-23 116.0 10.1 81 86-169 22-102 (106)
47 1x5t_A Splicing factor 3B subu 99.8 1.9E-19 6.5E-24 115.4 8.5 81 86-169 4-85 (96)
48 2dgo_A Cytotoxic granule-assoc 99.8 5.2E-19 1.8E-23 117.1 10.6 81 86-169 14-94 (115)
49 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.8E-19 9.6E-24 115.9 9.0 81 86-169 11-91 (102)
50 2ywk_A Putative RNA-binding pr 99.8 4E-19 1.4E-23 113.7 9.6 82 85-170 14-95 (95)
51 1x5s_A Cold-inducible RNA-bind 99.8 2.9E-19 9.9E-24 115.8 9.0 81 86-169 11-91 (102)
52 1x5u_A Splicing factor 3B subu 99.8 3.7E-19 1.3E-23 115.9 9.5 81 86-169 14-94 (105)
53 2dnm_A SRP46 splicing factor; 99.8 3E-19 1E-23 116.0 8.7 82 85-169 11-92 (103)
54 1x4h_A RNA-binding protein 28; 99.8 7.3E-19 2.5E-23 115.6 10.5 81 86-169 14-100 (111)
55 2cpz_A CUG triplet repeat RNA- 99.8 4.4E-19 1.5E-23 117.4 9.5 81 86-169 24-104 (115)
56 2ek1_A RNA-binding protein 12; 99.8 2E-19 7E-24 115.0 7.5 82 86-170 14-95 (95)
57 2div_A TRNA selenocysteine ass 99.8 3.4E-19 1.1E-23 114.9 8.2 81 86-169 8-93 (99)
58 1oo0_B CG8781-PA, drosophila Y 99.8 7E-19 2.4E-23 115.6 9.9 81 86-169 25-105 (110)
59 2mss_A Protein (musashi1); RNA 99.8 1.9E-19 6.6E-24 110.3 6.7 75 89-167 1-75 (75)
60 4a8x_A RNA-binding protein wit 99.8 5.1E-19 1.8E-23 111.5 8.7 80 87-169 4-84 (88)
61 3ulh_A THO complex subunit 4; 99.8 1.2E-18 4.2E-23 113.8 10.8 80 85-168 27-106 (107)
62 3ucg_A Polyadenylate-binding p 99.8 6.8E-19 2.3E-23 111.2 9.2 79 87-169 6-84 (89)
63 2cph_A RNA binding motif prote 99.8 8.8E-19 3E-23 114.5 10.0 81 86-169 14-96 (107)
64 3n9u_C Cleavage and polyadenyl 99.8 5.2E-19 1.8E-23 123.3 9.4 81 86-169 54-136 (156)
65 1p1t_A Cleavage stimulation fa 99.8 4.8E-19 1.6E-23 115.1 8.4 79 88-169 9-87 (104)
66 2cpf_A RNA binding motif prote 99.8 6E-19 2E-23 113.5 8.7 81 86-169 4-87 (98)
67 2fy1_A RNA-binding motif prote 99.8 9.3E-19 3.2E-23 116.2 9.7 81 85-169 5-85 (116)
68 2dnh_A Bruno-like 5, RNA bindi 99.8 1.7E-18 5.7E-23 112.8 10.5 80 86-169 14-96 (105)
69 2kxn_B Transformer-2 protein h 99.8 7.5E-19 2.6E-23 118.8 9.1 81 86-169 45-125 (129)
70 1s79_A Lupus LA protein; RRM, 99.8 6.2E-19 2.1E-23 114.7 8.3 77 87-168 11-87 (103)
71 2khc_A Testis-specific RNP-typ 99.8 7E-19 2.4E-23 116.9 8.7 79 86-167 39-117 (118)
72 3pgw_S U1-70K; protein-RNA com 99.8 2.9E-19 1E-23 143.1 8.1 79 88-169 103-181 (437)
73 2dgp_A Bruno-like 4, RNA bindi 99.8 6.9E-19 2.4E-23 114.8 8.5 81 86-169 12-95 (106)
74 2d9p_A Polyadenylate-binding p 99.8 1.6E-18 5.5E-23 112.5 10.1 79 86-169 14-92 (103)
75 3s7r_A Heterogeneous nuclear r 99.8 2.1E-18 7E-23 108.6 10.2 79 85-167 9-87 (87)
76 2dng_A Eukaryotic translation 99.8 1.9E-18 6.6E-23 112.2 10.1 79 86-169 14-92 (103)
77 2wbr_A GW182, gawky, LD47780P; 99.8 7.1E-19 2.4E-23 109.9 7.5 74 87-169 7-80 (89)
78 2cqp_A RNA-binding protein 12; 99.8 6.4E-19 2.2E-23 113.4 7.6 81 86-169 14-94 (98)
79 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.4E-23 114.8 9.2 81 86-169 14-102 (113)
80 2dgx_A KIAA0430 protein; RRM d 99.8 1.7E-18 5.7E-23 111.2 9.4 78 86-169 8-89 (96)
81 2cpi_A CCR4-NOT transcription 99.8 1.1E-18 3.8E-23 115.0 8.8 81 86-169 14-100 (111)
82 1wi8_A EIF-4B, eukaryotic tran 99.8 2.3E-18 7.9E-23 112.0 9.9 79 86-169 14-93 (104)
83 3ex7_B RNA-binding protein 8A; 99.8 1.8E-18 6.1E-23 116.3 9.3 81 86-169 21-101 (126)
84 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 113.3 8.2 80 86-169 8-89 (104)
85 2kt5_A RNA and export factor-b 99.8 4.2E-18 1.4E-22 114.2 11.0 81 85-169 33-113 (124)
86 2dgv_A HnRNP M, heterogeneous 99.8 2.5E-18 8.7E-23 109.3 9.3 79 86-169 7-85 (92)
87 2cq4_A RNA binding motif prote 99.8 1.5E-18 5.3E-23 114.6 8.5 78 88-169 26-103 (114)
88 2cq3_A RNA-binding protein 9; 99.8 6.3E-18 2.2E-22 109.7 11.3 79 86-169 14-92 (103)
89 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.2E-18 1.4E-22 110.5 10.3 79 86-169 14-92 (103)
90 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-18 9.7E-23 110.8 9.4 69 19-87 16-84 (99)
91 3r27_A HnRNP L, heterogeneous 99.8 3.5E-18 1.2E-22 110.0 9.6 78 85-169 19-96 (100)
92 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.9E-23 117.9 9.0 80 87-169 42-121 (139)
93 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.1E-19 3.1E-23 113.2 6.9 81 84-169 16-97 (100)
94 2ki2_A SS-DNA binding protein 99.8 2.6E-19 8.8E-24 113.5 4.2 78 88-169 2-79 (90)
95 2do0_A HnRNP M, heterogeneous 99.8 5.7E-18 2E-22 111.8 10.8 80 86-169 14-93 (114)
96 2dgw_A Probable RNA-binding pr 99.8 6E-18 2E-22 107.4 10.3 78 86-169 9-86 (91)
97 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.2E-18 1.8E-22 118.1 10.6 82 85-169 37-118 (156)
98 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.2E-18 1.1E-22 116.8 9.4 79 86-167 62-140 (140)
99 2dh8_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 112.3 7.7 80 86-169 15-94 (105)
100 2jwn_A Embryonic polyadenylate 99.8 4E-18 1.4E-22 114.2 9.2 79 87-169 36-114 (124)
101 1sjq_A Polypyrimidine tract-bi 99.8 2.6E-18 9E-23 111.6 7.8 76 87-169 16-91 (105)
102 1x5o_A RNA binding motif, sing 99.8 9.3E-18 3.2E-22 110.8 10.6 80 86-169 24-111 (114)
103 2m2b_A RNA-binding protein 10; 99.8 7.1E-19 2.4E-23 119.2 5.2 80 86-169 22-107 (131)
104 1x4b_A Heterogeneous nuclear r 99.8 5.6E-18 1.9E-22 112.3 9.4 78 88-169 28-105 (116)
105 2dis_A Unnamed protein product 99.8 3.2E-18 1.1E-22 112.1 8.0 81 86-169 7-91 (109)
106 2rs2_A Musashi-1, RNA-binding 99.7 8E-18 2.7E-22 110.5 9.8 81 85-169 23-103 (109)
107 2err_A Ataxin-2-binding protei 99.7 5.4E-18 1.8E-22 111.3 8.9 79 86-169 28-106 (109)
108 2cqd_A RNA-binding region cont 99.7 7.7E-18 2.6E-22 111.6 9.5 80 86-169 16-95 (116)
109 2cpy_A RNA-binding protein 12; 99.7 3.4E-18 1.2E-22 113.1 7.7 79 86-169 14-93 (114)
110 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9E-18 3.1E-22 118.0 10.1 81 86-169 71-151 (165)
111 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.2E-18 7.5E-23 106.0 6.1 75 89-167 2-76 (77)
112 1iqt_A AUF1, heterogeneous nuc 99.7 9.4E-19 3.2E-23 107.2 4.4 75 89-167 1-75 (75)
113 2db1_A Heterogeneous nuclear r 99.7 5E-18 1.7E-22 113.0 8.2 79 86-169 16-97 (118)
114 1wg5_A Heterogeneous nuclear r 99.7 8.5E-18 2.9E-22 109.4 9.0 79 86-169 14-93 (104)
115 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.1E-22 107.5 10.5 79 86-169 14-92 (103)
116 1x4d_A Matrin 3; structural ge 99.7 4.5E-18 1.6E-22 110.2 7.5 77 86-169 14-91 (102)
117 2krb_A Eukaryotic translation 99.7 1.8E-18 6.3E-23 107.5 5.5 73 88-165 2-81 (81)
118 3s8s_A Histone-lysine N-methyl 99.7 1.1E-17 3.7E-22 110.1 9.4 68 20-87 4-71 (110)
119 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 4E-22 111.0 9.5 77 86-169 30-106 (119)
120 2hgl_A HNRPF protein, heteroge 99.7 4.6E-18 1.6E-22 115.8 7.6 78 87-169 44-124 (136)
121 2cq1_A PTB-like protein L; RRM 99.7 2.2E-17 7.4E-22 106.9 10.2 77 86-169 14-90 (101)
122 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.4E-22 108.5 10.0 78 86-169 21-98 (109)
123 2nlw_A Eukaryotic translation 99.7 4.6E-18 1.6E-22 110.9 6.8 78 87-169 15-99 (105)
124 1wex_A Hypothetical protein (r 99.7 1.6E-17 5.5E-22 108.1 9.3 77 86-169 14-90 (104)
125 1wez_A HnRNP H', FTP-3, hetero 99.7 8.3E-18 2.9E-22 109.1 7.8 77 87-169 15-91 (102)
126 2lxi_A RNA-binding protein 10; 99.7 2.7E-18 9.4E-23 109.2 5.3 65 22-86 1-66 (91)
127 2dnn_A RNA-binding protein 12; 99.7 1.9E-17 6.6E-22 108.6 9.5 75 88-168 17-91 (109)
128 1wel_A RNA-binding protein 12; 99.7 2.5E-18 8.6E-23 115.3 5.3 80 86-169 24-103 (124)
129 1why_A Hypothetical protein ri 99.7 2.8E-17 9.5E-22 105.5 9.5 75 86-169 16-92 (97)
130 2fc9_A NCL protein; structure 99.7 2.7E-17 9.3E-22 106.3 9.4 77 86-169 14-90 (101)
131 2cpj_A Non-POU domain-containi 99.7 2.3E-17 7.9E-22 106.3 8.9 76 85-169 13-88 (99)
132 2jvr_A Nucleolar protein 3; RN 99.7 1.4E-17 4.6E-22 109.6 7.9 78 85-169 26-104 (111)
133 2dnq_A RNA-binding protein 4B; 99.7 4.5E-17 1.5E-21 103.1 10.1 73 86-169 7-79 (90)
134 3q2s_C Cleavage and polyadenyl 99.7 8.4E-18 2.9E-22 124.1 7.7 81 86-169 67-149 (229)
135 1x4c_A Splicing factor, argini 99.7 3.5E-17 1.2E-21 107.2 9.6 74 86-169 14-92 (108)
136 2a3j_A U1 small nuclear ribonu 99.7 2E-17 7E-22 111.3 8.6 78 86-169 28-109 (127)
137 2hgn_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 116.8 4.6 78 86-169 45-122 (139)
138 3lqv_A PRE-mRNA branch site pr 99.7 4.3E-17 1.5E-21 107.8 9.9 78 86-169 7-84 (115)
139 1whx_A Hypothetical protein ri 99.7 2.8E-17 9.7E-22 108.2 8.8 74 87-169 10-83 (111)
140 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.2E-21 102.3 8.7 74 86-168 11-85 (85)
141 2hvz_A Splicing factor, argini 99.7 1.4E-17 4.8E-22 107.7 7.0 73 89-169 2-74 (101)
142 2lmi_A GRSF-1, G-rich sequence 99.7 4.8E-18 1.6E-22 111.2 4.8 79 86-169 10-91 (107)
143 1fxl_A Paraneoplastic encephal 99.7 5.9E-17 2E-21 113.0 10.7 80 87-169 2-81 (167)
144 1x4g_A Nucleolysin TIAR; struc 99.7 3.3E-17 1.1E-21 107.4 8.9 78 83-169 21-98 (109)
145 2xnq_A Nuclear polyadenylated 99.7 7.6E-17 2.6E-21 103.6 10.3 75 84-169 19-94 (97)
146 1b7f_A Protein (SXL-lethal pro 99.7 4.5E-17 1.6E-21 113.8 9.7 81 86-169 2-82 (168)
147 2e5h_A Zinc finger CCHC-type a 99.7 9.9E-17 3.4E-21 102.2 10.4 70 17-86 11-80 (94)
148 2fc8_A NCL protein; structure 99.7 6.2E-17 2.1E-21 104.7 9.5 78 86-169 14-91 (102)
149 2la4_A Nuclear and cytoplasmic 99.7 3.3E-17 1.1E-21 105.9 8.1 74 87-169 27-100 (101)
150 1nu4_A U1A RNA binding domain; 99.7 1.9E-17 6.6E-22 106.2 6.9 79 85-169 6-88 (97)
151 2jvo_A Nucleolar protein 3; nu 99.7 7.6E-17 2.6E-21 105.6 9.9 74 85-169 29-102 (108)
152 1x4f_A Matrin 3; structural ge 99.7 2.3E-17 8E-22 108.4 7.4 78 85-169 23-101 (112)
153 2cqc_A Arginine/serine-rich sp 99.7 7.4E-17 2.5E-21 103.0 9.5 72 15-86 8-79 (95)
154 2e5j_A Methenyltetrahydrofolat 99.7 4.4E-17 1.5E-21 104.6 8.5 75 87-169 19-93 (97)
155 2lkz_A RNA-binding protein 5; 99.7 1.4E-17 4.9E-22 106.6 6.1 67 21-87 8-76 (95)
156 1x5u_A Splicing factor 3B subu 99.7 8.8E-17 3E-21 104.5 9.9 72 15-86 8-79 (105)
157 4f02_A Polyadenylate-binding p 99.7 7E-17 2.4E-21 117.7 10.4 80 87-169 15-94 (213)
158 3s7r_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 101.7 8.7 68 16-83 5-72 (87)
159 3lqv_A PRE-mRNA branch site pr 99.7 4.7E-17 1.6E-21 107.6 8.4 92 19-113 5-109 (115)
160 2jrs_A RNA-binding protein 39; 99.7 1E-16 3.6E-21 105.0 9.9 73 14-86 18-90 (108)
161 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.9E-17 2.3E-21 101.0 8.6 69 19-87 4-72 (85)
162 2la6_A RNA-binding protein FUS 99.7 1.1E-16 3.6E-21 103.2 9.8 72 16-87 7-86 (99)
163 2dnm_A SRP46 splicing factor; 99.7 5.5E-17 1.9E-21 105.2 8.5 72 15-86 6-77 (103)
164 2kxn_B Transformer-2 protein h 99.7 7.5E-17 2.6E-21 108.9 9.4 73 14-86 38-110 (129)
165 2f3j_A RNA and export factor b 99.7 5.7E-17 1.9E-21 115.2 9.1 79 87-169 88-166 (177)
166 2cq0_A Eukaryotic translation 99.7 9.1E-17 3.1E-21 104.2 9.4 73 15-87 8-80 (103)
167 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-18 1.1E-22 110.7 2.5 79 86-169 16-94 (101)
168 2khc_A Testis-specific RNP-typ 99.7 9E-17 3.1E-21 106.7 9.5 71 17-87 35-105 (118)
169 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.4E-21 105.5 10.2 71 16-86 19-89 (115)
170 2cpx_A Hypothetical protein FL 99.7 8E-18 2.7E-22 111.3 4.2 81 86-169 24-104 (115)
171 1x4e_A RNA binding motif, sing 99.7 5.7E-17 1.9E-21 101.5 7.9 67 20-86 3-69 (85)
172 3ns6_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 105.7 7.1 67 20-86 4-76 (100)
173 2dgt_A RNA-binding protein 30; 99.7 1.6E-16 5.4E-21 101.0 10.0 73 86-169 9-81 (92)
174 1whw_A Hypothetical protein ri 99.7 1.2E-16 3.9E-21 102.9 9.5 69 18-86 4-72 (99)
175 2kvi_A Nuclear polyadenylated 99.7 1E-16 3.4E-21 102.8 9.1 76 83-169 6-82 (96)
176 2div_A TRNA selenocysteine ass 99.7 9.5E-17 3.3E-21 103.3 9.0 69 18-86 5-74 (99)
177 1s79_A Lupus LA protein; RRM, 99.7 8.3E-17 2.9E-21 104.6 8.7 66 19-86 8-73 (103)
178 2dgs_A DAZ-associated protein 99.7 1.7E-16 5.7E-21 102.2 10.1 69 17-86 5-73 (99)
179 2do4_A Squamous cell carcinoma 99.7 1.9E-16 6.6E-21 102.1 10.4 69 17-86 12-80 (100)
180 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.5E-17 3.3E-21 100.8 8.7 67 20-86 4-70 (87)
181 2cqd_A RNA-binding region cont 99.7 1.8E-16 6E-21 105.0 10.4 72 15-86 10-81 (116)
182 2dnz_A Probable RNA-binding pr 99.7 1.9E-16 6.6E-21 101.0 10.2 67 20-86 3-69 (95)
183 2dgu_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 103.9 9.0 74 85-169 9-82 (103)
184 2dgo_A Cytotoxic granule-assoc 99.7 1.7E-16 5.9E-21 104.8 10.2 72 15-86 8-79 (115)
185 2xs2_A Deleted in azoospermia- 99.7 3.3E-17 1.1E-21 106.1 6.5 77 87-169 9-85 (102)
186 2dgp_A Bruno-like 4, RNA bindi 99.7 8.3E-17 2.9E-21 104.8 8.5 71 17-87 8-78 (106)
187 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.3E-21 100.7 8.9 74 86-169 4-77 (88)
188 3md1_A Nuclear and cytoplasmic 99.7 1.3E-16 4.6E-21 99.3 8.9 66 22-87 1-66 (83)
189 2rs2_A Musashi-1, RNA-binding 99.7 8E-17 2.7E-21 105.7 8.1 72 14-85 17-88 (109)
190 2x1f_A MRNA 3'-END-processing 99.7 1.4E-16 4.8E-21 102.0 8.9 67 21-87 1-67 (96)
191 1x4h_A RNA-binding protein 28; 99.7 2E-16 6.7E-21 103.8 9.8 69 17-85 10-78 (111)
192 2cq4_A RNA binding motif prote 99.7 5.7E-17 2E-21 107.0 7.3 66 20-86 23-88 (114)
193 2m2b_A RNA-binding protein 10; 99.7 5.9E-17 2E-21 109.6 7.4 73 14-87 15-89 (131)
194 2dnh_A Bruno-like 5, RNA bindi 99.7 2.4E-16 8.2E-21 102.5 10.1 67 19-86 12-78 (105)
195 2dnp_A RNA-binding protein 14; 99.7 1.3E-16 4.3E-21 101.0 8.4 73 86-169 8-80 (90)
196 2cpd_A Apobec-1 stimulating pr 99.7 3.3E-16 1.1E-20 100.8 10.5 74 85-169 13-88 (99)
197 1fjc_A Nucleolin RBD2, protein 99.7 4.3E-17 1.5E-21 104.4 6.2 76 86-169 15-90 (96)
198 2dha_A FLJ20171 protein; RRM d 99.7 6.7E-17 2.3E-21 108.2 7.3 88 75-168 12-103 (123)
199 3p5t_L Cleavage and polyadenyl 99.7 3.5E-17 1.2E-21 103.7 5.7 64 23-86 2-67 (90)
200 1p27_B RNA-binding protein 8A; 99.7 1.7E-16 5.7E-21 103.4 9.0 68 19-86 20-87 (106)
201 1x5s_A Cold-inducible RNA-bind 99.7 1.7E-16 5.7E-21 102.7 8.9 70 17-86 7-76 (102)
202 2lcw_A RNA-binding protein FUS 99.5 2.2E-18 7.6E-23 114.3 0.0 81 86-169 6-94 (116)
203 2cph_A RNA binding motif prote 99.7 2.5E-16 8.6E-21 102.6 9.8 71 16-86 9-81 (107)
204 2dhg_A TRNA selenocysteine ass 99.7 2.3E-16 7.9E-21 102.4 9.4 70 17-87 4-74 (104)
205 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4.1E-21 103.4 7.8 70 17-86 7-76 (102)
206 2hgm_A HNRPF protein, heteroge 99.7 5.8E-17 2E-21 108.8 6.5 79 85-169 40-120 (126)
207 3zzy_A Polypyrimidine tract-bi 99.7 5E-16 1.7E-20 104.5 10.5 77 85-169 26-105 (130)
208 1x5t_A Splicing factor 3B subu 99.7 1.7E-16 5.8E-21 101.5 7.8 68 20-87 3-71 (96)
209 2d9p_A Polyadenylate-binding p 99.7 3.5E-16 1.2E-20 101.4 9.3 70 16-87 9-78 (103)
210 1wf1_A RNA-binding protein RAL 99.7 1.7E-16 6E-21 104.1 7.9 72 87-169 27-99 (110)
211 2ywk_A Putative RNA-binding pr 99.7 2.2E-16 7.4E-21 100.8 7.9 70 17-87 11-80 (95)
212 2fy1_A RNA-binding motif prote 99.7 3.6E-16 1.2E-20 103.6 9.3 68 18-86 3-70 (116)
213 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.9E-17 3.4E-21 103.6 6.3 72 14-87 11-83 (100)
214 2e44_A Insulin-like growth fac 99.7 1.6E-16 5.6E-21 101.6 7.3 77 86-169 14-91 (96)
215 3ulh_A THO complex subunit 4; 99.7 4.1E-16 1.4E-20 101.7 9.3 71 16-87 23-93 (107)
216 1oo0_B CG8781-PA, drosophila Y 99.7 3.2E-16 1.1E-20 102.8 8.8 69 19-87 23-91 (110)
217 3md3_A Nuclear and cytoplasmic 99.7 2.8E-16 9.5E-21 109.4 8.9 78 88-169 1-78 (166)
218 3n9u_C Cleavage and polyadenyl 99.7 2.8E-16 9.5E-21 109.4 8.8 66 21-86 54-121 (156)
219 1u6f_A Tcubp1, RNA-binding pro 99.7 4.4E-16 1.5E-20 106.2 9.7 70 17-86 37-106 (139)
220 2dh8_A DAZ-associated protein 99.7 3.7E-16 1.3E-20 101.6 8.8 69 17-86 11-79 (105)
221 1sjr_A Polypyrimidine tract-bi 99.7 3.8E-16 1.3E-20 108.9 9.3 75 88-169 47-123 (164)
222 2wbr_A GW182, gawky, LD47780P; 99.7 7.6E-16 2.6E-20 96.2 9.7 79 21-109 6-88 (89)
223 2dng_A Eukaryotic translation 99.7 6.2E-16 2.1E-20 100.2 9.6 68 17-86 10-77 (103)
224 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 6.2E-16 2.1E-20 105.4 10.0 71 16-86 57-127 (140)
225 1wi8_A EIF-4B, eukaryotic tran 99.7 5.3E-16 1.8E-20 100.7 9.1 66 19-86 12-78 (104)
226 2cpy_A RNA-binding protein 12; 99.7 2.9E-16 1E-20 103.7 8.0 70 15-86 8-78 (114)
227 3egn_A RNA-binding protein 40; 99.7 5.1E-17 1.7E-21 111.5 4.3 78 86-169 44-129 (143)
228 2cqg_A TDP-43, TAR DNA-binding 99.7 8.1E-16 2.8E-20 99.6 9.7 68 16-83 9-76 (103)
229 2cpf_A RNA binding motif prote 99.7 3.6E-16 1.2E-20 100.4 8.0 68 20-87 3-73 (98)
230 2cpe_A RNA-binding protein EWS 99.7 5.5E-16 1.9E-20 102.1 9.0 71 17-87 10-88 (113)
231 2kt5_A RNA and export factor-b 99.7 1.4E-15 4.7E-20 101.8 11.0 69 17-86 30-98 (124)
232 1x5o_A RNA binding motif, sing 99.7 1.3E-15 4.5E-20 100.4 10.7 69 18-87 21-89 (114)
233 2qfj_A FBP-interacting repress 99.7 5.5E-16 1.9E-20 112.5 9.6 79 87-168 28-106 (216)
234 3tyt_A Heterogeneous nuclear r 99.7 6.8E-16 2.3E-20 112.1 10.0 75 86-168 3-78 (205)
235 2cqp_A RNA-binding protein 12; 99.7 3.1E-16 1.1E-20 100.7 7.3 70 18-87 11-80 (98)
236 3ucg_A Polyadenylate-binding p 99.7 5.2E-16 1.8E-20 97.8 8.2 65 22-87 6-70 (89)
237 2j8a_A Histone-lysine N-methyl 99.7 3.4E-16 1.2E-20 104.2 7.5 79 88-169 3-95 (136)
238 2krb_A Eukaryotic translation 99.6 4.6E-16 1.6E-20 96.5 7.7 64 22-87 1-70 (81)
239 2cq3_A RNA-binding protein 9; 99.6 1.9E-15 6.5E-20 97.9 11.0 71 15-87 8-78 (103)
240 1l3k_A Heterogeneous nuclear r 99.6 8.1E-16 2.8E-20 110.1 9.9 80 86-169 12-91 (196)
241 1wg5_A Heterogeneous nuclear r 99.6 7.9E-16 2.7E-20 100.0 8.9 68 17-86 10-78 (104)
242 2cq2_A Hypothetical protein LO 99.6 3E-16 1E-20 103.3 7.0 75 86-169 24-105 (114)
243 1sjq_A Polypyrimidine tract-bi 99.6 6.6E-16 2.3E-20 100.3 8.4 63 18-86 12-74 (105)
244 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-16 7.2E-21 97.0 5.7 63 23-85 1-63 (77)
245 3ex7_B RNA-binding protein 8A; 99.6 7.7E-16 2.6E-20 103.3 9.0 68 19-86 19-86 (126)
246 2mss_A Protein (musashi1); RNA 99.6 3.1E-16 1.1E-20 95.8 6.4 62 24-86 1-62 (75)
247 4a8x_A RNA-binding protein wit 99.6 5.5E-16 1.9E-20 97.4 7.7 67 21-87 3-70 (88)
248 2e5g_A U6 snRNA-specific termi 99.6 6.9E-16 2.3E-20 98.4 8.3 75 86-169 7-81 (94)
249 1p1t_A Cleavage stimulation fa 99.6 1.8E-16 6.2E-21 102.8 5.6 66 21-86 7-72 (104)
250 1x5p_A Negative elongation fac 99.6 1.8E-15 6E-20 97.1 10.2 73 86-169 14-86 (97)
251 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.6E-15 5.5E-20 98.2 9.9 70 15-86 8-77 (103)
252 2do0_A HnRNP M, heterogeneous 99.6 1.4E-15 4.9E-20 100.2 9.8 70 17-87 10-79 (114)
253 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.5E-20 96.3 9.2 74 86-169 10-83 (89)
254 2ek1_A RNA-binding protein 12; 99.6 2.6E-16 8.8E-21 100.4 5.9 69 19-87 12-80 (95)
255 3beg_B Splicing factor, argini 99.6 4.3E-16 1.5E-20 103.1 7.1 72 87-168 16-92 (115)
256 2lea_A Serine/arginine-rich sp 99.6 2.7E-16 9.3E-21 107.0 6.3 75 12-86 37-111 (135)
257 2pe8_A Splicing factor 45; RRM 99.6 2.2E-15 7.5E-20 98.1 10.3 81 86-169 7-93 (105)
258 1wez_A HnRNP H', FTP-3, hetero 99.6 5.9E-16 2E-20 100.4 7.4 68 16-86 9-76 (102)
259 2err_A Ataxin-2-binding protei 99.6 7.6E-16 2.6E-20 100.9 8.0 72 14-87 21-92 (109)
260 1x4b_A Heterogeneous nuclear r 99.6 4.2E-16 1.4E-20 103.1 6.8 64 20-83 25-88 (116)
261 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 9E-20 100.4 10.6 73 88-169 26-101 (124)
262 2dnn_A RNA-binding protein 12; 99.6 7.5E-16 2.6E-20 101.0 7.7 66 18-86 12-77 (109)
263 2jwn_A Embryonic polyadenylate 99.6 2.1E-16 7E-21 105.8 5.1 65 21-86 35-99 (124)
264 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-15 5.2E-20 105.5 9.7 68 19-86 36-103 (156)
265 2dgv_A HnRNP M, heterogeneous 99.6 1.9E-15 6.6E-20 95.8 9.3 66 19-86 5-70 (92)
266 2db1_A Heterogeneous nuclear r 99.6 9.2E-16 3.2E-20 102.0 7.9 68 17-86 12-82 (118)
267 1wel_A RNA-binding protein 12; 99.6 5.6E-16 1.9E-20 103.8 6.9 69 17-86 20-88 (124)
268 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.9E-20 99.0 8.5 68 17-86 10-83 (105)
269 2diu_A KIAA0430 protein; struc 99.6 1.8E-15 6E-20 95.5 8.5 70 87-169 8-83 (96)
270 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4E-20 100.8 8.1 64 86-150 7-73 (114)
271 2kn4_A Immunoglobulin G-bindin 99.6 1.6E-15 5.4E-20 105.5 9.1 68 19-86 67-134 (158)
272 2dgw_A Probable RNA-binding pr 99.6 2.3E-15 7.7E-20 95.4 9.0 66 18-86 6-71 (91)
273 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.6E-20 105.5 10.1 83 86-168 2-86 (175)
274 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.9E-20 102.5 7.8 66 16-83 36-103 (126)
275 2hgl_A HNRPF protein, heteroge 99.6 7.6E-16 2.6E-20 104.8 6.9 68 17-86 39-109 (136)
276 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 95.3 7.6 70 87-166 6-86 (87)
277 2ad9_A Polypyrimidine tract-bi 99.6 1.8E-15 6.1E-20 100.5 8.2 65 15-85 24-88 (119)
278 2lmi_A GRSF-1, G-rich sequence 99.6 7.5E-16 2.6E-20 100.6 6.4 68 17-86 6-76 (107)
279 1x4a_A Splicing factor, argini 99.6 8.5E-15 2.9E-19 95.8 11.4 68 16-86 16-83 (109)
280 2cqh_A IGF-II mRNA-binding pro 99.6 1E-15 3.5E-20 97.4 6.7 75 86-169 7-82 (93)
281 3r27_A HnRNP L, heterogeneous 99.6 2E-15 6.9E-20 97.1 7.8 65 16-86 15-79 (100)
282 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-15 5.4E-20 100.2 7.1 65 19-84 5-72 (114)
283 2xs2_A Deleted in azoospermia- 99.6 4.1E-16 1.4E-20 100.9 4.1 63 19-82 6-68 (102)
284 2dis_A Unnamed protein product 99.6 2.5E-15 8.4E-20 98.3 7.7 66 20-85 6-73 (109)
285 2ki2_A SS-DNA binding protein 99.6 5.2E-16 1.8E-20 98.1 4.2 64 23-87 2-65 (90)
286 2cjk_A Nuclear polyadenylated 99.6 2.3E-15 7.9E-20 105.0 8.0 77 87-168 3-79 (167)
287 2dgx_A KIAA0430 protein; RRM d 99.6 3.7E-15 1.3E-19 95.4 8.3 65 19-86 6-74 (96)
288 2cq1_A PTB-like protein L; RRM 99.6 4.6E-15 1.6E-19 95.9 8.7 61 19-85 12-72 (101)
289 1wex_A Hypothetical protein (r 99.6 6.3E-15 2.1E-19 95.8 9.3 62 18-85 11-72 (104)
290 2cpx_A Hypothetical protein FL 99.6 1.2E-15 4E-20 100.8 5.7 73 14-86 17-89 (115)
291 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.2E-15 1.8E-19 103.8 9.3 67 20-86 70-136 (165)
292 2bz2_A Negative elongation fac 99.6 6.5E-15 2.2E-19 98.3 9.3 74 85-169 37-110 (121)
293 1iqt_A AUF1, heterogeneous nuc 99.6 7.4E-16 2.5E-20 94.1 4.3 60 24-83 1-60 (75)
294 1x4d_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 96.7 7.5 62 19-86 12-74 (102)
295 2cpi_A CCR4-NOT transcription 99.6 3.3E-15 1.1E-19 98.2 7.6 70 18-87 11-86 (111)
296 1wf0_A TDP-43, TAR DNA-binding 99.6 1.6E-15 5.4E-20 95.5 5.8 74 86-169 4-77 (88)
297 2voo_A Lupus LA protein; RNA-b 99.6 7.4E-15 2.5E-19 105.6 9.9 77 87-168 109-185 (193)
298 2dha_A FLJ20171 protein; RRM d 99.6 1.3E-15 4.5E-20 101.9 5.4 64 19-83 20-87 (123)
299 2hvz_A Splicing factor, argini 99.6 1.6E-15 5.5E-20 97.9 5.6 59 23-86 1-59 (101)
300 1x4c_A Splicing factor, argini 99.6 1.3E-14 4.5E-19 94.8 10.0 61 19-86 12-72 (108)
301 1fj7_A Nucleolin RBD1, protein 99.6 4.7E-16 1.6E-20 100.4 2.9 67 18-86 13-79 (101)
302 3q2s_C Cleavage and polyadenyl 99.6 3.2E-15 1.1E-19 110.2 7.7 67 21-87 67-135 (229)
303 2jvo_A Nucleolar protein 3; nu 99.6 8.8E-15 3E-19 95.7 8.6 66 14-87 23-88 (108)
304 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-14 4.5E-19 109.6 10.5 79 85-169 7-89 (282)
305 1why_A Hypothetical protein ri 99.6 1.8E-14 6.1E-19 92.3 9.6 63 18-86 13-75 (97)
306 2fc9_A NCL protein; structure 99.6 8.9E-15 3.1E-19 94.3 8.2 66 17-86 10-75 (101)
307 3u1l_A PRE-mRNA-splicing facto 99.6 6.8E-15 2.3E-19 108.7 8.4 76 85-169 132-228 (240)
308 2a3j_A U1 small nuclear ribonu 99.6 1.1E-14 3.9E-19 97.9 8.8 66 18-86 25-94 (127)
309 2fc8_A NCL protein; structure 99.6 1.2E-14 4.2E-19 93.8 8.5 70 14-86 7-76 (102)
310 2hgn_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 103.2 4.7 67 17-86 41-107 (139)
311 2dnq_A RNA-binding protein 4B; 99.6 2.4E-14 8.3E-19 90.4 9.5 61 18-86 4-64 (90)
312 2adc_A Polypyrimidine tract-bi 99.6 1E-14 3.5E-19 107.4 8.7 76 85-168 32-108 (229)
313 2ytc_A PRE-mRNA-splicing facto 99.6 2.4E-14 8.3E-19 89.3 9.2 64 17-86 7-71 (85)
314 2f3j_A RNA and export factor b 99.6 1.5E-14 5.2E-19 102.6 9.1 68 19-87 85-152 (177)
315 2e5j_A Methenyltetrahydrofolat 99.6 3.2E-14 1.1E-18 91.1 9.7 66 17-87 14-79 (97)
316 3d2w_A TAR DNA-binding protein 99.6 1.2E-14 4.2E-19 91.8 7.5 58 17-79 6-63 (89)
317 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4.2E-19 95.4 7.4 65 18-86 24-89 (111)
318 2cpj_A Non-POU domain-containi 99.5 2.2E-14 7.6E-19 92.1 8.5 65 17-87 10-74 (99)
319 2la4_A Nuclear and cytoplasmic 99.5 3.5E-14 1.2E-18 91.5 9.0 64 17-86 22-85 (101)
320 1qm9_A Polypyrimidine tract-bi 99.5 9.6E-15 3.3E-19 104.8 7.0 75 87-169 3-78 (198)
321 2xnq_A Nuclear polyadenylated 99.5 4E-14 1.4E-18 90.8 9.1 64 16-87 16-80 (97)
322 3v4m_A Splicing factor U2AF 65 99.5 2.9E-14 9.8E-19 92.8 8.4 80 87-169 5-96 (105)
323 2lcw_A RNA-binding protein FUS 99.3 5.1E-16 1.8E-20 102.8 0.0 69 18-86 3-79 (116)
324 1jmt_A Splicing factor U2AF 35 99.5 3.2E-15 1.1E-19 97.2 3.8 71 93-167 21-103 (104)
325 1x4f_A Matrin 3; structural ge 99.5 2.3E-14 8E-19 94.1 7.8 61 19-85 22-83 (112)
326 2dgt_A RNA-binding protein 30; 99.5 4.3E-14 1.5E-18 89.6 8.7 62 17-86 5-66 (92)
327 1nu4_A U1A RNA binding domain; 99.5 8.4E-15 2.9E-19 93.7 5.5 66 18-86 4-73 (97)
328 2kvi_A Nuclear polyadenylated 99.5 5E-14 1.7E-18 90.0 8.6 62 17-86 5-67 (96)
329 1x4g_A Nucleolysin TIAR; struc 99.5 3.8E-14 1.3E-18 92.7 8.1 63 18-86 21-83 (109)
330 2dit_A HIV TAT specific factor 99.5 7.1E-14 2.4E-18 91.9 9.4 77 86-169 14-101 (112)
331 2g4b_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 99.1 8.8 70 18-87 90-159 (172)
332 2e5g_A U6 snRNA-specific termi 99.5 1.1E-13 3.7E-18 88.1 9.7 62 19-86 5-66 (94)
333 2i2y_A Fusion protein consists 99.5 5.2E-14 1.8E-18 97.1 8.4 66 16-86 67-132 (150)
334 2dnp_A RNA-binding protein 14; 99.5 4.8E-14 1.6E-18 89.0 7.5 62 17-86 4-65 (90)
335 3sde_A Paraspeckle component 1 99.5 5.7E-14 2E-18 105.3 9.1 75 86-169 21-95 (261)
336 2cq2_A Hypothetical protein LO 99.5 3.5E-14 1.2E-18 93.4 6.9 64 19-88 22-87 (114)
337 1fje_B Nucleolin RBD12, protei 99.5 4.9E-15 1.7E-19 104.3 3.0 79 86-169 12-90 (175)
338 1whx_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 93.5 6.6 61 21-87 9-69 (111)
339 1wf1_A RNA-binding protein RAL 99.5 8.4E-14 2.9E-18 91.2 8.6 60 19-86 24-84 (110)
340 3pgw_S U1-70K; protein-RNA com 99.5 6.7E-14 2.3E-18 112.1 9.5 69 19-87 99-167 (437)
341 3beg_B Splicing factor, argini 99.5 3E-14 1E-18 94.2 6.1 61 20-87 14-74 (115)
342 2dgu_A Heterogeneous nuclear r 99.5 8.7E-14 3E-18 90.0 8.0 60 19-86 8-67 (103)
343 2yh0_A Splicing factor U2AF 65 99.5 1.3E-13 4.3E-18 98.7 9.4 68 19-86 111-178 (198)
344 2cpd_A Apobec-1 stimulating pr 99.5 2.9E-13 1E-17 86.8 9.8 62 17-86 10-73 (99)
345 1fjc_A Nucleolin RBD2, protein 99.5 2.4E-14 8.2E-19 91.4 4.5 63 19-86 13-75 (96)
346 2e44_A Insulin-like growth fac 99.5 9E-14 3.1E-18 88.7 7.1 65 19-87 12-77 (96)
347 3ue2_A Poly(U)-binding-splicin 99.5 1.8E-13 6.1E-18 90.8 8.3 81 86-169 19-108 (118)
348 1wf0_A TDP-43, TAR DNA-binding 99.5 5.8E-14 2E-18 88.3 5.7 56 20-80 3-58 (88)
349 2j8a_A Histone-lysine N-methyl 99.5 7.2E-14 2.5E-18 93.0 6.2 64 23-86 3-80 (136)
350 3egn_A RNA-binding protein 40; 99.5 2.3E-14 7.8E-19 98.2 3.7 69 17-86 40-114 (143)
351 2cqh_A IGF-II mRNA-binding pro 99.5 8.3E-14 2.8E-18 88.4 6.1 61 19-86 5-66 (93)
352 1sjr_A Polypyrimidine tract-bi 99.5 2.4E-13 8.3E-18 94.7 8.5 65 19-87 43-107 (164)
353 2voo_A Lupus LA protein; RNA-b 99.5 2.2E-13 7.6E-18 97.9 8.5 63 22-85 109-171 (193)
354 2e5i_A Heterogeneous nuclear r 99.5 9.8E-13 3.3E-17 87.9 11.0 59 23-87 26-85 (124)
355 2hzc_A Splicing factor U2AF 65 99.5 1.6E-13 5.5E-18 85.8 6.7 61 20-87 4-75 (87)
356 1wg1_A KIAA1579 protein, homol 99.4 2E-13 6.8E-18 85.8 6.9 59 21-86 4-62 (88)
357 3zzy_A Polypyrimidine tract-bi 99.4 5E-13 1.7E-17 89.8 8.7 64 19-87 25-89 (130)
358 1x5p_A Negative elongation fac 99.4 1.3E-12 4.5E-17 83.5 9.8 61 18-86 11-71 (97)
359 2bz2_A Negative elongation fac 99.4 1.1E-12 3.7E-17 87.4 8.1 63 17-87 34-96 (121)
360 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.8E-17 101.6 8.3 77 86-168 17-97 (345)
361 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.4E-12 8.1E-17 82.9 8.5 63 97-169 27-89 (100)
362 2diu_A KIAA0430 protein; struc 99.4 3.1E-12 1E-16 80.6 8.4 56 21-86 7-68 (96)
363 2pe8_A Splicing factor 45; RRM 99.4 3.6E-12 1.2E-16 82.8 9.0 68 20-87 6-79 (105)
364 3s6e_A RNA-binding protein 39; 99.4 1.5E-12 5.1E-17 85.8 6.9 76 87-169 7-92 (114)
365 3u1l_A PRE-mRNA-splicing facto 99.3 7.3E-12 2.5E-16 92.5 8.5 63 19-87 131-202 (240)
366 3tht_A Alkylated DNA repair pr 99.3 1.9E-11 6.5E-16 94.7 8.8 64 18-87 14-79 (345)
367 2dit_A HIV TAT specific factor 99.2 8.7E-11 3E-15 77.0 9.9 68 16-87 9-87 (112)
368 3v4m_A Splicing factor U2AF 65 99.2 7.5E-11 2.6E-15 76.5 7.4 67 21-87 4-82 (105)
369 1jmt_A Splicing factor U2AF 35 99.1 2.1E-11 7.3E-16 79.0 3.5 60 27-87 20-91 (104)
370 1owx_A Lupus LA protein, SS-B, 99.1 2.7E-10 9.1E-15 75.4 8.6 75 86-167 17-93 (121)
371 2dnr_A Synaptojanin-1; RRM dom 99.1 1.6E-10 5.6E-15 72.1 7.0 71 87-169 7-85 (91)
372 3ue2_A Poly(U)-binding-splicin 99.1 2.7E-10 9.1E-15 75.4 7.5 67 21-87 19-94 (118)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 1E-09 3.5E-14 70.5 9.9 60 22-86 10-76 (100)
374 3dxb_A Thioredoxin N-terminall 99.0 6.4E-10 2.2E-14 81.2 8.0 96 71-169 103-212 (222)
375 1owx_A Lupus LA protein, SS-B, 99.0 2.4E-09 8.2E-14 70.8 7.9 65 16-86 12-78 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 6.8E-10 2.3E-14 69.7 4.2 73 86-170 14-95 (95)
377 3s6e_A RNA-binding protein 39; 98.8 1.9E-08 6.6E-13 66.0 8.0 82 19-108 4-99 (114)
378 2l9w_A U4/U6 snRNA-associated- 98.5 1.1E-06 3.9E-11 56.2 9.3 82 75-165 6-95 (117)
379 1whv_A Poly(A)-specific ribonu 98.3 6.8E-06 2.3E-10 51.5 9.5 71 12-91 6-78 (100)
380 2dnr_A Synaptojanin-1; RRM dom 98.3 2.4E-06 8.2E-11 53.2 6.8 70 21-99 6-87 (91)
381 3dxb_A Thioredoxin N-terminall 98.2 2.3E-06 8E-11 62.1 6.6 54 34-87 141-198 (222)
382 1uw4_A UPF3X; nonsense mediate 98.0 3E-05 1E-09 48.4 7.7 68 23-92 2-71 (91)
383 1ufw_A Synaptojanin 2; RNP dom 98.0 4.9E-06 1.7E-10 52.1 3.1 59 20-87 13-80 (95)
384 2dhx_A Poly (ADP-ribose) polym 97.9 8.3E-05 2.8E-09 47.1 8.4 72 21-100 7-99 (104)
385 1uw4_A UPF3X; nonsense mediate 97.9 5.3E-05 1.8E-09 47.3 7.4 64 89-152 3-68 (91)
386 1wey_A Calcipressin 1; structu 97.9 3.1E-05 1.1E-09 49.3 5.7 74 87-169 5-83 (104)
387 3ctr_A Poly(A)-specific ribonu 97.7 5.7E-05 2E-09 47.5 4.4 54 23-85 7-60 (101)
388 2l9w_A U4/U6 snRNA-associated- 97.6 0.0004 1.4E-08 44.5 7.4 69 19-93 18-95 (117)
389 2l08_A Regulator of nonsense t 97.5 0.00016 5.3E-09 45.5 5.1 70 21-92 8-79 (97)
390 1whv_A Poly(A)-specific ribonu 97.5 0.00036 1.2E-08 43.7 6.6 54 88-150 17-70 (100)
391 2l08_A Regulator of nonsense t 97.5 0.00015 5.3E-09 45.5 4.9 67 85-151 7-75 (97)
392 3ctr_A Poly(A)-specific ribonu 97.4 0.00032 1.1E-08 44.1 5.2 53 89-150 8-60 (101)
393 2dhx_A Poly (ADP-ribose) polym 97.2 0.0034 1.2E-07 39.7 8.5 67 87-165 8-79 (104)
394 1wwh_A Nucleoporin 35, nucleop 96.8 0.0053 1.8E-07 40.0 6.8 62 87-159 24-85 (119)
395 3pq1_A Poly(A) RNA polymerase; 96.0 0.0033 1.1E-07 50.4 2.9 55 22-82 53-107 (464)
396 1wwh_A Nucleoporin 35, nucleop 95.7 0.078 2.7E-06 34.4 7.7 59 18-83 20-78 (119)
397 3pq1_A Poly(A) RNA polymerase; 95.5 0.0077 2.6E-07 48.3 3.0 56 86-147 52-107 (464)
398 3d45_A Poly(A)-specific ribonu 95.4 0.073 2.5E-06 43.2 8.5 67 16-91 434-500 (507)
399 1wey_A Calcipressin 1; structu 95.0 0.084 2.9E-06 33.4 6.0 67 22-94 5-82 (104)
400 3p3d_A Nucleoporin 53; structu 93.4 0.085 2.9E-06 34.8 3.8 76 85-165 5-94 (132)
401 3d45_A Poly(A)-specific ribonu 91.5 0.73 2.5E-05 37.4 7.8 54 89-151 442-495 (507)
402 3p3d_A Nucleoporin 53; structu 88.7 0.41 1.4E-05 31.6 3.4 84 22-108 7-105 (132)
403 3lpe_A Putative transcription 70.1 10 0.00034 23.0 4.8 43 63-109 49-91 (92)
404 3eye_A PTS system N-acetylgala 54.7 37 0.0013 23.1 5.8 35 64-98 81-115 (168)
405 1nz8_A Transcription antitermi 52.1 14 0.00048 23.4 3.3 48 63-111 61-115 (119)
406 2g0c_A ATP-dependent RNA helic 51.0 7.4 0.00025 22.4 1.6 34 131-168 42-75 (76)
407 3p3v_A PTS system, N-acetylgal 50.7 37 0.0013 23.0 5.3 36 63-98 77-112 (163)
408 3lfj_A Manxb, phosphotransfera 47.4 43 0.0015 23.2 5.3 56 64-119 97-166 (187)
409 1vsq_C Mannose-specific phosph 42.3 62 0.0021 21.9 5.4 36 63-98 78-113 (165)
410 3fut_A Dimethyladenosine trans 39.5 26 0.00089 25.7 3.4 36 22-58 110-145 (271)
411 3uzu_A Ribosomal RNA small sub 38.7 13 0.00046 27.4 1.7 36 23-58 115-150 (279)
412 1nrz_A PTS system, sorbose-spe 38.5 64 0.0022 21.8 5.0 36 63-98 75-110 (164)
413 1ble_A Fructose permease; phos 33.5 63 0.0021 21.8 4.3 35 63-97 76-110 (163)
414 3tqs_A Ribosomal RNA small sub 31.9 17 0.00058 26.4 1.3 34 25-58 99-132 (255)
415 2bpa_3 Protein (subunit of bac 31.4 28 0.00097 16.5 1.6 28 2-29 7-34 (37)
416 2op5_A Hypothetical protein; f 28.9 96 0.0033 18.5 5.2 71 66-150 13-84 (117)
417 2lfv_A Protein DAMX; cell divi 33.7 13 0.00044 23.3 0.0 49 101-151 36-86 (106)
418 1qyr_A KSGA, high level kasuga 27.6 46 0.0016 24.0 3.0 34 24-57 92-125 (252)
419 2xhc_A Transcription antitermi 26.3 1.5E+02 0.0052 22.6 5.8 51 61-112 230-282 (352)
420 3ts2_A Protein LIN-28 homolog 25.1 16 0.00055 24.3 0.1 28 102-137 2-29 (148)
421 1i4w_A Mitochondrial replicati 24.8 39 0.0013 25.9 2.3 22 24-45 144-165 (353)
422 3ftd_A Dimethyladenosine trans 24.1 47 0.0016 23.8 2.5 35 24-58 97-131 (249)
423 2d8m_A DNA-repair protein XRCC 22.9 1E+02 0.0034 19.5 3.7 35 14-49 17-51 (129)
424 4e8u_A Putative uncharacterize 22.7 1.9E+02 0.0064 19.7 5.1 56 89-147 14-81 (172)
425 2i9x_A Putative septation prot 22.2 1.1E+02 0.0039 18.3 3.5 26 48-73 5-30 (87)
426 2oug_A Transcriptional activat 21.0 71 0.0024 21.1 2.8 50 62-112 50-101 (162)
427 1m1h_A Transcription antitermi 20.8 2.1E+02 0.0071 20.7 5.4 51 61-112 133-185 (248)
428 3h7h_B Transcription elongatio 20.6 78 0.0027 19.7 2.7 24 63-86 50-73 (106)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-36 Score=221.52 Aligned_cols=150 Identities=33% Similarity=0.493 Sum_probs=135.6
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------- 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------- 87 (170)
+.....+.++|||+|||+++|+++|+++|+.||.|.+|++++++.++.++|||||+|.+.++|.+|+..+++.
T Consensus 8 p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 8 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp -------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 3444456789999999999999999999999999999999999989999999999999999999999988763
Q ss_pred ----------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 88 ----------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 88 ----------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
.+|||+|||+.+++++|+++|+.||.|..+.+++|. +.++|||||+|.+.++|.+|++.|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 88 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp EEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999885 45799999999999999999999999
Q ss_pred CCccccCCeeEEEEeecc
Q psy7847 152 FPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 152 ~~~~~~~~~~i~v~~~~~ 169 (170)
..++|++|+|.++.+
T Consensus 166 ---~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 166 ---MLLNDRKVFVGRFKS 180 (213)
T ss_dssp ---CEETTEECEEEECCC
T ss_pred ---CEECCEEEEEEEcCC
Confidence 999999999999864
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-35 Score=205.54 Aligned_cols=143 Identities=31% Similarity=0.512 Sum_probs=135.0
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------------
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------------- 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------------- 87 (170)
++|||+|||+++++++|+++|+.||.|.++.+++++ ++.++|+|||+|.+.++|.+|+..+++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 6789999999999999999999887763
Q ss_pred --------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 88 --------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 88 --------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
.+|+|+|||+.+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..||| ..++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g 156 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG---QDLNG 156 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT---CEETT
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC---CccCC
Confidence 4899999999999999999999999999999999988899999999999999999999999999 99999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
++|+|+||.+
T Consensus 157 ~~i~v~~a~~ 166 (166)
T 3md3_A 157 RPLRINWAAK 166 (166)
T ss_dssp EECEEEESCC
T ss_pred cEEEEEecCC
Confidence 9999999874
No 3
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.6e-35 Score=207.39 Aligned_cols=145 Identities=27% Similarity=0.499 Sum_probs=136.6
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH---cCC-----------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE---MND----------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~---~~~----------- 86 (170)
++++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+.. +++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 468999999999999999999999999999999999988899999999999999999999986 333
Q ss_pred -----CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 87 -----DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 87 -----~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
..+|||+|||+.+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++ +|+ ..++|++
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~---~~~~g~~ 157 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF---IDFKDRK 157 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE---ECSSSSC
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC---EEeCCeE
Confidence 3599999999999999999999999999999999998889999999999999999999998 888 9999999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|.++.+
T Consensus 158 i~V~~a~p 165 (167)
T 2cjk_A 158 IEIKRAEP 165 (167)
T ss_dssp EEEEECCC
T ss_pred EEEeecCC
Confidence 99999976
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-34 Score=203.69 Aligned_cols=144 Identities=26% Similarity=0.410 Sum_probs=136.4
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
++++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999999889999999999999999999999987752
Q ss_pred --------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 88 --------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 88 --------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
.+|+|+|||..+++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.||| ..+.|
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g 158 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN---VIPEG 158 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CCCTT
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC---CEecC
Confidence 5999999999999999999999999999999999988899999999999999999999999999 88866
Q ss_pred --eeEEEEee
Q psy7847 160 --LKTRSSIT 167 (170)
Q Consensus 160 --~~i~v~~~ 167 (170)
++|+|+||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999986
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.7e-34 Score=204.28 Aligned_cols=147 Identities=20% Similarity=0.342 Sum_probs=133.2
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCC--CcCCEEEEEeCCHHHHHHHHHHcCCC-----------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN--KTKGFGFVSFKDPQDFIRANKEMNDD----------- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~--~~~~~afv~f~~~~~a~~~~~~~~~~----------- 87 (170)
++++|||+|||+++++++|+++|+.||.|.++++++++.++ .++|||||+|.+.++|.+|++.+++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998776 89999999999999999999987752
Q ss_pred --------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCC
Q psy7847 88 --------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP 153 (170)
Q Consensus 88 --------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 153 (170)
.+|||+|||+.+++++|+++|++||.|..+.+.+++ ++.++|+|||+|.+.++|.+|++.|||..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 489999999999999999999999999999999986 58899999999999999999999999932
Q ss_pred ccccCCeeEEEEeec
Q psy7847 154 HLFVGDLKTRSSITL 168 (170)
Q Consensus 154 ~~~~~~~~i~v~~~~ 168 (170)
....++++|+|+||+
T Consensus 161 ~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 161 TMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCSSCCEEEECC
T ss_pred ccCCCCCCeEEEecC
Confidence 222225999999985
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.4e-34 Score=208.54 Aligned_cols=151 Identities=25% Similarity=0.410 Sum_probs=137.7
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC--------
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND-------- 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~-------- 86 (170)
+..++.+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+...+.
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~ 85 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVE 85 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEee
Confidence 444566788999999999999999999999999999999999988899999999999999999999976221
Q ss_pred ------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy7847 87 ------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148 (170)
Q Consensus 87 ------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 148 (170)
..+|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 165 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh
Confidence 25899999999999999999999999999999999988899999999999999999999986
Q ss_pred hcCCCccccCCeeEEEEeecc
Q psy7847 149 MNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 149 l~~~~~~~~~~~~i~v~~~~~ 169 (170)
++ ..++|+.|+|+++.+
T Consensus 166 -~~---~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 166 -KY---HTVNGHNCEVRKALS 182 (196)
T ss_dssp -SC---CEETTEECEEEECC-
T ss_pred -CC---cEECCEEEEEEecCC
Confidence 78 999999999999875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.7e-35 Score=214.46 Aligned_cols=148 Identities=23% Similarity=0.385 Sum_probs=137.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-----------
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----------- 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----------- 87 (170)
....++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 345689999999999999999999999999999999999888999999999999999999999977752
Q ss_pred ---------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy7847 88 ---------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146 (170)
Q Consensus 88 ---------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 146 (170)
.+|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|+|||+|.+.++|.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 49999999999999999999999999999999999888999999999999999999999
Q ss_pred HHhcCCCccccCCeeEEEEeecc
Q psy7847 147 KEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 147 ~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
+.||| ..++|+.|+|+++..
T Consensus 185 ~~l~g---~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 185 SSMNL---FDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHTT---CBCSSSBCEEEECSS
T ss_pred HHccC---CEeCCcEEEEEEecC
Confidence 99999 999999999999864
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.1e-34 Score=201.44 Aligned_cols=143 Identities=25% Similarity=0.392 Sum_probs=134.9
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--------------
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-------------- 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-------------- 87 (170)
+++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|+|||+|.+.++|.+|++.+++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 578999999999999999999999999999999999889999999999999999999999987762
Q ss_pred -------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 88 -------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 88 -------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
.+|+|+|||+.+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++.||| ..++|+
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~ 158 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPSGA 158 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CCCTTC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC---CccCCC
Confidence 4899999999999999999999999999999999988899999999999999999999999999 889885
Q ss_pred --eEEEEee
Q psy7847 161 --KTRSSIT 167 (170)
Q Consensus 161 --~i~v~~~ 167 (170)
+|+|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 4888886
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=1.3e-31 Score=189.17 Aligned_cols=138 Identities=22% Similarity=0.379 Sum_probs=126.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC--
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKY----P-------SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD-- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~-- 87 (170)
++++|||+|||+++++++|+++|+.| | .+.++.+. .++|||||+|.+.++|.+|+ .+++.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 66666654 34799999999999999999 77652
Q ss_pred -------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q psy7847 88 -------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148 (170)
Q Consensus 88 -------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 148 (170)
.+|+|+|||+.+++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred cCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999988899999999999999999999999
Q ss_pred hcCCCccccCCeeEEEEeec
Q psy7847 149 MNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 149 l~~~~~~~~~~~~i~v~~~~ 168 (170)
||| ..++|++|+|+||.
T Consensus 156 l~g---~~~~g~~l~V~~As 172 (172)
T 2g4b_A 156 LNG---MQLGDKKLLVQRAS 172 (172)
T ss_dssp HTT---CEETTEECEEEECC
T ss_pred cCC---CEECCeEEEEEeCC
Confidence 999 99999999999974
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=6.3e-31 Score=199.76 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=137.0
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
..++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|.+|+..+++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4678999999999999999999999999999999999889999999999999999999999888762
Q ss_pred -----------ceEEecCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcc
Q psy7847 88 -----------FRLFCGDLGNDV-TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155 (170)
Q Consensus 88 -----------~~l~v~nlp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 155 (170)
.+|||+|||+.+ ++++|+++|+.||.|..+.+.+++ ++.++|+|||+|.+.++|.+|+..||| .
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g---~ 249 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG---L 249 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT---C
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC---C
Confidence 489999999995 999999999999999999999887 788999999999999999999999999 9
Q ss_pred ccCCeeEEEEeecc
Q psy7847 156 FVGDLKTRSSITLK 169 (170)
Q Consensus 156 ~~~~~~i~v~~~~~ 169 (170)
.++|++|+|+|+.+
T Consensus 250 ~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 250 SLGGSHLRVSFCAP 263 (284)
T ss_dssp EETTEECEEEECCS
T ss_pred ccCCeEEEEEEecC
Confidence 99999999999875
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6.2e-32 Score=191.59 Aligned_cols=144 Identities=22% Similarity=0.301 Sum_probs=127.2
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---------
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--------- 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--------- 86 (170)
..++.+.++|||+|||.++++++|+++|..||.+..+ ++.+..+|.++|||||+|.+.++|.+|++ +++
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 4456678999999999999999999999999977663 33444578899999999999999999994 664
Q ss_pred --------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCC
Q psy7847 87 --------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 87 --------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 152 (170)
..+|||+|||+.+++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|+..|||
T Consensus 85 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g- 158 (175)
T 1fje_B 85 LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG- 158 (175)
T ss_dssp EECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE-
T ss_pred EecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC-
Confidence 2599999999999999999999999988766 34688899999999999999999999999
Q ss_pred CccccCCeeEEEEeecc
Q psy7847 153 PHLFVGDLKTRSSITLK 169 (170)
Q Consensus 153 ~~~~~~~~~i~v~~~~~ 169 (170)
..++|++|+|+|+.+
T Consensus 159 --~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 159 --AEIDGRSVSLYYTGE 173 (175)
T ss_dssp --EEETTEEEEEEECSS
T ss_pred --CEECCeEEEEEecCC
Confidence 999999999999875
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.4e-30 Score=195.73 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=130.9
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
.++++|||+|||+++++++|+++|+.|| +.++.+ +.++|||||+|.+.++|.+|+..+++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4578999999999999999999999999 888887 45678999999999999999998876
Q ss_pred --CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 87 --DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 87 --~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..+|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|.+|+..||| ..++|++|+|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~---~~~~g~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG---KPLGPRTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC---CEeCCcEEEE
Confidence 35899999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 170 ~~a~~ 174 (284)
T 3smz_A 170 HWTDA 174 (284)
T ss_dssp EECCG
T ss_pred EECCC
Confidence 99864
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1e-29 Score=191.40 Aligned_cols=144 Identities=27% Similarity=0.355 Sum_probs=128.7
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC---------
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD--------- 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~--------- 87 (170)
....+.++|||+|||+++|+++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+..+++.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 33456689999999999999999999999999999999654 589999999999999999988763
Q ss_pred ------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC---
Q psy7847 88 ------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG--- 158 (170)
Q Consensus 88 ------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~--- 158 (170)
.+|||+|||+.+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..||+. ..+.
T Consensus 91 ~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~--~~~~~~~ 167 (261)
T 3sde_A 91 RFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDG--AFLLTTT 167 (261)
T ss_dssp EECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHS--CEESSSS
T ss_pred eecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCC--eEEecCC
Confidence 599999999999999999999999999999999995 8899999999999999999999999441 4444
Q ss_pred CeeEEEEeecc
Q psy7847 159 DLKTRSSITLK 169 (170)
Q Consensus 159 ~~~i~v~~~~~ 169 (170)
+++|.|.++..
T Consensus 168 ~r~i~v~~~~~ 178 (261)
T 3sde_A 168 PRPVIVEPMEQ 178 (261)
T ss_dssp CCBCEEEECCC
T ss_pred CceEEEeeccc
Confidence 89999998753
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.2e-29 Score=192.46 Aligned_cols=141 Identities=21% Similarity=0.373 Sum_probs=128.1
Q ss_pred CCCCCcEEEEcCCCCCccHHHHH----HHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------ 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------ 87 (170)
+..++++|||+|||.++++++|+ ++|+.||.|.+|++++ +|.++|||||+|.+.++|.+|++.+++.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45568899999999999999977 8999999999999875 6789999999999999999999876641
Q ss_pred --------------------------------------------------------------------------------
Q psy7847 88 -------------------------------------------------------------------------------- 87 (170)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (170)
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence
Q ss_pred ----------------------------------------------ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEee
Q psy7847 88 ----------------------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVR 121 (170)
Q Consensus 88 ----------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~ 121 (170)
.+|||+|||..+++++|+++|+.||.|..+.+..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 3499999999999999999999999999999986
Q ss_pred cCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC-CeeEEEEeecc
Q psy7847 122 DKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG-DLKTRSSITLK 169 (170)
Q Consensus 122 ~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-~~~i~v~~~~~ 169 (170)
++ +|+|||+|.+.++|.+|++.||| ..++ |++|+|+|+.+
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g---~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQG---FKITQNNAMKISFAKK 282 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCC---cEeCCCCEEEEEEecC
Confidence 64 68999999999999999999999 8888 99999999864
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=6.2e-30 Score=184.39 Aligned_cols=139 Identities=22% Similarity=0.387 Sum_probs=125.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKY----P-------SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--- 86 (170)
.+++|||+|||+++++++|+++|+.| | .+.++.+ +.++|||||+|.+.++|.+|+ .+++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 455799999999999999999 6654
Q ss_pred --------------------------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCc
Q psy7847 87 --------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 128 (170)
Q Consensus 87 --------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~ 128 (170)
..+|||+|||+.+++++|+++|++||.|..+.+.+++.++.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 259999999999999999999999999999999999888999
Q ss_pred ccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 129 KGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 129 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
+|+|||+|.+.++|.+|++.||| ..++|+.|+|+++.+
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNG---MQLGDKKLLVQRASV 193 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTT---CEETTEECEEEESCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEEECCC
Confidence 99999999999999999999999 999999999999875
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.3e-30 Score=195.36 Aligned_cols=147 Identities=10% Similarity=0.150 Sum_probs=124.8
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---------
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--------- 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--------- 86 (170)
...+...++|||+|||+++++++|+++|+.||.|.++++++++ .+ ++|||||+|.+.++|.+|++ +++
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL-KK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT-TS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 3345567899999999999999999999999999999999986 33 57999999999999999995 664
Q ss_pred -----CceEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 87 -----DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 87 -----~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
..+|||+|||+.+++++|+++|+.|| .|..+.+++++. +.++|||||+|.+.++|.+|+..||| ..++|+
T Consensus 112 v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~ 187 (292)
T 2ghp_A 112 VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNG---LKIEGY 187 (292)
T ss_dssp EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTT---CEETTE
T ss_pred EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCC---CEeCCc
Confidence 36999999999999999999999999 999999988874 77899999999999999999999999 999999
Q ss_pred eEEEEeecc
Q psy7847 161 KTRSSITLK 169 (170)
Q Consensus 161 ~i~v~~~~~ 169 (170)
+|+|.++.+
T Consensus 188 ~l~v~~a~~ 196 (292)
T 2ghp_A 188 TLVTKVSNP 196 (292)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.6e-29 Score=186.95 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=127.2
Q ss_pred CCCCCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC---------
Q psy7847 17 CEDENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND--------- 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~--------- 86 (170)
....++++|||+|||+ ++++++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|++.+++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3345678999999999 99999999999999999999998875 68999999999999999986654
Q ss_pred -----------------------------------------------CceEEecCCCCCCCHHHHHHHhccCC-CeeEEE
Q psy7847 87 -----------------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAK 118 (170)
Q Consensus 87 -----------------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~ 118 (170)
..+|||+|||+.+++++|+++|+.|| .|..+.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 14699999999999999999999999 999998
Q ss_pred EeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC-CeeEEEEeeccC
Q psy7847 119 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG-DLKTRSSITLKG 170 (170)
Q Consensus 119 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-~~~i~v~~~~~~ 170 (170)
+..+ .+|+|||+|.+.++|.+|++.||| ..++ |++|+|+|+.+.
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g---~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHN---HDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTT---CBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCC---CccCCCCeEEEEEecCC
Confidence 8653 278999999999999999999999 8888 999999998763
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.2e-30 Score=194.64 Aligned_cols=144 Identities=15% Similarity=0.262 Sum_probs=128.0
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
..++|||+|||+++++++|+++|+.|| .|.++.++.++ .|.++|||||+|.+.++|.+|+..+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999886 4889999999999999999999977752
Q ss_pred ----------------ceEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHh
Q psy7847 88 ----------------FRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSFKDPQDFIRANKEM 149 (170)
Q Consensus 88 ----------------~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l 149 (170)
.+|||+|||+. +++++|+++|+.||.|..+.+.++.. ++.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 58999999999 99999999999999999999998874 4889999999999999999999 99
Q ss_pred cCCCccccCCeeEEEEeecc
Q psy7847 150 NEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 150 ~~~~~~~~~~~~i~v~~~~~ 169 (170)
|| ..++|++|+|+|+.+
T Consensus 274 ~g---~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 274 NR---SLLGNREISVSLADK 290 (292)
T ss_dssp TT---EEETTEEEEEEECCC
T ss_pred cC---CEECCcEEEEEEecC
Confidence 99 999999999999976
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.9e-29 Score=182.19 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=124.6
Q ss_pred CCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC-------------
Q psy7847 21 NDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND------------- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~------------- 86 (170)
.+++|||+|||+ ++++++|+++|+.||.|.++++++++ +|||||+|.+.++|.+|+..+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 68999999999999999986654
Q ss_pred -------------------------------------------CceEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeec
Q psy7847 87 -------------------------------------------DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRD 122 (170)
Q Consensus 87 -------------------------------------------~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~ 122 (170)
..+|+|+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 23599999999999999999999999 9999998664
Q ss_pred CCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC-CeeEEEEeeccC
Q psy7847 123 KRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG-DLKTRSSITLKG 170 (170)
Q Consensus 123 ~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~-~~~i~v~~~~~~ 170 (170)
. +|+|||+|.+.++|.+|+..||| ..++ |++|+|+|+.+.
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g---~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHN---HDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTS---SCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcC---CccCCCCeEEEEeeccc
Confidence 3 78999999999999999999999 8888 999999999763
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.1e-28 Score=179.71 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=120.1
Q ss_pred CCcEEEEcCCC-CCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------------
Q psy7847 21 NDFRLFCGDLG-NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------ 87 (170)
Q Consensus 21 ~~~~v~v~nLp-~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------ 87 (170)
++.+|||+||| .++++++|+++|+.||.|.+++++++ ++|||||+|.+.++|..|++.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999865 3699999999999999999877541
Q ss_pred ----------------------------------------------ceEEecCCCCCCCHHHHHHHhccCCCe--eEEEE
Q psy7847 88 ----------------------------------------------FRLFCGDLGNDVTDELLIRTFSKYPSF--LKAKV 119 (170)
Q Consensus 88 ----------------------------------------------~~l~v~nlp~~~~~~~l~~~f~~~g~i--~~~~~ 119 (170)
.+|||+|||+.+++++|+++|++||.| ..+.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 159999999999999999999999998 88888
Q ss_pred eecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe----eEEEEee
Q psy7847 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL----KTRSSIT 167 (170)
Q Consensus 120 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~----~i~v~~~ 167 (170)
..+. +.++|+|||+|.+.++|.+|+..||| ..++++ ++.|.++
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng---~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNH---YQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTT---CEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCC---CCccCCCCCcceEEEec
Confidence 7764 45579999999999999999999999 777775 5555543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=4.8e-24 Score=148.98 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=103.4
Q ss_pred EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----------------------------------CceEEecCCC
Q psy7847 51 KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----------------------------------DFRLFCGDLG 96 (170)
Q Consensus 51 ~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----------------------------------~~~l~v~nlp 96 (170)
.+.++.+. ..++|||||+|.+.++|++++..+++ ..+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666664 36899999999999999999976541 3699999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 97 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
+++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.++.+
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG---AVLDGRELRVQMARY 149 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT---EESSSSEEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC---CEECCeEEEEEECCC
Confidence 9999999999999999999999999988899999999999999999999999999 999999999999875
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=129.54 Aligned_cols=82 Identities=26% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+++++++|+++|++||.|..+.+.+|+.++.++|||||+|.+.++|.+|++.||| ..++|++|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng---~~~~gr~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG---LRLQSKTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 356899999999999999999999999999999999998999999999999999999999999999 99999999999
Q ss_pred eeccC
Q psy7847 166 ITLKG 170 (170)
Q Consensus 166 ~~~~~ 170 (170)
||.++
T Consensus 95 ~AkPS 99 (99)
T 4fxv_A 95 YARPS 99 (99)
T ss_dssp ECCBC
T ss_pred EeeCC
Confidence 99874
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=123.52 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=77.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+++|+.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng---~~~~gr~i~V~ 81 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL---TSVMGNIIHAQ 81 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC---CEECCeEEEEE
Confidence 357999999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 9865
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=123.10 Aligned_cols=82 Identities=15% Similarity=0.286 Sum_probs=74.9
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCC--eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCC-ccccCCeeEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFP-HLFVGDLKTRS 164 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~~i~v 164 (170)
.+|||+|||+.+|+++|+++|++||. +..+++++|+.++.++|||||+|.+.++|.+|++.|||.+ ...++|++|+|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 48999999999999999999999995 6689999999899999999999999999999999999942 23689999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
+||..
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99975
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-21 Score=122.79 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=74.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.+|||+|||+++++++|+++|++|| .|..+.+++|+.++.++|||||+|.+.++|.+|++.+++ ...++|++|+|+|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~--~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH--SLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT--EEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC--CeEECCEEEEEEE
Confidence 5899999999999999999999999 799999999998999999999999999999999998744 1789999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 80 a~~ 82 (91)
T 2lxi_A 80 SDP 82 (91)
T ss_dssp CCS
T ss_pred cCC
Confidence 875
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=7e-20 Score=114.34 Aligned_cols=79 Identities=35% Similarity=0.578 Sum_probs=76.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.||| ..++|++|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g---~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG---QDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT---CEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC---CeeCCcEEEEEec
Confidence 5899999999999999999999999999999999988899999999999999999999999999 9999999999998
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 79 ~~ 80 (83)
T 3md1_A 79 AK 80 (83)
T ss_dssp CC
T ss_pred Cc
Confidence 75
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=115.19 Aligned_cols=81 Identities=31% Similarity=0.561 Sum_probs=76.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG---QWLGGRQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 9975
No 28
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=4.1e-20 Score=128.00 Aligned_cols=100 Identities=27% Similarity=0.400 Sum_probs=92.0
Q ss_pred CcCCEEEEEeCCHHHHHHHHHHc-C------------------------------------CCceEEecCCCCCCCHHHH
Q psy7847 62 KTKGFGFVSFKDPQDFIRANKEM-N------------------------------------DDFRLFCGDLGNDVTDELL 104 (170)
Q Consensus 62 ~~~~~afv~f~~~~~a~~~~~~~-~------------------------------------~~~~l~v~nlp~~~~~~~l 104 (170)
.-+|+++++|.+.++|+++++.+ + ..++|||+|||+.+++++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 56899999999999999999777 1 2369999999999999999
Q ss_pred HHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 105 IRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 105 ~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
+++|++||.|..+.+.++ ++|||||+|.+.++|.+|+..||| ..++|++|+|+++.+
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDG---RTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSS---SCSSSSCCEEEECCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEEEcCC
Confidence 999999999999999876 489999999999999999999999 999999999999875
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=116.12 Aligned_cols=82 Identities=26% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 90 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG---MELDGRRIRVS 90 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT---EEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 357999999999999999999999999999999999988889999999999999999999999999 99999999999
Q ss_pred eeccC
Q psy7847 166 ITLKG 170 (170)
Q Consensus 166 ~~~~~ 170 (170)
++..+
T Consensus 91 ~a~~g 95 (95)
T 2cqc_A 91 GPSSG 95 (95)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 99764
No 30
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=8.8e-20 Score=114.39 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE---SELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC---CEECCcEEEE
Confidence 3467999999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
+++.
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9973
No 31
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.5e-20 Score=118.34 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=72.2
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
.+|||+|||+++++++|+++|++|| .|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g---~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK---RELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG---SCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC---CeeCCEEEEEE
Confidence 4799999999999999999999999 999999999988999999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 79 ~~~~ 82 (90)
T 3p5t_L 79 PSNK 82 (90)
T ss_dssp CC--
T ss_pred ECCC
Confidence 9864
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=114.45 Aligned_cols=81 Identities=22% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG---FELAGRPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT---CCSSSSCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC---CeeCCcEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 81 ~a~~ 84 (95)
T 2dnz_A 81 HVTE 84 (95)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 9865
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=6.4e-20 Score=121.67 Aligned_cols=80 Identities=30% Similarity=0.504 Sum_probs=59.3
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-------------
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------------- 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------------- 87 (170)
.+.+|||+|||+++++++|+++|+.||.|.++++++++ +.++|||||+|.+.++|.+|++.+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999985 458999999999999999999988863
Q ss_pred ----------------ceEEecCCCCCCCHH
Q psy7847 88 ----------------FRLFCGDLGNDVTDE 102 (170)
Q Consensus 88 ----------------~~l~v~nlp~~~~~~ 102 (170)
.+|||+|||+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC---------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCcccc
Confidence 268888888888776
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.9e-19 Score=115.58 Aligned_cols=80 Identities=20% Similarity=0.369 Sum_probs=76.5
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG---YQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT---CEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEEE
Confidence 46899999999999999999999999999999999988899999999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 79 a~~ 81 (96)
T 2x1f_A 79 SSN 81 (96)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=2.4e-20 Score=127.18 Aligned_cols=102 Identities=21% Similarity=0.212 Sum_probs=76.1
Q ss_pred CEEEEEeCCHHHHHHHHHHcCC--------------------CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCC
Q psy7847 65 GFGFVSFKDPQDFIRANKEMND--------------------DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124 (170)
Q Consensus 65 ~~afv~f~~~~~a~~~~~~~~~--------------------~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 124 (170)
.++|..+.+...+..|+..+++ .++|||+|||+.+++++|+++|+.||.|..+.+..++.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 3567777777778888877664 25899999999999999999999999999999999888
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 125 TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 125 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
++.++|||||+|.+.++|.+|++.||| ..++|++|+|.|+.+
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g---~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDG---AVLDGRELRVQMARY 126 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTT---CCSSSSCCEEEECCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEEECCC
Confidence 899999999999999999999999999 999999999999875
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.6e-19 Score=119.73 Aligned_cols=78 Identities=31% Similarity=0.474 Sum_probs=72.9
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+++++++|+++|++||.|..+.++++. +.++|||||+|.+.++|.+|++.||| ..++|++|+|.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~---~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG---MLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTT---CEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCC---CEECCEEEEEEE
Confidence 4689999999999999999999999999999999985 45799999999999999999999999 999999999998
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 80 a~~ 82 (115)
T 4f25_A 80 FKS 82 (115)
T ss_dssp SSC
T ss_pred CCC
Confidence 754
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=114.00 Aligned_cols=80 Identities=26% Similarity=0.423 Sum_probs=76.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.||+ ..++|++|+|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 91 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN---KQLFGRVIKAS 91 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT---EEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC---CeeCCcEEEEE
Confidence 457999999999999999999999999999999999988889999999999999999999999999 99999999999
Q ss_pred eec
Q psy7847 166 ITL 168 (170)
Q Consensus 166 ~~~ 168 (170)
|+.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=4.6e-20 Score=119.43 Aligned_cols=80 Identities=21% Similarity=0.131 Sum_probs=76.1
Q ss_pred CceEEecCCCC------CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC-
Q psy7847 87 DFRLFCGDLGN------DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD- 159 (170)
Q Consensus 87 ~~~l~v~nlp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~- 159 (170)
.++|||+|||+ .+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||| ..++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng---~~~~g~ 82 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG---KRLDLK 82 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT---CBSSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC---cccCCC
Confidence 46899999999 999999999999999999999999998899999999999999999999999999 99998
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
++|+|+++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999864
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=116.40 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=77.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|+..||| ..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 90 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG---FGYDHLILNVE 90 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC---CeeCCcEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9875
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=114.90 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 83 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG---QVFQGRMLHVL 83 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT---EESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 84 ~a~~ 87 (99)
T 1whw_A 84 PSTI 87 (99)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9865
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=114.81 Aligned_cols=80 Identities=25% Similarity=0.266 Sum_probs=76.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--------AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 157 (170)
...+|||+|||+.+++++|+++|++||.|.. +.+..++.++.++|||||+|.+.++|.+|++.||| ..+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g---~~~ 88 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG---KEF 88 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT---CBS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC---CEe
Confidence 3579999999999999999999999999999 99999988899999999999999999999999999 999
Q ss_pred CCeeEEEEeec
Q psy7847 158 GDLKTRSSITL 168 (170)
Q Consensus 158 ~~~~i~v~~~~ 168 (170)
+|+.|+|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 42
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=114.19 Aligned_cols=82 Identities=28% Similarity=0.395 Sum_probs=77.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|+.++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA---SGVQAQMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH---HTCCEESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC---CeEeeEEEeec
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eeccC
Q psy7847 166 ITLKG 170 (170)
Q Consensus 166 ~~~~~ 170 (170)
++.++
T Consensus 81 ~~~sg 85 (85)
T 1x4e_A 81 GPSSG 85 (85)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=113.85 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=75.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ ||+ ..++|++|+|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~---~~~~g~~l~V~ 84 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF---HDIMGKKVEVK 84 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC---CBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC---CEECCeEEEEE
Confidence 35799999999999999999999999999999999998889999999999999999999999 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=113.85 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=76.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..++ ++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 91 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG---MTIKENIIKVA 91 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT---EESSSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 35799999999999999999999999999999999988 889999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 92 ~a~~ 95 (100)
T 2do4_A 92 ISNS 95 (100)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=116.85 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|+
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g---~~i~g~~l~V~ 101 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG---FELAGRPMKVG 101 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT---CCSSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 102 ~a~~ 105 (108)
T 2jrs_A 102 HVTE 105 (108)
T ss_dssp CSCS
T ss_pred Eccc
Confidence 9875
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=115.99 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..||| ..++|+.|+|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG---QDLMGQPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT---CBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC---CEECCcEEEEE
Confidence 357899999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9865
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=115.40 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=76.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..++|||+|||+.+++++|+++|++||.|..+ .+++++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG---QYLCNRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT---CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC---CEECCEEEEE
Confidence 45799999999999999999999999999999 9999988899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 81 ~~a~~ 85 (96)
T 1x5t_A 81 SYAFK 85 (96)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 99865
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=5.2e-19 Score=117.06 Aligned_cols=81 Identities=32% Similarity=0.566 Sum_probs=77.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 90 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG---QWLGGRQIRTN 90 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT---CEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 91 ~a~~ 94 (115)
T 2dgo_A 91 WATR 94 (115)
T ss_dssp ESSC
T ss_pred EccC
Confidence 9864
No 49
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=115.89 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE---SELFGRTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT---EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 88 ~a~~ 91 (102)
T 2cqb_A 88 LAKP 91 (102)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9865
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=113.65 Aligned_cols=82 Identities=28% Similarity=0.423 Sum_probs=76.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|++||.|..+.+.+++. +.++|||||+|.+.++|.+|++.||+ ..++|++|+|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V 89 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNG---IRLYGRPINV 89 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCC---CEECCCEEEE
Confidence 3457999999999999999999999999999999999884 88999999999999999999999999 9999999999
Q ss_pred EeeccC
Q psy7847 165 SITLKG 170 (170)
Q Consensus 165 ~~~~~~ 170 (170)
.++..+
T Consensus 90 ~~a~~G 95 (95)
T 2ywk_A 90 SGPSSG 95 (95)
T ss_dssp ECCCCC
T ss_pred EEcCCC
Confidence 998764
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=115.83 Aligned_cols=81 Identities=35% Similarity=0.515 Sum_probs=77.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG---KSVDGRQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT---CCTTSCCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC---CEECCeEEEEE
Confidence 457999999999999999999999999999999999988889999999999999999999999999 89999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 88 ~a~~ 91 (102)
T 1x5s_A 88 QAGK 91 (102)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 9875
No 52
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-19 Score=115.89 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 90 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM---IKLYGKPIRVN 90 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS---CBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 91 ~a~~ 94 (105)
T 1x5u_A 91 KASA 94 (105)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9865
No 53
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=115.99 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=77.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG---AELDGRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS---CCBTTBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC---CEECCcEEEE
Confidence 3457999999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++..
T Consensus 88 ~~a~~ 92 (103)
T 2dnm_A 88 QVARY 92 (103)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 99864
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=115.56 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc------CCCccccCC
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN------EFPHLFVGD 159 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~~~~~ 159 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..|| + ..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~---~~~~g 90 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG---LKLDG 90 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC---EESSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC---cEEcC
Confidence 45799999999999999999999999999999999998889999999999999999999999999 9 99999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
++|+|.++.+
T Consensus 91 ~~l~v~~a~~ 100 (111)
T 1x4h_A 91 RQLKVDLAVT 100 (111)
T ss_dssp CEEEEECCCC
T ss_pred EEEEEEECCC
Confidence 9999999865
No 55
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=4.4e-19 Score=117.45 Aligned_cols=81 Identities=30% Similarity=0.449 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 100 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG---FQIGMKRLKVQ 100 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC---CEECCEEEEEE
Confidence 347999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 101 ~a~~ 104 (115)
T 2cpz_A 101 LKRS 104 (115)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9865
No 56
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2e-19 Score=115.05 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g---~~~~gr~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND---RPIGSRKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC---CeECCcEEEEE
Confidence 457999999999999999999999999999888888888889999999999999999999999999 99999999999
Q ss_pred eeccC
Q psy7847 166 ITLKG 170 (170)
Q Consensus 166 ~~~~~ 170 (170)
++..+
T Consensus 91 ~a~sg 95 (95)
T 2ek1_A 91 GPSSG 95 (95)
T ss_dssp CCC--
T ss_pred eccCC
Confidence 98764
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=114.92 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee---
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK--- 161 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~--- 161 (170)
...+|||+|||+.+++++|+++|++||.|. .+.+++++.++.++|||||+|.+.++|.+|++.||| ..++|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING---KPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT---SEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC---CccCCCCcce
Confidence 357999999999999999999999999999 999999988899999999999999999999999999 9999999
Q ss_pred -EEEEeecc
Q psy7847 162 -TRSSITLK 169 (170)
Q Consensus 162 -i~v~~~~~ 169 (170)
|+|+|+..
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999875
No 58
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=7e-19 Score=115.56 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=77.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG---AEIMGQTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC---CEECCcEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 102 ~a~~ 105 (110)
T 1oo0_B 102 WCFV 105 (110)
T ss_dssp ESEE
T ss_pred Eccc
Confidence 9864
No 59
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.9e-19 Score=110.29 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=71.6
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+|||+|||+++++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++ +|+ ..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~---~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF---HEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC---CCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC---CEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 899 9999999999886
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=111.50 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=74.7
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK-TKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..+|||+|||+++++++|+++|++||.|..+.+..++.++. ++|+|||+|.+.++|.+|++.||| ..++|+.|+|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 80 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG---GQIDGQEITAT 80 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC---CeECCeEEEEE
Confidence 46899999999999999999999999999999998876555 899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 81 ~a~~ 84 (88)
T 4a8x_A 81 AVLA 84 (88)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9865
No 61
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=1.2e-18 Score=113.78 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=76.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|||+.+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG---VPLDGRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC---CEeCCcEEEE
Confidence 456899999999999999999999999999999999998 899999999999999999999999999 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=6.8e-19 Score=111.21 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=75.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+.+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+ .||| ..++|++|+|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g---~~~~g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE---SLFRGRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT---CEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC---CEECCcEEEEEE
Confidence 368999999999999999999999999999999999888999999999999999999999 8999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 864
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=114.45 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=76.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-cCCCccccCCeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD-KRTNKTKGFGFVSFKDPQDFIRANKEM-NEFPHLFVGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~~~~i~ 163 (170)
...+|||+|||+.+++++|+++|+.||.|..+.++++ +.++.++|||||+|.+.++|.+|+..| |+ ..++|++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~---~~~~g~~l~ 90 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS---THLYGRRLV 90 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC---CBSSSCBCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC---CeECCCEEE
Confidence 4579999999999999999999999999999999988 678899999999999999999999999 89 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.|+.+
T Consensus 91 v~~a~~ 96 (107)
T 2cph_A 91 LEWADS 96 (107)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999875
No 64
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=123.29 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=76.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
...+|||+|||+++++++|+++|+.|| .|..+.++.|+.++.++|||||+|.+.++|.+|+..||| ..++|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng---~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG---KVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT---CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC---CEECCeEeE
Confidence 457999999999999999999999999 999999999988999999999999999999999999999 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.++.+
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 999864
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.8e-19 Score=115.15 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=75.9
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~~a 85 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG---REFSGRALRVDNA 85 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS---BSCSSSCBEEEET
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC---CeeCCcEEEEEeC
Confidence 5899999999999999999999999999999999988899999999999999999999999999 9999999999998
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=113.53 Aligned_cols=81 Identities=27% Similarity=0.378 Sum_probs=75.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
..++|||+|||+++++++|+++|+.||.|..+.+..++. ++.++|||||+|.+.++|.+|++.||| ..++|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG---HTVDGHKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT---CEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC---CeeCCeEE
Confidence 457899999999999999999999999999999998875 447899999999999999999999999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 81 ~V~~a~~ 87 (98)
T 2cpf_A 81 EVRISER 87 (98)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999865
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=116.24 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=76.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|||+++++++|+++|++||.|..+.+..++ ++.++|||||+|.+.++|.+|++.||| ..++|+.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g---~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNG---KSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSS---CBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC---CEECCEEEEE
Confidence 345799999999999999999999999999999999988 889999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 81 ~~a~~ 85 (116)
T 2fy1_A 81 EQAKK 85 (116)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99864
No 68
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.7e-18 Score=112.79 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC---eeE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD---LKT 162 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~---~~i 162 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|++.||| ..+.+ ++|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG---SQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS---CCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC---CccCCCCCccE
Confidence 46799999999999999999999999999999999987 788999999999999999999999999 77777 999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999865
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.5e-19 Score=118.79 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=77.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng---~~i~g~~l~V~ 121 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG---MELDGRRIRVD 121 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT---CCSSSSCCEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 9865
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=114.71 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=72.9
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+++++++|+++|++||.|..+.+++++. +.++|||||+|.+.++|.+|+. +|+ ..++|+.|+|.+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~---~~~~gr~l~V~~ 85 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG---QKYKETDLLILF 85 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC---CCCTTTTCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC---CEECCEEEEEEE
Confidence 46999999999999999999999999999999999986 9999999999999999999999 899 999999999998
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7e-19 Score=116.95 Aligned_cols=79 Identities=35% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 115 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG---FQVGTKRLKVQ 115 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC---CEETTEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred ee
Q psy7847 166 IT 167 (170)
Q Consensus 166 ~~ 167 (170)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 72
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=2.9e-19 Score=143.07 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=76.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
.+|||+|||+.+++++|..+|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..||| ..++|+.|+|.|+
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng---~~i~gr~i~V~~a 179 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG---KKIDGRRVLVDVE 179 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC---CEECCEEEEEEEe
Confidence 5999999999999999999999999999999999988899999999999999999999999999 9999999999998
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 73
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=6.9e-19 Score=114.80 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=76.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc---CCeeE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV---GDLKT 162 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~---~~~~i 162 (170)
...+|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||+ ..+ ++++|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~~~~g~~l 88 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE---QKTLPGMNRPI 88 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT---TCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC---CcccCCCCceE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 666 89999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 89 ~v~~a~~ 95 (106)
T 2dgp_A 89 QVKPADS 95 (106)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9999865
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=112.51 Aligned_cols=79 Identities=29% Similarity=0.522 Sum_probs=74.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG---RIVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTT---CBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCC---CEeCCcEEEEE
Confidence 3579999999999999999999999999999999987 788999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 89 ~a~~ 92 (103)
T 2d9p_A 89 LAQR 92 (103)
T ss_dssp ECSS
T ss_pred Eecc
Confidence 9865
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=2.1e-18 Score=108.62 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=73.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++ +++ ..++|++|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~---~~~~g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKE---HRLDGRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSC---EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCC---CEECCEEEEE
Confidence 456799999999999999999999999999999999998889999999999999999999997 477 7899999999
Q ss_pred Eee
Q psy7847 165 SIT 167 (170)
Q Consensus 165 ~~~ 167 (170)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=112.18 Aligned_cols=79 Identities=24% Similarity=0.398 Sum_probs=74.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.|| |..+.+++++.++.++|||||+|.+.++|.+|+ .||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g---~~~~g~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG---ALLGDRSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT---CEETTEECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC---CeECCeEEEEE
Confidence 357999999999999999999999996 999999999888999999999999999999999 8999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 89 ~a~~ 92 (103)
T 2dng_A 89 IAEG 92 (103)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9865
No 77
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.1e-19 Score=109.91 Aligned_cols=74 Identities=8% Similarity=0.111 Sum_probs=69.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..-|+|+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|.+|++.||+ ..++|+.|+|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~---~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN---CVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT---EEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC---CEECCcEEEEEE
Confidence 45789999999999999999999999999998855 589999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
|.+
T Consensus 78 A~e 80 (89)
T 2wbr_A 78 PSE 80 (89)
T ss_dssp CCH
T ss_pred CCH
Confidence 853
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=113.39 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g---~~~~g~~l~V~ 90 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND---RPIGSRKVKLV 90 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC---CeeCCeEEEEE
Confidence 457999999999999999999999999998888888887899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9863
No 79
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=114.84 Aligned_cols=81 Identities=25% Similarity=0.242 Sum_probs=76.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 157 (170)
..++|||+|||+.+++++|+++|++||.|. .+.+..++.++.++|||||+|.+.++|.+|++.||| ..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~ 90 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG---KDF 90 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT---CEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC---Ccc
Confidence 457999999999999999999999999998 699999988899999999999999999999999999 999
Q ss_pred CCeeEEEEeecc
Q psy7847 158 GDLKTRSSITLK 169 (170)
Q Consensus 158 ~~~~i~v~~~~~ 169 (170)
+|++|+|.++.+
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999865
No 80
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=111.19 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCceEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 86 DDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
...+|||+|||+.+++++|+ ++|++||.|..+.++.++.. +|||||+|.+.++|.+|++.||| ..++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g---~~~~gr~ 81 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR---YKIGSKK 81 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT---EEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC---CEECCeE
Confidence 45799999999999999999 99999999999999988643 88999999999999999999999 9999999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|+++.+
T Consensus 82 l~V~~a~~ 89 (96)
T 2dgx_A 82 ILVSLATG 89 (96)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99999865
No 81
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=114.96 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=74.3
Q ss_pred CCceEEecCCCCCCCHHHHH---HHhccCCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 86 DDFRLFCGDLGNDVTDELLI---RTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
...+|||+|||+.+++++|. ++|++||.|..+.+.++... +.++|||||+|.+.++|.+|++.||| ..++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng---~~~~g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN---VVVDG 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT---EEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC---CEECC
Confidence 35699999999999999999 99999999999999888753 35679999999999999999999999 99999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
++|+|.++.+
T Consensus 91 r~l~V~~a~~ 100 (111)
T 2cpi_A 91 RTLKASLGTT 100 (111)
T ss_dssp EEEEEESCCC
T ss_pred EEEEEEeccc
Confidence 9999999875
No 82
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=112.01 Aligned_cols=79 Identities=25% Similarity=0.475 Sum_probs=74.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..++|||+|||+.+++++|+++|+.|| |..+.+++++.+ +.++|||||+|.+.++|.+|+ .||+ ..++|++|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g---~~~~g~~l~V 88 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE---ESLGNKRIRV 88 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT---CEETTEECEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC---CEeCCcEEEE
Confidence 357999999999999999999999999 999999998876 889999999999999999999 9999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99865
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.8e-18 Score=116.25 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG---QDLMGQPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT---CBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC---CeeCCeEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 98 ~a~~ 101 (126)
T 3ex7_B 98 WCFV 101 (126)
T ss_dssp ESEE
T ss_pred EecC
Confidence 9864
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=113.30 Aligned_cols=80 Identities=40% Similarity=0.624 Sum_probs=75.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccc-cCCeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF-VGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~-~~~~~i~ 163 (170)
...+|||+|||+.+++++|+++|+. ||.|..+.+.+++ ++.++|||||+|.+.++|.+|++.||+ .. ++|++|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~~g~~l~ 83 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG---AVGLGSKPVR 83 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTT---CCSSSSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccC---CcccCCEeEE
Confidence 3579999999999999999999999 9999999999998 899999999999999999999999999 88 9999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.++.+
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 999864
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=4.2e-18 Score=114.22 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=76.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG---VPLDGRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTT---EESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCC---CEECCcEEEE
Confidence 345799999999999999999999999999999999998 889999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++..
T Consensus 109 ~~a~~ 113 (124)
T 2kt5_A 109 QLVAS 113 (124)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99875
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.5e-18 Score=109.25 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=74.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.++ ++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g---~~~~g~~l~v~ 81 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNG---MKLSGREIDVR 81 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTT---CCBTTBCCCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEE
Confidence 4579999999999999999999999999999999874 688899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9865
No 87
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=114.64 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=74.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+ .||| ..++|+.|+|.++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g---~~~~g~~l~V~~a 101 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG---QRLLGVPIIVQAS 101 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT---EEETTEEEEEEEH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC---CEeCCeEEEEEec
Confidence 69999999999999999999999999999999999888999999999999999999999 9999 9999999999997
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 88
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.3e-18 Score=109.68 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=73.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+..++. .++|||||+|.+.++|.+|+..||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 88 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHG---TVVEGRKIEVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 357999999999999999999999999999999998863 3899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 89 ~a~~ 92 (103)
T 2cq3_A 89 NATA 92 (103)
T ss_dssp ECCS
T ss_pred Eccc
Confidence 9865
No 89
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=110.54 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=73.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+++ +.++|||||+|.+.++|.+|+..||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 88 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNG---RKILGKEVKVN 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTT---EEETTEEEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCC---CCcCCCeEEEE
Confidence 45799999999999999999999999999999999885 33689999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
No 90
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=110.79 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.++|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.+|+.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 345678999999999999999999999999999999999989999999999999999999999999863
No 91
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=110.04 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=69.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..+.+|||+|||+.+++++|+++|++||.|..+.++++ +|+|||+|.+.++|..|++.||+.+ ..++|++|.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~-~~i~Gr~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQ-IYIAGHPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSC-EEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCC-ceeCCcEEEE
Confidence 45689999999999999999999999999999988753 7899999999999999999999821 2488999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
+|+..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99875
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=117.89 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=76.7
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||..+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|+.|+|.+
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~~ 118 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG---FNILNKRLKVAL 118 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT---EECSSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC---CEECCeEEEEEE
Confidence 47999999999999999999999999999999999988889999999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 119 a~~ 121 (139)
T 1u6f_A 119 AAS 121 (139)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 93
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=113.24 Aligned_cols=81 Identities=25% Similarity=0.461 Sum_probs=73.5
Q ss_pred cCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK-RTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 84 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
....++|||+|||+++++++|+++|+.|| |..+.+.+++ .++.++|||||+|.+.++|.+|+ .||| ..++|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g---~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE---ESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT---CCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC---CEECCeEE
Confidence 34568999999999999999999999999 9999999987 58899999999999999999999 8999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 9999875
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.6e-19 Score=113.49 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=73.3
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.+ |.+|+..||| ..++|++|+|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g---~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN---TDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS---SCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC---CEECCeEEEEEEc
Confidence 47999999999999999999999999999999999888999999999999999 9999999999 9999999999998
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 78 ~~ 79 (90)
T 2ki2_A 78 NP 79 (90)
T ss_dssp --
T ss_pred CC
Confidence 75
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=111.81 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=75.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 89 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNG---QLLFDRPMHVK 89 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCC---CEeCCCEEEEE
Confidence 35799999999999999999999999999999999987 588999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 9863
No 96
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=107.40 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.| .|..+.++++ .++.++|+|||+|.+.++|.+|++ ||+ ..++|+.|+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g---~~~~gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNR---EYMGGRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCS---EEETTEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCC---ceeCCcEEEEE
Confidence 35799999999999999999999999 9999999998 588999999999999999999999 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 83 ~a~~ 86 (91)
T 2dgw_A 83 REKS 86 (91)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9875
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=5.2e-18 Score=118.07 Aligned_cols=82 Identities=24% Similarity=0.268 Sum_probs=78.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING---TRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT---SEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC---CEECCeEEEE
Confidence 4568999999999999999999999999999999999988899999999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.|+.+
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 99864
No 98
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=116.82 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 138 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE---SELFGRTIRVN 138 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE---EEETTEEEEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred ee
Q psy7847 166 IT 167 (170)
Q Consensus 166 ~~ 167 (170)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 99
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=112.33 Aligned_cols=80 Identities=29% Similarity=0.416 Sum_probs=75.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|+.. |+ ..++|+.|+|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~---~~~~g~~l~V~ 90 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP---HTLDGRNIDPK 90 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS---EEETTEEEBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC---CeECCEEEEEE
Confidence 457999999999999999999999999999999999988899999999999999999999998 99 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 91 ~a~~ 94 (105)
T 2dh8_A 91 PCTP 94 (105)
T ss_dssp CSCC
T ss_pred EccC
Confidence 9864
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=4e-18 Score=114.23 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=75.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||.++++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|+ .||| ..++|+.|+|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g---~~~~g~~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE---TVFRGRTIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT---CEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC---CeECCeEEEEEE
Confidence 469999999999999999999999999999999999888999999999999999999999 7999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 112 a~~ 114 (124)
T 2jwn_A 112 KRT 114 (124)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=111.62 Aligned_cols=76 Identities=9% Similarity=0.029 Sum_probs=68.7
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.|++. ...++|++|+|+|
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~-~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV-TPVLRGQPIYIQF 88 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTS-CCEETTEECCBCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccC-CceECCEEEEEEE
Confidence 579999999999999999999999999999999875 799999999999999999988641 1678999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 102
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-18 Score=110.82 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=74.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc--------
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV-------- 157 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-------- 157 (170)
...+|||+|||+.+++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|+..||| ..+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g---~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNG---KFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBT---CCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC---CEEcCCccccC
Confidence 45799999999999999999999999999999999998 889999999999999999999999999 777
Q ss_pred CCeeEEEEeecc
Q psy7847 158 GDLKTRSSITLK 169 (170)
Q Consensus 158 ~~~~i~v~~~~~ 169 (170)
.+++|+|.|+.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 688899999875
No 103
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-19 Score=119.16 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=75.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcc----ccCC
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL----FVGD 159 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----~~~~ 159 (170)
...+|||+|||+++++++|+++|++||.|.. +.+++|+.++.++|||||+|.+. +|.+|+..||| . .++|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g---~~~~~~~~g 97 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA---LHPPLTIDG 97 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT---CCCSCCGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC---CCCCccCCC
Confidence 3569999999999999999999999999976 99999998999999999999999 99999999999 7 9999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
+.|+|.++.+
T Consensus 98 r~l~V~~a~~ 107 (131)
T 2m2b_A 98 KTINVEFAKG 107 (131)
T ss_dssp CCCCCEECCC
T ss_pred EEEEEEECCC
Confidence 9999999864
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.6e-18 Score=112.26 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=74.7
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+.+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++. |+ ..++|+.|+|.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~---~~~~g~~l~V~~a 103 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP---HSIDGRVVEPKRA 103 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS---EEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC---cEECCEEEEEEEC
Confidence 6999999999999999999999999999999999988899999999999999999999998 98 9999999999998
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
.+
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=112.15 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=75.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhc--CCCccccCCee
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVV-RDKRTNKTKGFGFVSFKDPQDFIRANKEMN--EFPHLFVGDLK 161 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~~~~~~~ 161 (170)
..++|||+|||+.+++++|+++|+.||. |..+.++ .++.++.++|||||+|.+.++|.+|+..|| + ..++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~---~~~~g~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR---IQLWGHQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC---SCBTTBC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC---ceecCCe
Confidence 4579999999999999999999999998 9999988 777778999999999999999999999997 6 8899999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|.|+.+
T Consensus 84 l~V~~a~~ 91 (109)
T 2dis_A 84 IAVDWAEP 91 (109)
T ss_dssp CEEEESCS
T ss_pred EEEEEcCC
Confidence 99999874
No 106
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=8e-18 Score=110.48 Aligned_cols=81 Identities=22% Similarity=0.384 Sum_probs=73.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|+..+ + ..++|+.|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~---~~l~g~~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-R---HELDSKTIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-C---EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-C---CcCCCEEEEE
Confidence 34579999999999999999999999999999999999888999999999999999999999975 6 8999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 99 ~~a~~ 103 (109)
T 2rs2_A 99 KVAFP 103 (109)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=111.28 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=73.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||..+++++|+++|++||.|..+.+.+++ +.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~ 102 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHG---TVVEGRKIEVN 102 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCC---CEECCEEEEEE
Confidence 35799999999999999999999999999999999885 34899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 108
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-18 Score=111.59 Aligned_cols=80 Identities=28% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.+|+ .++|++|+|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~----~~~g~~l~V~ 91 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP----IIDGRKANVN 91 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC----EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC----cCCCEEEEEE
Confidence 357999999999999999999999999999999999988899999999999999999999998886 4889999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 9854
No 109
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=113.08 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=74.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSF-LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..++|||+|||+.+++++|+++|+.||.| ..+.+++++ ++.++|||||+|.+.++|.+|++. |+ ..++|+.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~---~~~~gr~i~v 88 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR---KKLNGREAFV 88 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS---EEETTEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC---CccCCeEEEE
Confidence 35799999999999999999999999999 889999998 899999999999999999999997 99 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 110
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=9e-18 Score=117.98 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=76.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+.+|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG---AEIMGQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC---CEECCEEEEEE
Confidence 356899999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 148 ~a~~ 151 (165)
T 1rk8_A 148 WCFV 151 (165)
T ss_dssp ESEE
T ss_pred EecC
Confidence 9864
No 111
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=105.97 Aligned_cols=75 Identities=24% Similarity=0.405 Sum_probs=71.0
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+|||+|||+++++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.++ ..++|++|+|.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~----~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR----HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT----CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC----CccCCEEEEEEec
Confidence 79999999999999999999999999999999998889999999999999999999999777 6789999999987
No 112
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=9.4e-19 Score=107.15 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=70.8
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
+|||+|||+++++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|.+|++. ++ ..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~---~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY---HNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS---CCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC---CeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 88 8899999999875
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=5e-18 Score=113.02 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=73.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
..++|||+|||+++++++|+++|+.||. |..+.+++++. +.++|||||+|.+.++|.+|++ +|+ ..++|+.|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g---~~~~gr~i 90 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR---ESMGHRYI 90 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT---EEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC---CeECCeEE
Confidence 3578999999999999999999999999 89999999885 8999999999999999999999 999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998853
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-18 Score=109.41 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...+|||+|||+.+++++|+++|++||.|.. +.++.+ .++.++|||||+|.+.++|.+|++. |+ ..++++.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~---~~~~gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HK---ERIGHRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TT---CCSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Cc---chhCCcEEEE
Confidence 3579999999999999999999999999987 888888 5899999999999999999999997 99 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 98864
No 115
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=107.54 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+. ++ ..++|+.|+|.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~---~~~~g~~l~v~ 88 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QR---HMIDGRWCDCK 88 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SC---EEETTEEEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cC---CeeCCeEEEEE
Confidence 45789999999999999999999999999999999998889999999999999999999999 46 88999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 89 ~a~~ 92 (103)
T 2cqg_A 89 LPNS 92 (103)
T ss_dssp CCCT
T ss_pred ecCC
Confidence 9865
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=110.22 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=69.1
Q ss_pred CCceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...+|||+|||+ .+++++|+++|++||.|..+.++++ +|+|||+|.+.++|..|++.||+. ...++|++|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~-~~~~~Gr~l~V 86 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTT-PALVFGKPVRV 86 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHS-CCEETTEECEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCC-CceECCcEEEE
Confidence 457999999999 9999999999999999999999865 579999999999999999999861 14589999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99974
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=107.54 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=67.1
Q ss_pred ceEEecCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe-
Q psy7847 88 FRLFCGDLGNDV------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL- 160 (170)
Q Consensus 88 ~~l~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~- 160 (170)
++|||+|||+.+ ++++|+++|++||.|..+.+.+ .++.++|||||+|.+.++|.+|+..||| ..++|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng---~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG---YKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSS---CCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcC---cccCCce
Confidence 589999999999 7799999999999999998873 4788999999999999999999999999 999999
Q ss_pred eEEEE
Q psy7847 161 KTRSS 165 (170)
Q Consensus 161 ~i~v~ 165 (170)
+|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88874
No 118
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=110.05 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+.++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+|+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999999999999989999999999999999999999999974
No 119
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=111.04 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=69.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.+++. ...++|++|+|.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~-~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSV-TPVLRGQPIYIQ 102 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHH-CCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccC-CceECCeEEEEE
Confidence 4579999999999999999999999999999999875 799999999999999999998841 157999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+..
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 120
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=4.6e-18 Score=115.77 Aligned_cols=78 Identities=14% Similarity=0.080 Sum_probs=73.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
..+|||+|||+++++++|+++|++||. |..+.+++|+. +.++|||||+|.+.++|.+|++ +|+ ..++|+.|+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g---~~l~gr~i~ 118 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDR---ESMGHRYIE 118 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTE---EESSSSEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC---CEECCEEEE
Confidence 579999999999999999999999999 88999999985 9999999999999999999999 999 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998753
No 121
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=106.95 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=68.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.|++. ...++|++|+|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~-~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAV-TPHLRNQPIYIQ 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS-CCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC-CceECCcEEEEE
Confidence 4579999999999999999999999999999988764 799999999999999999987531 177999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+..
T Consensus 87 ~a~~ 90 (101)
T 2cq1_A 87 YSNH 90 (101)
T ss_dssp ECSC
T ss_pred EcCc
Confidence 9865
No 122
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=108.53 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|++.||+ ..++|++|+|.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 94 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG---YDYDGYRLRVE 94 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEE
Confidence 3579999999999999999999999999999998654 45799999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 95 ~a~~ 98 (109)
T 1x4a_A 95 FPRS 98 (109)
T ss_dssp CCCC
T ss_pred Eccc
Confidence 9865
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=110.89 Aligned_cols=78 Identities=17% Similarity=0.254 Sum_probs=72.0
Q ss_pred CceEEecCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 87 DFRLFCGDLGNDV------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 87 ~~~l~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
.++|||+|||+.+ ++++|+++|++||.|..+.+.+ .++.++|||||+|.+.++|.+|+..||| ..++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g---~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG---YKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSS---EECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCC---cccCCC
Confidence 4689999999999 7899999999999999998873 4788999999999999999999999999 999998
Q ss_pred -eEEEEeecc
Q psy7847 161 -KTRSSITLK 169 (170)
Q Consensus 161 -~i~v~~~~~ 169 (170)
+|+|.++..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999999863
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=108.12 Aligned_cols=77 Identities=9% Similarity=0.098 Sum_probs=68.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.||+. ...++|++|+|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~-~~~i~Gr~l~V~ 86 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADV-PVYIAGQQAFFN 86 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHS-CCBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccC-CceECCEEEEEE
Confidence 4579999999999999999999999999999988753 789999999999999999998761 145899999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9864
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=109.15 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=71.3
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+++++++|+++|+.||. ..+.+++++ ++.++|||||+|.+.++|.+|++ +|+ ..++++.|+|..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~---~~~~gr~i~V~~ 88 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDK---ANMQHRYVELFL 88 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSS---CCSSSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCC---CeECCcEEEEEE
Confidence 469999999999999999999999995 599999998 89999999999999999999995 799 999999999998
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 764
No 126
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=109.18 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+.+|||+|||+++|+++|+++|+.|| .|.++++++++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 46899999999999999999999999 899999999998999999999999999999999987653
No 127
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=108.62 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=70.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
.+|||+|||+.+++++|+++|+.| .|..+.+++|+. +.++|+|||+|.+.++|.+|+ .+|+ ..++|+.|+|..+
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~---~~~~gr~i~V~~a 90 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNR---MLMIQRYVEVSPA 90 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTT---EEETTEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCC---CeECCeEEEEEEC
Confidence 589999999999999999999999 899999999874 899999999999999999999 6999 9999999999877
Q ss_pred c
Q psy7847 168 L 168 (170)
Q Consensus 168 ~ 168 (170)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-18 Score=115.35 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=73.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|+. ||+ ..++|+.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g---~~~~gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK---QYMGNRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS---BCSTTSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC---CeECCcEEEEE
Confidence 45799999999999999999999999999886666666689999999999999999999999 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 129
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=105.52 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=69.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC--CeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG--DLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~--~~~i~ 163 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.||+ ..++ |++|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g---~~~~~~g~~l~ 86 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG---FPLGGPDRRLR 86 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT---CBCSSSSCBCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC---CEeCCCCcEEE
Confidence 4579999999999999999999999999999988654 78999999999999999999999 8888 99999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.|+.+
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=106.28 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|.+|+..||+ ..++|++|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 86 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK---REIEGRAIRLE 86 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS---EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC---CEeCCeEEEEE
Confidence 45799999999999999999999999977 45555 4788999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9865
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=106.30 Aligned_cols=76 Identities=26% Similarity=0.413 Sum_probs=70.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.||| ..++|++|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g---~~~~g~~l~v 83 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDN---MPLRGKQLRV 83 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTT---CCBTTBCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCC---CEeCCceEEE
Confidence 34579999999999999999999999999999998754 78999999999999999999999 8999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99865
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.4e-17 Score=109.64 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=70.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
....+|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|++.||| ..++|+.|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng---~~l~Gr~i~ 98 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNN---IEFRGSVIT 98 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTT---EEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCC---CEECCeEEE
Confidence 3457999999999999999999999999 8999888532 3689999999999999999999999 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999863
No 133
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=103.14 Aligned_cols=73 Identities=19% Similarity=0.396 Sum_probs=68.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..||+ ..++|++|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 75 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHH---YKLHGVNINVE 75 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT---CBCSSCBCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC---CccCCcEEEEE
Confidence 45799999999999999999999999999999886 57999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9865
No 134
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.4e-18 Score=124.08 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=75.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
...+|||+|||+.+++++|+++|+.|| .|..|.+++|+.++.++|||||+|.+.++|.+|++.||+ ..++|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng---~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK---RELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT---SCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC---CeECCEEeE
Confidence 456899999999999999999999999 999999999988999999999999999999999999999 999999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|.++.+
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999853
No 135
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=107.17 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC-----e
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD-----L 160 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~-----~ 160 (170)
..++|||+|||+.+++++|+++|++||.|..+.+..+ |||||+|.+.++|.+|++.||+ ..++| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g---~~~~g~~~~~~ 83 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN---TKFRSHEGETA 83 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS---EEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc---CCccCCcCcce
Confidence 3579999999999999999999999999999999775 8999999999999999999999 99999 9
Q ss_pred eEEEEeecc
Q psy7847 161 KTRSSITLK 169 (170)
Q Consensus 161 ~i~v~~~~~ 169 (170)
.|+|.++.+
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999865
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=111.33 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=70.6
Q ss_pred CCceEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 86 DDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
...+|||+|||+.+++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|..|+..||| ..+.|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng---~~l~gr~ 101 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQG---YPFQGNP 101 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTT---CCCTTSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCC---CEeCCCE
Confidence 35799999999999999876 6999999999987753 567899999999999999999999999 9999999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|.|+..
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 137
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3.4e-18 Score=116.81 Aligned_cols=78 Identities=10% Similarity=0.064 Sum_probs=71.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|++|| +..+.+++|+. +.++|||||+|.+.++|.+|+ .+|+ ..++++.|+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g---~~l~gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDR---ANMQHRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCS---CSSSSCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCC---CEECCEEEEEE
Confidence 346999999999999999999999999 67999999975 999999999999999999999 7899 99999999998
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
.+.+
T Consensus 119 ~a~~ 122 (139)
T 2hgn_A 119 LNST 122 (139)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8764
No 138
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=4.3e-17 Score=107.76 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.||.|..+.+.++ +.++|||||+|.+.++|.+|+..||| ..++|+.|+|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~v~ 80 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSG---FNVSNRYLVVL 80 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTT---CBSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEE
Confidence 3579999999999999999999999999999999865 44589999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 9863
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=108.20 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+.+++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|.+|+..||| ..++|++|+|.|
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~~ 80 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAY---SKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTT---CBSSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCC---CEECCeEEEEEE
Confidence 46899999999999999999999999999998864 478999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 81 a~~ 83 (111)
T 1whx_A 81 API 83 (111)
T ss_dssp EET
T ss_pred CCC
Confidence 864
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=102.35 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=68.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-cCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM-NEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~~~~i~v 164 (170)
...+|||+|||+.+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|.+|++.| |+ ..++|++|+|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~---~~~~g~~l~v 81 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK---LIVNGRRLNV 81 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT---CEETTEECCE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC---eeECCCEEEE
Confidence 3579999999999999999999999999999999864 789999999999999999998 98 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
.|+.
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9973
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=107.68 Aligned_cols=73 Identities=26% Similarity=0.503 Sum_probs=69.4
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++.||| ..++|++|+|.++.
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDG---KVICGSRVRVELST 73 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHH---SCSSSCCCEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCC---CeECCcEEEEEEcc
Confidence 7999999999999999999999999999999876 689999999999999999999999 89999999999986
Q ss_pred c
Q psy7847 169 K 169 (170)
Q Consensus 169 ~ 169 (170)
+
T Consensus 74 ~ 74 (101)
T 2hvz_A 74 G 74 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=111.15 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=73.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
..++|||+|||+++++++|+++|+.||. |..+.+++++. +.++|+|||+|.+.++|.+|+. +|+ ..++|+.|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~---~~~~gr~i 84 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHR---MYMGQRYV 84 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTT---CCSSSSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCc---ceeCCeEE
Confidence 3578999999999999999999999888 89999999886 9999999999999999999999 999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998763
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5.9e-17 Score=112.95 Aligned_cols=80 Identities=28% Similarity=0.384 Sum_probs=76.2
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
+++|||+|||+.+++++|+++|+.||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.||| ..++|++|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~---~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG---LRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC---CccCCceEEEEe
Confidence 46899999999999999999999999999999999988899999999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 79 ~~~ 81 (167)
T 1fxl_A 79 ARP 81 (167)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 144
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=107.38 Aligned_cols=78 Identities=21% Similarity=0.424 Sum_probs=72.3
Q ss_pred HcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 83 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
.-...++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..||| ..++|++|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l 91 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG---TTIEGHVV 91 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT---CEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCC---CEECCcEE
Confidence 3445689999999999999999999999999999999875 78999999999999999999999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.|+.+
T Consensus 92 ~v~~a~~ 98 (109)
T 1x4g_A 92 KCYWGKE 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999865
No 145
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=7.6e-17 Score=103.63 Aligned_cols=75 Identities=27% Similarity=0.399 Sum_probs=69.6
Q ss_pred cCCCceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 84 MNDDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 84 ~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
.+...+|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.||| ..++|++|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l 87 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ---EMNFGKKL 87 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT---SEETTEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC---CEECCEEE
Confidence 34568999999998 99999999999999999999882 78999999999999999999999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999865
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=4.5e-17 Score=113.81 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=76.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~---~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG---ITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC---CEeCCcEEEEE
Confidence 357899999999999999999999999999999999988899999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 79 ~~~~ 82 (168)
T 1b7f_A 79 YARP 82 (168)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9864
No 147
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.9e-17 Score=102.22 Aligned_cols=70 Identities=27% Similarity=0.460 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|++.+++
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 3445678999999999999999999999999999999999988899999999999999999999999886
No 148
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=104.72 Aligned_cols=78 Identities=29% Similarity=0.452 Sum_probs=71.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|+.| ..+.++.++.++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 87 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED---GEIDGNKVTLD 87 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEE
Confidence 45799999999999999999999977 3677777877889999999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 88 ~a~~ 91 (102)
T 2fc8_A 88 WAKP 91 (102)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9875
No 149
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.3e-17 Score=105.88 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=69.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||..+++++|+++|+.||.|..+.+.+ ++|||||+|.+.++|.+|+..||| ..++|+.|+|+|
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V~~ 97 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALAN---FPFQGRNLRTGW 97 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTT---CEETTEECCCCB
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEEe
Confidence 57999999999999999999999999999998873 479999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.9e-17 Score=106.16 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCceEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 85 NDDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
....+|||+|||+.+++++|+ ++|++||.|..+.+.+ ++.++|||||+|.+.++|.+|+..||| ..++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~ 79 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG---FPFYDK 79 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT---CEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC---CEECCc
Confidence 456799999999999999999 9999999999998864 356789999999999999999999999 999999
Q ss_pred eEEEEeecc
Q psy7847 161 KTRSSITLK 169 (170)
Q Consensus 161 ~i~v~~~~~ 169 (170)
+|+|+++.+
T Consensus 80 ~l~v~~a~~ 88 (97)
T 1nu4_A 80 PMRIQYAKT 88 (97)
T ss_dssp ECEEEECSS
T ss_pred EEEEEEccC
Confidence 999999875
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=7.6e-17 Score=105.63 Aligned_cols=74 Identities=20% Similarity=0.326 Sum_probs=69.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..||| ..++|+.|+|
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g---~~~~g~~l~V 97 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHG---KSFANQPLEV 97 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCC---CEECCeEEEE
Confidence 346799999999999999999999999999999886 68999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 98 ~~a~~ 102 (108)
T 2jvo_A 98 VYSKL 102 (108)
T ss_dssp ESCSC
T ss_pred EEecC
Confidence 99865
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=108.43 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCceEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 85 NDDFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 85 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
....+|||+|||++ +++++|+++|++||.|..+.+.+. +|||||+|.+.++|.+|++.||+. ...++|++|+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~-~~~l~Gr~l~ 95 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKK-ALWFQGRCVK 95 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHS-CCCSSSSCCE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccC-CceECCEEEE
Confidence 34679999999998 999999999999999999998643 799999999999999999988641 1568999999
Q ss_pred EEeecc
Q psy7847 164 SSITLK 169 (170)
Q Consensus 164 v~~~~~ 169 (170)
|+|+.+
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999975
No 153
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.4e-17 Score=102.97 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=66.6
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...++.+.++|||+|||+++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|+..+++
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 79 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 79 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 344556688999999999999999999999999999999999988899999999999999999999999886
No 154
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=104.64 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=68.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+.+++++|+++|++||.|. +.+..+ .++|||||+|.+.++|.+|++.||| ..++|++|+|.+
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~~ 90 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQG---LRLGTDTLRVAL 90 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTT---CCSSSSCCEEEE
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEEE
Confidence 57999999999999999999999999997 566554 4689999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 91 a~~ 93 (97)
T 2e5j_A 91 ARQ 93 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 155
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=106.64 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCC--eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~--v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.-.+|||+|||+++|+++|+++|++||. +.+|++++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 3468999999999999999999999995 679999999999999999999999999999999998864
No 156
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=104.53 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=66.5
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..++.+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+..+++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM 79 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC
Confidence 344556688999999999999999999999999999999999988899999999999999999999999886
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=7e-17 Score=117.74 Aligned_cols=80 Identities=31% Similarity=0.448 Sum_probs=76.3
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+++++++|+++|++||.|..|.+++|+.++.++|||||+|.+.++|.+|++.+|+ ..+.|+.+++.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~---~~~~g~~i~~~~ 91 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF---DVIKGKPVRIMW 91 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh---hhcCCccccccc
Confidence 46999999999999999999999999999999999998999999999999999999999999999 999999999998
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 158
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=6.4e-17 Score=101.69 Aligned_cols=68 Identities=25% Similarity=0.499 Sum_probs=62.5
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
..++.+.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 44556788999999999999999999999999999999999988899999999999999999999965
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.7e-17 Score=107.56 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----ceEEe--
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----FRLFC-- 92 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----~~l~v-- 92 (170)
+..+++|||+|||.++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|.+|+..+|+. ..|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445789999999999999999999999999999999864 556899999999999999999998874 34444
Q ss_pred -------cCCCCCCCHHHHHHHhccCCC
Q psy7847 93 -------GDLGNDVTDELLIRTFSKYPS 113 (170)
Q Consensus 93 -------~nlp~~~~~~~l~~~f~~~g~ 113 (170)
.+++...++++|+++|++||.
T Consensus 82 a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAFQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHTTTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhhhhhhHhHhHHHHHHHHHHhCC
Confidence 356777889999999998875
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=104.97 Aligned_cols=73 Identities=23% Similarity=0.491 Sum_probs=67.1
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+....+.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 3445566678999999999999999999999999999999999988899999999999999999999998886
No 161
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=6.9e-17 Score=101.03 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=64.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.++|||+|||+++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|++.+++.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999999999889999999999999999999999998873
No 162
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=103.15 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=66.2
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE--------EEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--------AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~--------i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+...++|||+|||.++++++|+++|+.||.|.+ ++++.++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344556789999999999999999999999999999 999999888999999999999999999999988864
No 163
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=105.20 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=66.5
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..+..+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|+..+++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC
Confidence 344556688999999999999999999999999999999999988899999999999999999999998886
No 164
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=7.5e-17 Score=108.92 Aligned_cols=73 Identities=25% Similarity=0.360 Sum_probs=67.6
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+..++.+.++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng 110 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG 110 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3455567788999999999999999999999999999999999988899999999999999999999999886
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.7e-17 Score=115.19 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=75.6
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
..+|||+|||+.+++++|+++|+.||.|..|.+..++ ++.++|+|||+|.+.++|.+|++.||| ..++|++|+|.|
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng---~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG---VPLDGRPMDIQL 163 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTT---CBCSSSBCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCC---CEECCEEEEEEE
Confidence 5799999999999999999999999999999999988 889999999999999999999999999 999999999999
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 864
No 166
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-17 Score=104.16 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=67.1
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+..+..+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|+..+++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3445566889999999999999999999999999999999999889999999999999999999999998863
No 167
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-18 Score=110.67 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ ||| ..++|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g---~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG---LKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG---CCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC---cEECCcEEEEE
Confidence 4579999999999999999999999998877 556666678899999999999999999999 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 9864
No 168
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9e-17 Score=106.68 Aligned_cols=71 Identities=38% Similarity=0.472 Sum_probs=65.7
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+..+.++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999999999999999888999999999999999999999999873
No 169
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=1.3e-16 Score=105.50 Aligned_cols=71 Identities=34% Similarity=0.472 Sum_probs=65.6
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....+.++|||+|||.++++++|+++|+.||.|.++++++++.++.+++||||+|.+.++|.+|++.+++
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 34445678999999999999999999999999999999999988899999999999999999999999886
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8e-18 Score=111.27 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g---~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG---YKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT---CBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC---CEeCCcEEEEE
Confidence 357999999999999999999999999984332222222677899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9865
No 171
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=101.50 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999999988899999999999999999999998875
No 172
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=3.5e-17 Score=105.74 Aligned_cols=67 Identities=25% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCC------CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGN------DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~------~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+++|||+|||. ++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3467999999999 999999999999999999999999998899999999999999999999998886
No 173
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=100.99 Aligned_cols=73 Identities=15% Similarity=0.368 Sum_probs=68.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|+..||+ ..++|+.|+|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~V~ 77 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDN---TEFQGKRMHVQ 77 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTT---EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC---CeeCCcEEEEE
Confidence 457999999999999999999999999999998863 4999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 78 ~a~~ 81 (92)
T 2dgt_A 78 LSTS 81 (92)
T ss_dssp ESSC
T ss_pred EccC
Confidence 9865
No 174
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=102.90 Aligned_cols=69 Identities=30% Similarity=0.447 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 345678999999999999999999999999999999999988899999999999999999999999886
No 175
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1e-16 Score=102.76 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=68.7
Q ss_pred HcCCCceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 83 EMNDDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 83 ~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
......+|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.||| ..++|++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQ---EMNFGKK 74 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTC---SSCBTTT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC---CeeCCcE
Confidence 345678999999998 99999999999999999999883 78999999999999999999999 9999999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|.++.+
T Consensus 75 l~V~~a~~ 82 (96)
T 2kvi_A 75 LILEVSSS 82 (96)
T ss_dssp BCEEEEEC
T ss_pred EEEEEcCc
Confidence 99999864
No 176
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-17 Score=103.30 Aligned_cols=69 Identities=22% Similarity=0.398 Sum_probs=64.8
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCee-EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFL-KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~-~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....++|||+|||+++++++|+++|+.||.|. ++++++++.++.+++||||+|.+.++|.+|+..+++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 74 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC
Confidence 344678999999999999999999999999999 999999988999999999999999999999998886
No 177
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=104.57 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=60.9
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||+++|+++|+++|+.||+|.++.+++++. |.++|||||+|.+.++|.+|+. +++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~ 73 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPG 73 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCC
Confidence 34568999999999999999999999999999999999975 9999999999999999999998 554
No 178
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=102.18 Aligned_cols=69 Identities=22% Similarity=0.454 Sum_probs=63.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+..+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|+. +++
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~ 73 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF 73 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC
Confidence 344567899999999999999999999999999999999998889999999999999999999998 765
No 179
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=102.06 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=64.1
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+.++|||+|||.++++++|+++|+.||.|.++.++.++ +|.+++||||+|.+.++|.+|+..+++
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g 80 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG 80 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC
Confidence 344567899999999999999999999999999999999997 899999999999999999999999886
No 180
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=100.81 Aligned_cols=67 Identities=34% Similarity=0.598 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 70 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 70 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999999988899999999999999999999999886
No 181
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=104.99 Aligned_cols=72 Identities=31% Similarity=0.478 Sum_probs=66.1
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
......+.++|||+|||.++++++|+++|+.||.|.++++++++.++.+++||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 344455678999999999999999999999999999999999988899999999999999999999998875
No 182
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=101.03 Aligned_cols=67 Identities=25% Similarity=0.523 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.++++|||+|||.++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|+..+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 69 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 4578999999999999999999999999999999999988899999999999999999999998886
No 183
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.1e-16 Score=103.93 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=68.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.||+ ..++|++|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNG---KDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTT---EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCC---CccCCCEEEE
Confidence 345799999999999999999999999999999885 45999999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 78 ~~a~~ 82 (103)
T 2dgu_A 78 VFAKP 82 (103)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99864
No 184
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.69 E-value=1.7e-16 Score=104.82 Aligned_cols=72 Identities=35% Similarity=0.580 Sum_probs=66.8
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+..+.++|||+|||.++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|+..+++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 79 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 79 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 344556788999999999999999999999999999999999988899999999999999999999999886
No 185
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=3.3e-17 Score=106.10 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=72.5
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+.+++++|+++|+.||.|..+.+.+++ ++.++|||||+|.+.++|.+|+. ++ ..++|+.|.|.+
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~---~~~~g~~l~v~~ 82 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQ---INFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CC---CEETTEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CC---CeECCEEEEEEE
Confidence 4689999999999999999999999999999999998 89999999999999999999999 88 899999999998
Q ss_pred ecc
Q psy7847 167 TLK 169 (170)
Q Consensus 167 ~~~ 169 (170)
+.+
T Consensus 83 a~~ 85 (102)
T 2xs2_A 83 AIR 85 (102)
T ss_dssp EEE
T ss_pred CCc
Confidence 763
No 186
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=8.3e-17 Score=104.83 Aligned_cols=71 Identities=18% Similarity=0.470 Sum_probs=65.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|+..+++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34556789999999999999999999999999999999999888999999999999999999999988863
No 187
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=1.3e-16 Score=100.68 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=68.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|++.||| ..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g---~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQ---YSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTT---EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCC---CeECCcEEEEE
Confidence 35689999999999999999999999 99998884 4689999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 74 ~a~~ 77 (88)
T 1wg1_A 74 LQPT 77 (88)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9864
No 188
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.3e-16 Score=99.25 Aligned_cols=66 Identities=39% Similarity=0.717 Sum_probs=62.6
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..+++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 368999999999999999999999999999999999889999999999999999999999998863
No 189
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=8e-17 Score=105.68 Aligned_cols=72 Identities=25% Similarity=0.433 Sum_probs=60.4
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
...+++.+.++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|+..++
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 344556678899999999999999999999999999999999998889999999999999999999997653
No 190
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1.4e-16 Score=101.99 Aligned_cols=67 Identities=22% Similarity=0.416 Sum_probs=63.4
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
++++|||+|||.++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|+..+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3679999999999999999999999999999999999888999999999999999999999998863
No 191
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=103.83 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=64.9
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
.++.+.++|||+|||+++++++|+++|+.||.|.++.+++++.++.++|||||+|.+.++|.+|+..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 345567899999999999999999999999999999999998889999999999999999999999988
No 192
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.7e-17 Score=107.03 Aligned_cols=66 Identities=20% Similarity=0.355 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+ .+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 44578999999999999999999999999999999999888999999999999999999999 8886
No 193
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=109.63 Aligned_cols=73 Identities=14% Similarity=0.313 Sum_probs=65.8
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE--EEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~--i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.........++|||+|||+++++++|+++|+.||.|.. |++++++.+|.++|||||+|.+. +|.+|+..+++.
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 33344466789999999999999999999999999976 99999998999999999999999 999999999974
No 194
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=2.4e-16 Score=102.46 Aligned_cols=67 Identities=24% Similarity=0.413 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+++|+.||.|.++.++.++ +|.+++||||+|.+.++|.+|+..+++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 3457899999999999999999999999999999999997 899999999999999999999998886
No 195
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=101.04 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=68.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.+ +||||+|.+.++|.+|++.||| ..++|++|+|.
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 76 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNG---KEVKGKRINVE 76 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC---CEECCcEEEEE
Confidence 457999999999999999999999999999998863 4999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 77 ~a~~ 80 (90)
T 2dnp_A 77 LSTK 80 (90)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9875
No 196
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-16 Score=100.83 Aligned_cols=74 Identities=16% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKY--PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
...++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..||| ..++|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l 81 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNG---KVLDGSPI 81 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS---EEETTEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC---CEeCCcEE
Confidence 345799999999999999999999999 889888763 67999999999999999999999 99999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|.++.+
T Consensus 82 ~v~~a~~ 88 (99)
T 2cpd_A 82 EVTLAKP 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9999875
No 197
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=4.3e-17 Score=104.36 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+.+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~~l~v~ 86 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG---AEIDGRSVSLY 86 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE---EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC---CEECCeEEEEE
Confidence 35799999999999999999999999988766 22677899999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9864
No 198
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.7e-17 Score=108.19 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 75 QDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSF----LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 75 ~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
..+.+.+. -....+|||+|||+++++++|+++|++||.| ..|.++.+. ++.++|+|||+|.+.++|.+|++. |
T Consensus 12 ~~~~~~~~-~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~ 88 (123)
T 2dha_A 12 NEVAQFLS-KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-H 88 (123)
T ss_dssp HHHHHHHH-CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-T
T ss_pred hhHHhhcc-CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-C
Confidence 34445553 3456899999999999999999999999875 688888885 899999999999999999999996 8
Q ss_pred CCCccccCCeeEEEEeec
Q psy7847 151 EFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 151 ~~~~~~~~~~~i~v~~~~ 168 (170)
+ ..++++.|+|..+.
T Consensus 89 ~---~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 89 K---DLLGKRYIELFRST 103 (123)
T ss_dssp T---EESSSCEECCEEEC
T ss_pred C---CeeCCeEEEEEECC
Confidence 8 99999999998775
No 199
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3.5e-17 Score=103.71 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCC--CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
++|||+|||.++++++|+++|+.|| .+.+++++.++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 5799999999999999999999999 999999999998999999999999999999999998886
No 200
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=103.37 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 87 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 87 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999999988899999999999999999999998886
No 201
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=102.68 Aligned_cols=70 Identities=34% Similarity=0.573 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+.++|||+|||+++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|++.+++
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 76 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3455678999999999999999999999999999999999988899999999999999999999999886
No 202
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-18 Score=114.25 Aligned_cols=81 Identities=25% Similarity=0.274 Sum_probs=75.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--------AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 157 (170)
...+|||+|||+.+++++|+++|++||.|.. +.+..++.++.++|||||+|.+.++|.+|+..||| ..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g---~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG---KEF 82 (116)
Confidence 4568999999999999999999999999998 88988877889999999999999999999999999 999
Q ss_pred CCeeEEEEeecc
Q psy7847 158 GDLKTRSSITLK 169 (170)
Q Consensus 158 ~~~~i~v~~~~~ 169 (170)
+|++|+|.++.+
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 999999999864
No 203
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=102.64 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=65.1
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEec-CCCCCcCCEEEEEeCCHHHHHHHHHHc-CC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD-KRTNKTKGFGFVSFKDPQDFIRANKEM-ND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~-~~~~~~~~~afv~f~~~~~a~~~~~~~-~~ 86 (170)
.......++|||+|||.++++++|+++|+.||.|.++.++++ +.++.+++||||+|.+.++|.+|+..+ ++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 81 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS 81 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC
Confidence 344556789999999999999999999999999999999998 778999999999999999999999998 65
No 204
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=102.36 Aligned_cols=70 Identities=41% Similarity=0.630 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhc-CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~-~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.++.+.++|||+|||+++++++|+++|+. ||.|.++.++.++ +|.++|||||+|.+.++|.+|+..+++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC
Confidence 34456789999999999999999999999 9999999999998 9999999999999999999999988863
No 205
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=103.39 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|++.+++
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 76 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999999999999988899999999999999999999998886
No 206
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=5.8e-17 Score=108.82 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCee--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFL--KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKT 162 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i 162 (170)
....+|||+|||+++++++|+++|+.| .|. .|.+++|+. +.++|||||+|.+.++|.+|++ +++ ..++|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~---~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHK---ERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTT---CCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCC---CEECCEEE
Confidence 345799999999999999999999999 666 899999885 9999999999999999999998 478 89999999
Q ss_pred EEEeecc
Q psy7847 163 RSSITLK 169 (170)
Q Consensus 163 ~v~~~~~ 169 (170)
+|..+.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 207
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=5e-16 Score=104.46 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhcCCCccccCC--ee
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF-GFVSFKDPQDFIRANKEMNEFPHLFVGD--LK 161 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~~~~--~~ 161 (170)
+.-..|||+||++.+++++|+++|++||.|..|.+..+. +|+ |||+|.+.++|.+|++.||| ..+.| +.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG---~~i~g~~~~ 97 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDG---QNIYNACCT 97 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTT---CEEETTEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCC---CeecCCCcE
Confidence 445688999999999999999999999999999887643 577 99999999999999999999 88877 99
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
|+|.|+..
T Consensus 98 LrI~~ak~ 105 (130)
T 3zzy_A 98 LRIDFSKL 105 (130)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 99999864
No 208
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=101.49 Aligned_cols=68 Identities=29% Similarity=0.541 Sum_probs=63.9
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEE-EEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i-~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+.++|||+|||+++++++|+++|+.||.|.++ .+++++.++.+++||||+|.+.++|.+|+..+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 457899999999999999999999999999999 99999889999999999999999999999988863
No 209
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=101.37 Aligned_cols=70 Identities=31% Similarity=0.563 Sum_probs=64.1
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+.+.++|||+|||+++++++|+++|+.||.|.++.++.+ ++.+++||||+|.+.++|.+|+..+++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 344557889999999999999999999999999999999998 7899999999999999999999988863
No 210
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=1.7e-16 Score=104.09 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=67.9
Q ss_pred CceEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 87 DFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 87 ~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..+|||+|||+. +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|++.||+ ..++|+.|+|.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g---~~~~g~~l~V~ 95 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENG---RVLAGQTLDIN 95 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTT---CEETTEECCEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC---CEECCeEEEEE
Confidence 479999999999 999999999999999999988 478999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9863
No 211
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=100.81 Aligned_cols=70 Identities=31% Similarity=0.535 Sum_probs=63.6
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.+.++|||+|||+++++++|+++|+.||.|.++.+++++ ++.+++||||+|.+.++|.+|+..+++.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999999997 4899999999999999999999988863
No 212
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=103.65 Aligned_cols=68 Identities=31% Similarity=0.627 Sum_probs=63.9
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..+.++|||+|||.++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+..+++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g 70 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNG 70 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999999999997 899999999999999999999999886
No 213
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=9.9e-17 Score=103.58 Aligned_cols=72 Identities=24% Similarity=0.487 Sum_probs=59.7
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC-CCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK-RTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~-~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+.......++|||+|||.++++++|+++|+.|| |.++.+++++ .+|.++|||||+|.+.++|.+|+ .+++.
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 3444556688999999999999999999999999 9999999987 58999999999999999999999 88863
No 214
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=101.60 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..++|||+|||+.+++++|+++|++||.|..+ .++.++.. |.|||+|.+.++|.+|+..||| ..++|++|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g---~~~~g~~l~V 86 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNG---FQLENFTLKV 86 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTT---CBCSSCBCEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCC---CEECCcEEEE
Confidence 35799999999999999999999999999999 47777532 3499999999999999999999 9999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 87 ~~a~~ 91 (96)
T 2e44_A 87 AYIPD 91 (96)
T ss_dssp EECCC
T ss_pred EEcCc
Confidence 99875
No 215
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=4.1e-16 Score=101.70 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=65.1
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.....+.++|||+|||+++++++|+++|+.||.|.++.++.++ +|.+++||||+|.+.++|.+|+..+++.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3445567899999999999999999999999999999999997 9999999999999999999999998863
No 216
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=3.2e-16 Score=102.77 Aligned_cols=69 Identities=17% Similarity=0.406 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..+++.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 345688999999999999999999999999999999999888999999999999999999999998863
No 217
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-16 Score=109.39 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=72.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEee
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSIT 167 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~ 167 (170)
++|||+|||+++++++|+++|+.||.|..+.+.+++ .+.++|+|||+|.+.++|.+|++.+|| ..++|+.|+|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~---~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNG---KQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTT---CEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCC---CccCCCeeEEEEc
Confidence 479999999999999999999999999999999887 577899999999999999999999999 9999999999987
Q ss_pred cc
Q psy7847 168 LK 169 (170)
Q Consensus 168 ~~ 169 (170)
..
T Consensus 77 ~~ 78 (166)
T 3md3_A 77 FQ 78 (166)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 218
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=109.42 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCC--CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..++|||+|||+++++++|+++|+.|| .|.+++++.++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng 121 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG 121 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 457999999999999999999999999 999999999999999999999999999999999999986
No 219
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=106.20 Aligned_cols=70 Identities=24% Similarity=0.385 Sum_probs=65.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.++...++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 106 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG 106 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999999999999988899999999999999999999999886
No 220
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=101.62 Aligned_cols=69 Identities=33% Similarity=0.523 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+..+.++|||+|||+++++++|+++|+.||.|.++.+++++.++.+++||||+|.+.++|.+|+.. ++
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 3455678999999999999999999999999999999999988899999999999999999999987 54
No 221
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=3.8e-16 Score=108.86 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=67.9
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC--eeEEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD--LKTRSS 165 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~--~~i~v~ 165 (170)
.+|||+||++.+++++|+++|++||.|..|.+..+. ++|+|||+|.+.++|.+|++.||| ..+.+ +.|+|.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG---~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDG---QNIYNACCTLRID 119 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTT---BCSSSSCSCEEEE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCC---CEecCCCcEEEEE
Confidence 578999999999999999999999999999886542 578999999999999999999999 88855 999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+..
T Consensus 120 ~Ak~ 123 (164)
T 1sjr_A 120 FSKL 123 (164)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 222
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=7.6e-16 Score=96.16 Aligned_cols=79 Identities=9% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----CceEEecCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFRLFCGDLG 96 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----~~~l~v~nlp 96 (170)
.+..|+|+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.+|+ .++|.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~--- 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE--- 76 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE---
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE---
Confidence 367899999999999999999999999999999865 579999999999999999999996 3566653
Q ss_pred CCCCHHHHHHHhc
Q psy7847 97 NDVTDELLIRTFS 109 (170)
Q Consensus 97 ~~~~~~~l~~~f~ 109 (170)
.+++.++..+|+
T Consensus 77 -~A~e~~~~~~~~ 88 (89)
T 2wbr_A 77 -SPSENEVQSIMQ 88 (89)
T ss_dssp -CCCHHHHHHHHC
T ss_pred -ECCHHHHHHHhh
Confidence 237888888875
No 223
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.2e-16 Score=100.22 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.|| |.++.+++++.++.++|||||+|.+.++|.+|+ .+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 3445678999999999999999999999997 999999999888999999999999999999999 7876
No 224
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=6.2e-16 Score=105.35 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=65.7
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....+.++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 33455678999999999999999999999999999999999988899999999999999999999998885
No 225
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=100.74 Aligned_cols=66 Identities=26% Similarity=0.514 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC-CCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~-~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||+++++++|+++|+.|| |.++.+++++.+ |.++|||||+|.+.++|.+|+ .+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 78 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE 78 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC
Confidence 34568999999999999999999999999 999999999877 899999999999999999999 8876
No 226
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=103.72 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=63.7
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCe-eEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSF-LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v-~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+...+.+.++|||+|||+++++++|+++|+.||.+ .++.++.++ +|.++|||||+|.+.++|.+|+.. ++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~ 78 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR 78 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 33456678899999999999999999999999999 899999997 999999999999999999999977 54
No 227
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.1e-17 Score=111.46 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=69.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEE--------EEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA--------KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV 157 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~--------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 157 (170)
...+|||+|||+.+++++|+++|+.||.|..+ .+. .++.++|||||+|.+.++|.+|+..||| ..+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng---~~~ 117 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANG---YVL 117 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTT---BEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCC---CEe
Confidence 35799999999999999999999999998763 222 2577899999999999999999999999 999
Q ss_pred CCeeEEEEeecc
Q psy7847 158 GDLKTRSSITLK 169 (170)
Q Consensus 158 ~~~~i~v~~~~~ 169 (170)
+|++|+|.++..
T Consensus 118 ~g~~l~V~~a~~ 129 (143)
T 3egn_A 118 FGKPMVVQFARS 129 (143)
T ss_dssp TTEECEEEECCC
T ss_pred CCcEEEEEECCC
Confidence 999999999864
No 228
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-16 Score=99.64 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=62.6
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
.....+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34445678999999999999999999999999999999999988899999999999999999999984
No 229
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=100.38 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCC---CCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~---~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++. ++.+++||||+|.+.++|.+|+..+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999999999999875 5588999999999999999999998863
No 230
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-16 Score=102.09 Aligned_cols=71 Identities=25% Similarity=0.293 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCee--------EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFL--------KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~--------~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+..+.++|||+|||.++++++|+++|+.||.|. .++++.++.++.++|||||+|.+.++|.+|+..+++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3445678999999999999999999999999998 6999999889999999999999999999999998863
No 231
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=1.4e-15 Score=101.82 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
......++|||+|||.++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|.+|+..+++
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 98 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG 98 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCC
Confidence 345667899999999999999999999999999999999998 899999999999999999999998886
No 232
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=100.38 Aligned_cols=69 Identities=13% Similarity=0.372 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+.++|||+|||+++++++|+++|+.||.|.++++++++ ++.++|||||+|.+.++|.+|+..+++.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34567899999999999999999999999999999999997 8999999999999999999999998864
No 233
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=5.5e-16 Score=112.54 Aligned_cols=79 Identities=20% Similarity=0.371 Sum_probs=72.4
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.||+ ..++|+.|+|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~---~~~~g~~l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS---VMLGGRNIKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS---CCCC-CCCEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC---CeeCCeeEEEec
Confidence 46999999999999999999999999999999999988899999999999999999999999999 999999999987
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 105 ~~ 106 (216)
T 2qfj_A 105 PS 106 (216)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 234
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=6.8e-16 Score=112.05 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCceEEecCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLG-NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
...+|||+||| ..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|++.||| ..+.|++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng---~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNN---NFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTT---CEETTEECEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCC---CEECCceEEE
Confidence 45789999999 799999999999999999999998753 79999999999999999999999 9999999999
Q ss_pred Eeec
Q psy7847 165 SITL 168 (170)
Q Consensus 165 ~~~~ 168 (170)
.++.
T Consensus 75 ~~s~ 78 (205)
T 3tyt_A 75 CVSK 78 (205)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9974
No 235
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=100.67 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.....++|||+|||+++++++|+++|+.||.|.++.++.++.+|.+++||||+|.+.++|.+|+..+++.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3445688999999999999999999999999998888888888999999999999999999999999863
No 236
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=5.2e-16 Score=97.79 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=61.7
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+ .+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC
Confidence 578999999999999999999999999999999999889999999999999999999999 88863
No 237
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.4e-16 Score=104.18 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=71.0
Q ss_pred ceEEecCC----CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecC----H-HH---HHHHHH--HhcCCC
Q psy7847 88 FRLFCGDL----GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----P-QD---FIRANK--EMNEFP 153 (170)
Q Consensus 88 ~~l~v~nl----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~----~-~~---a~~a~~--~l~~~~ 153 (170)
..|+|+|| |+.+++.+|+.+|+.||.|..+.+..|+.++.++|||||+|.+ + ++ |.+|+. .+||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng-- 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG-- 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC--
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC--
Confidence 47999999 9999999999999999999999999999999999999999995 3 22 888888 7899
Q ss_pred ccccCCeeEEEEeecc
Q psy7847 154 HLFVGDLKTRSSITLK 169 (170)
Q Consensus 154 ~~~~~~~~i~v~~~~~ 169 (170)
..++|++|+|.+-..
T Consensus 81 -~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 -CFIMGFKFEVILNKH 95 (136)
T ss_dssp -EEETTEEEEEEECCT
T ss_pred -CeecCcEEEEEECcc
Confidence 999999999998653
No 238
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=96.54 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCCc------cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDV------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~------t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++|||+|||.++ ++++|+++|++||.|.++.+++ .+|.++|||||+|.+.++|.+|+..+++.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 4689999999999 7899999999999999999873 57899999999999999999999988863
No 239
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-15 Score=97.85 Aligned_cols=71 Identities=24% Similarity=0.459 Sum_probs=63.2
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
....+.+.++|||+|||+++++++|+++|+.||.|.++.++.++. .+++||||+|.+.++|.+|+..+++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 344556678999999999999999999999999999999998853 38999999999999999999988863
No 240
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=8.1e-16 Score=110.05 Aligned_cols=80 Identities=25% Similarity=0.398 Sum_probs=74.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++. ++ ..++|+.|+|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~---~~~~g~~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RP---HKVDGRVVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CS---CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CC---CEECCEEeeee
Confidence 357999999999999999999999999999999999988899999999999999999999986 88 89999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 88 ~~~~ 91 (196)
T 1l3k_A 88 RAVS 91 (196)
T ss_dssp ECCC
T ss_pred cccC
Confidence 8753
No 241
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=100.02 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE-EEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~-i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+....++|||+|||+++++++|+++|+.||.|.+ +.++.+ .+|.++|||||+|.+.++|.+|+.. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~ 78 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HK 78 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Cc
Confidence 34456789999999999999999999999999987 888888 6899999999999999999999987 54
No 242
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=103.28 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCceEEe--cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcccc-----C
Q psy7847 86 DDFRLFC--GDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFV-----G 158 (170)
Q Consensus 86 ~~~~l~v--~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~-----~ 158 (170)
...+||| +||++.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.||| ..+ .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG---~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNG---KEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTT---CEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCC---CEEccccCC
Confidence 3568999 779999999999999999999999887542 78999999999999999999999 665 6
Q ss_pred CeeEEEEeecc
Q psy7847 159 DLKTRSSITLK 169 (170)
Q Consensus 159 ~~~i~v~~~~~ 169 (170)
+++|.|.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 89999998753
No 243
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.6e-16 Score=100.26 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=57.7
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.+..+|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.+++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 4556889999999999999999999999999999999875 58999999999999999998764
No 244
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-16 Score=96.98 Aligned_cols=63 Identities=29% Similarity=0.488 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|+|||+|.+.++|.+|+..++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999999998889999999999999999999998776
No 245
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=7.7e-16 Score=103.27 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=64.1
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||+++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|++.+++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 86 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999999999988999999999999999999999999886
No 246
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3.1e-16 Score=95.83 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=58.4
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++ +++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC
Confidence 58999999999999999999999999999999998889999999999999999999997 654
No 247
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=5.5e-16 Score=97.43 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCC-cCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK-TKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~-~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..++|||+|||.++++++|+++|+.||.|.++.++.++.++. ++|+|||+|.+.++|.+|+..+++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 467999999999999999999999999999999999876665 8999999999999999999998863
No 248
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=98.43 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=66.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+++++++|+++|+.||.|..| ..++.++. ||||+|.+.++|.+|+. ||| ..++|+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g---~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQ---HSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSC---CEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCC---eEECCEEEEEE
Confidence 34699999999999999999999999999987 44544443 99999999999999999 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 78 ~a~~ 81 (94)
T 2e5g_A 78 PREQ 81 (94)
T ss_dssp CSCC
T ss_pred ECCc
Confidence 8763
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=102.82 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 72 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 72 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999999999999988899999999999999999999998886
No 250
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=97.06 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=67.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|+ .+++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g---~~~~g~~l~v~ 82 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG---TQVESVQLKVN 82 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT---EEETTEEEEEE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC---CeECCeEEEEE
Confidence 4579999995 89999999999999999999884 3588999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
|+.+
T Consensus 83 ~a~~ 86 (97)
T 1x5p_A 83 IARK 86 (97)
T ss_dssp CCSS
T ss_pred ECCC
Confidence 9865
No 251
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.6e-15 Score=98.21 Aligned_cols=70 Identities=26% Similarity=0.427 Sum_probs=62.6
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+..+.++|||+|||+++++++|+++|+.||.|.++.+++++ +.+++||||+|.+.++|.+|+..+++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g 77 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNG 77 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 34455668899999999999999999999999999999999985 33689999999999999999998886
No 252
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=100.19 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
......++|||+|||.++++++|+++|+.||.|.++.++.++ ++.+++||||+|.+.++|.+|+..+++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999999997 6999999999999999999999988863
No 253
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=96.26 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=63.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
...+|||+|||+++++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+ +++. ...++|+.|+|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~-~~~~~g~~v~v~ 79 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGE-DLIIKGISVHIS 79 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTC-EEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCC-CcccCCEEEEEE
Confidence 4579999999999999999999999999999998775 68999999999999883 5663 345679999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 9864
No 254
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2.6e-16 Score=100.45 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+...++|||+|||+++++++|+++|+.||.|.++.++.++.++.+++||||+|.+.++|.+|++.+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334689999999999999999999999999998999998888999999999999999999999988863
No 255
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=4.3e-16 Score=103.13 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=65.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee-----
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK----- 161 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~----- 161 (170)
.++|||+|||+.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|++.||| ..++|+.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g---~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN---TKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTT---CBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCC---CEECCcEeeeEE
Confidence 478999999999999999999999999999998764 8999999999999999999999 9999988
Q ss_pred EEEEeec
Q psy7847 162 TRSSITL 168 (170)
Q Consensus 162 i~v~~~~ 168 (170)
|+|..+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 6666543
No 256
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2.7e-16 Score=106.96 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=68.1
Q ss_pred ccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 12 WIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 12 ~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+..+..+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+..+++
T Consensus 37 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 111 (135)
T 2lea_A 37 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 111 (135)
T ss_dssp SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT
T ss_pred cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 344555566678999999999999999999999999999999999988899999999999999999999998886
No 257
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=2.2e-15 Score=98.13 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCceEEecCCCC-----CCCHHHHHHHhccCCCeeEEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 86 DDFRLFCGDLGN-----DVTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 86 ~~~~l~v~nlp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
...+|++.|+.. +-++++|++.|++||.|..+.+++++. .+.++|+|||+|.+.++|.+|++.||| ..++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG---~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG---RYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT---CEETT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC---CEECC
Confidence 457899999863 237899999999999999999998864 367899999999999999999999999 99999
Q ss_pred eeEEEEeecc
Q psy7847 160 LKTRSSITLK 169 (170)
Q Consensus 160 ~~i~v~~~~~ 169 (170)
+.|+|+++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 258
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.9e-16 Score=100.37 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
...+...++|||+|||+++++++|+++|+.||.+ ++.+++++ +|+++|||||+|.+.++|.+|++ +++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDK 76 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCC
Confidence 3445667899999999999999999999999954 99999997 89999999999999999999995 454
No 259
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=100.95 Aligned_cols=72 Identities=24% Similarity=0.434 Sum_probs=64.1
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+..+....++|||+|||.++++++|+++|+.||.|.++.+++++ +.++|||||+|.+.++|.+|+..+++.
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 455556678899999999999999999999999999999999885 458999999999999999999988863
No 260
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=103.14 Aligned_cols=64 Identities=28% Similarity=0.489 Sum_probs=60.6
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
.+.++|||+|||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 3457899999999999999999999999999999999988899999999999999999999976
No 261
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.6e-15 Score=100.39 Aligned_cols=73 Identities=11% Similarity=0.088 Sum_probs=65.0
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhcCCCccccCC--eeEEE
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF-GFVSFKDPQDFIRANKEMNEFPHLFVGD--LKTRS 164 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~~~~~--~~i~v 164 (170)
..|||+||++.+++++|+++|++||.|..+.+.. + .|+ |||+|.+.++|..|++.||| ..+.| +.|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG---~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNG---ADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTT---CCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCC---CEecCCCeEEEE
Confidence 3578999999999999999999999999998864 2 285 99999999999999999999 88766 69999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.+|.+
T Consensus 97 ~~Ak~ 101 (124)
T 2e5i_A 97 EYARP 101 (124)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 99864
No 262
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=100.99 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=59.4
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....++|||+|||+++++++|+++|+.| .|.+|.++.++ +|+++|||||+|.+.++|.+|+ .+++
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCC
Confidence 34446799999999999999999999999 79999999996 5999999999999999999999 5664
No 263
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=2.1e-16 Score=105.81 Aligned_cols=65 Identities=20% Similarity=0.375 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+ .+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC
Confidence 4679999999999999999999999999999999999889999999999999999999999 7776
No 264
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.5e-15 Score=105.53 Aligned_cols=68 Identities=26% Similarity=0.311 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++.++.+++||||+|.+.++|.+|+..+++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 103 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999988899999999999999999999999886
No 265
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1.9e-15 Score=95.77 Aligned_cols=66 Identities=29% Similarity=0.419 Sum_probs=61.2
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+++|+.||.|.++.++++ ++.+++||||+|.+.++|.+|+..+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNG 70 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 345789999999999999999999999999999999884 788999999999999999999998886
No 266
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=9.2e-16 Score=101.97 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCC---eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
......++|||+|||+++++++|+++|+.||. |.+++++.++. |+++|||||+|.+.++|.+|+. +++
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 34456789999999999999999999999998 89999999974 9999999999999999999998 775
No 267
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=103.81 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
......++|||+|||+++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|+. +++
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g 88 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHK 88 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCC
Confidence 345567899999999999999999999999999886666666789999999999999999999998 775
No 268
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=98.96 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=61.5
Q ss_pred CCCCCCcEEEEcCCCCCc------cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDV------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~------t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...+++|||+|||.++ ++++|+++|+.||.|.++.+++ .+|.++|||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 344457899999999999 8899999999999999999883 5789999999999999999999999886
No 269
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=95.46 Aligned_cols=70 Identities=21% Similarity=0.125 Sum_probs=62.7
Q ss_pred Cce-EEecCCCCCCCHHH----HHHHhccCC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 87 DFR-LFCGDLGNDVTDEL----LIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 87 ~~~-l~v~nlp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
..+ |||+|||..+++++ |+++|++|| .|..| ++ |+|||.|.+.++|.+|++.||| ..+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G---~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMEN---EDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT---CCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC---CccCCc
Confidence 344 99999999999888 668999994 99888 22 9999999999999999999999 999999
Q ss_pred eEEEEeecc
Q psy7847 161 KTRSSITLK 169 (170)
Q Consensus 161 ~i~v~~~~~ 169 (170)
+|+|++|..
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 999999864
No 270
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=100.80 Aligned_cols=64 Identities=14% Similarity=0.349 Sum_probs=58.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|.+|++.|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 457899999999999999999999999999 877777655 6899999999999999999999984
No 271
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.6e-15 Score=105.52 Aligned_cols=68 Identities=29% Similarity=0.410 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||+++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 134 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 134 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 34578999999999999999999999999999999999988999999999999999999999999886
No 272
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-15 Score=95.36 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=61.5
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...++|||+|||+++++++|+++|+.| .|.++.++++ .+|.++|+|||+|.+.++|.+|+. +++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCC
Confidence 44567899999999999999999999999 8999999999 689999999999999999999999 886
No 273
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=2.5e-15 Score=105.45 Aligned_cols=83 Identities=20% Similarity=0.340 Sum_probs=72.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN--KTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
..++|||+|||+++++++|+++|++||.|..+.+++++..+ .++|||||+|.+.++|.+|++.||+.......++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35789999999999999999999999999999999998665 7899999999999999999999999433333367888
Q ss_pred EEeec
Q psy7847 164 SSITL 168 (170)
Q Consensus 164 v~~~~ 168 (170)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77764
No 274
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=1.1e-15 Score=102.49 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=59.4
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCee--EEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFL--KAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~--~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
..++.+.++|||+|||+++|+++|+++|+.| .+. +|+++.++. |+++|||||+|.+.++|.+|++.
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH
Confidence 3445667899999999999999999999999 566 899999975 99999999999999999999975
No 275
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=7.6e-16 Score=104.79 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCC---eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+++.+.++|||+|||+++|+++|+++|+.||. |.+|++++++. |+++|||||+|.+.++|.+|++ +++
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 34556789999999999999999999999999 89999999975 9999999999999999999998 774
No 276
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.4e-15 Score=95.34 Aligned_cols=70 Identities=19% Similarity=0.384 Sum_probs=64.8
Q ss_pred CceEEecCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcc
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKY----P-------SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 155 (170)
.++|||+|||+.+++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .||| .
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g---~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG---I 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT---C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC---C
Confidence 4699999999999999999999999 8 8999988654 799999999999999999 9999 9
Q ss_pred ccCCeeEEEEe
Q psy7847 156 FVGDLKTRSSI 166 (170)
Q Consensus 156 ~~~~~~i~v~~ 166 (170)
.++|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 277
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=100.47 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=58.2
Q ss_pred cCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 15 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
......++++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.++
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhc
Confidence 3444556889999999999999999999999999999999875 5899999999999999998765
No 278
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=7.5e-16 Score=100.62 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCC---eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPS---FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~---v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+....++|||+|||+++++++|+++|+.||. |.++.++.++. |.++|||||+|.+.++|.+|+. +++
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHR 76 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCc
Confidence 44566889999999999999999999999887 89999999975 9999999999999999999998 665
No 279
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.5e-15 Score=95.76 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....+.++|||+|||.++++++|+++|+.||.|.++.+.. ++.+++||||+|.+.++|.+|++.+++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 34455678999999999999999999999999999999955 456899999999999999999999886
No 280
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=97.37 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
..++|||+|||+.+++++|+++|++||. +..+.+. ++|||||+|.+.++|.+|++.|||. ..++|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~--~~~~g~~l~v 77 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGK--VELHGKIMEV 77 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTT--CEETTEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCC--eeECCEEEEE
Confidence 3578999999999999999999999999 6665552 3789999999999999999999982 4678999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.++.+
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99865
No 281
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=97.07 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.....++++|||+|||.++++++|+++|++||.|.++++++. +|+|||+|.+.++|..|+..+++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcC
Confidence 334557889999999999999999999999999999999753 58999999999999999998764
No 282
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=100.17 Aligned_cols=65 Identities=14% Similarity=0.364 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC---CCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT---NKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~---~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
....++|||+|||+++++++|+++|+.||.|. +.++.++.+ |.++|||||+|.+.++|.+|++.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34578999999999999999999999999999 888877766 799999999999999999999988
No 283
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=4.1e-16 Score=100.87 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHH
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~ 82 (170)
....++|||+|||.++++++|+++|+.||.|.++.++.++ +|.++|||||+|.+.++|.+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 3346889999999999999999999999999999999998 99999999999999999999998
No 284
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=98.27 Aligned_cols=66 Identities=21% Similarity=0.373 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCC-eeEEEEE-ecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVV-RDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~-v~~i~~~-~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
.+.++|||+|||.++++++|+++|+.||. |.++.++ .++.+|.++|||||+|.+.++|.+|+..++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 35789999999999999999999999998 9999998 787788999999999999999999999885
No 285
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=5.2e-16 Score=98.11 Aligned_cols=64 Identities=27% Similarity=0.528 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.+ |.+|+..+++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999998863
No 286
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=2.3e-15 Score=105.03 Aligned_cols=77 Identities=26% Similarity=0.495 Sum_probs=71.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+++++++|+++|+.||.|..+.+.+++.++.++|||||+|.+.++|.+|++. + ..++|+.|.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~---~~~~g~~i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q---HILDGKVIDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C---CEETTEECCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c---cccCCeEccccc
Confidence 46899999999999999999999999999999999988899999999999999999999994 5 678899998887
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 78 ~~ 79 (167)
T 2cjk_A 78 AI 79 (167)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 287
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=95.39 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHH----HHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+ ++|+.||.|.++.++.++.+ ++||||+|.+.++|.+|+..+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC
Confidence 3456789999999999999999 99999999999999988644 88999999999999999999986
No 288
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.6e-15 Score=95.93 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..++++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|..|++.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 345789999999999999999999999999999988764 6899999999999999998764
No 289
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=6.3e-15 Score=95.79 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
...++++|||+|||.++++++|+++|++||.|.++.++++ ++||||+|.+.++|.+|++.++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAA 72 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999998764 6899999999999999998765
No 290
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=100.77 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=60.1
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.......+.++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..+++
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 17 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 3344455678999999999999999999999999885443322223788999999999999999999999886
No 291
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=5.2e-15 Score=103.80 Aligned_cols=67 Identities=18% Similarity=0.417 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 4467899999999999999999999999999999999988999999999999999999999999986
No 292
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=6.5e-15 Score=98.29 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEE
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v 164 (170)
....+|||+|+ ++++++|+++|++||.|..+.+. .++|||||+|.+.++|.+|+..||| ..++|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng---~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG---TQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTT---CBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCC---CEECCeEEEE
Confidence 45679999995 69999999999999999999885 3589999999999999999999999 8999999999
Q ss_pred Eeecc
Q psy7847 165 SITLK 169 (170)
Q Consensus 165 ~~~~~ 169 (170)
.|+.+
T Consensus 106 ~~a~~ 110 (121)
T 2bz2_A 106 NIARK 110 (121)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 99875
No 293
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=7.4e-16 Score=94.07 Aligned_cols=60 Identities=25% Similarity=0.521 Sum_probs=57.6
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
+|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 589999999999999999999999999999999988899999999999999999999975
No 294
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=96.66 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=56.4
Q ss_pred CCCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..++++|||+|||+ ++++++|+++|++||.|.++.++++ ++||||+|.+.++|..|++.+++
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcC
Confidence 34678999999999 9999999999999999999999865 37999999999999999998764
No 295
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=98.16 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCccHHHHH---HHhhcCCCeeEEEEEecCCCC---CcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLI---RTFSKYPSFLKAKVVRDKRTN---KTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~---~~f~~~g~v~~i~~~~~~~~~---~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...+.++|||+|||+++++++|+ ++|++||.|.++.+++++.++ .++|||||+|.+.++|.+|++.+++.
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 34457799999999999999999 999999999999999887654 45699999999999999999998863
No 296
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=95.53 Aligned_cols=74 Identities=22% Similarity=0.296 Sum_probs=64.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+.+++++|+++|++||.|..+.+.++ ++|||||+|.+.++|++| ++. ...+++++|+|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~-~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGE-DLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTC-EEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcC-CceeCCEEEEEE
Confidence 4579999999999999999999999999999998765 589999999999999754 552 356799999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++.+
T Consensus 74 ~a~~ 77 (88)
T 1wf0_A 74 NAEP 77 (88)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9865
No 297
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=7.4e-15 Score=105.62 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=70.5
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEe
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~ 166 (170)
.++|||+|||+.+++++|+++|++||.|..+.++++. .+.++|+|||+|.+.++|.+|+..+ + ..++|++|+|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~---~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-G---QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-T---CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-C---CeECCEEEEEEE
Confidence 3689999999999999999999999999999999887 5889999999999999999999855 4 579999999998
Q ss_pred ec
Q psy7847 167 TL 168 (170)
Q Consensus 167 ~~ 168 (170)
+.
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 64
No 298
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=101.87 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCe----eEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSF----LKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v----~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
....++|||+|||+++|+++|+++|+.||.| .+|.++.++ +|+++|||||+|.+.++|.+|++.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 4567899999999999999999999999975 689999984 899999999999999999999975
No 299
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=97.88 Aligned_cols=59 Identities=31% Similarity=0.604 Sum_probs=54.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+|||+|||+++++++|+++|+.||.|.++.++.+ +++||||+|.+.++|.+|+..+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCC
Confidence 47999999999999999999999999999999876 679999999999999999997764
No 300
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=94.77 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=56.9
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||+++++++|+++|+.||.|.++.++.+ +||||+|.+.++|.+|++.+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g 72 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc
Confidence 345789999999999999999999999999999999875 8999999999999999999986
No 301
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=4.7e-16 Score=100.43 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=59.8
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...++|||+|||.++++++|+++|+.||.+.. .++.++.+|.++|||||+|.+.++|.+|++ +++
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g 79 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG 79 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCC
Confidence 4456789999999999999999999999998877 666666678999999999999999999998 875
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=3.2e-15 Score=110.23 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCC--CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYP--SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g--~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..++|||+|||+++|+++|+++|+.|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.+++.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 456899999999999999999999999 9999999999989999999999999999999999988864
No 303
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=8.8e-15 Score=95.73 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=57.0
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.....+...++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..+++.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 344556678899999999999999999999999999999987 589999999999999999998863
No 304
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=1.3e-14 Score=109.57 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCCceEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 85 NDDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
...++|||+|||+.+++++|+ ++|+.||.|..|.+.+ ++.++|||||+|.+.++|.+|++.||| ..+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g---~~~~g~ 80 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG---FPFYDK 80 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC---CeeCCc
Confidence 446799999999999999966 8999999999998875 577899999999999999999999999 999999
Q ss_pred eEEEEeecc
Q psy7847 161 KTRSSITLK 169 (170)
Q Consensus 161 ~i~v~~~~~ 169 (170)
.|+|.|+..
T Consensus 81 ~l~v~~a~~ 89 (282)
T 3pgw_A 81 PMRIQYAKT 89 (282)
T ss_pred EEEEEEecc
Confidence 999999854
No 305
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=92.28 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=57.0
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.+.++|||+|||.++++++|+++|+.||.|.++.+..+ ++||||+|.+.++|.+|++.+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC
Confidence 3445789999999999999999999999999999988754 68999999999999999998885
No 306
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.9e-15 Score=94.33 Aligned_cols=66 Identities=26% Similarity=0.349 Sum_probs=58.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.||.| +++.+ .++.+++||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g 75 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 75 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC
Confidence 345568999999999999999999999999966 56666 5789999999999999999999998886
No 307
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=6.8e-15 Score=108.70 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=69.3
Q ss_pred CCCceEEecCCCCCC---------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCcc
Q psy7847 85 NDDFRLFCGDLGNDV---------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 155 (170)
....+|||+||+..+ ++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|++.||| .
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g---~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSN---Q 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTT---C
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCC---C
Confidence 456799999999998 79999999999999999999854 79999999999999999999999 7
Q ss_pred cc------------CCeeEEEEeecc
Q psy7847 156 FV------------GDLKTRSSITLK 169 (170)
Q Consensus 156 ~~------------~~~~i~v~~~~~ 169 (170)
.+ .|+.|.|.||..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EEeccccccccccCCCCEEEEEEccC
Confidence 77 899999999864
No 308
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=97.86 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCCCCCccHHHHH----HHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..+.++|||+|||+++++++|+ ++|++||.|.+|.+.+ ++.++|||||+|.+.++|..|+..+++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCC
Confidence 34557899999999999999876 6999999999987753 678999999999999999999999987
No 309
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=93.81 Aligned_cols=70 Identities=33% Similarity=0.554 Sum_probs=62.0
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...+.+.++|||+|||.++++++|+++|+.|+ .+.++.++.++.+++||||+|.+.++|.+|+..+++
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 76 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 3445556788999999999999999999999774 788888888899999999999999999999999886
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.9e-15 Score=103.19 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+...++|||+|||+++|+++|+++|+.|| +.+|.++.++ +|.++|||||+|.+.++|.+|+ .+++
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g 107 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDR 107 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCC
Confidence 3455678999999999999999999999999 6799999997 4999999999999999999999 5664
No 311
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-14 Score=90.39 Aligned_cols=61 Identities=23% Similarity=0.485 Sum_probs=56.3
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.+.++|||+|||.++++++|+++|+.||.|.++.++ ++||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999987 47999999999999999998886
No 312
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1e-14 Score=107.36 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=71.1
Q ss_pred CCCceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 85 NDDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 85 ~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
+...+|||+|||+ .+++++|+++|+.||.|..+.+.+++ +|||||+|.+.++|.+|++.||| ..++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g---~~~~g~~l~ 103 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG---HKLHGKPIR 103 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTT---CBCSSSBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCC---CeECCeEEE
Confidence 3467999999999 99999999999999999999998875 78999999999999999999999 999999999
Q ss_pred EEeec
Q psy7847 164 SSITL 168 (170)
Q Consensus 164 v~~~~ 168 (170)
|.++.
T Consensus 104 v~~a~ 108 (229)
T 2adc_A 104 ITLSK 108 (229)
T ss_dssp EECCS
T ss_pred EEEec
Confidence 99885
No 313
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.4e-14 Score=89.31 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=57.4
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc-CC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM-ND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~-~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.||.|.++.++++ +++|||+|.+.++|.+|+..+ ++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~ 71 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC
Confidence 34456789999999999999999999999999999999874 589999999999999999988 54
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=102.61 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+...++|||+|||+++++++|+++|+.||.|.+|.+..++ ++.++|||||+|.+.++|.+|+..+++.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 4456899999999999999999999999999999999997 8999999999999999999999988863
No 315
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.2e-14 Score=91.13 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+...++|||+|||+++++++|+++|+.||.|. +.++.+ .+++||||+|.+.++|.+|+..+++.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3445578999999999999999999999999986 666653 67899999999999999999998863
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=91.76 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=49.8
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHH
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~ 79 (170)
..+.+.++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|.+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 34556789999999999999999999999999999999864 78999999999999984
No 317
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.55 E-value=1.2e-14 Score=95.44 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...++|||+|||+++++++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|.+|++.+++
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng 89 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNN 89 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCC
Confidence 355678999999999999999999999999 899988853 35789999999999999999999986
No 318
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=92.15 Aligned_cols=65 Identities=29% Similarity=0.420 Sum_probs=58.4
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
....+.++|||+|||+++++++|+++|+.||.|.++.+.++ ++||||+|.+.++|.+|++.+++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 34456789999999999999999999999999999999854 589999999999999999998863
No 319
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.5e-14 Score=91.48 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=57.7
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+...++|||+|||.++++++|+++|+.||.|.++++. .++|||||+|.+.++|.+|+..+++
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g 85 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALAN 85 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCC
Confidence 334557899999999999999999999999999999987 3468999999999999999999886
No 320
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=9.6e-15 Score=104.84 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=70.1
Q ss_pred CceEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 87 DFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 87 ~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
.++|||+|||+ .+++++|+++|+.||.|..+.+.+++ +|||||+|.+.++|.+|+..||| ..++|++|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~---~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG---HKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTT---CCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC---CeecCeEEEEE
Confidence 46899999999 99999999999999999999998764 78999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 75 ~a~~ 78 (198)
T 1qm9_A 75 LSKH 78 (198)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8853
No 321
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=4e-14 Score=90.75 Aligned_cols=64 Identities=30% Similarity=0.526 Sum_probs=55.9
Q ss_pred CCCCCCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 16 TCEDENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.....+.++|||+|||. ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..+++.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 33345678999999998 99999999999999999999883 689999999999999999988863
No 322
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.9e-14 Score=92.81 Aligned_cols=80 Identities=15% Similarity=0.028 Sum_probs=68.3
Q ss_pred CceEEecCC--CCCCC--------HHHHHHHhccCCCeeEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 87 DFRLFCGDL--GNDVT--------DELLIRTFSKYPSFLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 87 ~~~l~v~nl--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
.++|.+.|+ |.... +++|++.|++||.|..+.+++++.. +.++|+|||+|.+.++|.+|++.|||
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG--- 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG--- 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT---
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC---
Confidence 457788887 33332 4799999999999999999988743 35799999999999999999999999
Q ss_pred cccCCeeEEEEeecc
Q psy7847 155 LFVGDLKTRSSITLK 169 (170)
Q Consensus 155 ~~~~~~~i~v~~~~~ 169 (170)
..++|++|+|++...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999764
No 323
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.1e-16 Score=102.75 Aligned_cols=69 Identities=26% Similarity=0.351 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeE--------EEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLK--------AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~--------i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..+.++|||+|||.++++++|+++|+.||.|.+ +.++.++.++.++|||||+|.+.++|.+|+..+++
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 3456789999999999999999999999999998 89999988899999999999999999999998886
No 324
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.2e-15 Score=97.16 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=61.1
Q ss_pred cCCCCCCCHHHHHHHh------------ccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe
Q psy7847 93 GDLGNDVTDELLIRTF------------SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL 160 (170)
Q Consensus 93 ~nlp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 160 (170)
.+||..+++++|++.| ++||.|..+.+.++. .+.++|+|||+|.+.++|.+|+..||| ..++|+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng---~~~~Gr 96 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNN---RWFNGQ 96 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTT---CEETTE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCC---CEECCE
Confidence 3455556666665555 999999999999876 478899999999999999999999999 999999
Q ss_pred eEEEEee
Q psy7847 161 KTRSSIT 167 (170)
Q Consensus 161 ~i~v~~~ 167 (170)
+|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 325
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=94.08 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCCcEEEEcCCCCC-ccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 19 DENDFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~-~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
..++++|||+|||++ +++++|+++|++||.|.++.+++ +++||||+|.+.++|..|++.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~ 83 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhc
Confidence 556889999999998 99999999999999999999974 36899999999999999998765
No 326
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=89.61 Aligned_cols=62 Identities=18% Similarity=0.465 Sum_probs=56.4
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.||.|.++.+++ +||||+|.+.++|.+|+..+++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g 66 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC
Confidence 4455678999999999999999999999999999999873 3999999999999999999886
No 327
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=8.4e-15 Score=93.68 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcCCCCCccHHHHH----HHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLI----RTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~----~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+..++++|||+|||.++++++|+ ++|+.||.|.++.+.+ +|.++|||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 34567899999999999999999 9999999999998873 567889999999999999999999887
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=5e-14 Score=90.03 Aligned_cols=62 Identities=31% Similarity=0.502 Sum_probs=54.6
Q ss_pred CCCCCCcEEEEcCCCC-CccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGN-DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~-~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+..+.++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|..|+..+++
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g 67 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQ 67 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC
Confidence 3455688999999998 99999999999999999999984 58999999999999999999886
No 329
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.8e-14 Score=92.65 Aligned_cols=63 Identities=25% Similarity=0.583 Sum_probs=58.3
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+...++|||+|||.++++++|+++|+.||.|.++.++++ ++||||+|.+.++|.+|+..+++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCC
Confidence 4556789999999999999999999999999999999876 68999999999999999999886
No 330
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.1e-14 Score=91.90 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCceEEecCCCCCCC-----------HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCc
Q psy7847 86 DDFRLFCGDLGNDVT-----------DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPH 154 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 154 (170)
...+|+|.||..... +++|+++|++||.|..+.+ .++ .++|+|||+|.+.++|.+|+..|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng--- 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG--- 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT---
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC---
Confidence 357899999944332 6899999999999999966 443 3799999999999999999999999
Q ss_pred cccCCeeEEEEeecc
Q psy7847 155 LFVGDLKTRSSITLK 169 (170)
Q Consensus 155 ~~~~~~~i~v~~~~~ 169 (170)
..++|++|+|.++.+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999865
No 331
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=4.1e-14 Score=99.10 Aligned_cols=70 Identities=21% Similarity=0.325 Sum_probs=64.9
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+...++|||+|||.++++++|+++|+.||.|.++.+.+++.+|.++|+|||+|.+.++|.+|+..+++.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 3445789999999999999999999999999999999999888999999999999999999999998873
No 332
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=88.13 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||.++++++|+++|+.||.|.+| +.++.+|. ||||+|.+.++|.+|+. +++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCC
Confidence 3456799999999999999999999999999987 55554554 99999999999999999 876
No 333
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=5.2e-14 Score=97.11 Aligned_cols=66 Identities=32% Similarity=0.548 Sum_probs=59.7
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.......++|||+|||+++++++|+++|+.||.|.+++++++ ++|||||+|.+.++|.+|+..+++
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g 132 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDG 132 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCC
Confidence 334456789999999999999999999999999999999875 579999999999999999999886
No 334
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.8e-14 Score=89.01 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=56.3
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.+.++|||+|||.++++++|+++|+.||.|.++.+++ +||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC
Confidence 3455678999999999999999999999999999999974 3899999999999999999886
No 335
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=5.7e-14 Score=105.26 Aligned_cols=75 Identities=27% Similarity=0.432 Sum_probs=69.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.|..+.+.++ +|||||+|.+.++|.+|+..+|| ..++|+.|+|.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g---~~i~g~~l~v~ 91 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDG---TILKSRPLRIR 91 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTT---CEETTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCC---cEECCceeEee
Confidence 3569999999999999999999999999999988653 78999999999999999999999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 336
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=93.40 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCCcEEEE--cCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCc
Q psy7847 19 DENDFRLFC--GDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88 (170)
Q Consensus 19 ~~~~~~v~v--~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~ 88 (170)
..+.++||| +|||.++++++|+++|++||.|.++.++. .+|||||+|.+.++|.+|++.+|+..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345778999 77999999999999999999999988754 26899999999999999999999853
No 337
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=4.9e-15 Score=104.26 Aligned_cols=79 Identities=24% Similarity=0.293 Sum_probs=68.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEE
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~ 165 (170)
..++|||+|||+++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|++ ||| ..++|++|+|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g---~~~~g~~l~v~ 86 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTG---LKVFGNEIKLE 86 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGG---EEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCC---CEeCCeEEEEe
Confidence 4679999999999999999999999987665 233344467789999999999999999995 999 99999999999
Q ss_pred eecc
Q psy7847 166 ITLK 169 (170)
Q Consensus 166 ~~~~ 169 (170)
++..
T Consensus 87 ~~~~ 90 (175)
T 1fje_B 87 KPKG 90 (175)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 338
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=93.46 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..++|||+|||+++++++|+++|+.||.|.++.++. +++||||+|.+.++|.+|+..+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999998864 4689999999999999999999873
No 339
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=8.4e-14 Score=91.15 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=55.1
Q ss_pred CCCCcEEEEcCCCCC-ccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~-~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....++|||+|||++ +++++|+++|+.||.|.++.+ +++||||+|.+.++|.+|+..+++
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 334589999999999 999999999999999999988 468999999999999999999886
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=6.7e-14 Score=112.05 Aligned_cols=69 Identities=25% Similarity=0.458 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+..+|||+|||+++|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..+|+.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 344679999999999999999999999999999999999889999999999999999999999999874
No 341
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=3e-14 Score=94.19 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...++|||+|||+++++++|+++|+.||.|.++.++.+ +||||+|.+.++|.+|++.+++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999999999999999999765 89999999999999999998863
No 342
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=8.7e-14 Score=90.01 Aligned_cols=60 Identities=30% Similarity=0.529 Sum_probs=55.0
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||+++++++|+++|+.||.|.++.++ ++||||+|.+.++|.+|+..+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g 67 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCC
Confidence 3457899999999999999999999999999999886 35899999999999999999886
No 343
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=1.3e-13 Score=98.70 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+...++|||+|||.++++++|+++|+.||.|.++.+.+++.+|.++|||||+|.+.++|.+|+..+++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999999999988899999999999999999999999886
No 344
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-13 Score=86.84 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=55.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcC--CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKY--PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~--g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+.++|||+|||.++++++|+++|+.| |.|.++.+. ++||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC
Confidence 334567899999999999999999999999 889888764 46999999999999999998886
No 345
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=2.4e-14 Score=91.41 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..+.++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 4457899999999999999999999999977665 24788999999999999999999998885
No 346
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9e-14 Score=88.70 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=56.9
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEE-EEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAK-VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~-~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
....++|||+|||+++++++|+++|+.||.|.+++ ++.++.++. |||+|.+.++|.+|+..+++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCC
Confidence 34578999999999999999999999999999994 777754443 999999999999999988863
No 347
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.8e-13 Score=90.80 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=69.9
Q ss_pred CCceEEecCCCC--CC---CHHHHHHHhccCCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhcCCCccc
Q psy7847 86 DDFRLFCGDLGN--DV---TDELLIRTFSKYPSFLKAKVVRDKR----TNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156 (170)
Q Consensus 86 ~~~~l~v~nlp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 156 (170)
...+|++.|+-. ++ .+++|++.|++||.|..+.+++++. ++.++|++||+|.+.++|.+|++.||| ..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG---r~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG---RW 95 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT---CE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC---CE
Confidence 567899999842 22 3689999999999999999998864 345679999999999999999999999 99
Q ss_pred cCCeeEEEEeecc
Q psy7847 157 VGDLKTRSSITLK 169 (170)
Q Consensus 157 ~~~~~i~v~~~~~ 169 (170)
++|+.|+|++...
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999999753
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.8e-14 Score=88.27 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=50.8
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHH
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~ 80 (170)
.++++|||+|||.++++++|+++|+.||.|.+++++.+ ++|||||+|.+.++|+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH
Confidence 35789999999999999999999999999999998754 689999999999999764
No 349
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.2e-14 Score=92.99 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=56.1
Q ss_pred cEEEEcCC----CCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCC----HHH----HHHHHH--HcCC
Q psy7847 23 FRLFCGDL----GNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD----PQD----FIRANK--EMND 86 (170)
Q Consensus 23 ~~v~v~nL----p~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~----~~~----a~~~~~--~~~~ 86 (170)
..|||+|| |+++++++|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .+++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 9999999999999999999999999999999999999999996 433 677777 4454
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=2.3e-14 Score=98.15 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=58.5
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEE------EEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKA------KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i------~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
....+.++|||+|||+++++++|+++|+.||.|..+ .+.. ..+|.++|||||+|.+.++|.+|+..+|+
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 335567899999999999999999999999998764 1211 13688999999999999999999999987
No 351
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.3e-14 Score=88.41 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=53.8
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCC-eeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~-v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
+...++|||+|||.++++++|+++|+.||. +..+.+. +++||||+|.+.++|.+|+..+++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccC
Confidence 445789999999999999999999999999 6666553 368999999999999999999987
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=2.4e-13 Score=94.67 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+..-.+|||+|||+++++++|+++|++||.|.+|.+... .+++||||+|.+.++|.+|++.+++.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 444566999999999999999999999999999998653 25689999999999999999999873
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=2.2e-13 Score=97.86 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
.++|||+|||+++++++|+++|+.||.|.+++++++. +|.++|||||+|.+.++|.+|+..++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 5789999999999999999999999999999999985 68999999999999999999997654
No 354
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=9.8e-13 Score=87.85 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=52.9
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCE-EEEEeCCHHHHHHHHHHcCCC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF-GFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~-afv~f~~~~~a~~~~~~~~~~ 87 (170)
..|||+|||+.+++++|+++|++||.|.+|.+.. + .|+ |||+|.+.++|..|++.|++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3478999999999999999999999999999865 2 276 999999999999999999973
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.6e-13 Score=85.85 Aligned_cols=61 Identities=21% Similarity=0.433 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCccHHHHHHHhhcC----C-------CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGNDVTDELLIRTFSKY----P-------SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~~t~~~l~~~f~~~----g-------~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+.++|||+|||+++++++|+++|+.| | .+.++.+.++ +|||||+|.+.++|.+|+ .+++.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 357899999999999999999999999 8 8999988754 689999999999999999 88863
No 356
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=2e-13 Score=85.83 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
..++|||+|||+++++++|+++|++| .|.++.+. .++|||||+|.+.++|.+|+..+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g 62 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQ 62 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCC
Confidence 46789999999999999999999999 89999884 5679999999999999999999986
No 357
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=5e-13 Score=89.79 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=56.4
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCE-EEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF-GFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~-afv~f~~~~~a~~~~~~~~~~ 87 (170)
+.+--+|||+||++.+|+++|+++|++||.|.+|.+.... +++ |||+|.+.++|..|++.|++.
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 3444568899999999999999999999999999887642 577 999999999999999999974
No 358
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-12 Score=83.48 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=54.7
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+.+.++|||+|| ++++++|+++|+.||.|.++.+. .+++||||+|.+.++|.+|+..+++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 3446789999996 99999999999999999999884 4578999999999999999999886
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=1.1e-12 Score=87.44 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=55.2
Q ss_pred CCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 17 CEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 17 ~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
..+.+.++|||+|| ++++++|+++|+.||.|.++.+. .++|||||+|.+.++|.+|+..+++.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34456789999996 79999999999999999999885 45789999999999999999998863
No 360
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=1.1e-12 Score=101.60 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=63.1
Q ss_pred CCceEEecC--CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCe--e
Q psy7847 86 DDFRLFCGD--LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDL--K 161 (170)
Q Consensus 86 ~~~~l~v~n--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~--~ 161 (170)
...+|||+| |++.+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|||....-..|+ .
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 457999998 578999999999999999999887743 479999999999999999999999544222344 5
Q ss_pred EEEEeec
Q psy7847 162 TRSSITL 168 (170)
Q Consensus 162 i~v~~~~ 168 (170)
+.++++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=82.87 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 97 NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 97 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
..+++++|+++|++||.|..+.++. .++|||||+|.+.++|..|++.+++ +.+++|+|.|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~-----~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG-----LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB-----CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC-----CCCCeEEEEEccC
Confidence 5799999999999999999999873 5699999999999999999998555 4689999999864
No 362
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.1e-12 Score=80.63 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCcE-EEEcCCCCCccHHH----HHHHhhcCC-CeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 21 NDFR-LFCGDLGNDVTDEL----LIRTFSKYP-SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 21 ~~~~-v~v~nLp~~~t~~~----l~~~f~~~g-~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
++.+ |||+|||.++++++ |+++|+.|| .|.+| ++ |+|||.|.+.++|.+|++.+++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC
Confidence 4555 99999999999988 558999994 99888 33 9999999999999999999997
No 363
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=3.6e-12 Score=82.81 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCCC-----CccHHHHHHHhhcCCCeeEEEEEecCCC-CCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGN-----DVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~-----~~t~~~l~~~f~~~g~v~~i~~~~~~~~-~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.+++.|+|+||.. +-++++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|+..+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 4578999999962 2378999999999999999999998643 688999999999999999999999974
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=1.5e-12 Score=85.80 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=63.1
Q ss_pred CceEEecCCCCCC----------CHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccc
Q psy7847 87 DFRLFCGDLGNDV----------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156 (170)
Q Consensus 87 ~~~l~v~nlp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 156 (170)
.++|.+.|+=..- .+++|++.|++||.|..+.+.++. ++|+|||+|.+.++|.+|++.||| ..
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG---~~ 79 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHG---RW 79 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTT---CE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCC---CE
Confidence 4566676653211 246899999999999999886653 589999999999999999999999 99
Q ss_pred cCCeeEEEEeecc
Q psy7847 157 VGDLKTRSSITLK 169 (170)
Q Consensus 157 ~~~~~i~v~~~~~ 169 (170)
++|+.|+|+|+..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999753
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=7.3e-12 Score=92.49 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=57.5
Q ss_pred CCCCcEEEEcCCCCCc---------cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 19 DENDFRLFCGDLGNDV---------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~---------t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
....++|||+|||.++ ++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|+.|++.+++.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 4467899999999998 79999999999999999999864 689999999999999999999974
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=1.9e-11 Score=94.71 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCCCCcEEEEcC--CCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 18 EDENDFRLFCGD--LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 18 ~~~~~~~v~v~n--Lp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...++.+|||+| |+..+|+++|+++|++||.|.++.+.. ++|||||+|.+.++|++|++.+|+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 355678999999 578999999999999999999887743 4699999999999999999999985
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=8.7e-11 Score=76.97 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=56.1
Q ss_pred CCCCCCCcEEEEcCCCCCc-----------cHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc
Q psy7847 16 TCEDENDFRLFCGDLGNDV-----------TDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~-----------t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~ 84 (170)
...+.++++|+|+||.... ++++|+++|++||.|.++.+ .++ .++|||||+|.+.++|.+|+..+
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 3456678899999994332 26899999999999999966 443 37999999999999999999999
Q ss_pred CCC
Q psy7847 85 NDD 87 (170)
Q Consensus 85 ~~~ 87 (170)
|+.
T Consensus 85 ng~ 87 (112)
T 2dit_A 85 DGR 87 (112)
T ss_dssp TTC
T ss_pred CCC
Confidence 973
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.18 E-value=7.5e-11 Score=76.52 Aligned_cols=67 Identities=18% Similarity=0.095 Sum_probs=57.2
Q ss_pred CCcEEEEcCC--CCCcc--------HHHHHHHhhcCCCeeEEEEEecCCC--CCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDL--GNDVT--------DELLIRTFSKYPSFLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nL--p~~~t--------~~~l~~~f~~~g~v~~i~~~~~~~~--~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++.|.|.|+ |.+.. +++|++.|++||.|.++.+++++.+ +.++|+|||+|.+.++|.+|+..+|+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5778999998 44443 4799999999999999999988744 367899999999999999999999974
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.14 E-value=2.1e-11 Score=78.99 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=52.1
Q ss_pred EcCCCCCccHHHHHHHh------------hcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 27 CGDLGNDVTDELLIRTF------------SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 27 v~nLp~~~t~~~l~~~f------------~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+.|||.++++++|++.| ++||.|.++.+++++ ++.++|||||+|.+.++|.+|+..+|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 56777788888777666 999999999999886 5789999999999999999999999974
No 370
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.7e-10 Score=75.38 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCceEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHhcCCCccccCCeeEE
Q psy7847 86 DDFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIRANKEMNEFPHLFVGDLKTR 163 (170)
Q Consensus 86 ~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~~~~~~~~~~~~i~ 163 (170)
....|+|+||++. +++++|+++|+.||.|.+|.+.+++. .|||.|.+ ..+|..|+..+|. ....+++..++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~-~~~~i~g~~~~ 89 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANN-GNLQLRNKEVT 89 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTT-SCBCTTSSSEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhc-CCcEEeCcEEE
Confidence 3579999999999 99999999999999999999988753 49999999 8999999999952 12888888888
Q ss_pred EEee
Q psy7847 164 SSIT 167 (170)
Q Consensus 164 v~~~ 167 (170)
+.+.
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=72.11 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=60.1
Q ss_pred CceEEecCCC----CCCCH----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccC
Q psy7847 87 DFRLFCGDLG----NDVTD----ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVG 158 (170)
Q Consensus 87 ~~~l~v~nlp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 158 (170)
.-|++|...+ ..+.. .+|.+.|++||.+..+++..++ +||+|.+.++|.+|++ ||| ..++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG---~~v~ 74 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNG---KELL 74 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTT---CEET
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCC---eEeC
Confidence 3467776665 23333 6799999999999999998774 8999999999999999 999 9999
Q ss_pred CeeEEEEeecc
Q psy7847 159 DLKTRSSITLK 169 (170)
Q Consensus 159 ~~~i~v~~~~~ 169 (170)
|+.|+|+++.+
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999999875
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.11 E-value=2.7e-10 Score=75.41 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCcEEEEcCCC--CC---ccHHHHHHHhhcCCCeeEEEEEecCC----CCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 21 NDFRLFCGDLG--ND---VTDELLIRTFSKYPSFLKAKVVRDKR----TNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 21 ~~~~v~v~nLp--~~---~t~~~l~~~f~~~g~v~~i~~~~~~~----~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
+++.|+|+|+- .+ --+++|++.|++||.|.++.+++++. ++.++|++||+|.+.++|.+|+..+|+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 57899999993 22 23689999999999999999999864 3567899999999999999999999974
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1e-09 Score=70.47 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=50.2
Q ss_pred CcEEEEcCCC-------CCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 22 DFRLFCGDLG-------NDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 22 ~~~v~v~nLp-------~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
.+++.|.-.+ .++++++|+++|++||.|.++.++ +.++|||||+|.+.++|..|+..+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 4456665443 468999999999999999999987 36789999999999999999987553
No 374
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=6.4e-10 Score=81.16 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=74.8
Q ss_pred eCCHHHHHHHHHHcCC-----CceEEecCCC-----CCCCHHHHHHHhccCCCeeEEEEeecCC----CCCcccEEEEEe
Q psy7847 71 FKDPQDFIRANKEMND-----DFRLFCGDLG-----NDVTDELLIRTFSKYPSFLKAKVVRDKR----TNKTKGFGFVSF 136 (170)
Q Consensus 71 f~~~~~a~~~~~~~~~-----~~~l~v~nlp-----~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afv~f 136 (170)
..+.+.....+..+-. ...+.+.++- ..-.+++|.+.|++||.|..+.+.++.. ++.++|++||+|
T Consensus 103 ~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f 182 (222)
T 3dxb_A 103 ALSKGQLKEFLDANLAGSAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEF 182 (222)
T ss_dssp CCCHHHHHHHHHHHSCCSCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred ccChHHHHHHHHhhccccccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEE
Confidence 4567777777765443 2244444332 2345789999999999999999986653 347899999999
Q ss_pred cCHHHHHHHHHHhcCCCccccCCeeEEEEeecc
Q psy7847 137 KDPQDFIRANKEMNEFPHLFVGDLKTRSSITLK 169 (170)
Q Consensus 137 ~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~~ 169 (170)
.+.++|.+|++.||| ..++||.|.+++...
T Consensus 183 ~~~~~a~~a~~~l~g---r~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 183 SIASETHKAIQALNG---RWFAGRKVVAEVYDQ 212 (222)
T ss_dssp SSHHHHHHHHHHHTT---CBSSSSBCEEEECCH
T ss_pred CCHHHHHHHHHHhcC---ceECCeEEEEEEcCH
Confidence 999999999999999 999999999998753
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2.4e-09 Score=70.77 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=56.7
Q ss_pred CCCCCCCcEEEEcCCCCC-ccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCC-HHHHHHHHHHcCC
Q psy7847 16 TCEDENDFRLFCGDLGND-VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIRANKEMND 86 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~-~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~-~~~a~~~~~~~~~ 86 (170)
+-.-.....|+|+||+.+ ++.++|+++|+.||+|..|.+.++.. .|||.|.+ .++|..++..++.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTT
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhc
Confidence 334456788999999999 99999999999999999999987753 59999999 8999999998853
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=6.8e-10 Score=69.65 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCceEEecCCCCC-----CCH----HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccc
Q psy7847 86 DDFRLFCGDLGND-----VTD----ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLF 156 (170)
Q Consensus 86 ~~~~l~v~nlp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 156 (170)
..-|++|..++.. +.. .+|.+.|++||.+..+++..|+ +||+|.+.++|.+|++ ||| ..
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG---~~ 81 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG---MK 81 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG---SE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC---ee
Confidence 3457888777632 322 5688999999999999998774 9999999999999999 999 99
Q ss_pred cCCeeEEEEeeccC
Q psy7847 157 VGDLKTRSSITLKG 170 (170)
Q Consensus 157 ~~~~~i~v~~~~~~ 170 (170)
++|+.|+|++..++
T Consensus 82 v~Gr~L~V~~k~~~ 95 (95)
T 1ufw_A 82 VKGRAVKISGPSSG 95 (95)
T ss_dssp ETTEEEEEECCCCC
T ss_pred eCCeEEEEeccCCC
Confidence 99999999987764
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.82 E-value=1.9e-08 Score=65.96 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCCC--CC--------ccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC-
Q psy7847 19 DENDFRLFCGDLG--ND--------VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD- 87 (170)
Q Consensus 19 ~~~~~~v~v~nLp--~~--------~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~- 87 (170)
+.+++.|.|.|+= .+ --+++|++.|++||.|.++.+.++. .+|++||+|.+.++|.+|+..+|+.
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4457788899882 22 1236889999999999999986652 5899999999999999999999974
Q ss_pred ---ceEEecCCCCCCCHHHHHHHh
Q psy7847 88 ---FRLFCGDLGNDVTDELLIRTF 108 (170)
Q Consensus 88 ---~~l~v~nlp~~~~~~~l~~~f 108 (170)
+.|.+.- ..++...+.|
T Consensus 80 f~GR~i~v~~----~~~~~y~~~f 99 (114)
T 3s6e_A 80 FAGKMITAAY----VPLPTYHNLF 99 (114)
T ss_dssp ETTEECEEEE----ECHHHHHHHC
T ss_pred ECCEEEEEEE----EcHHHHHHhC
Confidence 3444432 3444555555
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-06 Score=56.24 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCC---CceEEecCCCCCCCHHHHHHHhccC-----CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q psy7847 75 QDFIRANKEMND---DFRLFCGDLGNDVTDELLIRTFSKY-----PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146 (170)
Q Consensus 75 ~~a~~~~~~~~~---~~~l~v~nlp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 146 (170)
.++.+.+..-+. .+++-+-|||..+++..++.+..++ |.+..+.+..|. +-|+|+|.+...|-+|.
T Consensus 6 qeVk~il~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 6 NEVKRLLASRNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKML 79 (117)
T ss_dssp HHHHHHHHCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHH
T ss_pred HHHHHHHhccCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHH
Confidence 456666665544 5789999999999999999999999 999999888774 46999999999999999
Q ss_pred HHhcCCCccccCCeeEEEE
Q psy7847 147 KEMNEFPHLFVGDLKTRSS 165 (170)
Q Consensus 147 ~~l~~~~~~~~~~~~i~v~ 165 (170)
-.+|| ..+.|++|++.
T Consensus 80 LaL~G---~ef~gr~Lr~g 95 (117)
T 2l9w_A 80 MILNG---SQFQGKVIRSG 95 (117)
T ss_dssp HHHSS---EEETTEEEEEE
T ss_pred hhcCC---eeecCeEEEec
Confidence 99999 99999999985
No 379
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.35 E-value=6.8e-06 Score=51.55 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=58.2
Q ss_pred ccccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHc--CCCce
Q psy7847 12 WIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM--NDDFR 89 (170)
Q Consensus 12 ~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~--~~~~~ 89 (170)
...+...+...+.++| ++|+++.-.||.++|+.|| -..|+.+.|. .|||.|.+++.|..++..+ +...+
T Consensus 6 l~g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~k~~~y~ 76 (100)
T 1whv_A 6 SGGPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSKYAESYR 76 (100)
T ss_dssp CCCSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHHHCCSSE
T ss_pred cCCCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcccCCceE
Confidence 3455566677778888 9999999999999999999 4568888774 6999999999999999866 66566
Q ss_pred EE
Q psy7847 90 LF 91 (170)
Q Consensus 90 l~ 91 (170)
+.
T Consensus 77 i~ 78 (100)
T 1whv_A 77 IQ 78 (100)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=2.4e-06 Score=53.21 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCC----CccH----HHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC----c
Q psy7847 21 NDFRLFCGDLGN----DVTD----ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD----F 88 (170)
Q Consensus 21 ~~~~v~v~nLp~----~~t~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~----~ 88 (170)
+..+|+|.-.|. +.-+ .+|.+.|..||.+..+++..++ +||+|.+.++|.+|+. +++. +
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455777766652 2333 6789999999999999998875 8999999999999998 8874 4
Q ss_pred eEEecCCCCCC
Q psy7847 89 RLFCGDLGNDV 99 (170)
Q Consensus 89 ~l~v~nlp~~~ 99 (170)
+|.|.--.++|
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 55554333333
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.24 E-value=2.3e-06 Score=62.10 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=47.5
Q ss_pred ccHHHHHHHhhcCCCeeEEEEEecCC----CCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 34 VTDELLIRTFSKYPSFLKAKVVRDKR----TNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 34 ~t~~~l~~~f~~~g~v~~i~~~~~~~----~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
-.+++|++.|++||.|.++.+.++.. ++.++|++||+|.+.++|.+|+..+++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 45689999999999999999986653 3488999999999999999999999984
No 382
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.03 E-value=3e-05 Score=48.40 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCC--CcCCEEEEEeCCHHHHHHHHHHcCCCceEEe
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN--KTKGFGFVSFKDPQDFIRANKEMNDDFRLFC 92 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~--~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v 92 (170)
.+|.|++||+.+|++++.+.++....+........+.+. ...+-|||.|.+.+++.......++ .+|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g--~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG--YVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT--CEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEEE
Confidence 478999999999999999999999888777776665443 3356799999999999999998887 3555
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=4.9e-06 Score=52.10 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCC-----ccH----HHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 20 ENDFRLFCGDLGND-----VTD----ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 20 ~~~~~v~v~nLp~~-----~t~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
.++.+|+|.-++.+ .-+ .+|.+.|..||.+..+++..++ +||+|.+.++|.+|+. +++.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 34678888877643 222 5688999999999999999885 9999999999999998 8863
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=8.3e-05 Score=47.15 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhc-----CCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH-cC---C-----
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSK-----YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE-MN---D----- 86 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~-----~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~-~~---~----- 86 (170)
-..+|.|.|||+++.++.|.-+|+. -|.+.++.... ..|+|+|.+...|++.++. -| +
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 3568999999999999999999975 24788877644 4699999999999999987 22 2
Q ss_pred -------CceEEecCCCCCCC
Q psy7847 87 -------DFRLFCGDLGNDVT 100 (170)
Q Consensus 87 -------~~~l~v~nlp~~~~ 100 (170)
..+|++.+||+.++
T Consensus 79 ~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCCCCCCCCCSCCCCCC
T ss_pred EcCCCCCcceEeeecCCCCCC
Confidence 35888888888765
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.93 E-value=5.3e-05 Score=47.28 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=53.9
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhcCC
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK--TKGFGFVSFKDPQDFIRANKEMNEF 152 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~ 152 (170)
.|.|++||+.+|++++.+.++....+.+..+...+.+.. ..+.|+|.|.+.+++....+.++|.
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 688999999999999999999998888877766654332 2346999999999999999999993
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=3.1e-05 Score=49.26 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=61.2
Q ss_pred CceEEecCCCCCCC-----HHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 87 DFRLFCGDLGNDVT-----DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 87 ~~~l~v~nlp~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
..+|++.||+.++- ++.++.+|..|+.+......+.- ....|.|.+.++|.+|-..||+ ..++|+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~---~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHK---TEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTT---SEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhcc---ceecCce
Confidence 45899999987652 36789999999988877666542 2578999999999999999999 9999999
Q ss_pred EEEEeecc
Q psy7847 162 TRSSITLK 169 (170)
Q Consensus 162 i~v~~~~~ 169 (170)
+++-++.+
T Consensus 76 ~r~YFgq~ 83 (104)
T 1wey_A 76 MKLYFAQT 83 (104)
T ss_dssp CEEECCCC
T ss_pred eEEEecCC
Confidence 99998753
No 387
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.66 E-value=5.7e-05 Score=47.49 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~ 85 (170)
+.++| ++|+++.-.||.++|+.|| ...|+.+.|. .|||.|.+++.|..++..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 5678888774 69999999999999998763
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.0004 Score=44.49 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=59.7
Q ss_pred CCCCcEEEEcCCCCCccHHHHHHHhhcC-----CCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCC----Cce
Q psy7847 19 DENDFRLFCGDLGNDVTDELLIRTFSKY-----PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMND----DFR 89 (170)
Q Consensus 19 ~~~~~~v~v~nLp~~~t~~~l~~~f~~~-----g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~----~~~ 89 (170)
.+..+++-+-|||-.++++.|+.+.+.+ |.+..+.+..|- +-|+|+|.|..+|-+|.-.++| .++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4457899999999999999999999999 999999998874 4599999999999999988887 356
Q ss_pred EEec
Q psy7847 90 LFCG 93 (170)
Q Consensus 90 l~v~ 93 (170)
|.++
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6654
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.54 E-value=0.00016 Score=45.51 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCC--CCcCCEEEEEeCCHHHHHHHHHHcCCCceEEe
Q psy7847 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFC 92 (170)
Q Consensus 21 ~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~--~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v 92 (170)
.+-+|.|+.||+.+|++++.+.++..-.+........+.+ ...-+-|||.|.+.+++.......++ .+|+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g--~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG--YIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT--EEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--cEEE
Confidence 4568999999999999998888776555433333322222 12346789999999999999988876 4444
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.52 E-value=0.00036 Score=43.74 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=44.5
Q ss_pred ceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 88 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
+.+++ ++|+.+-..||.++|+.||. ..|.++-|- .|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999984 445555543 79999999999999998763
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00015 Score=45.52 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhcC
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK--TKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
+....|.|+.||+.+|++++.+.++..-.+.+..+...+.+.. .-..|+|.|.+.++...-.+.++|
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 4466899999999999999999998876665544443332222 223589999999999999999999
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00032 Score=44.10 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=44.8
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhc
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
.+++ ++|+.+-..||.++|+.|| -..|.++-|- .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999998 4566666553 79999999999999999764
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0034 Score=39.73 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=52.1
Q ss_pred CceEEecCCCCCCCHHHHHHHhcc---C--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCCee
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSK---Y--PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLK 161 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~ 161 (170)
+.+|.|.|||+.++++.|.-.|+. . |.+..+.... +-|+|+|.+.+.|++.++.- . ..+.+..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~-~---H~L~~~~ 75 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA-D---HELHGAQ 75 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS-C---CBSSSSB
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC-c---ceecCeE
Confidence 468999999999999999999976 2 4566665532 36899999999999998841 2 5667777
Q ss_pred EEEE
Q psy7847 162 TRSS 165 (170)
Q Consensus 162 i~v~ 165 (170)
|+|.
T Consensus 76 LsV~ 79 (104)
T 2dhx_A 76 LSLR 79 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7763
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.0053 Score=39.97 Aligned_cols=62 Identities=11% Similarity=0.196 Sum_probs=49.9
Q ss_pred CceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcCCCccccCC
Q psy7847 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD 159 (170)
Q Consensus 87 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~ 159 (170)
...|.|-+.|+.. ...+.+.|++||.|...... .+ ..+-.|.|.++.+|++|+. .|| ..+++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~-kNG---~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALS-KDG---RIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHT-TTT---CEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHH-hCC---eEecC
Confidence 5678888999985 66688889999999988762 12 3478899999999999999 588 77764
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.04 E-value=0.0033 Score=50.40 Aligned_cols=55 Identities=5% Similarity=0.104 Sum_probs=42.3
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHH
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~ 82 (170)
.+.|+|. .|...++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4689996 79999999999999999999999887654 2699999999999988874
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.67 E-value=0.078 Score=34.44 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=46.6
Q ss_pred CCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHH
Q psy7847 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83 (170)
Q Consensus 18 ~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~ 83 (170)
+....+.|.|-+.|+.. ...|...|+.||.|.+.... ...-+-+|.|.+..+|++|+..
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh
Confidence 34456789999999986 45677789999999887761 1235899999999999999965
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.50 E-value=0.0077 Score=48.32 Aligned_cols=56 Identities=5% Similarity=0.100 Sum_probs=41.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q psy7847 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147 (170)
Q Consensus 86 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 147 (170)
..+.++|. .|...++.+|.+.|++||.|..+.+..+. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 34689997 79999999999999999999999887654 2599999999988886654
No 398
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.41 E-value=0.073 Score=43.25 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=50.8
Q ss_pred CCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCCceEE
Q psy7847 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLF 91 (170)
Q Consensus 16 ~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~ 91 (170)
.+.+..++.++++ +|..+...+|.+.|+.||. .+|+.+.+. .|||.|.+.+.|..++..+.....+.
T Consensus 434 d~~~~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~~~~~ 500 (507)
T 3d45_A 434 DLQPKRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKYAESYR 500 (507)
T ss_dssp CCCCCGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTTCSSCE
T ss_pred CCCCCcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHhCCceE
Confidence 3334455677776 8999999999999999994 456665542 59999999999999999885443333
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.96 E-value=0.084 Score=33.40 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=52.6
Q ss_pred CcEEEEcCCCCCc-cH----HHHHHHhhcCCCeeEEEEEecCCCCCcCCEEEEEeCCHHHHHHHHHHcCCC------ceE
Q psy7847 22 DFRLFCGDLGNDV-TD----ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDD------FRL 90 (170)
Q Consensus 22 ~~~v~v~nLp~~~-t~----~~l~~~f~~~g~v~~i~~~~~~~~~~~~~~afv~f~~~~~a~~~~~~~~~~------~~l 90 (170)
..+|+|.||+.++ .. +.++++|..|++.......+.- +-..|.|.++++|.+|-..+|+. .++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4579999998865 22 5778999999998888776652 24789999999999999999874 466
Q ss_pred EecC
Q psy7847 91 FCGD 94 (170)
Q Consensus 91 ~v~n 94 (170)
|.+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 6654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.45 E-value=0.085 Score=34.83 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=49.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeecC--------C-CC----CcccEEEEEecCHHHHHHHHHHhc
Q psy7847 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDK--------R-TN----KTKGFGFVSFKDPQDFIRANKEMN 150 (170)
Q Consensus 85 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~--------~-~~----~~~g~afv~f~~~~~a~~a~~~l~ 150 (170)
++..-+.|-+.|++.+. .+-+.|++||.|.. ....++. . .. ....+..|+|.++.+|.+|+. .|
T Consensus 5 ~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 34456777788776554 56678999999865 2111100 0 00 124578999999999999999 68
Q ss_pred CCCccccCCeeEEEE
Q psy7847 151 EFPHLFVGDLKTRSS 165 (170)
Q Consensus 151 ~~~~~~~~~~~i~v~ 165 (170)
| ..++|.-|-|-
T Consensus 83 G---~ii~G~mIGV~ 94 (132)
T 3p3d_A 83 G---AVFNGVLLGVI 94 (132)
T ss_dssp T---CEETTEECEEE
T ss_pred C---eEeCcEEEEEE
Confidence 8 88888755443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.52 E-value=0.73 Score=37.38 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred eEEecCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhcC
Q psy7847 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 89 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 151 (170)
.++++ +|..+...+|.++|+.||. .+|.++.+ ..|||.|.+.++|..+++.++.
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 55554 8889999999999999995 45555543 3699999999999999998865
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.73 E-value=0.41 Score=31.56 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=52.5
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeE-EEEEe------------cCCCC-CcCCEEEEEeCCHHHHHHHHHHcCCC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVR------------DKRTN-KTKGFGFVSFKDPQDFIRANKEMNDD 87 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~-i~~~~------------~~~~~-~~~~~afv~f~~~~~a~~~~~~~~~~ 87 (170)
...|.|=+.|++.+. .+.+.|++||.|.+ ....+ .++.+ ....+..|+|.++.+|.+|+......
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 456888899887765 56678999998765 21111 01111 12468899999999999999643321
Q ss_pred c-eEEecCCCCCCCHHHHHHHh
Q psy7847 88 F-RLFCGDLGNDVTDELLIRTF 108 (170)
Q Consensus 88 ~-~l~v~nlp~~~~~~~l~~~f 108 (170)
. -.+|+-.|. ++..++++-
T Consensus 86 i~G~mIGV~Py--~~~~ve~l~ 105 (132)
T 3p3d_A 86 FNGVLLGVIPY--TKDAVERLQ 105 (132)
T ss_dssp ETTEECEEEEC--CHHHHHHHC
T ss_pred eCcEEEEEEEC--CHHHHHHHh
Confidence 1 125666666 566666554
No 403
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=70.08 E-value=10 Score=23.04 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=34.4
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhc
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFS 109 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 109 (170)
.+||.||++...++...++...++- +=||++ .++++++..++.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV-~gfvg~---pl~~~Ev~~il~ 91 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV-RGIVPG---TIAIEEIEPLLT 91 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE-EEECSS---CCCHHHHHHHHC
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc-eEeCCC---CCCHHHHHHHhC
Confidence 7899999999999999999877753 344554 788888888775
No 404
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=54.66 E-value=37 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=28.4
Q ss_pred CCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 64 ~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
..-.|+.|++++++.++++....-..|-|+|+...
T Consensus 81 ~~~v~il~k~p~d~~~lve~Gv~i~~vNvG~m~~~ 115 (168)
T 3eye_A 81 HQKIFLICRTPQTVRKLVEGGIDLKDVNVGNMHFS 115 (168)
T ss_dssp TCCEEEEESSHHHHHHHHHTTCCCCEEEECCBCCC
T ss_pred CceEEEEECCHHHHHHHHHcCCCCCEEEECCCcCC
Confidence 34589999999999999987776678888887763
No 405
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=52.12 E-value=14 Score=23.38 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=37.4
Q ss_pred cCCEEEEEeCCHH-----HHHHHHHHcCCCceEEe--cCCCCCCCHHHHHHHhccC
Q psy7847 63 TKGFGFVSFKDPQ-----DFIRANKEMNDDFRLFC--GDLGNDVTDELLIRTFSKY 111 (170)
Q Consensus 63 ~~~~afv~f~~~~-----~a~~~~~~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~ 111 (170)
.+||.||.+...+ +....+...++-. -|| ++-|..++++++..+....
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~-gfvg~g~~P~pi~~~ev~~i~~~~ 115 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT-GFVGAGMRPVPLSPDEVRHILEVS 115 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTTCC-CCCCSSSSSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCCce-EEeCCCCEEeECCHHHHHHHHHHH
Confidence 6899999999887 7888888887754 344 3567789999999887543
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.96 E-value=7.4 Score=22.40 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=24.7
Q ss_pred EEEEEecCHHHHHHHHHHhcCCCccccCCeeEEEEeec
Q psy7847 131 FGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITL 168 (170)
Q Consensus 131 ~afv~f~~~~~a~~a~~~l~~~~~~~~~~~~i~v~~~~ 168 (170)
+.||+-. ...+..+++.|++ ..+.|++++++.+.
T Consensus 42 ~s~v~v~-~~~~~~~~~~l~~---~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEIL-NGKGPHVLKVMKN---TTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEEC-TTCHHHHHHHHTT---CCC---CCCEEECC
T ss_pred cEEEEEC-HHHHHHHHHHhcc---ccCcCceEEEEECC
Confidence 6888876 4557788899999 88899999988764
No 407
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=50.67 E-value=37 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=28.8
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
...-.|+.|++++++.++++....-..+-|+|+...
T Consensus 77 ~~~~v~il~k~p~d~~~lv~~g~~i~~vNvG~m~~~ 112 (163)
T 3p3v_A 77 PAQSIFIVVKDLQDAKLLVEGGVPITEINIGNIHKT 112 (163)
T ss_dssp TTCEEEEEESSHHHHHHHHHTTCCCCEEEEEEBCCC
T ss_pred CCceEEEEECCHHHHHHHHHcCCCCCEEEECCCcCC
Confidence 445689999999999999987766677888877653
No 408
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=47.38 E-value=43 Score=23.24 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=38.7
Q ss_pred CCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC-----------CCHHHH---HHHhccCCCeeEEEE
Q psy7847 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND-----------VTDELL---IRTFSKYPSFLKAKV 119 (170)
Q Consensus 64 ~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~-----------~~~~~l---~~~f~~~g~i~~~~~ 119 (170)
..-.|+.|++++++.++++....-..|-|+|+... ++++++ +++-..||.-..++.
T Consensus 97 ~~~v~il~k~p~d~~~lve~Gv~i~~vNvG~m~~~~gk~~i~~~V~v~~ed~~~lk~L~~~~Gv~v~~q~ 166 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMDGGLPITTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQM 166 (187)
T ss_dssp CEEEEEEESSHHHHHHHHHTTCCCSEEEEEEBCCCTTSEECSSSBEECHHHHHHHHHHHHHHCCEEEECS
T ss_pred CceEEEEECCHHHHHHHHHcCCCCCEEEECCCCCCCCCEEEeccEeeCHHHHHHHHHHHhccCCEEEEEE
Confidence 45689999999999999987776678888877653 445544 444445566555543
No 409
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=42.25 E-value=62 Score=21.87 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=27.1
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
...-.|+.|++++++.++++..-.-..|-|+|+...
T Consensus 78 ~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~~ 113 (165)
T 1vsq_C 78 AGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFR 113 (165)
T ss_dssp TTCEEEEEESSHHHHHHHHHTTCCCSEEEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHcCCCCCEEEECCCcCC
Confidence 345689999999999999866555567888877643
No 410
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=39.52 E-value=26 Score=25.69 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.5
Q ss_pred CcEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 22 ~~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
..-+.|+|||+.++...|..++.. +.+..+.++.++
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Qk 145 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQK 145 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEH
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeee
Confidence 346789999999999999999987 777777776654
No 411
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=38.67 E-value=13 Score=27.35 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.3
Q ss_pred cEEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 23 ~~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
....|+|||+.++...|..++.....+..+.++.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 357899999999999999999866667777777664
No 412
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=38.53 E-value=64 Score=21.78 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCCC
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGND 98 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~ 98 (170)
...-.|+.|++++++.++++..-.-..+-|+|+...
T Consensus 75 ~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~~ 110 (164)
T 1nrz_A 75 QDETVFYLFTNPHDVLTMVRQGVQIATLNIGGMAWR 110 (164)
T ss_dssp TTCEEEEEESSHHHHHHHHTTTCCCSEEEEEEBCCC
T ss_pred CCceEEEEECCHHHHHHHHHcCCCCCEEEECCCcCC
Confidence 345689999999999999865444557777777653
No 413
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=33.46 E-value=63 Score=21.78 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=25.2
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCCCceEEecCCCC
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGN 97 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~ 97 (170)
...-.|+.|++++++.++++..-.-..+-|+|+..
T Consensus 76 ~~~~v~ll~k~p~d~~~lve~Gv~i~~iNvG~m~~ 110 (163)
T 1ble_A 76 EGVTAMLLFENPSDIVSLIEAGVPIKTVNVGGMRF 110 (163)
T ss_dssp TTCEEEEEESSSHHHHHHHTTTCCCCEEEEEEBCC
T ss_pred CCceEEEEECCHHHHHHHHHcCCCCCEEEECCCCC
Confidence 34568999999999988885444455677777664
No 414
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=31.89 E-value=17 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred EEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 25 v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
..|+|||+.++...|..++...+.+..+.++.++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 3799999999999999999876667777776664
No 415
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=31.38 E-value=28 Score=16.53 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccccCCCCCCCcEEEEcC
Q psy7847 2 LGLRPGPISSWIKKTCEDENDFRLFCGD 29 (170)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~v~n 29 (170)
+|.+|+.+.+...........+.-||++
T Consensus 7 sgarpgrpqplrgtkgkrkgarlwyvgg 34 (37)
T 2bpa_3 7 SGARPGRPQPLRGTKGKRKGARLWYVGG 34 (37)
T ss_dssp CCCCCSCCCCBCCSCCSSCCSCCCCSSS
T ss_pred CCCCCCCCccccccccccccceEEEecc
Confidence 4667776666644333333333344443
No 416
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=28.86 E-value=96 Score=18.48 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=46.2
Q ss_pred EEEEEeCCHHHHHHHHHHcCCCceEEecCCCCCCCHHHHHHHhccCCCeeEEE-EeecCCCCCcccEEEEEecCHHHHHH
Q psy7847 66 FGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAK-VVRDKRTNKTKGFGFVSFKDPQDFIR 144 (170)
Q Consensus 66 ~afv~f~~~~~a~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~-~~~~~~~~~~~g~afv~f~~~~~a~~ 144 (170)
.-|..|.++.+.+-.++.++ .+..++|..-++..|-|.-+. -.-++ ..++-.-..+|.+.+..++
T Consensus 13 slfmdftsenelelflksld------------evwsedlysrlsaaglirhviskvwnk--eqhrismvfeydskegyqk 78 (117)
T 2op5_A 13 SLFMDFTSENELELFLKSLD------------EVWSEDLYSRLSAAGLIRHVISKVWNK--EQHRISMVFEYDSKEGYQK 78 (117)
T ss_dssp EEEEECSSHHHHHHHHTTHH------------HHSCHHHHHHHHHHTEEEEEEEEECCT--TCCEEEEEEEESCHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHHHhhh--hhceeEEEEEeccHhhHHH
Confidence 45778999998888875554 244567888887777776542 12222 2233334568999999999
Q ss_pred HHHHhc
Q psy7847 145 ANKEMN 150 (170)
Q Consensus 145 a~~~l~ 150 (170)
|.+..+
T Consensus 79 cqeiid 84 (117)
T 2op5_A 79 CQEIID 84 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 866443
No 417
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=33.70 E-value=13 Score=23.34 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=27.1
Q ss_pred HHHHHHHhccCCCeeEEEEeecCCCCCcccE--EEEEecCHHHHHHHHHHhcC
Q psy7847 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGF--GFVSFKDPQDFIRANKEMNE 151 (170)
Q Consensus 101 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~--afv~f~~~~~a~~a~~~l~~ 151 (170)
++++..+..+.+ +..+.+.+...+|... | -+-.|.+.++|..|+..|-.
T Consensus 36 ~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 36 YDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 445555555554 3334443322233332 3 22378899999999887754
No 418
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.61 E-value=46 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=25.9
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEec
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD 57 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~ 57 (170)
.+.|+|+|+.++...+..++.....+..+.++.+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~Q 125 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQ 125 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEEEe
Confidence 5789999999999999888875444555655544
No 419
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=26.30 E-value=1.5e+02 Score=22.64 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=39.4
Q ss_pred CCcCCEEEEEeCCHHHHHHHHHHcCCCceEEec--CCCCCCCHHHHHHHhccCC
Q psy7847 61 NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCG--DLGNDVTDELLIRTFSKYP 112 (170)
Q Consensus 61 ~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~--nlp~~~~~~~l~~~f~~~g 112 (170)
...+||.||.+...++....+...++-. =||+ +-|..++++++..+....+
T Consensus 230 plFPGYVFV~m~~~d~~w~~Vr~tpGVt-gFVg~g~kP~pl~~~EV~~il~~~~ 282 (352)
T 2xhc_A 230 KLFPGYVFVEMIMNDEAYNFVRSVPYVM-GFVSSGGQPVPVKDREMRPILRLAG 282 (352)
T ss_dssp ESSTTEEEEEECCSHHHHHHHHTSTTCC-EECCSSSSCCCCCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEEEcchhhHHHHhcCCCee-EEcCCCCEEeecCHHHHHHHHHhhc
Confidence 4578999999998888888888887753 4554 6688899999988865543
No 420
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.12 E-value=16 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=15.5
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCcccEEEEEec
Q psy7847 102 ELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137 (170)
Q Consensus 102 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afv~f~ 137 (170)
+++.+++...|.|.+.. ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 34556666666666542 13789998865
No 421
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.83 E-value=39 Score=25.89 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.1
Q ss_pred EEEEcCCCCCccHHHHHHHhhc
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSK 45 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~ 45 (170)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
No 422
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=24.10 E-value=47 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=26.7
Q ss_pred EEEEcCCCCCccHHHHHHHhhcCCCeeEEEEEecC
Q psy7847 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58 (170)
Q Consensus 24 ~v~v~nLp~~~t~~~l~~~f~~~g~v~~i~~~~~~ 58 (170)
.+.|+|+|+.++...|..++.....+..+.++.++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qk 131 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQK 131 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEH
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEEeH
Confidence 47899999999999999998765545555555543
No 423
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=1e+02 Score=19.51 Aligned_cols=35 Identities=3% Similarity=-0.147 Sum_probs=27.0
Q ss_pred ccCCCCCCCcEEEEcCCCCCccHHHHHHHhhcCCCe
Q psy7847 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSF 49 (170)
Q Consensus 14 ~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~g~v 49 (170)
.+....-...+++|.+.. ..+.++|+++....|..
T Consensus 17 ~~~~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~ 51 (129)
T 2d8m_A 17 EELGKILQGVVVVLSGFQ-NPFRSELRDKALELGAK 51 (129)
T ss_dssp HHHTTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEE
T ss_pred CCccccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCE
Confidence 444556677889999986 66788999999998843
No 424
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.74 E-value=1.9e+02 Score=19.74 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=36.0
Q ss_pred eEEecCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEeecCCCCCcccEEEEEecC-HHHHHHHHH
Q psy7847 89 RLFCGDLGN-D--------VTDELLIRTF--SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD-PQDFIRANK 147 (170)
Q Consensus 89 ~l~v~nlp~-~--------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~ 147 (170)
+..|.|+|. . .+...|.+.| +.|.++....+ .++ ..+.|++.|.|.+ -.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHHH
Confidence 566778776 2 4457888866 88987664433 333 3468899999975 444444443
No 425
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.23 E-value=1.1e+02 Score=18.26 Aligned_cols=26 Identities=4% Similarity=0.183 Sum_probs=20.7
Q ss_pred CeeEEEEEecCCCCCcCCEEEEEeCC
Q psy7847 48 SFLKAKVVRDKRTNKTKGFGFVSFKD 73 (170)
Q Consensus 48 ~v~~i~~~~~~~~~~~~~~afv~f~~ 73 (170)
.|.++++.+-...|+-+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46788887776667889999999974
No 426
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=21.04 E-value=71 Score=21.09 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=37.3
Q ss_pred CcCCEEEEEeCCHHHHHHHHHHcCCCceEEec--CCCCCCCHHHHHHHhccCC
Q psy7847 62 KTKGFGFVSFKDPQDFIRANKEMNDDFRLFCG--DLGNDVTDELLIRTFSKYP 112 (170)
Q Consensus 62 ~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v~--nlp~~~~~~~l~~~f~~~g 112 (170)
..+||.||.+...++....+...++- +-||+ +-|..++++++..+....+
T Consensus 50 lfpgYvFV~~~~~~~~~~~v~~~~gv-~~fv~~g~~p~pi~~~ei~~i~~~~~ 101 (162)
T 2oug_A 50 LFPNYLFVEFDPEVIHTTTINATRGV-SHFVRFGASPAIVPSAVIHQLSVYKP 101 (162)
T ss_dssp SSTTEEEEEECTTTSCHHHHHHSTTE-EEECCSSSSSCCCCCHHHHHHHHCC-
T ss_pred cCCCEEEEEEEcccCceEEEEeCCCc-cEEECCCCEeeEcCHHHHHHHHhhhc
Confidence 35899999999877777778777764 34554 5677899999998886654
No 427
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=20.76 E-value=2.1e+02 Score=20.65 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCcCCEEEEEeCCHHHHHHHHHHcCCCceEEe--cCCCCCCCHHHHHHHhccCC
Q psy7847 61 NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFC--GDLGNDVTDELLIRTFSKYP 112 (170)
Q Consensus 61 ~~~~~~afv~f~~~~~a~~~~~~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~g 112 (170)
....||-||.+...+++...+...++-. -|| ++-|..++++++..+....+
T Consensus 133 ~lfPGYvfv~~~~~d~~~~~v~~tp~V~-~fv~~g~~P~pl~~~ev~~i~~~~~ 185 (248)
T 1m1h_A 133 KIFPGYILIKAHMNDKLLMAIEKTPHVF-RPVMVGGKPVPLKEEEVQNILNQIK 185 (248)
T ss_dssp SSSTTEEEEEECCCHHHHHHHHTSTTEE-EECEETTEECEECHHHHHHHHHHTT
T ss_pred cceeeEEEEEEeccHHHHHHHhcCCCeE-EEEcCCCEEeEeCHHHHHHHHHhhc
Confidence 4568999999999888888888887743 344 46788899999998876654
No 428
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.57 E-value=78 Score=19.66 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.0
Q ss_pred cCCEEEEEeCCHHHHHHHHHHcCC
Q psy7847 63 TKGFGFVSFKDPQDFIRANKEMND 86 (170)
Q Consensus 63 ~~~~afv~f~~~~~a~~~~~~~~~ 86 (170)
-+||-||+-.+..++..|+..+.+
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 589999999999999999976653
Done!