Your job contains 1 sequence.
>psy7847
MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT
NKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVV
RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRSSITLKG
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7847
(170 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040809-2 - symbol:rbm42 "RNA binding motif ... 285 4.6e-25 1
UNIPROTKB|K7EQ03 - symbol:RBM42 "RNA-binding protein 42" ... 283 9.5e-25 1
UNIPROTKB|F1N7X9 - symbol:RBM42 "RNA-binding protein 42" ... 283 1.5e-24 1
UNIPROTKB|Q0P5L0 - symbol:RBM42 "RNA-binding protein 42" ... 283 1.5e-24 1
UNIPROTKB|K7EP90 - symbol:RBM42 "RNA-binding protein 42" ... 283 1.7e-24 1
MGI|MGI:1915285 - symbol:Rbm42 "RNA binding motif protein... 283 2.0e-24 1
RGD|1306184 - symbol:Rbm42 "RNA binding motif protein 42"... 283 2.0e-24 1
UNIPROTKB|Q6AXT7 - symbol:Rbm42 "RNA-binding protein 42" ... 283 2.0e-24 1
UNIPROTKB|F1RM56 - symbol:RBM42 "Uncharacterized protein"... 283 2.1e-24 1
UNIPROTKB|Q9BTD8 - symbol:RBM42 "RNA-binding protein 42" ... 283 2.2e-24 1
UNIPROTKB|F1PT81 - symbol:RBM42 "Uncharacterized protein"... 283 2.2e-24 1
FB|FBgn0037342 - symbol:CG2931 species:7227 "Drosophila m... 274 6.8e-24 1
WB|WBGene00021901 - symbol:tag-262 species:6239 "Caenorha... 270 1.8e-23 1
TAIR|locus:2100840 - symbol:AT3G04500 species:3702 "Arabi... 242 1.7e-20 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 175 3.4e-19 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 150 4.6e-18 2
POMBASE|SPAC22E12.02 - symbol:SPAC22E12.02 "RNA-binding p... 213 2.0e-17 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 167 2.3e-17 2
DICTYBASE|DDB_G0277875 - symbol:ssbA "ssRNA-binding prote... 212 2.5e-17 1
UNIPROTKB|G4MY51 - symbol:MGG_01274 "RNA-binding protein"... 216 3.4e-17 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 164 1.8e-16 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 152 2.2e-16 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 126 2.9e-16 2
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 163 4.8e-16 2
ASPGD|ASPL0000013776 - symbol:AN3953 species:162425 "Emer... 203 5.2e-16 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 149 6.1e-16 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 150 6.9e-16 2
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 156 1.6e-15 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 141 3.2e-15 2
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 150 3.7e-15 2
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 157 4.0e-15 2
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 150 4.2e-15 2
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 138 9.6e-15 2
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 135 4.3e-14 2
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 151 6.8e-14 2
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 154 1.8e-13 2
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 139 2.8e-13 2
CGD|CAL0005693 - symbol:orf19.444 species:5476 "Candida a... 173 3.4e-13 1
UNIPROTKB|Q5A297 - symbol:CaO19.444 "Potential RNA bindin... 173 3.4e-13 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 115 3.7e-13 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 114 5.0e-13 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 114 5.3e-13 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 114 5.4e-13 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 114 5.6e-13 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 114 5.6e-13 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 123 6.5e-13 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 116 7.0e-13 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 114 8.6e-13 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 114 9.6e-13 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 114 1.1e-12 2
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 124 1.2e-12 2
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 124 1.2e-12 2
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 124 1.2e-12 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 124 1.3e-12 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 129 1.4e-12 2
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 115 1.8e-12 2
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 112 1.8e-12 2
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 124 1.9e-12 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 113 2.1e-12 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 124 2.3e-12 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 112 2.6e-12 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 112 2.6e-12 2
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 130 3.1e-12 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 124 3.3e-12 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 112 3.5e-12 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 117 3.7e-12 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 112 4.2e-12 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 112 4.2e-12 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 112 4.2e-12 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 112 4.2e-12 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 124 4.2e-12 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 112 4.4e-12 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 114 5.1e-12 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 116 5.5e-12 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 117 5.8e-12 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 109 6.0e-12 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 115 6.6e-12 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 108 7.1e-12 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 120 1.1e-11 2
SGD|S000001919 - symbol:PES4 "Poly(A) binding protein, su... 141 1.1e-11 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 120 1.4e-11 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 112 1.4e-11 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 109 1.6e-11 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 112 1.7e-11 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 118 2.0e-11 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 111 2.2e-11 2
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 110 3.0e-11 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 112 3.2e-11 2
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 108 3.5e-11 2
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 108 3.5e-11 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 154 3.5e-11 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 111 3.8e-11 2
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 120 4.0e-11 2
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 108 4.4e-11 2
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 109 4.8e-11 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 120 4.9e-11 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 130 5.4e-11 2
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 106 7.9e-11 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 109 8.5e-11 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 110 8.9e-11 2
WARNING: Descriptions of 599 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++RA
Sbjct: 301 DDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 146 NKEMN 150
+EMN
Sbjct: 361 MREMN 365
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 49/67 (73%), Positives = 60/67 (89%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +DFR+FCGDLGN+V D++L R FS+YPSFLKAKVVRDKRT KTKG+GFVSFKDP D++
Sbjct: 299 ETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYV 358
Query: 79 RANKEMN 85
RA +EMN
Sbjct: 359 RAMREMN 365
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 283 (104.7 bits), Expect = 9.5e-25, P = 9.5e-25
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 306 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 365
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 366 KTKGYGFVSFKDPSDYVRAMREMNGKY 392
Score = 281 (104.0 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 325 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 384
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 385 MREMNG---KYVGSRPIKLRKSM 404
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 328 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 387
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 388 KTKGYGFVSFKDPSDYVRAMREMNGKY 414
Score = 281 (104.0 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 407 MREMNG---KYVGSRPIKLRKSM 426
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 283 (104.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 328 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 387
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 388 KTKGYGFVSFKDPSDYVRAMREMNGKY 414
Score = 281 (104.0 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 347 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 407 MREMNG---KYVGSRPIKLRKSM 426
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 283 (104.7 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 338 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 397
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 398 KTKGYGFVSFKDPSDYVRAMREMNGKY 424
Score = 281 (104.0 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 357 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 416
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 417 MREMNG---KYVGSRPIKLRKSM 436
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 283 (104.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 354 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 413
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 414 KTKGYGFVSFKDPSDYVRAMREMNGKY 440
Score = 281 (104.0 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 433 MREMNG---KYVGSRPIKLRKSM 452
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 283 (104.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 354 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 413
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 414 KTKGYGFVSFKDPSDYVRAMREMNGKY 440
Score = 281 (104.0 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 433 MREMNG---KYVGSRPIKLRKSM 452
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 283 (104.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 354 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 413
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 414 KTKGYGFVSFKDPSDYVRAMREMNGKY 440
Score = 281 (104.0 bits), Expect = 3.4e-24, P = 3.4e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 373 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 433 MREMNG---KYVGSRPIKLRKSM 452
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 283 (104.7 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 357 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 416
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 417 KTKGYGFVSFKDPSDYVRAMREMNGKY 443
Score = 281 (104.0 bits), Expect = 3.5e-24, P = 3.5e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 376 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 435
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 436 MREMNG---KYVGSRPIKLRKSM 455
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 283 (104.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 360 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 419
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 420 KTKGYGFVSFKDPSDYVRAMREMNGKY 446
Score = 281 (104.0 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 439 MREMNG---KYVGSRPIKLRKSM 458
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 283 (104.7 bits), Expect = 2.2e-24, P = 2.2e-24
Identities = 53/87 (60%), Positives = 68/87 (78%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R SSW + E D +DFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT
Sbjct: 364 IRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTG 423
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 424 KTKGYGFVSFKDPSDYVRAMREMNGKY 450
Score = 281 (104.0 bits), Expect = 3.8e-24, P = 3.8e-24
Identities = 53/83 (63%), Positives = 67/83 (80%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DDFR+FCGDLGN+V D++L R FS++PSFLKAKV+RDKRT KTKG+GFVSFKDP D++RA
Sbjct: 383 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 442
Query: 146 NKEMNEFPHLFVGD--LKTRSSI 166
+EMN +VG +K R S+
Sbjct: 443 MREMNG---KYVGSRPIKLRKSM 462
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 49/66 (74%), Positives = 60/66 (90%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+DDFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 254
Query: 145 ANKEMN 150
A KEM+
Sbjct: 255 AMKEMD 260
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 48/66 (72%), Positives = 60/66 (90%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++DFR+FCGDLGNDV DE+L RTF+K+PSF +A+VVRDKRT K+KGFGFVSF++P DFIR
Sbjct: 195 DDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIR 254
Query: 80 ANKEMN 85
A KEM+
Sbjct: 255 AMKEMD 260
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 47/70 (67%), Positives = 61/70 (87%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
DENDFR+FCGDLGN+V+DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++
Sbjct: 199 DENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 258
Query: 79 RANKEMNDDF 88
RA +EM+ +
Sbjct: 259 RAMREMDGKY 268
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 61/127 (48%), Positives = 82/127 (64%)
Query: 43 FSKYPSFLKAKVVRDKRTNK--TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVT 100
F K K K+ + K G G V ++DP A + ND FR+FCGDLGN+V+
Sbjct: 161 FKKQTDPFKKKIKEQQAKKKFVRSGGGQV-WEDPS---LAEWDEND-FRVFCGDLGNEVS 215
Query: 101 DELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD- 159
DELL + F KYPSF KAKVVR+ RTNK+KG+GFVSF+D +D++RA +EM+ +VG+
Sbjct: 216 DELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDG---KYVGNR 272
Query: 160 -LKTRSS 165
+K R S
Sbjct: 273 PIKLRKS 279
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 45/80 (56%), Positives = 59/80 (73%)
Query: 11 SWIKKTCED--ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
SW T + END+RLFCGDLGN+V D++L + F+++P+F AKV+RDKRT KTKG+GF
Sbjct: 123 SWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGF 182
Query: 69 VSFKDPQDFIRANKEMNDDF 88
VSF +P D A KEMN +
Sbjct: 183 VSFLNPADLAAALKEMNGKY 202
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 53/115 (46%), Positives = 73/115 (63%)
Query: 53 KVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYP 112
K KR K G S++DP ++ +D+RLFCGDLGN+V D++L + F+++P
Sbjct: 107 KAETKKRAIPRKAAG-QSWEDPT----LSEWPENDYRLFCGDLGNEVNDDVLSKAFARFP 161
Query: 113 SFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD--LKTRSS 165
+F AKV+RDKRT KTKG+GFVSF +P D A KEMN +VG+ +K R S
Sbjct: 162 TFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG---KYVGNRPIKLRKS 213
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 175 (66.7 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 39/78 (50%), Positives = 51/78 (65%)
Query: 9 ISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFG 67
+SS K+ +D D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+G
Sbjct: 143 LSSGDKR--DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYG 200
Query: 68 FVSFKDPQDFIRANKEMN 85
FV F D + IRA EMN
Sbjct: 201 FVRFSDESEQIRAMTEMN 218
Score = 173 (66.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++ + D+ +F GDL DVTD +L+ TF + YPS AKVV D+ T +TKG+GFV F D
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 141 DFIRANKEMNEFP 153
+ IRA EMN P
Sbjct: 209 EQIRAMTEMNGVP 221
Score = 84 (34.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
++ T DE L+ GDL + + L F+ + AKV+R+K+T + +G+GF+ F
Sbjct: 53 VQPTTADEIR-TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEF 110
Score = 61 (26.5 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L VTD+ L FS+Y + K+ KR GFV F +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSE 305
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 150 (57.9 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 29/72 (40%), Positives = 50/72 (69%)
Query: 80 ANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
ANKE ++ F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++
Sbjct: 173 ANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRE 232
Query: 139 PQDFIRANKEMN 150
D +A M+
Sbjct: 233 RADAEKALTSMD 244
Score = 148 (57.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 28/72 (38%), Positives = 49/72 (68%)
Query: 18 ED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED N F +F GDL N+V DE+L++ FS + S +A+V+ D +T +++G+GFV+F++ D
Sbjct: 176 EDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERAD 235
Query: 77 FIRANKEMNDDF 88
+A M+ ++
Sbjct: 236 AEKALTSMDGEW 247
Score = 100 (40.3 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-KTK 64
P ++++ + N L+ G L VT+++L + F + K++ DK N K
Sbjct: 73 PTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGA 132
Query: 65 GFGFVSFKDPQDFIRANKEMN 85
+GFV F DP RA + +N
Sbjct: 133 NYGFVEFDDPGAAERAMQTLN 153
Score = 47 (21.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 145 ANKE--MNEFPHLFVGDL 160
ANKE N F H+FVGDL
Sbjct: 173 ANKEDTSNHF-HIFVGDL 189
Score = 35 (17.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
P F V + R +GF F+ ++ A ++N +
Sbjct: 326 PLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGY 366
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 42/70 (60%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D N FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F+
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFL 84
Query: 79 RANKEMNDDF 88
+A +E N +
Sbjct: 85 KAWREKNGKY 94
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LGNDV DE L + FS+YPS +K KVVRD R KT+GFGFVSFKD F++A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKAWR 88
Query: 148 EMN 150
E N
Sbjct: 89 EKN 91
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 167 (63.8 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 37/73 (50%), Positives = 46/73 (63%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+K E +DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F
Sbjct: 168 EKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFG 227
Query: 73 DPQDFIRANKEMN 85
D + RA EMN
Sbjct: 228 DESERSRAMTEMN 240
Score = 163 (62.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 36/69 (52%), Positives = 43/69 (62%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E DF +F GDL +DVTD +L TF S+YPS AKVV D T +KG+GFV F D +
Sbjct: 172 ETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESE 231
Query: 142 FIRANKEMN 150
RA EMN
Sbjct: 232 RSRAMTEMN 240
Score = 78 (32.5 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
I+ + ED ++ GDL + + L FS+ + K++R+K+T +++ +GFV F
Sbjct: 76 IQSSSEDNKT--IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132
Score = 69 (29.3 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F G L ++VTDE L ++F+++ + K+ K G GFV F D
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------GCGFVQFSD 339
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 41/70 (58%), Positives = 51/70 (72%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D NDFR+F GDLGNDVT+E+L + F KYP+FLKAKV+ DK K++GFGFVSF D+I
Sbjct: 196 DPNDFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFDK-VGKSRGFGFVSFSSSSDYI 254
Query: 79 RANKEMNDDF 88
A MN +
Sbjct: 255 SAFNTMNGKY 264
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 39/65 (60%), Positives = 49/65 (75%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+DFR+F GDLGNDVT+E+L + F KYP+FLKAKV+ DK K++GFGFVSF D+I A
Sbjct: 198 NDFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFDK-VGKSRGFGFVSFSSSSDYISA 256
Query: 146 NKEMN 150
MN
Sbjct: 257 FNTMN 261
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 216 (81.1 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 43/86 (50%), Positives = 55/86 (63%)
Query: 5 RPGPISSWIKKTCE--DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
R G W T D RLF G+L + TDE L++ FS++ S K+KV+RDKRTNK
Sbjct: 250 RTGGGKKWADDTLVEWDPTHLRLFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNK 309
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDF 88
+KG+GFVSF DP DF +A KEMN +
Sbjct: 310 SKGYGFVSFSDPDDFFQAAKEMNGKY 335
Score = 208 (78.3 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 38/62 (61%), Positives = 49/62 (79%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF G+L + TDE L++ FS++ S K+KV+RDKRTNK+KG+GFVSF DP DF +A KE
Sbjct: 271 RLFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFFQAAKE 330
Query: 149 MN 150
MN
Sbjct: 331 MN 332
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 164 (62.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 37/73 (50%), Positives = 45/73 (61%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F
Sbjct: 193 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 73 DPQDFIRANKEMN 85
D + RA EMN
Sbjct: 253 DENERSRALTEMN 265
Score = 158 (60.7 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 36/69 (52%), Positives = 42/69 (60%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E D +F GDL DVTD LL TFS +YPS AKVV D T ++KG+GFV F D +
Sbjct: 197 ENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENE 256
Query: 142 FIRANKEMN 150
RA EMN
Sbjct: 257 RSRALTEMN 265
Score = 75 (31.5 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
L+ GDL + + + L FS KV+R+K T++++G+GFV F
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
Score = 61 (26.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G + DV DE L + FS++ + K+ K G GFV F D + A + +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFADRKSAEDAIESL 376
Query: 150 N 150
N
Sbjct: 377 N 377
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 152 (58.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 16 TCED-ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T ED N F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 168 TKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDR 227
Query: 75 QDFIRANKEMNDDF 88
D +A M+ ++
Sbjct: 228 SDAEKALSSMDGEW 241
Score = 146 (56.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 80 ANKE-MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
A KE ++ F +F GDL N+V DE+L + FS + S +A+V+ D +T +++G+GFV+F+D
Sbjct: 167 ATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRD 226
Query: 139 PQDFIRANKEMN 150
D +A M+
Sbjct: 227 RSDAEKALSSMD 238
Score = 88 (36.0 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P ++ ++T + N L+ G L VT+++L + F K++ DK K +G
Sbjct: 70 PGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA-KGYNYG 128
Query: 68 FVSFKDPQDFIRANKEMN 85
FV + DP RA + +N
Sbjct: 129 FVEYDDPGAADRAMQTLN 146
Score = 34 (17.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
P F V + R +GF F+ ++ +A +N +
Sbjct: 320 PLFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGY 360
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 126 (49.4 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G+D+ DE L FSKY L KV+ D T K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 126 (49.4 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV+ D T K+KGFGFVSF+ +D +A +EM
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 108 (43.1 bits), Expect = 0.00088, P = 0.00088
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 89 (36.4 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 86 (35.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 163 (62.4 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 35/76 (46%), Positives = 47/76 (61%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
K+ E+ D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 73 DPQDFIRANKEMNDDF 88
D + RA EMN F
Sbjct: 264 DENERSRAMTEMNGAF 279
Score = 155 (59.6 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
RA+ E D +F GDL DV+D +L+ TF+ +YPS AKVV D T ++KG+GFV F
Sbjct: 205 RAS-ENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 138 DPQDFIRANKEMN 150
D + RA EMN
Sbjct: 264 DENERSRAMTEMN 276
Score = 74 (31.1 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
L+ GDL + + + L FS KV+R+K+T +++G+GFV F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEF 167
Score = 66 (28.3 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
E N+ +F G L DVT+E L++ FS + + K+ K G GFV F + Q
Sbjct: 323 ESNNS-TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK------GCGFVQFANRQSA 375
Query: 143 IRANKEMN 150
A +N
Sbjct: 376 EEAIGNLN 383
>ASPGD|ASPL0000013776 [details] [associations]
symbol:AN3953 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 EMBL:AACD01000064 eggNOG:NOG306795 OrthoDB:EOG469V4H
RefSeq:XP_661557.1 ProteinModelPortal:Q5B677
EnsemblFungi:CADANIAT00004740 GeneID:2873369 KEGG:ani:AN3953.2
HOGENOM:HOG000215409 OMA:AQIAQWQ Uniprot:Q5B677
Length = 353
Score = 203 (76.5 bits), Expect = 5.2e-16, P = 5.2e-16
Identities = 42/87 (48%), Positives = 56/87 (64%)
Query: 4 LRPGPISSWIKKTC-E-DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 61
+R G +W T E D FRLF G+L +VTD+ L + FSKY S KA+V+RDKRT
Sbjct: 206 VRSGGGQTWTDPTLLEWDPAHFRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQ 265
Query: 62 KTKGFGFVSFKDPQDFIRANKEMNDDF 88
K+KG+GFVSF D D+ +A +EM +
Sbjct: 266 KSKGYGFVSFSDGDDYFKAAREMQGKY 292
Score = 195 (73.7 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+L +VTD+ L + FSKY S KA+V+RDKRT K+KG+GFVSF D D+ +A +
Sbjct: 227 FRLFVGNLAGEVTDDSLFKAFSKYTSVQKARVIRDKRTQKSKGYGFVSFSDGDDYFKAAR 286
Query: 148 EM 149
EM
Sbjct: 287 EM 288
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 149 (57.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 34/82 (41%), Positives = 51/82 (62%)
Query: 8 PIS-SWIKKTCEDEND---FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
PI +W T + E+ F +F GDL +VTD L ++FS + S A+V+ D++T ++
Sbjct: 125 PIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRS 184
Query: 64 KGFGFVSFKDPQDFIRANKEMN 85
+GFGFVSF++ QD A EMN
Sbjct: 185 RGFGFVSFRNQQDAQTAINEMN 206
Score = 147 (56.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
++ + F +F GDL +VTD L ++FS + S A+V+ D++T +++GFGFVSF++ QD
Sbjct: 138 EDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQD 197
Query: 142 FIRANKEMN 150
A EMN
Sbjct: 198 AQTAINEMN 206
Score = 79 (32.9 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 83 EMNDDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E N F ++ G+L +VT L R F L A V+ + R + KGFGFV + +
Sbjct: 259 ENNSQFTTVYVGNLAPEVTQLDLHRYFHA----LGAGVIEEVRVQRDKGFGFVRYNTHPE 314
Query: 142 FIRANKEMNEFPHLFVGDLK 161
A + N P+LF +K
Sbjct: 315 AALAIQMGNTQPYLFNRQIK 334
Score = 49 (22.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ G++ VT+ LL F+ +K++R +++ +GFV + D + A +
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAILSL 116
Query: 85 N 85
N
Sbjct: 117 N 117
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 150 (57.9 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/69 (47%), Positives = 43/69 (62%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+D + +F GDL DVTD +L TF S Y S AKVV D+ T ++KG+GFV F D +
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 77 FIRANKEMN 85
+RA EMN
Sbjct: 231 QLRAMTEMN 239
Score = 145 (56.1 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 35/72 (48%), Positives = 43/72 (59%)
Query: 83 EMNDD---FRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
E DD +F GDL DVTD +L TF S Y S AKVV D+ T ++KG+GFV F D
Sbjct: 168 ERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFAD 227
Query: 139 PQDFIRANKEMN 150
+ +RA EMN
Sbjct: 228 ESEQLRAMTEMN 239
Score = 82 (33.9 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 21 NDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
N+ R L+ GDL + + L F + AKV+R+K+T +++G+GF+ F+
Sbjct: 81 NEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFR 133
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 156 (60.0 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 36/74 (48%), Positives = 45/74 (60%)
Query: 14 KKTCEDEN-DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+K E+ D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F
Sbjct: 189 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
Query: 72 KDPQDFIRANKEMN 85
D + +A EMN
Sbjct: 249 GDENERTKAMTEMN 262
Score = 155 (59.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 146 NKEMN 150
EMN
Sbjct: 258 MTEMN 262
Score = 69 (29.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ GDL N + + L F+ + KV+R+K ++G+GFV F+ + +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 83 EMN 85
E N
Sbjct: 165 EFN 167
Score = 63 (27.2 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G L + VTDE L + FS++ + K+ K G GFV F + + A +++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEKL 361
Query: 150 N 150
N
Sbjct: 362 N 362
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 141 (54.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 81 NKEMNDDF 88
EMN +
Sbjct: 213 MTEMNGQY 220
Score = 139 (54.0 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 31/65 (47%), Positives = 40/65 (61%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D +F GDL +VTD +L TF Y S AKVV D+ T ++KG+GFV F D + +RA
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 146 NKEMN 150
EMN
Sbjct: 213 MTEMN 217
Score = 81 (33.6 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
L+ GDL + + ++ F++ AKV+R+K T +++G+GF+ F
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Score = 54 (24.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 80 ANKEMND--DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
AN ND + +F G L +VTD+ L F ++ L K+ KR
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKR 296
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 150 (57.9 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 32/65 (49%), Positives = 40/65 (61%)
Query: 25 LFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+F GDL DVTD +L TF Y S AKVV D+ T ++KG+GFV F D + IRA E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 84 MNDDF 88
MN +
Sbjct: 235 MNGQY 239
Score = 148 (57.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 32/62 (51%), Positives = 39/62 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F GDL DVTD +L TF Y S AKVV D+ T ++KG+GFV F D + IRA E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 149 MN 150
MN
Sbjct: 235 MN 236
Score = 72 (30.4 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
L+ GDL + + L+ F AKV+R+K+ ++G+GF+ F
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEF 128
Score = 42 (19.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR 124
+F G + VT++ L F ++ + K+ KR
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR 314
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 157 (60.3 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 36/74 (48%), Positives = 45/74 (60%)
Query: 14 KKTCEDEN-DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+K E+ D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 72 KDPQDFIRANKEMN 85
D + +A EMN
Sbjct: 247 GDENERTKAMTEMN 260
Score = 156 (60.0 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D +F GDL DV+D LL TFS KYPS AKVV D T ++KG+GFV F D + +A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 146 NKEMN 150
EMN
Sbjct: 256 MTEMN 260
Score = 64 (27.6 bits), Expect = 4.0e-15, Sum P(2) = 4.0e-15
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPS--FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ GDL + + + L +F+ + KV+R+K ++G+GFV F+ + +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 83 EMN 85
E N
Sbjct: 163 EFN 165
Score = 60 (26.2 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G L + VTDE L + F+++ + K+ K G GFV F + + A +++
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEKL 359
Query: 150 N 150
N
Sbjct: 360 N 360
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 150 (57.9 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFK 72
++ N++ +F GDL +V+D L F+ KYP+ +K AKV+ D T K+KGFGFV F
Sbjct: 171 RSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGFVKFH 230
Query: 73 DPQDFIRANKEM 84
P RA KEM
Sbjct: 231 SPDIMNRALKEM 242
Score = 145 (56.1 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFS-KYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDF 142
++++ +F GDL +V+D L F+ KYP+ +K AKV+ D T K+KGFGFV F P
Sbjct: 176 SNEYSIFIGDLAPEVSDAALYNKFNMKYPNQIKQAKVITDSSTRKSKGFGFVKFHSPDIM 235
Query: 143 IRANKEMNEF 152
RA KEM +
Sbjct: 236 NRALKEMQGY 245
Score = 76 (31.8 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLK-AKVVRDKRTNKTKGFGFVSFKDPQDF-- 77
NDF+++ GDL T+E + ++K S K++RD+ + FV+F+D +
Sbjct: 81 NDFQMWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDL 140
Query: 78 -IRAN-KEMNDDFRLF 91
I+ N +++ D R+F
Sbjct: 141 AIQRNGQKVPDSNRVF 156
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 138 (53.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 34/72 (47%), Positives = 41/72 (56%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 81 NKEMNDDFRLFC 92
EMN L+C
Sbjct: 175 MAEMNG---LYC 183
Score = 136 (52.9 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D +F GDL DVTD LL TF Y S AKVV D T ++KG+GFV F + + RA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 146 NKEMN 150
EMN
Sbjct: 175 MAEMN 179
Score = 81 (33.6 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
L+ GDL V + L FS+ + KV+R+K T + +G+GF+ F
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
Score = 57 (25.1 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
+L +VT+E L + FS+ + K+ TKG+G+V FK
Sbjct: 243 NLDQNVTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFK 280
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 135 (52.6 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 18 EDEND-FRLFCGDLGNDVTDELLIRTFSKYPS----FLKAKVVRDKRTNKTKGFGFVSFK 72
ED + F +F GDL +VTD L +FS + S + A+V+ D++T +++GFGFVSF+
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
Query: 73 DPQDFIRANKEMN 85
+ QD A EMN
Sbjct: 202 NQQDAQTAINEMN 214
Score = 135 (52.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPS----FLKAKVVRDKRTNKTKGFGFVSFK 137
++ + F +F GDL +VTD L +FS + S + A+V+ D++T +++GFGFVSF+
Sbjct: 142 EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFR 201
Query: 138 DPQDFIRANKEMN 150
+ QD A EMN
Sbjct: 202 NQQDAQTAINEMN 214
Score = 76 (31.8 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 83 EMNDDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E N F ++ G+L +VT L R F Y L A V+ + R + KGFGFV + +
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLF--YT--LGAGVIEEVRVQRDKGFGFVRYNTHDE 322
Query: 142 FIRANKEMNEFPHLF 156
A + N P LF
Sbjct: 323 AALAIQMGNAQPFLF 337
Score = 47 (21.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ G++ VT+ LL F+ K++R +++ +GFV + D
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFD 109
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 151 (58.2 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
F +F GDL DV++ELL TF+K+ +AKV+RD +T K+KG+GFVSF + Q+ A
Sbjct: 225 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 284
Query: 83 EMN 85
MN
Sbjct: 285 GMN 287
Score = 151 (58.2 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
F +F GDL DV++ELL TF+K+ +AKV+RD +T K+KG+GFVSF + Q+ A
Sbjct: 225 FHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 284
Query: 148 EMN 150
MN
Sbjct: 285 GMN 287
Score = 58 (25.5 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N D+ ++ G++ TD L FS Y + ++ KT+ + FV ++ +
Sbjct: 320 NSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKE 373
Query: 141 DFIRANKEMN 150
+A EMN
Sbjct: 374 CATKAIMEMN 383
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 154 (59.3 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 32/89 (35%), Positives = 54/89 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
++ + F +F GDL +VTD +L FS YP+ A+V+ D++T +++GFGFVSF++ QD
Sbjct: 133 EDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
Query: 142 FIRANKEMNEFPHLFVGDLKTRSSITLKG 170
A ++E ++G + R + KG
Sbjct: 193 ---AQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 145 (56.1 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 18 EDEND-FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED + F +F GDL +VTD +L FS YP+ A+V+ D++T +++GFGFVSF++ QD
Sbjct: 133 EDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQD 192
Score = 59 (25.8 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
++ G+L +V+ L R F L A V+ + R + KGFGFV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRY 304
Score = 45 (20.9 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++ G++ VT+ LL F+ K++R ++++ +GFV + D
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFD 100
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 139 (54.0 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
R+ E + F +F GDL +++ L F K+ +AK++RD TNK KG+GFVS+
Sbjct: 123 RSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPR 182
Query: 139 PQDFIRANKEMN 150
+D RA EMN
Sbjct: 183 REDAERAIDEMN 194
Score = 135 (52.6 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E F +F GDL +++ L F K+ +AK++RD TNK KG+GFVS+ +D
Sbjct: 127 ETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDA 186
Query: 78 IRANKEMN 85
RA EMN
Sbjct: 187 ERAIDEMN 194
Score = 68 (29.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ D+ ++ G++ N DE+ R F ++ + + RT K +G+ FV F+ +
Sbjct: 249 NQAAADNTSVYVGNIANLGEDEIR-RAFDRFGP------INEVRTFKIQGYAFVKFETKE 301
Query: 141 DFIRANKEMN 150
RA +MN
Sbjct: 302 SAARAIVQMN 311
Score = 64 (27.6 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
E+ LF +L +TDE L F++ + +KAK++ + + + FV F D
Sbjct: 37 EDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP---YAFVEFSD 87
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF G+LG D DELL FSKYPS + V D++T+K KGFGFV+F +D++ A +
Sbjct: 56 FRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQ 115
Query: 83 EMNDDF 88
EMN +
Sbjct: 116 EMNGKY 121
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D DELL FSKYPS + V D++T+K KGFGFV+F +D++ A +
Sbjct: 56 FRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQ 115
Query: 148 EMN 150
EMN
Sbjct: 116 EMN 118
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
FRLF G+LG D DELL FSKYPS + V D++T+K KGFGFV+F +D++ A +
Sbjct: 56 FRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQ 115
Query: 83 EMNDDF 88
EMN +
Sbjct: 116 EMNGKY 121
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
FRLF G+LG D DELL FSKYPS + V D++T+K KGFGFV+F +D++ A +
Sbjct: 56 FRLFVGNLGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQ 115
Query: 148 EMN 150
EMN
Sbjct: 116 EMN 118
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 115 (45.5 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 115 (45.5 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 114 (45.2 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 114 (45.2 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00034, P = 0.00034
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 114 (45.2 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 114 (45.2 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 114 (45.2 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 114 (45.2 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L F KY L KV+ D K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 96 (38.9 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 94 (38.1 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + F + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 93 (37.8 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 114 (45.2 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 114 (45.2 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00036, P = 0.00036
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 114 (45.2 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 114 (45.2 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 114 (45.2 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00036, P = 0.00036
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 123 (48.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D ++LF G + + ++E L + FS+Y + L+A V ++K T K +GFGFV F + D ++A
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 146 NKE 148
++
Sbjct: 64 LRD 66
Score = 122 (48.0 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + ++LF G + + ++E L + FS+Y + L+A V ++K T K +GFGFV F + D +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 79 RANKE 83
+A ++
Sbjct: 62 KALRD 66
Score = 87 (35.7 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L ++ T+E F ++ V+ D TN+ +GFGFV++ D +D + +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 149 MNEFPHLFVGDLKTRSSITLKG 170
N F L ++ + +I +G
Sbjct: 180 SN-FHELSDKRVEVKRAIPKEG 200
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 116 (45.9 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 113 (44.8 bits), Expect = 0.00018, P = 0.00018
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ D+ L FSKY + + +V+ D+ K++GFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FSKY + + +V+ D+ K++GFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 104 (41.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ D ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 114 (45.2 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 112 (44.5 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 112 (44.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 114 (45.2 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 112 (44.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 112 (44.5 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00037, P = 0.00037
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 88 (36.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 85 (35.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 114 (45.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 111 (44.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F KY L +V+ D + K+KGFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F KY L +V+ D + K+KGFGFVSF+ +D RA EM
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 0.00035, P = 0.00035
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 98 (39.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 97 (39.2 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 94 (38.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 124 (48.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 76 (31.8 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 72 (30.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 260
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 261 SAAHAIVSVN 270
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 124 (48.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 77 (32.2 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 72 (30.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 260
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 261 SAAHAIVSVN 270
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 124 (48.7 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 77 (32.2 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 72 (30.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 260
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 261 SAAHAIVSVN 270
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 124 (48.7 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 76 (31.8 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 72 (30.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 207 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 260
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 261 SAAHAIVSVN 270
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 129 (50.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 4 LRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 63
+ PG S I T F +F GDL ++V ++ L F + AKV+RD T K+
Sbjct: 120 VEPGQQQSKIDTT----RHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKS 175
Query: 64 KGFGFVSFKDPQDFIRANKEMN 85
KG+GFVS+ ++ RA ++MN
Sbjct: 176 KGYGFVSYPKREEAERAIEQMN 197
Score = 127 (49.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
F +F GDL ++V ++ L F + AKV+RD T K+KG+GFVS+ ++ RA +
Sbjct: 135 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 194
Query: 148 EMN 150
+MN
Sbjct: 195 QMN 197
Score = 69 (29.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L + VT++ + F++ S K KV+ D + + FV F D +A + M
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 85 N 85
N
Sbjct: 105 N 105
Score = 51 (23.0 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ D+ ++ G++ + DE IR + SF + + + R K +G+ FV F +
Sbjct: 234 NQTSGDNTSVYVGNIASLTEDE--IR--QGFASFGR---ITEVRIFKMQGYAFVKFDNKD 286
Query: 141 DFIRANKEMN 150
+A +MN
Sbjct: 287 AAAKAIVQMN 296
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 115 (45.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF
Sbjct: 81 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF
Sbjct: 82 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 135
Score = 64 (27.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 26 FCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
+ G+L DVT+ L+++ FS+ K++ D N + FV F + + A MN
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAMN 59
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 112 (44.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
RL+ + D T+++L F+KY + K++++ DK T K +GFGFV+F D
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
RL+ + D T+++L F+KY + K++++ DK T K +GFGFV+F D
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 105 (42.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E EN ++F G L ++ TD+L+ +S++ V+RD T +++GFGFV+F +
Sbjct: 18 EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEV 77
Query: 78 IRANKE 83
A K+
Sbjct: 78 DAAMKQ 83
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 124 (48.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 77 (32.2 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 70 (29.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++CG + + +T++L+ +TFS + ++ +V DK G+ FV F + A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAAHAIVSV 269
Query: 150 N 150
N
Sbjct: 270 N 270
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 113 (44.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G+D+ D+ L F KY L KV+ D T K++GFGFVS++ +D +A +EM
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 150 N 150
N
Sbjct: 253 N 253
Score = 113 (44.8 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D+ L F KY L KV+ D T K++GFGFVS++ +D +A +EM
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 85 N 85
N
Sbjct: 253 N 253
Score = 110 (43.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D+T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 85 NDD 87
N D
Sbjct: 74 NFD 76
Score = 105 (42.0 bits), Expect = 6.8e-12, Sum P(2) = 6.8e-12
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ ++ ++KGFGFV F P++ +A EM
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 354
Query: 150 N 150
N
Sbjct: 355 N 355
Score = 89 (36.4 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 160 NGMLLNDRKVFVGRFKSR 177
Score = 86 (35.3 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ RA ++M
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 160 NGMLLNDRKVFVG 172
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 124 (48.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 89 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 148
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 149 SFFNKWDAENAIQQM 163
Score = 119 (46.9 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 94 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 153
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 154 WDAENAIQQM 163
Score = 69 (29.3 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++CG + + +T++L+ +TFS + ++ +V DK G+ F+ F + A +
Sbjct: 212 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSV 265
Query: 150 N 150
N
Sbjct: 266 N 266
Score = 68 (29.0 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L DVT+ L+++ FS+ K++ D N + FV F + + A M
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 62
Query: 85 N 85
N
Sbjct: 63 N 63
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 112 (44.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 111 (44.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 112 (44.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 111 (44.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 111 (44.1 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 130 (50.8 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D F LF GDL +V DE L F +PS+L V+ D +T ++G+GFVSF D
Sbjct: 159 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 218
Query: 145 ANKEM 149
A M
Sbjct: 219 AMDSM 223
Score = 129 (50.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 11 SWIKKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
+W ++ + +D F LF GDL +V DE L F +PS+L V+ D +T ++G+GF
Sbjct: 148 NWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGF 207
Query: 69 VSFKDPQDFIRANKEM 84
VSF D A M
Sbjct: 208 VSFTSQDDAQNAMDSM 223
Score = 64 (27.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ +D L+ G+L +T+++L + F K++ DK NK + FV + D
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDAN 129
Query: 79 RANKEMN 85
A + +N
Sbjct: 130 IALQTLN 136
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 124 (48.7 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VTD L F + + + +V RD T ++ G+G+V+F +PQD RA +E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 150 NEFP 153
N P
Sbjct: 98 NYIP 101
Score = 119 (46.9 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VTD L F + + + +V RD T ++ G+G+V+F +PQD RA +E+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 85 N 85
N
Sbjct: 98 N 98
Score = 96 (38.9 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L TD+ L F +Y A V++D K+KGFGFV+F++ D RA + +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 150 N 150
N
Sbjct: 276 N 276
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 82 KEMNDDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
KE D F+ L+ +L ++DE L FS + + +KV+RD +KG GFV+F
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFAT 367
Query: 139 PQDFIRANKEMN 150
P++ A +++
Sbjct: 368 PEEATEAMSQLS 379
Score = 75 (31.5 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + L TFS + + + KV D + ++KG+GFV + + + +A +++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 150 N 150
N
Sbjct: 185 N 185
Score = 75 (31.5 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + + KV D + ++KG+GFV + + + +A +++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 85 N 85
N
Sbjct: 185 N 185
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 112 (44.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00061, P = 0.00061
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 98 (39.6 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 74 (31.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 117 (46.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 68 FVS-FKDPQDFIRANKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
FV FK+ +D + +F ++ + G D+ DE L FSKY L KV+ D +
Sbjct: 168 FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-S 226
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMN 150
K+KGFGFVSF + +A +EMN
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMN 251
Score = 112 (44.5 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L KV+ D + K+KGFGFVSF + +A +EM
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 85 N 85
N
Sbjct: 251 N 251
Score = 108 (43.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL R FS L ++ RD+ T ++ G+ +V+F D +A M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 85 NDD 87
N D
Sbjct: 72 NFD 74
Score = 103 (41.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+L+ +L + + DE L FS + S + KV++++ ++KGFG + F P+D +A E
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 149 MN 150
MN
Sbjct: 352 MN 353
Score = 80 (33.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L FS + L +KV+ D + +K G+ FV F++ RA +EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEM 157
Query: 150 N----EFPHLFVGDLKTR 163
N + +FVG K R
Sbjct: 158 NGKLLKGCKVFVGRFKNR 175
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 112 (44.5 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00067, P = 0.00067
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 124 (48.7 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS + T ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFV
Sbjct: 93 SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 70 SFKDPQDFIRANKEM 84
SF + D A ++M
Sbjct: 153 SFFNKWDAENAIQQM 167
Score = 119 (46.9 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + D F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF +
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 140 QDFIRANKEM 149
D A ++M
Sbjct: 158 WDAENAIQQM 167
Score = 77 (32.2 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 112 (44.5 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00068, P = 0.00068
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 114 (45.2 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 153
Query: 85 N 85
N
Sbjct: 154 N 154
Score = 114 (45.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 153
Query: 150 N 150
N
Sbjct: 154 N 154
Score = 103 (41.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 255
Query: 150 N 150
N
Sbjct: 256 N 256
Score = 85 (35.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 61 NGMLLNDRKVFVG 73
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 116 (45.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL VTD L F++ + +V RD T ++ G+G+V++ PQD RA E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 85 N 85
N
Sbjct: 107 N 107
Score = 116 (45.9 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL VTD L F++ + +V RD T ++ G+G+V++ PQD RA E+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 150 N 150
N
Sbjct: 107 N 107
Score = 101 (40.6 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 75 QDFIRANKEMNDDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
Q F ++ KE D + L+ +L VTD+ L F+ + + KV+RD + ++G
Sbjct: 311 QKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGS 369
Query: 132 GFVSFKDPQDFIRANKEMN 150
GFV+F P++ RA EMN
Sbjct: 370 GFVAFSTPEEATRAITEMN 388
Score = 87 (35.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L ++DE L + F ++ ++RD K+KGFGFV+F++ D RA +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 150 N----EFPHLFVGDLKTRS 164
N + FVG + +S
Sbjct: 285 NGKTFDDKEWFVGKAQKKS 303
Score = 67 (28.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+F +L + + L TFS + L KV D + ++KG+GFV +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQY 180
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 117 (46.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/85 (37%), Positives = 46/85 (54%)
Query: 68 FVS-FKDPQDFIRANKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
FV FK+ +D + +F ++ + G D+ DE L FSKY L KV+ D +
Sbjct: 226 FVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-S 284
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMN 150
K+KGFGFVSF + +A +EMN
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMN 309
Score = 112 (44.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L FSKY L KV+ D + K+KGFGFVSF + +A +EM
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 85 N 85
N
Sbjct: 309 N 309
Score = 108 (43.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL R FS L ++ RD+ T ++ G+ +V+F D +A M
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 85 NDD 87
N D
Sbjct: 130 NFD 132
Score = 108 (43.1 bits), Expect = 0.00051, P = 0.00051
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 81 NKEMN--DDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
+KEMN +R L+ GDL DVT++LL R FS L ++ RD+ T ++ G+ +V+
Sbjct: 56 DKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVN 115
Query: 136 FKDPQDFIRANKEMN 150
F D +A MN
Sbjct: 116 FLQLADAQKALDTMN 130
Score = 103 (41.3 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+L+ +L + + DE L FS + S + KV++++ ++KGFG + F P+D +A E
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 409
Query: 149 MN 150
MN
Sbjct: 410 MN 411
Score = 80 (33.2 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L FS + L +KV+ D + +K G+ FV F++ RA +EM
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEEM 215
Query: 150 N----EFPHLFVGDLKTR 163
N + +FVG K R
Sbjct: 216 NGKLLKGCKVFVGRFKNR 233
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 109 (43.4 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 85 N 85
N
Sbjct: 85 N 85
Score = 109 (43.4 bits), Expect = 0.00015, P = 0.00015
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 150 N 150
N
Sbjct: 85 N 85
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 186
Query: 150 N 150
N
Sbjct: 187 N 187
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 115 (45.5 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 85 N 85
N
Sbjct: 292 N 292
Score = 115 (45.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 150 N 150
N
Sbjct: 292 N 292
Score = 103 (41.3 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 393
Query: 150 N 150
N
Sbjct: 394 N 394
Score = 85 (35.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 198
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 199 NGMLLNDRKVFVG 211
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 108 (43.1 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
++F G L D T+ + + F KY + ++RD+ T + +GFGF++F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 108 (43.1 bits), Expect = 0.00039, P = 0.00039
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
++F G L D T+ + + F KY + ++RD+ T + +GFGF++F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 106 (42.4 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
++F G + + VT++ L F+KY + ++ +V+RD TN+++GFGFV F D ++ +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF-DSEEVV 163
Score = 106 (42.4 bits), Expect = 0.00072, P = 0.00072
Identities = 20/55 (36%), Positives = 38/55 (69%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
++F G + + VT++ L F+KY + ++ +V+RD TN+++GFGFV F D ++ +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF-DSEEVV 163
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 83 EMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
EM +F ++ ++ +VTD+ F KY + + RD+ T K++GFGFV+F +D
Sbjct: 236 EMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHED 295
Query: 142 FIRANKEMNE--F--PHLFVG 158
+A +E+NE F +L+VG
Sbjct: 296 ASKAVQELNEKEFHGQNLYVG 316
Score = 111 (44.1 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N ++ ++ +VTD+ F KY + + RD+ T K++GFGFV+F +D +A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 81 NKEMND 86
+E+N+
Sbjct: 300 VQELNE 305
Score = 91 (37.1 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L VT+ +L FS+ S +V RD T ++ G+ +V++ D +A +E+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 85 N 85
N
Sbjct: 123 N 123
Score = 76 (31.8 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TF+ + + L KV +D+ N +KG+GFV ++ + +A K +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 85 N 85
N
Sbjct: 210 N 210
Score = 76 (31.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TF+ + + L KV +D+ N +KG+GFV ++ + +A K +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHV 209
Query: 150 N 150
N
Sbjct: 210 N 210
Score = 75 (31.5 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 124 RTNKTKGFGFVSFKDPQDFIRANKEMNE 151
+ K+KGFGFV F +P D +A EMN+
Sbjct: 428 KLGKSKGFGFVCFANPDDATKAVAEMNQ 455
Score = 61 (26.5 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
L+ +L ++V DE L + FS++ AKV+RD T
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
K+ E + LF GDL VT+E L F KYPSF+ AKV D T K+ G G+++F+D
Sbjct: 83 KSFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDK 142
Query: 75 QDFIRANKEMN 85
++ +A +E+N
Sbjct: 143 EEAEKAMEELN 153
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF GDL VT+E L F KYPSF+ AKV D T K+ G G+++F+D ++ +A +E+
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 150 N 150
N
Sbjct: 153 N 153
Score = 51 (23.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 99 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+T + TFS+Y L K+ D R K GFV F+D
Sbjct: 193 LTTRVFYDTFSRYGKILSCKL--DSR----KDIGFVYFED 226
Score = 40 (19.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 131 FGFVSFKDPQDFIRANKEMNEF 152
+ FV++K+ D +A K N F
Sbjct: 344 WAFVTYKNSSDSEKAIKRYNNF 365
Score = 35 (17.4 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGDLKTRS 164
N + GF+ F++ +D R +N L G + T S
Sbjct: 431 NSSTYSGFIKFRNFEDATRIFNFLNN--RLVGGSIVTTS 467
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 120 (47.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 89 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 148
Query: 142 FIRANKEM 149
A ++M
Sbjct: 149 AENAIQQM 156
Score = 119 (46.9 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 78 IRANKEM 84
A ++M
Sbjct: 150 ENAIQQM 156
Score = 77 (32.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 64 (27.6 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
N+ + ++CG + + +T++L+ +TFS + ++ +V DK
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 112 (44.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 85 N 85
N
Sbjct: 181 N 181
Score = 112 (44.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD + K+KGFGFVS++ +D +A +EM
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 150 N 150
N
Sbjct: 181 N 181
Score = 103 (41.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 282
Query: 150 N 150
N
Sbjct: 283 N 283
Score = 85 (35.0 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+ FV F+ + +A ++M
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 87
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 88 NGMLLNDRKVFVG 100
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 109 (43.4 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 108 (43.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL D T+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 100 (40.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 98 (39.6 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 95 (38.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 112 (44.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 0.00066, P = 0.00066
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 103 (41.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F +Y + L KV+ D K++GFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 103 (41.3 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F +Y + L KV+ D K++GFGFVSF+ +D +A +M
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 100 (40.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + F+ + S AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 96 (38.9 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGRFKSR 176
Score = 93 (37.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA +M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 118 (46.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 68 FVSFKDPQDFIRAN-KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN 126
F S +D Q + A KE + ++ +LG D+ DE L FS++ L KV+ D+ +
Sbjct: 173 FKSRRDRQAELGARAKEFTN---VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SG 228
Query: 127 KTKGFGFVSFKDPQDFIRANKEMN 150
K+KGFGFVSF+ +D +A EMN
Sbjct: 229 KSKGFGFVSFERHEDARKAVDEMN 252
Score = 114 (45.2 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +LG D+ DE L FS++ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 105 (42.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD+ T ++ G+ V+F+ +D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 101 (40.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMFLNDRKVFVGRFKSR 176
Score = 99 (39.9 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV + ++KGFGFV F P++ +A EM
Sbjct: 306 LYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 150 N 150
N
Sbjct: 364 N 364
Score = 98 (39.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + L TFS + + L KVV D+ N +KG+GFV F+ ++ RA ++M
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMFLNDRKVFVG 171
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 111 (44.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 85 N 85
N
Sbjct: 84 N 84
Score = 111 (44.1 bits), Expect = 0.00023, P = 0.00023
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 150 N 150
N
Sbjct: 84 N 84
Score = 100 (40.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 185
Query: 150 N 150
N
Sbjct: 186 N 186
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 110 (43.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 85 NDD 87
N D
Sbjct: 64 NFD 66
Score = 107 (42.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 85 (35.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG + ++ L FS + + L KV D++ KG+GFV F+ + RA +
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDAL 149
Query: 150 N----EFPHLFVGDLKT 162
N + +FVG K+
Sbjct: 150 NGMFLNYRKIFVGRFKS 166
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 112 (44.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 112 (44.5 bits), Expect = 0.00025, P = 0.00025
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS + L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 100 (40.3 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + D+ L FS Y AKV+ + ++ +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 92 (37.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 88 (36.0 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L N + ++ L TFS + S L +KVV ++ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 74 (31.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L D+ ++ L FS++ KV+RD +++GFGF++F+ ++ +A M
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 74 (31.1 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L D+ ++ L FS++ KV+RD +++GFGF++F+ ++ +A M
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHM 251
Query: 85 N 85
N
Sbjct: 252 N 252
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 108 (43.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDD 87
N D
Sbjct: 64 NFD 66
Score = 105 (42.0 bits), Expect = 0.00025, P = 0.00025
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 88 (36.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG + ++ L FS + + L KV D++ KG+GFV F+ + RA M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDAM 149
Query: 150 N----EFPHLFVGDLKT 162
N + +FVG K+
Sbjct: 150 NGMFLNYRKIFVGRFKS 166
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 108 (43.1 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDD 87
N D
Sbjct: 64 NFD 66
Score = 105 (42.0 bits), Expect = 0.00025, P = 0.00025
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 88 (36.0 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG + ++ L FS + + L KV D++ KG+GFV F+ + RA M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDAM 149
Query: 150 N----EFPHLFVGDLKT 162
N + +FVG K+
Sbjct: 150 NGMFLNYRKIFVGRFKS 166
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
M+D+ +LF G L D T++ L FSKY + K V+RD+ T++++GFGFV+F++P+D
Sbjct: 19 MSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 78
Query: 144 RANKEMN 150
A MN
Sbjct: 79 DAMAAMN 85
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 27/62 (43%), Positives = 41/62 (66%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D T++ L FSKY + K V+RD+ T++++GFGFV+F++P+D A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 84 MN 85
MN
Sbjct: 84 MN 85
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 111 (44.1 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 85 N 85
N
Sbjct: 188 N 188
Score = 111 (44.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 150 N 150
N
Sbjct: 188 N 188
Score = 100 (40.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 289
Query: 150 N 150
N
Sbjct: 290 N 290
Score = 95 (38.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 95 NGMLLNDRKVFVG 107
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 120 (47.3 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 89 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 148
Query: 142 FIRANKEM 149
A ++M
Sbjct: 149 AENAIQQM 156
Score = 119 (46.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 78 IRANKEM 84
A ++M
Sbjct: 150 ENAIQQM 156
Score = 77 (32.2 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 AAALAAMN 67
Score = 69 (29.3 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 15/61 (24%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++CG + + +T++L+ +TFS + ++ +V DK G+ F+ F + A +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSV 258
Query: 150 N 150
N
Sbjct: 259 N 259
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 108 (43.1 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDD 87
N D
Sbjct: 64 NFD 66
Score = 105 (42.0 bits), Expect = 0.00025, P = 0.00025
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 87 (35.7 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG + ++ L FS + + L KV D++ KG+GFV F+ + RA M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVM 149
Query: 150 N----EFPHLFVGDLKT 162
N + +FVG K+
Sbjct: 150 NGMFLNYRKIFVGRFKS 166
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 109 (43.4 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 0.00015, P = 0.00015
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 92 (37.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNGRKVFVGQFKSR 176
Score = 91 (37.1 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RD T+ + + +V+F+ +D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 84 (34.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 85 N 85
N
Sbjct: 159 N 159
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 120 (47.3 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 89 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 148
Query: 142 FIRANKEM 149
A ++M
Sbjct: 149 AENAIQQM 156
Score = 119 (46.9 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 90 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 149
Query: 78 IRANKEM 84
A ++M
Sbjct: 150 ENAIQQM 156
Score = 76 (31.8 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
EDE L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFYEHRHA 59
Query: 78 IRANKEMN 85
A MN
Sbjct: 60 ASALAAMN 67
Score = 72 (30.4 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 196 NQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHE 249
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 250 SAAHAIVSVN 259
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 130 (50.8 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ +F GDLG +V + +L+ F S++PS AK++ D + ++G+GFV F D D RA
Sbjct: 159 EYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRA 218
Query: 81 NKEMNDDFRLFCGD 94
EM ++CG+
Sbjct: 219 LSEMQG---VYCGN 229
Score = 129 (50.5 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
R+ + ++ +F GDLG +V + +L+ F S++PS AK++ D + ++G+GFV F
Sbjct: 151 RSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFS 210
Query: 138 DPQDFIRANKEM 149
D D RA EM
Sbjct: 211 DENDQQRALSEM 222
Score = 51 (23.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK-GFGFVSFKDP 74
+E L+ G+L + + + + + + K++RDK + ++ G+ FV F P
Sbjct: 61 NEGKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASP 117
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 106 (42.4 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 85 NDD 87
N D
Sbjct: 64 NFD 66
Score = 103 (41.3 bits), Expect = 0.00048, P = 0.00048
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +VT+ +L FS L ++ RDK T ++ G+ +V+++ P D RA + +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 150 N 150
N
Sbjct: 64 N 64
Score = 88 (36.0 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG + ++ L FS + + L KV D++ KG+GFV F+ + RA M
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDAM 149
Query: 150 N----EFPHLFVGDLKT 162
N + +FVG K+
Sbjct: 150 NGMFLNYRKIFVGRFKS 166
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 109 (43.4 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 101 (40.6 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 92 (37.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNGRKVFVGQFKSR 176
Score = 91 (37.1 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RD T+ + + +V+F+ +D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 84 (34.6 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 85 N 85
N
Sbjct: 159 N 159
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 110 (43.8 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF +L + V DE L F+ Y + AKV+R + K+KGFGFV F P++ +A E
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEK 382
Query: 150 NE 151
N+
Sbjct: 383 NQ 384
Score = 108 (43.1 bits), Expect = 0.00079, P = 0.00079
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF +L + V DE L F+ Y + AKV+R + K+KGFGFV F P++ +A E
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEK 382
Query: 85 N 85
N
Sbjct: 383 N 383
Score = 98 (39.6 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ ++ ++ TDE F+K+ + A + +D K KGFGFV+++ +D ++A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 85 ND 86
ND
Sbjct: 280 ND 281
Score = 94 (38.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ ++ ++ TDE F+K+ + A + +D K KGFGFV+++ +D ++A + +
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 150 NE 151
N+
Sbjct: 280 ND 281
Score = 87 (35.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+F +L D+ ++ L TFS + L +K+ D+ K+KGFGFV F++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEE 175
Score = 87 (35.7 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+F +L D+ ++ L TFS + L +K+ D+ K+KGFGFV F++
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEE 175
Score = 77 (32.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL V++ L FS S +V RD T + G+ +V+F D + +A +++
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 85 N 85
N
Sbjct: 100 N 100
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 109 (43.4 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 85 N 85
N
Sbjct: 207 N 207
Score = 109 (43.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 150 N 150
N
Sbjct: 207 N 207
Score = 100 (40.3 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 308
Query: 150 N 150
N
Sbjct: 309 N 309
Score = 98 (39.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 113
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 114 NGMLLNDRKVFVGRFKSR 131
Score = 95 (38.5 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA ++M
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 113
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 114 NGMLLNDRKVFVG 126
Score = 55 (24.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 60 TNKTKGFGFVSFKDPQDFIRANKEMNDD 87
T ++ G+ +V+F+ P D RA MN D
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFD 30
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 118 (46.6 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 106
Score = 118 (46.6 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 106
Score = 72 (30.4 bits), Expect = 9.4e-11, Sum P(2) = 9.4e-11
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 197
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 153 (58.9 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 50/143 (34%), Positives = 71/143 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
N D G V I + PS K+ VV D+ N +KG+GFV F+ + R
Sbjct: 73 NFDVIK-----GKPVR----IMWSQRDPSLRKSGVVCDE--NGSKGYGFVHFETQEAAER 121
Query: 145 ANKEMNEF----PHLFVGDLKTR 163
A ++MN +FVG K+R
Sbjct: 122 AIEKMNGMLLNDRKVFVGRFKSR 144
Score = 109 (43.4 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 85 N 85
N
Sbjct: 220 N 220
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 150 N 150
N
Sbjct: 220 N 220
Score = 100 (40.3 bits), Expect = 9.6e-11, Sum P(2) = 9.6e-11
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 321
Query: 150 N 150
N
Sbjct: 322 N 322
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 120 (47.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 85 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 144
Query: 142 FIRANKEM 149
A ++M
Sbjct: 145 AENAIQQM 152
Score = 119 (46.9 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 86 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 145
Query: 78 IRANKEM 84
A ++M
Sbjct: 146 ENAIQQM 152
Score = 68 (29.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L DVT+ L+++ FS+ K++ D N + FV F + + A M
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAAM 62
Query: 85 N 85
N
Sbjct: 63 N 63
Score = 62 (26.9 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
++CG + + +T++L+ +TFS + ++ +V DK
Sbjct: 201 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 234
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 115 (45.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/67 (43%), Positives = 35/67 (52%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D LF L D D LI TF+ + L AKV DK TN +K FGFVS+++ Q A
Sbjct: 501 DGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNA 560
Query: 146 NKEMNEF 152
MN F
Sbjct: 561 ISAMNGF 567
Score = 108 (43.1 bits), Expect = 0.00081, P = 0.00081
Identities = 27/61 (44%), Positives = 33/61 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF L D D LI TF+ + L AKV DK TN +K FGFVS+++ Q A M
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 85 N 85
N
Sbjct: 565 N 565
Score = 89 (36.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E+ N+ +LF G L +E L F+K+ V+RD+ K++G FV+F +
Sbjct: 137 ENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCA 195
Query: 78 IRANKEMN 85
+ A KEM+
Sbjct: 196 VVATKEMH 203
Score = 88 (36.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + ++F G + + R F KY S ++RDK T +KG FV+F +D I
Sbjct: 51 DTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAI 110
Query: 79 RANKEMND 86
A +++
Sbjct: 111 EAQGALHN 118
Score = 85 (35.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
A+ E ++ +LF G L +E L F+K+ V+RD+ K++G FV+F +
Sbjct: 134 ADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNR 192
Query: 140 QDFIRANKEMN 150
+ A KEM+
Sbjct: 193 SCAVVATKEMH 203
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 110 (43.8 bits), Expect = 0.00021, P = 0.00021
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 68 FVS-FKDPQDFIRANKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 125
FV+ FK +D +E +F ++ + G+D+ DE L FSKY L KV++D +
Sbjct: 168 FVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-S 226
Query: 126 NKTKGFGFVSFKDPQDFIRANKEMN 150
K+K FGFVSF + A ++MN
Sbjct: 227 GKSKRFGFVSFDSHKAAKNAVEDMN 251
Score = 109 (43.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT++LL R F+ L ++ RD ++++ G+G+V+F D +A + M
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 85 NDD 87
N D
Sbjct: 72 NFD 74
Score = 106 (42.4 bits), Expect = 0.00076, P = 0.00076
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT++LL R F+ L ++ RD ++++ G+G+V+F D +A + M
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 150 N 150
N
Sbjct: 72 N 72
Score = 102 (41.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ DE L FSKY L KV++D + K+K FGFVSF + A ++M
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDM 250
Query: 85 N 85
N
Sbjct: 251 N 251
Score = 93 (37.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+L+ +L + + DE L + FS + S + KV+++ ++KGFG + F P+ +A E
Sbjct: 294 KLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE--AGQSKGFGLICFFSPEAAAKAMAE 351
Query: 149 MN 150
MN
Sbjct: 352 MN 353
Score = 86 (35.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L FS + + +KV+ D+ +K G+GFV ++D + RA +EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSK--GYGFVHYQDQRAADRAIEEM 157
Query: 150 N----EFPHLFVGDLKTR 163
N LFV K+R
Sbjct: 158 NGKLLRDSTLFVARFKSR 175
Score = 84 (34.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L FS + + +KV+ D+ +K G+GFV ++D + RA +EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSK--GYGFVHYQDQRAADRAIEEM 157
Query: 85 N 85
N
Sbjct: 158 N 158
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 109 (43.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 99 (39.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS Y AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 85 (35.0 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 85 (35.0 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 85 (35.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A M
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 81 (33.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ + ++GFGFV F+ + A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 118 (46.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 91 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150
Score = 117 (46.2 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150
Score = 77 (32.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +N + FV F + +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 77 FIRANKEMN 85
A MN
Sbjct: 61 AAAALAAMN 69
Score = 73 (30.8 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 251
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 252 SAAHAIVSVN 261
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 91 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150
Score = 117 (46.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150
Score = 77 (32.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +N + FV F + +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 77 FIRANKEMN 85
A MN
Sbjct: 61 AAAALAAMN 69
Score = 73 (30.8 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 251
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 252 SAAHAIVSVN 261
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 109 (43.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 0.00068, P = 0.00068
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 99 (39.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS Y AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 87 (35.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 87 (35.7 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV ++ L FS++ L KV+RD + ++GFGFV+F+ ++ +A +M
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 83 (34.3 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 79 (32.9 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|K7EML2 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000586618 Uniprot:K7EML2
Length = 184
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 52 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDF 88
AKV+RDKRT KTKG+GFVSFKDP D++RA +EMN +
Sbjct: 114 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKY 150
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 117 AKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHLFVGD--LKTRSSI 166
AKV+RDKRT KTKG+GFVSFKDP D++RA +EMN +VG +K R S+
Sbjct: 114 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNG---KYVGSRPIKLRKSM 162
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/138 (28%), Positives = 67/138 (48%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ--DFIRAN 81
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP + A+
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 82 KEMNDDFR--------------LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 127
+ D R +F G + ++ + L F K+ + ++ D +
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 130
Query: 128 TKGFGFVSFKDPQDFIRA 145
+GFGF++F+D Q +A
Sbjct: 131 PRGFGFITFEDEQSVDQA 148
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 109 (43.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 109 (43.4 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F K+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 92 (37.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNGRKVFVGQFKSR 176
Score = 91 (37.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L ++ RD T+ + + +V+F+ +D A M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 86 (35.3 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
Score = 84 (34.6 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L T S + + L VV D+ N +KG+GFV F+ + RA K+M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 85 N 85
N
Sbjct: 159 N 159
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 110 (43.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G L +D+ ++ L FS++ + KA+V+ DK T K +GFGFV F+D
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFED 151
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
++F G L +D+ ++ L FS++ + KA+V+ DK T K +GFGFV F+D
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFED 151
Score = 87 (35.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 16 TCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
T + EN +LF G L TD+ L F +Y VV++++ +++ FGFV++ P
Sbjct: 2 TAQMENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSP 61
Query: 75 QD 76
+
Sbjct: 62 DE 63
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 109 (43.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 0.00063, P = 0.00063
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 97 (39.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + F+ Y AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 91 (37.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L DV + L FS++ L KV+RD + ++GFGFV+F+ +D +A +M
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 91 (37.1 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L DV + L FS++ L KV+RD + ++GFGFV+F+ +D +A +M
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 84 (34.6 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + A + M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 80 (33.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D + ++GFGFV F+ + A + M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 107 (42.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 100 (40.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G+ + D+ L F ++ L KV+ D+ K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 150 N--EF--PHLFVG 158
N E H++VG
Sbjct: 252 NGKELNGKHIYVG 264
Score = 97 (39.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + KV+ + ++KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 95 (38.5 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ N +KG GFV F+ + RA ++M
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGQFKSR 176
Score = 95 (38.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+ + D+ L F ++ L KV+ D+ K+KGFGFVSF+ +D +A EM
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 117 (46.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+ +D ++F G L + TD+ L FS++ + V+RD T +++GFGF++FKDP+
Sbjct: 106 IKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
Score = 116 (45.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
GP+ + + D ++F G L + TD+ L FS++ + V+RD T +++GF
Sbjct: 94 GPVGEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
Query: 67 GFVSFKDPQ 75
GF++FKDP+
Sbjct: 154 GFLTFKDPK 162
Score = 83 (34.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
DP+ I + E ++F G + + T++ + F ++ + A ++ DK T + +GFG
Sbjct: 180 DPKRAIPRD-EQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFG 238
Query: 133 FVSFKDPQDFIRA 145
FV+F D + + A
Sbjct: 239 FVTF-DSEAAVEA 250
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 118 (46.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 51
Score = 118 (46.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 51
Score = 75 (31.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + N ++F G + ++ + L F K+ + ++ D + +GFGF++F+D
Sbjct: 95 SRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 154
Query: 140 QDFIRA 145
Q +A
Sbjct: 155 QSVDQA 160
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 105 (42.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DV + +L FS L +V RD T + G+ +V+F+ P D RA M
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 85 N 85
N
Sbjct: 94 N 94
Score = 102 (41.0 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L V D+ L + F Y + AKV+ D+ ++KGFGFV F+ P++ A EM
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEM 377
Query: 150 N 150
N
Sbjct: 378 N 378
Score = 78 (32.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+ E L + F+K+ + +V+ + K+KGFGFV+F +P++ A + +
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE--GKSKGFGFVAFANPEEAETAVQAL 272
Query: 85 ND 86
+D
Sbjct: 273 HD 274
Score = 77 (32.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 81 NKEMNDDFRLFCG----DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
N+E+ + + F + G+ E L + F+K+ + +V+ + K+KGFGFV+F
Sbjct: 202 NRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVE--GKSKGFGFVAF 259
Query: 137 KDPQD 141
+P++
Sbjct: 260 ANPEE 264
Score = 69 (29.3 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ + TFS + + L KV D+ +KG+GFV F+ + A +++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 150 NEF----PHLFVGDLKTRS 164
N +FVG + R+
Sbjct: 181 NGMLLAGKKVFVGKFQPRA 199
Score = 66 (28.3 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ + TFS + + L KV D+ +KG+GFV F+ + A +++
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 85 N 85
N
Sbjct: 181 N 181
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 118 (46.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 118 (46.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 105 (42.0 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD + ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 101 (40.6 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS Y + AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 100 (40.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G+D+ D L FS++ L KV+ D T ++KGFGFV+F+ ++ +A +M
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 100 (40.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G+D+ D L FS++ L KV+ D T ++KGFGFV+F+ ++ +A +M
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 92 (37.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KVV D+ N ++G GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 88 (36.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KVV D+ N ++G GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 113 (44.8 bits), Expect = 0.00012, P = 0.00012
Identities = 28/96 (29%), Positives = 51/96 (53%)
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMN-DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKV 119
N++ G + + +D N +D ++F G L + TD+ L F ++ L V
Sbjct: 135 NQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTV 194
Query: 120 VRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEFPHL 155
+RD T +++GFGF++FK+P+ N+ M++ HL
Sbjct: 195 MRDSTTGRSRGFGFLTFKNPKC---VNEVMSKEHHL 227
Score = 108 (43.1 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
+ D ++F G L + TD+ L F ++ L V+RD T +++GFGF++FK+P+
Sbjct: 159 NREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK 215
Score = 93 (37.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
DP+ I +E ++F G + D T+E F+++ L A ++ DK T + +GFG
Sbjct: 233 DPKRAI-PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 133 FVSFKD 138
FV++++
Sbjct: 292 FVTYEN 297
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 118 (46.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 107 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 166
Score = 117 (46.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 166
Score = 73 (30.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 62 SNDPYCFV 69
Score = 73 (30.8 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 214 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 267
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 268 SAAHAIVSVN 277
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 118 (46.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 118 (46.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 118 (46.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 118 (46.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 118 (46.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 117 (46.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T E + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167
Score = 73 (30.8 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRD----KRTNKTKGFGFVSF- 71
ED+ R L+ G+L DVT+ L+++ FS+ K++ + +R N + GF +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 72 -KDPQDFI 78
DP F+
Sbjct: 63 SNDPYCFV 70
Score = 73 (30.8 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHE 268
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 269 SAAHAIVSVN 278
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 154 (59.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 35/87 (40%), Positives = 52/87 (59%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
G + +I KT + + LF G+L + VT+E+L + F +Y SF AKV RD T K+ G+
Sbjct: 98 GSVQKYITKTSKTNS---LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGY 154
Query: 67 GFVSFKDPQDFIRANKEMNDDFRLFCG 93
G+++FKD D A KE N + +F G
Sbjct: 155 GYLNFKDKNDAESARKEFN--YTVFFG 179
Score = 145 (56.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 75 QDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 134
Q +I + N LF G+L + VT+E+L + F +Y SF AKV RD T K+ G+G++
Sbjct: 101 QKYITKTSKTNS---LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYL 157
Query: 135 SFKDPQDFIRANKEMNEFPHLFVGDLKTRSSI 166
+FKD D A KE N + F ++K S+
Sbjct: 158 NFKDKNDAESARKEFN-YTVFFGQEVKIMPSM 188
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 106 (42.4 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 98 (39.6 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + D+ L + FS Y + AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ D+ L FS + + L KV+ D T +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 94 (38.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D T +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 88 (36.0 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 84 (34.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 118 (46.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 51
Score = 118 (46.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 51
Score = 72 (30.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 107 (42.7 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
RA + FR++ G+L DV + L + FS++ ++A+VV D+ T +++GFGFV+ D
Sbjct: 235 RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Query: 139 PQDFIRA 145
+ A
Sbjct: 295 VDELNEA 301
Score = 105 (42.0 bits), Expect = 0.00083, P = 0.00083
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E FR++ G+L DV + L + FS++ ++A+VV D+ T +++GFGFV+ D +
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 80 A 80
A
Sbjct: 301 A 301
Score = 88 (36.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + +LF G+L DV + L F + + A+V+ ++ T++++GFGFV+ +
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 78 IRANKEMN 85
A ++ N
Sbjct: 205 ETAVEKFN 212
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 105 (42.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
++F G L D T++ L F KY + K+++D T +++GFGF+SF+ P
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKP 210
Score = 97 (39.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
DP+ I + E + ++F G +G DV + FS++ + + A+++ DK T +++GFG
Sbjct: 229 DPKRAIPRD-EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFG 287
Query: 133 FVSFK--DPQDFIRANK 147
FV++ D D + NK
Sbjct: 288 FVTYDSADAVDRVCQNK 304
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 118 (46.6 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 169
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 118 (46.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 118 (46.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 118 (46.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 118 (46.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 118 (46.6 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 72 (30.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F K+ + ++ D + +GFGF++F+D Q +A
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 122 (48.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 81 NKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
N + D+ +LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 2 NNQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 118 (46.6 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Score = 70 (29.7 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++F G + ++ + L F+++ + ++ D + +GFGF++F+D Q +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 171
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 112 (44.5 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 8 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 67
Query: 85 NDD 87
N D
Sbjct: 68 NFD 70
Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 8 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 67
Query: 150 N 150
N
Sbjct: 68 N 68
Score = 63 (27.2 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 115 LKAK-VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF----PHLFVGDLKTR 163
+K K VV D+ N +KG+GFV F+ + RA ++MN +FVG K+R
Sbjct: 72 IKGKPVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 123
Score = 50 (22.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 123
++ + G D+ DE L F K+ L KV+ D+
Sbjct: 140 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 173
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 105 (42.0 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D + +LF G + + ++ L F+ Y +A V+RDK T + +GFGFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 79 RANKE 83
R +E
Sbjct: 62 RVLQE 66
Score = 93 (37.8 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
N ++F G L +TDE + F Y ++ D+ TN+ +GFGFVSF D +D +
Sbjct: 107 NKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAV 164
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 110 (43.8 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 78 IRANKE--MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 135
IR N ++ +++ G+LG ++T + L F P L AKV+ ++ T +++GFGF+S
Sbjct: 207 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFIS 266
Query: 136 FKDPQDFIRANKEMN 150
F+ ++ A MN
Sbjct: 267 FESAENVQSALATMN 281
Score = 109 (43.4 bits), Expect = 0.00025, P = 0.00025
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ +++ G+LG ++T + L F P L AKV+ ++ T +++GFGF+SF+ ++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 80 ANKEMN 85
A MN
Sbjct: 276 ALATMN 281
Score = 82 (33.9 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
RL+ G+L +T L + F + + + ++V DK T++++GFGFV+ ++ A +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 84 MN 85
N
Sbjct: 177 FN 178
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 100 (40.3 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + FS + + AKV+ + ++KGFGFV F P++ +A EM
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 222
Query: 150 N 150
N
Sbjct: 223 N 223
Score = 94 (38.1 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ DE L F P+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 65 VYIKNFGEDMDDERLKDLFG--PA-LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 85 N 85
N
Sbjct: 121 N 121
Score = 94 (38.1 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ DE L F P+ L KV+ D+ + K+KGFGFVSF+ +D +A EM
Sbjct: 65 VYIKNFGEDMDDERLKDLFG--PA-LSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 150 N 150
N
Sbjct: 121 N 121
Score = 57 (25.1 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 54 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----DDFRLFCG 93
VV D+ N +KG+GFV F+ + RA ++MN +D ++F G
Sbjct: 2 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 43
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 116 (45.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL +++ + + F+ + A+VV+D T K+KG+GF+SF + D
Sbjct: 91 KDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWD 150
Query: 142 FIRANKEMN 150
A ++MN
Sbjct: 151 AESAIQQMN 159
Score = 115 (45.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL +++ + + F+ + A+VV+D T K+KG+GF+SF + D
Sbjct: 92 DTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDA 151
Query: 78 IRANKEMN 85
A ++MN
Sbjct: 152 ESAIQQMN 159
Score = 71 (30.1 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 19 DENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
DE+ R L+ G+L DVT+ L+++ FS+ K++ D N + FV F + +
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRHA 61
Query: 78 IRANKEMN 85
A MN
Sbjct: 62 AAALAAMN 69
Score = 69 (29.3 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + ++D+L+ +TFS + ++ +V +K G+ FV F +
Sbjct: 199 NQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFDSHE 252
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 253 GAAHAIVSVN 262
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 14 KKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+++ D+ F ++ +L TD+ L TF +Y S A V+RD K++ FGFV+F+
Sbjct: 215 RESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFE 273
Query: 73 DPQDFIRANKEMN 85
+P+D RA + +N
Sbjct: 274 NPEDAARAVEALN 286
Score = 101 (40.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L TD+ L TF +Y S A V+RD K++ FGFV+F++P+D RA + +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 150 N 150
N
Sbjct: 286 N 286
Score = 99 (39.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +VTD L F++ + +V RD TN + G+G+V++ + D +A +++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 85 N 85
N
Sbjct: 108 N 108
Score = 97 (39.2 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D L+ +L + VTDE L F+++ + KV+RD + +KG GFV+F + R
Sbjct: 326 DGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRV 384
Query: 146 NKEMN 150
EMN
Sbjct: 385 LNEMN 389
Score = 69 (29.3 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR-ANKE 83
LF +L V ++ L FS + + KV D +++G+GFV F D +D + A ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQF-DTEDSAKNAIEK 193
Query: 84 MN----DDFRLFCG 93
+N +D ++F G
Sbjct: 194 LNGKVLNDKQIFVG 207
Score = 66 (28.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR-ANKE 148
LF +L V ++ L FS + + KV D +++G+GFV F D +D + A ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQF-DTEDSAKNAIEK 193
Query: 149 MN 150
+N
Sbjct: 194 LN 195
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 106 (42.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
+ F G L D T+E L+ F KY + + +++D T +++GFGF++F+D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFED 212
Score = 92 (37.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 73 DPQDFIRANKEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
DP+ I +KE + ++F G + VT+E FS++ + +++ DK T +++GF
Sbjct: 232 DPKRAI--SKEDQEKVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGF 289
Query: 132 GFVSFKDPQ--DFIRANK 147
GFV++ P D + NK
Sbjct: 290 GFVTYDSPAAVDKVCVNK 307
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 110 (43.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 79 RANK-EMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
R N+ E + L+ +L + V DE L FS+Y + +KV+ + + ++GFGFV++
Sbjct: 322 RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYS 380
Query: 138 DPQDFIRANKEMN 150
+P++ +RA EMN
Sbjct: 381 NPEEALRALSEMN 393
Score = 89 (36.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P+ S + + + L+ GDL VT+ L F + + +V RD+ ++ G+
Sbjct: 34 PLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYA 92
Query: 68 FVSFKDPQDFIRANKEMN 85
+++F +P D RA + +N
Sbjct: 93 YINFSNPNDAYRAMEALN 110
Score = 88 (36.0 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KV D T ++KG+GFV F+ + A ++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 197 NGMLMNDKQVFVG 209
Score = 86 (35.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KV D T ++KG+GFV F+ + A ++
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 150 N 150
N
Sbjct: 197 N 197
Score = 73 (30.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ +L ++ ++ L +TF K+ A V+RD+ N ++ FGFV+F+ + A ++M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 85 N 85
N
Sbjct: 290 N 290
Score = 73 (30.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L ++ ++ L +TF K+ A V+RD+ N ++ FGFV+F+ + A ++M
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 150 N 150
N
Sbjct: 290 N 290
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
M+D+ +LF G L D +E L + FSKY + VV+D+ T +++GFGFV+F++P D
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 144 RANKEMN 150
A MN
Sbjct: 61 DAMMAMN 67
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D +E L + FSKY + VV+D+ T +++GFGFV+F++P D A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 84 MN 85
MN
Sbjct: 66 MN 67
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 117 (46.2 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T + + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 90 KDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 149
Query: 142 FIRANKEM 149
A ++M
Sbjct: 150 AENAIQQM 157
Score = 116 (45.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ N F +F GDL ++T + + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 91 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 150
Query: 78 IRANKEM 84
A ++M
Sbjct: 151 ENAIQQM 157
Score = 72 (30.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + +T++L+ +TFS + ++ +V DK G+ FV F +
Sbjct: 197 NQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDK------GYSFVRFNSHE 250
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 251 SAAHAIVSVN 260
Score = 64 (27.6 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+DE L+ G+L DVT+ L+++ F + K++ D N + FV F
Sbjct: 3 DDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP--YCFVEF 54
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 109 (43.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 0.00025, P = 0.00025
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 82 (33.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 75 (31.5 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 150 N 150
N
Sbjct: 252 N 252
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 104 (41.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 10 SSWIKKTCEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK-TKGFG 67
SS + K +D D + LF + DVTDE L FS + A VV+D TNK ++GFG
Sbjct: 12 SSNVSKQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKD--TNKRSRGFG 69
Query: 68 FVSFKDPQD 76
FVSF D
Sbjct: 70 FVSFAVEDD 78
Score = 98 (39.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
R + +DF +F ++ D T+E L FSK+ S A V DK T KG FV+FKD
Sbjct: 281 RKAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKD 340
Score = 55 (24.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 104 LIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
L + F +Y + ++A + R KR K GF FV+ K
Sbjct: 164 LKKIFGRYGTVVEATIPR-KRDGKLCGFAFVTMK 196
Score = 52 (23.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 116 KAKVVRDKR---TNKTKGFGFVSFKDPQDFIRANKEMN 150
+AKV+ + + +++G+GFV F+D ++ + + +N
Sbjct: 537 QAKVIMEVKGSTAGRSRGYGFVEFRDHKNALMGLRWLN 574
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 106 (42.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 94 (38.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + D+ L + FS Y + KV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 90 (36.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 90 (36.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 85 (35.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + L KVV D+ ++ G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + L KVV D+ ++ G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 114 (45.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL +DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAK 118
+F +L + ++ L TFS + + L K
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCK 129
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 112 (44.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NDD 87
N D
Sbjct: 73 NFD 75
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAK 118
+F +L + ++ L TFS + + L K
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCK 129
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
M+D+ +LF G L D T++ L FSKY V R++ TN+++GFGFV+F++P D
Sbjct: 1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
Query: 144 RANKEMN 150
A + MN
Sbjct: 61 DALEGMN 67
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D T++ L FSKY V R++ TN+++GFGFV+F++P D A +
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 84 MN 85
MN
Sbjct: 66 MN 67
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 119 (46.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDP 62
Score = 119 (46.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G L T E L FS+Y + +++DK TN+++GFGFV FKDP
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDP 62
Score = 64 (27.6 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 13/66 (19%), Positives = 33/66 (50%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ + N ++F G + ++ + L F+++ + ++ D + +GFGF++F+
Sbjct: 105 SKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAE 164
Query: 140 QDFIRA 145
Q +A
Sbjct: 165 QSVDQA 170
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
++ ++++ G+L VT E+L FS+ + AKV R T+K+ GFGFV+F +D
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 80 ANKEMND 86
A +N+
Sbjct: 234 AIVALNN 240
Score = 105 (42.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
++ ++++ G+L VT E+L FS+ + AKV R T+K+ GFGFV+F +D
Sbjct: 173 VDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVE 232
Query: 144 RANKEMN 150
A +N
Sbjct: 233 AAIVALN 239
Score = 81 (33.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
R++ G++ VT+E L + ++ + K +V+ DK + +++ FGF + K +D ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 84 MN 85
+N
Sbjct: 137 LN 138
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 110 (43.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF +L ++V DE L FS + + AK++ D++ K+KGFGFV + P++ +A EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 150 NE 151
N+
Sbjct: 425 NQ 426
Score = 110 (43.8 bits), Expect = 0.00049, P = 0.00049
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF +L ++V DE L FS + + AK++ D++ K+KGFGFV + P++ +A EM
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 85 NDDFRLFCG 93
N R+ G
Sbjct: 425 NQ--RMLAG 431
Score = 86 (35.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ G+L VT+ +L F+ +V RD T ++ G+ +V+F + +D +A E+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 85 N 85
N
Sbjct: 142 N 142
Score = 75 (31.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N ++ +L ++T++ F ++ +V+D+ +K +GFGFV++ + + +A
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNYANHECAQKA 317
Query: 81 NKEMND 86
E+ND
Sbjct: 318 VDELND 323
Score = 68 (29.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + L KV D+ N KG+GFV F + A + +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHV 228
Query: 85 N 85
N
Sbjct: 229 N 229
Score = 68 (29.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + L KV D+ N KG+GFV F + A + +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHV 228
Query: 150 N 150
N
Sbjct: 229 N 229
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 110 (43.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 20 ENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E+D +LF G + D +E L FS Y ++A ++RD+ T + +GFGF+ F DP
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
Score = 109 (43.4 bits), Expect = 0.00043, P = 0.00043
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 84 MNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
M D +LF G + D +E L FS Y ++A ++RD+ T + +GFGF+ F DP
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
Score = 82 (33.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
++F G L + +T+E F ++ + V+ D T + +GFGF++F D D +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAV 164
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 100 (40.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + DE L + F+ Y + AKV+ D ++GFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 99 (39.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L + FS + +V RD T ++ G+ +++F+ P D A M
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 95 (38.5 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F ++ + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 91 (37.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ E L F+++ L V+ D+R +++GFGFV+F + D RA EM
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 91 (37.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F ++ + ++ L TFS + + L KVV D+ N +KG+GFV F+ + RA + M
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 91 (37.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ E L F+++ L V+ D+R +++GFGFV+F + D RA EM
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 14 KKTCEDEND--FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
KKT +E+D LF G+L +V D +L F + A+V+ D+ + ++KGFG+V F
Sbjct: 228 KKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDF 287
Query: 72 KDPQDFIRANKEMNDDF 88
P++ +A+ E F
Sbjct: 288 ATPEEAEKAHGEKQGAF 304
Score = 75 (31.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF G+L D ++ + FS+ ++ ++ + + KGFG+V+F +D A +++
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 150 N 150
N
Sbjct: 404 N 404
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 106 (42.4 bits), Expect = 0.00093, P = 0.00093
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 84 MNDDFR--LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
M +D R LF G L + T E L R F ++ + V+++ + +++GFGFV+F DP +
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 142 FIRANKEMNEFPHLFVG 158
N + PH G
Sbjct: 61 ---VNHVLQNGPHTLDG 74
Score = 104 (41.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
EDE +LF G L + T E L R F ++ + V+++ + +++GFGFV+F DP
Sbjct: 3 EDERG-KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADP 58
Score = 89 (36.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
+++F G L ++VT+ L F++Y + ++ D+ K++GFGF+SF++
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE 146
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 131 (51.2 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+E F +F GDL +V DE L FSK+ S +A V+ D +T++++G+GFV+F + D
Sbjct: 169 EEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAE 228
Query: 79 RANKEMNDDFRLFCG 93
A + MN ++ CG
Sbjct: 229 LALQTMNGEW--LCG 241
Score = 124 (48.7 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
F +F GDL +V DE L FSK+ S +A V+ D +T++++G+GFV+F + D A +
Sbjct: 173 FNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQ 232
Query: 148 EMN 150
MN
Sbjct: 233 TMN 235
Score = 43 (20.2 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGF 68
L+ G+L ++E + FS + +K K++ DK NK GF +
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK--NKA-GFNY 122
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 118 (46.6 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G L +D+ DE L FS++ KA+V+ DK T K +GFGFV F D A+K
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDS---ADKA 154
Query: 84 MNDDFRLFCG 93
+ F CG
Sbjct: 155 VVMKFHSICG 164
Score = 111 (44.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G L +D+ DE L FS++ KA+V+ DK T K +GFGFV F D
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDD 147
Score = 72 (30.4 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+LF G L TDE L F +Y VV ++ +++ FGFV++ ++
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEE 59
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 116 (45.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+D +LF G + D TDE L+R FS + L+ V+R+K T + +GFGFV+F DP
Sbjct: 3 SDQGKLFIGGISWD-TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVID 61
Query: 144 RANKEMNEFPHLFVGDLKTRSS 165
R ++ + + V D+K S
Sbjct: 62 RVLQDKHHIDNRDV-DVKRAMS 82
Score = 111 (44.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 24 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
+LF G + D TDE L+R FS + L+ V+R+K T + +GFGFV+F DP
Sbjct: 7 KLFIGGISWD-TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 76 (31.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
++F G L +T + F Y A ++ D+ T + +GFGFVSF D +D +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSV 164
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 113 (44.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 18 EDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
E +D +LF G + D +E L F KY ++A ++RD+ T + +GFGF+ F DP
Sbjct: 9 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADP 66
Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+LF G + D +E L F KY ++A ++RD+ T + +GFGF+ F DP
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADP 66
Score = 74 (31.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
++F G L + +T+ F ++ + V+ D T + +GFGF++F D ++ +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSEESV 176
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 118 (46.6 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
ND LF L V D L + FS++ +V+ DK T + KG+GFV F + ++
Sbjct: 767 NDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKC 826
Query: 81 NKEMNDDFRL 90
KEMN FR+
Sbjct: 827 QKEMNG-FRI 835
Score = 115 (45.5 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K ND LF L V D L + FS++ +V+ DK T + KG+GFV F +
Sbjct: 764 KHTNDT-NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDE 822
Query: 142 FIRANKEMNEF 152
++ KEMN F
Sbjct: 823 ALKCQKEMNGF 833
Score = 77 (32.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
LF L DVTD+ L + F + ++ KV+ D ++K GFV F D +A M
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLD-HNGQSKFAGFVRFSSELDASKAIDAM 257
Query: 85 N 85
N
Sbjct: 258 N 258
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D+ +LF G L + T+E L + FSKY + VV+D+ + +++GFGFV+F++P+D A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 146 NKEMN 150
MN
Sbjct: 64 MMAMN 68
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
+C DE +LF G L + T+E L + FSKY + VV+D+ + +++GFGFV+F++P+
Sbjct: 2 SC-DEG--KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPE 58
Query: 76 DFIRANKEMN 85
D A MN
Sbjct: 59 DAKDAMMAMN 68
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 109 (43.4 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +++F+ P D RA M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 150 N 150
N
Sbjct: 73 N 73
Score = 82 (33.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + ++ L TFS + + L KV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 78 (32.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + + ++ L TFS + + L KV D+ + ++GFGFV F+ + +A M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
Score = 75 (31.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L DV ++ L FS++ L KV+RD + ++ FGFV+F+ ++ +A M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 150 N 150
N
Sbjct: 252 N 252
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E ++R F G L DE L RTFS++ + +K++ D+ + +++GFGFV+FKD +
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 80 ANKEMN 85
A +EMN
Sbjct: 63 AIEEMN 68
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
++R F G L DE L RTFS++ + +K++ D+ + +++GFGFV+FKD + A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 147 KEMN 150
+EMN
Sbjct: 65 EEMN 68
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 101 (40.6 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
FR++ G+L DV L R FS++ + A+VV D+ T +++GFGFV + +
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Score = 83 (34.3 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + +LF G+L DV + L F + + ++V+ ++ T++++GFGFV+ ++
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 78 IRANKEMN 85
+A ++ N
Sbjct: 168 EKAVEKFN 175
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 113 (44.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L D T+E L FS+Y + + AKV RD R +KGFGF+ F+ P+ +A +E
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDAR-GLSKGFGFIYFETPEAAQKACEEA 133
Query: 85 NDDF 88
N+ F
Sbjct: 134 NNTF 137
Score = 108 (43.1 bits), Expect = 0.00024, P = 0.00024
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D T+E L FS+Y + + AKV RD R +KGFGF+ F+ P+ +A +E
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDAR-GLSKGFGFIYFETPEAAQKACEEA 133
Query: 150 NE-FPH 154
N F H
Sbjct: 134 NNTFWH 139
Score = 63 (27.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
L+ G++ + TD L F ++ D+ T +GF FKD + +A
Sbjct: 171 LYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKA 226
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 81 (33.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T E L FS AK++RDK + G+GFV++ +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAISTLN 82
Score = 67 (28.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 77 FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ R + E+ D L+ L +T + + FS++ + ++V+ D+ T ++G F+ F
Sbjct: 95 YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
Score = 63 (27.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 71 F 71
F
Sbjct: 154 F 154
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 81 (33.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T E L FS AK++RDK + G+GFV++ +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAISTLN 82
Score = 67 (28.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 77 FIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 136
+ R + E+ D L+ L +T + + FS++ + ++V+ D+ T ++G F+ F
Sbjct: 95 YARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRF 154
Score = 63 (27.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 71 F 71
F
Sbjct: 154 F 154
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 100 (40.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DV++ +L FS L +V RD + + G+ +V+F+ P D RA M
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 85 N 85
N
Sbjct: 119 N 119
Score = 94 (38.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ ++ D+ D+ L FS + + AKV+ D+ ++KGFGFV F+ P++ A +M
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDM 403
Query: 150 N 150
N
Sbjct: 404 N 404
Score = 89 (36.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F + G + E L FSK+ A V+ D + K KGFGFV+F D +A +++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 85 ND 86
ND
Sbjct: 299 ND 300
Score = 85 (35.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F + G + E L FSK+ A V+ D + K KGFGFV+F D +A +++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 150 NE 151
N+
Sbjct: 299 ND 300
Score = 72 (30.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ + TFS + + L KV D N +KG+GFV F+ A +++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETEHSAQTAIEKV 205
Query: 150 N 150
N
Sbjct: 206 N 206
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ + TFS + + L KV D N +KG+GFV F+ A +++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETEHSAQTAIEKV 205
Query: 85 N 85
N
Sbjct: 206 N 206
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 115 (45.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K+ ++ F +F GDL ++T + + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 109 KDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLD 168
Score = 114 (45.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ N F +F GDL ++T + + F+ + A+VV+D T K+KG+GFVSF + D
Sbjct: 110 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLD 168
Score = 66 (28.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +T+ L+ +TFS + ++ +V +K G+ F+ F +
Sbjct: 216 NQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEK------GYSFIRFSSHE 269
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 270 SAAHAIVSVN 279
Score = 61 (26.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 64
EDE+ + L+ G+L DVT+ L+++ F++ K++ ++ + K
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRK 49
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 102 (41.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 82 (33.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T E L FS AK++RDK + G+GFV++ +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAINTLN 82
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 80 (33.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T + L FS AK++RDK + G+GFV++ + +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAINTLN 82
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 80 (33.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T + L FS AK++RDK + G+GFV++ + +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAINTLN 82
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 106 (42.4 bits), Expect = 0.00074, P = 0.00074
Identities = 28/85 (32%), Positives = 41/85 (48%)
Query: 74 PQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
PQD I + M +LF G L TDE L F K+ + + V++D RT +++GFGF
Sbjct: 20 PQDSITEPEHMR---KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGF 76
Query: 134 VSFKDPQDFIRANKEMNEFPHLFVG 158
+++ A K PH G
Sbjct: 77 ITYSHSSMIDEAQKSR---PHKIDG 98
Score = 99 (39.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E E+ +LF G L TDE L F K+ + + V++D RT +++GFGF+++
Sbjct: 26 EPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMI 85
Query: 78 IRANK 82
A K
Sbjct: 86 DEAQK 90
Score = 87 (35.7 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD--PQDFIRA 145
+LF G L +D DE IR F + + + +V DK T K +GF FV F D P D +
Sbjct: 123 KLFVGALKDD-HDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181
Query: 146 NKE 148
K+
Sbjct: 182 QKQ 184
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 100 (40.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS + +V RD T ++ + +++F+ P D RA M
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 85 N 85
N
Sbjct: 73 N 73
Score = 92 (37.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L + + D+ L + F Y + AKV+ + +KGFGFV F P++ +A EM
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 150 N 150
N
Sbjct: 354 N 354
Score = 90 (36.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 150 N 150
N
Sbjct: 252 N 252
Score = 90 (36.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G D+ D+ L FS + + L KV+ D + +++GFGFV++ + ++ +A EM
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 85 N 85
N
Sbjct: 252 N 252
Score = 87 (35.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 150 NEF----PHLFVGDLKTR 163
N +FVG K+R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
Score = 83 (34.3 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KVV D+ + ++G+GFV F+ + RA + M
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 85 N----DDFRLFCG 93
N +D ++F G
Sbjct: 159 NGMLLNDRKVFVG 171
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 105 (42.0 bits), Expect = 0.00093, P = 0.00093
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
LF G+L VT+++L TFS++ + + KV RD +N +KG+GFVSF D + A
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDD-SNLSKGYGFVSFADFESSDAAIAN 161
Query: 84 MNDDF 88
MN +
Sbjct: 162 MNGQY 166
Score = 103 (41.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKA-KVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
LF G+L VT+++L TFS++ + + KV RD +N +KG+GFVSF D + A
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDD-SNLSKGYGFVSFADFESSDAAIAN 161
Query: 149 MN 150
MN
Sbjct: 162 MN 163
Score = 81 (33.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + + ++ G+L V+D L+ + + + +D+ T +G+GFV F +D
Sbjct: 8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67
Query: 78 IRANKEMNDDFRLF 91
A++ MN RL+
Sbjct: 68 EYASRIMNG-IRLY 80
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 111 (44.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 13 IKKTCEDENDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
I K +D N+ +F G L +V D+ L + F +Y + + A+V+ D ++ ++KG+G+V F
Sbjct: 252 ITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Query: 72 KDPQDF---IRANKEMNDDFRLFCGDLGN 97
+ P+ + AN D R+ DL N
Sbjct: 312 ETPEAAKAAVAANGTKEIDGRMVNLDLSN 340
Score = 107 (42.7 bits), Expect = 0.00086, P = 0.00086
Identities = 19/67 (28%), Positives = 41/67 (61%)
Query: 74 PQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 133
P + +++ N+ +F G L +V D+ L + F +Y + + A+V+ D ++ ++KG+G+
Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308
Query: 134 VSFKDPQ 140
V F+ P+
Sbjct: 309 VDFETPE 315
Score = 73 (30.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F G+L + T++ L F ++ D ++ + KGFG+V+F D D + EM
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDI-DSAKKCVEM 426
Query: 150 NEFPHLFVG 158
N H G
Sbjct: 427 NG--HFIAG 433
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 95 (38.5 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 150 NEF 152
N +
Sbjct: 325 NGY 327
Score = 91 (37.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 79 RANKEMN 85
+A +N
Sbjct: 95 KAINTLN 101
Score = 73 (30.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 173 FDKRIEAEEAIKGLN 187
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 110 (43.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ P + +E + LF L + D LI+TF + + + AKV D+ TN++K F
Sbjct: 359 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 418
Query: 132 GFVSFKDPQDFIRANKEMNEF 152
GFVSF +P A + MN F
Sbjct: 419 GFVSFDNPTSAQTAIQAMNGF 439
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
M GL PGP +D + +LF G + + ++ L F ++ + V++D+ T
Sbjct: 29 MSGLNPGPAVPM-----KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMND 86
KG F+++ ++A +++
Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHE 109
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
D +LF G LG +E + R F + + V+R +KG FV F
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKF 181
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 110 (43.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ P + +E + LF L + D LI+TF + + + AKV D+ TN++K F
Sbjct: 359 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 418
Query: 132 GFVSFKDPQDFIRANKEMNEF 152
GFVSF +P A + MN F
Sbjct: 419 GFVSFDNPTSAQTAIQAMNGF 439
Score = 73 (30.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
M GL PGP +D + +LF G + + ++ L F ++ + V++D+ T
Sbjct: 29 MSGLNPGPAVPM-----KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMND 86
KG F+++ ++A +++
Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHE 109
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
D +LF G LG +E + R F + + V+R +KG FV F
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKF 181
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 108 (43.1 bits), Expect = 0.00027, P = 0.00027
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 78 IRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
I A+K DD ++F G L D + + L S++ L + D T +++GFGFV FK
Sbjct: 20 INASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFK 79
Query: 138 DPQDFIRANKEMNEFPHLFVGDL-KTRSSITLKG 170
D + R E+ E H G L + + +KG
Sbjct: 80 DAESVDRV-LELTE--HKLDGKLIDPKRAKAIKG 110
Score = 97 (39.2 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 8 PISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 67
P S I + E+D ++F G L D + + L S++ L + D T +++GFG
Sbjct: 15 PEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFG 74
Query: 68 FVSFKDPQDFIR 79
FV FKD + R
Sbjct: 75 FVLFKDAESVDR 86
Score = 86 (35.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFG 132
DP+ +A K ++F G L D+T+E L F Y ++ D +TN+ +GF
Sbjct: 101 DPKR-AKAIKGKEPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFC 159
Query: 133 FVSF--KDPQDFIRANK 147
FV+F ++P + N+
Sbjct: 160 FVTFALEEPVQKLLENR 176
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 95 (38.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 150 NEF 152
N +
Sbjct: 367 NGY 369
Score = 92 (37.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 24/76 (31%), Positives = 37/76 (48%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
SS I +++ L L +T E L F K+VRDK T ++ G+GFV
Sbjct: 54 SSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFV 113
Query: 70 SFKDPQDFIRANKEMN 85
++ DP+D +A +N
Sbjct: 114 NYVDPKDAEKAINTLN 129
Score = 75 (31.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIR 200
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 201 FDKRIEAEEAIKGLN 215
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 95 (38.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 150 NEF 152
N +
Sbjct: 338 NGY 340
Score = 91 (37.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 79 RANKEMN 85
+A +N
Sbjct: 95 KAINTLN 101
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 173 FDKRIEAEEAIKGLN 187
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 95 (38.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 150 NEF 152
N +
Sbjct: 339 NGY 341
Score = 91 (37.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 79 RANKEMN 85
+A +N
Sbjct: 95 KAINTLN 101
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 173 FDKRIEAEEAIKGLN 187
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 110 (43.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ P + +E + LF L + D LI+TF + + + AKV D+ TN++K F
Sbjct: 380 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 439
Query: 132 GFVSFKDPQDFIRANKEMNEF 152
GFVSF +P A + MN F
Sbjct: 440 GFVSFDNPTSAQTAIQAMNGF 460
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
M GL PGP +D + +LF G + + ++ L F ++ + V++D+ T
Sbjct: 29 MSGLNPGPAVPM-----KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMND 86
KG F+++ ++A +++
Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHE 109
Score = 54 (24.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
D +LF G LG +E + R F + + V+R +KG FV F
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKF 181
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 110 (43.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ P + +E + LF L + D LI+TF + + + AKV D+ TN++K F
Sbjct: 381 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 440
Query: 132 GFVSFKDPQDFIRANKEMNEF 152
GFVSF +P A + MN F
Sbjct: 441 GFVSFDNPTSAQTAIQAMNGF 461
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
M GL PGP +D + +LF G + + ++ L F ++ + V++D+ T
Sbjct: 29 MSGLNPGPAVPM-----KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMND 86
KG F+++ ++A +++
Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHE 109
Score = 54 (24.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
D +LF G LG +E + R F + + V+R +KG FV F
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKF 181
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 110 (43.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ P + +E + LF L + D LI+TF + + + AKV D+ TN++K F
Sbjct: 381 QQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCF 440
Query: 132 GFVSFKDPQDFIRANKEMNEF 152
GFVSF +P A + MN F
Sbjct: 441 GFVSFDNPTSAQTAIQAMNGF 461
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 1 MLGLRPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT 60
M GL PGP +D + +LF G + + ++ L F ++ + V++D+ T
Sbjct: 29 MSGLNPGPAVPM-----KDHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLT 83
Query: 61 NKTKGFGFVSFKDPQDFIRANKEMND 86
KG F+++ ++A +++
Sbjct: 84 GLHKGCAFLTYCARDSALKAQSALHE 109
Score = 54 (24.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
D +LF G LG +E + R F + + V+R +KG FV F
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSP-DGTSKGCAFVKF 181
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T + L FS AK++RDK + G+GFV++ +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAINTLN 82
Score = 65 (27.9 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L ++T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 94 SYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 71 F 71
F
Sbjct: 154 F 154
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 78 (32.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T + L FS AK++RDK + G+GFV++ +
Sbjct: 13 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 73 DAERAINTLN 82
Score = 64 (27.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 94 SYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 71 F 71
F
Sbjct: 154 F 154
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 95 (38.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 150 NEF 152
N +
Sbjct: 366 NGY 368
Score = 91 (37.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 79 RANKEMN 85
+A +N
Sbjct: 123 KAINTLN 129
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 200
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 201 FDKRIEAEEAIKGLN 215
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 95 (38.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 150 NEF 152
N +
Sbjct: 368 NGY 370
Score = 91 (37.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 79 RANKEMN 85
+A +N
Sbjct: 124 KAINTLN 130
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 201
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 202 FDKRIEAEEAIKGLN 216
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 95 (38.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 150 NEF 152
N +
Sbjct: 367 NGY 369
Score = 91 (37.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+++ L L ++T E L F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 79 RANKEMN 85
+A +N
Sbjct: 124 KAINTLN 130
Score = 73 (30.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 201
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 202 FDKRIEAEEAIKGLN 216
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 105 (42.0 bits), Expect = 0.00085, P = 0.00085
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 314 NG-YRL--GD 320
Score = 103 (41.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 150 NEF 152
N +
Sbjct: 314 NGY 316
Score = 78 (32.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 17 CEDE-NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
C D+ L L ++T + L FS AK++RDK + G+GFV++ +
Sbjct: 21 CRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK 80
Query: 76 DFIRANKEMN 85
D RA +N
Sbjct: 81 DAERAINTLN 90
Score = 63 (27.2 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 102 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 161
Query: 71 F 71
F
Sbjct: 162 F 162
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 97 (39.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Score = 80 (33.2 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 104 KIFVGGIKED-TGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 153
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 95 (38.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD--PQDFIRAN 146
+LF G + D + L F KY +++ D+++ K +GFGFV+F D P D I
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 147 K 147
K
Sbjct: 173 K 173
Score = 89 (36.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E+E +LF G L ++ T+E L + ++ V+R + K++GFGFV+F
Sbjct: 16 ENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTF 69
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 114 (45.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 164
Query: 150 N 150
N
Sbjct: 165 N 165
Score = 114 (45.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
++ + G +V DE L FS++ L KV+RD K+KGFGFVS++ +D +A +EM
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 164
Query: 85 N 85
N
Sbjct: 165 N 165
Score = 48 (22.0 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 54 VVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN----DDFRLFCG 93
VV D+ N +KG+ FV F+ + +A ++MN +D ++F G
Sbjct: 43 VVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG 84
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 103 (41.3 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F + G+D+ DE L + FS+Y KV+RD T K+KGFGFV ++ + +A E+
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 85 ND---DFRLFC 92
+ D ++ C
Sbjct: 260 HGKSIDGKVLC 270
Score = 97 (39.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+++L + F ++ RD T G+G+V+F+ P D A M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 85 NDD 87
N D
Sbjct: 80 NFD 82
Score = 79 (32.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
++ +L + DE L FS + S +AKV+ + + KGFG V F ++ +A EM
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEM 361
Query: 150 N 150
N
Sbjct: 362 N 362
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 100 (40.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 5 RPGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 64
R G SS + E E +LF G L + TD+ L F K+ + V+RD +T +++
Sbjct: 15 RKGRRSSQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSR 74
Query: 65 GFGFVSF 71
GFGFV++
Sbjct: 75 GFGFVTY 81
Score = 83 (34.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 125 KIFVGGIKED-TEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 174
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 95 (38.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 150 NEF 152
N +
Sbjct: 338 NGY 340
Score = 89 (36.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
L ++T E L F K+VRDK T ++ G+GFV++ DP+D +A +N
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 173 FDKRIEAEEAIKGLN 187
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 95 (38.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 150 NEF 152
N +
Sbjct: 338 NGY 340
Score = 89 (36.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
L ++T E L F K+VRDK T ++ G+GFV++ DP+D +A +N
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 101
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 173 FDKRIEAEEAIKGLN 187
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 95 (38.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
GP+ S T D++ L L ++T E F K+VRDK T ++ G+
Sbjct: 24 GPVISTNGAT--DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 81
Query: 67 GFVSFKDPQDFIRANKEMN 85
GFV++ DP D +A +N
Sbjct: 82 GFVNYVDPNDADKAINTLN 100
Score = 89 (36.4 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 150 NEF 152
N +
Sbjct: 338 NGY 340
Score = 60 (26.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/76 (21%), Positives = 37/76 (48%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT-NKTKGFGFV 69
S+ + + D L+ L ++ + + + FS+Y + ++++ D+ T ++G GF+
Sbjct: 112 SYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFI 171
Query: 70 SFKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 172 RFDKRNEAEEAIKGLN 187
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
K E + +LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P
Sbjct: 2 KMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 61
Query: 75 QDFIRANKEMN 85
D A ++MN
Sbjct: 62 ADAKDAARDMN 72
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D A ++
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 149 MN 150
MN
Sbjct: 71 MN 72
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
K E + +LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P
Sbjct: 2 KMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 61
Query: 75 QDFIRANKEMN 85
D A ++MN
Sbjct: 62 ADAKDAARDMN 72
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D A ++
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 149 MN 150
MN
Sbjct: 71 MN 72
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 97 (39.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 4 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 57
Score = 83 (34.3 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 101 KIFVGGIKED-TEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 150
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 96 (38.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
R++ G+L V D L FS+ ++A+V+ D+ + ++KGFGFV++ Q+ A K
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 149 MN 150
++
Sbjct: 265 LD 266
Score = 84 (34.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
D +LF G+L +V L + F + +V+ DK T +++GFGFV+ + A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 82 KEMN 85
++ N
Sbjct: 150 QQFN 153
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 101 (40.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
NK + L+ +L + + D +L F + + AKV+RD++ ++KGFGFV F +
Sbjct: 443 NKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEK-EQSKGFGFVCFASQE 501
Query: 141 DFIRANKEMNEFPHL 155
+ ANK + E HL
Sbjct: 502 E---ANKAVTEM-HL 512
Score = 90 (36.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L F+ +V RD T K+ G+ +V++ + D RA +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 85 N 85
N
Sbjct: 78 N 78
Score = 83 (34.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KV D+ K+K +GFV ++D + A +++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 85 N 85
N
Sbjct: 165 N 165
Score = 83 (34.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KV D+ K+K +GFV ++D + A +++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 150 N 150
N
Sbjct: 165 N 165
Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 2 LGLRPGPISSWIKKTCEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58
LG + + +IKK+ ND + L+ + + VT+ L + F+ Y + + +V K
Sbjct: 169 LGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE-ITSMIV--K 225
Query: 59 RTNKTKGFGFVSFKDPQDFIRANKEMN 85
NK + F F+++ D + A +N
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLN 252
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 101 (40.6 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
NK + L+ +L + + D +L F + + AKV+RD++ ++KGFGFV F +
Sbjct: 443 NKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEK-EQSKGFGFVCFASQE 501
Query: 141 DFIRANKEMNEFPHL 155
+ ANK + E HL
Sbjct: 502 E---ANKAVTEM-HL 512
Score = 90 (36.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L F+ +V RD T K+ G+ +V++ + D RA +
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 85 N 85
N
Sbjct: 78 N 78
Score = 83 (34.3 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +L + ++ L TFS + + L KV D+ K+K +GFV ++D + A +++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 85 N 85
N
Sbjct: 165 N 165
Score = 83 (34.3 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L + ++ L TFS + + L KV D+ K+K +GFV ++D + A +++
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDE-FGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 150 N 150
N
Sbjct: 165 N 165
Score = 63 (27.2 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 2 LGLRPGPISSWIKKTCEDENDFR---LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK 58
LG + + +IKK+ ND + L+ + + VT+ L + F+ Y + + +V K
Sbjct: 169 LGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGE-ITSMIV--K 225
Query: 59 RTNKTKGFGFVSFKDPQDFIRANKEMN 85
NK + F F+++ D + A +N
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLN 252
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 101 (40.6 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ ++ A +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 150 NEF 152
N +
Sbjct: 320 NGY 322
Score = 79 (32.9 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
L +++ + L FS AK++RDK + G+GFV++ +P D RA +N
Sbjct: 41 LPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLN 96
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 97 (39.2 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 16 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 69
Score = 83 (34.3 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 113 KIFVGGIKED-TEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 162
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 97 (39.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 97 (39.2 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Score = 83 (34.3 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 105 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 154
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 96 (38.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
+ + E E +LF G L + TDE L F ++ + V+RD T +++GFGFV++
Sbjct: 1 RDSMEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 58
Score = 76 (31.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 69 VSFKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKT 128
VS +D Q R +N ++F G + D + L F +Y ++V D+ + K
Sbjct: 86 VSIEDSQ---RPGAYLN--MKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKK 140
Query: 129 KGFGFVSFKD 138
+GF FV+F D
Sbjct: 141 RGFAFVTFDD 150
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 87 (35.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFV 69
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV
Sbjct: 8 EPEQRRKLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFV 58
Score = 85 (35.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R + +Y + +VV D+++ K +GF F++F D
Sbjct: 103 KIFVGGIKED-TEEYNLRDYFEYGNIKTIEVVEDRQSGKKRGFAFLTFDD 151
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 105 (42.0 bits), Expect = 0.00082, P = 0.00082
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 306 NG-YRL--GD 312
Score = 103 (41.3 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 150 NEF 152
N +
Sbjct: 306 NGY 308
Score = 74 (31.1 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
L ++T + L FS AK++RDK + G+GFV++ +D RA +N
Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82
Score = 63 (27.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 71 F 71
F
Sbjct: 154 F 154
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 115 (45.5 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/79 (40%), Positives = 41/79 (51%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ ++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D
Sbjct: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146
Query: 74 PQDFIRANKEMNDDFRLFC 92
+ RA E L C
Sbjct: 147 ELEQKRALTECQGAVGLGC 165
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D + RA
Sbjct: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
Query: 146 NKE 148
E
Sbjct: 154 LTE 156
Score = 61 (26.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKD 73
L+ GDL + + + R F+ + + K++R++ T G+ FV F D
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 112 (44.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ ++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D
Sbjct: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146
Query: 74 PQDFIRANKE 83
+ RA E
Sbjct: 147 ELEQKRALTE 156
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D + RA
Sbjct: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
Query: 146 NKE 148
E
Sbjct: 154 LTE 156
Score = 61 (26.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKD 73
L+ GDL + + + R F+ + + K++R++ T G+ FV F D
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 112 (44.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ ++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D
Sbjct: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146
Query: 74 PQDFIRANKE 83
+ RA E
Sbjct: 147 ELEQKRALTE 156
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D + RA
Sbjct: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
Query: 146 NKE 148
E
Sbjct: 154 LTE 156
Score = 61 (26.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKD 73
L+ GDL + + + R F+ + + K++R++ T G+ FV F D
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 112 (44.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ ++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D
Sbjct: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146
Query: 74 PQDFIRANKE 83
+ RA E
Sbjct: 147 ELEQKRALTE 156
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D + RA
Sbjct: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
Query: 146 NKE 148
E
Sbjct: 154 LTE 156
Score = 61 (26.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKD 73
L+ GDL + + + R F+ + + K++R++ T G+ FV F D
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 112 (44.5 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 30/70 (42%), Positives = 39/70 (55%)
Query: 15 KTCEDENDFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
K ++ ++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D
Sbjct: 88 KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTD 146
Query: 74 PQDFIRANKE 83
+ RA E
Sbjct: 147 ELEQKRALTE 156
Score = 110 (43.8 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 29/63 (46%), Positives = 36/63 (57%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSK-YPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
++ LF GDL DV D +L F K YPS KVV D+ T +KG+GFV F D + RA
Sbjct: 95 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRA 153
Query: 146 NKE 148
E
Sbjct: 154 LTE 156
Score = 61 (26.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKD 73
L+ GDL + + + R F+ + + K++R++ T G+ FV F D
Sbjct: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFAD 54
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 132 (51.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++ + D L+ GDL DVTD+ L+ F +YPS A+V+ D T ++G+GFV F
Sbjct: 107 QQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDV 166
Query: 141 DFIRANKEMNEF 152
+ +A +MN F
Sbjct: 167 EKDKALIDMNGF 178
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFS-KYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ ++D L+ GDL DVTD+ L+ F +YPS A+V+ D T ++G+GFV F +
Sbjct: 108 QSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVE 167
Query: 77 FIRANKEMN 85
+A +MN
Sbjct: 168 KDKALIDMN 176
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 99 (39.9 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
LF +L + + E L F + + AKV+ D+ K+KGFGFV F P++ +A EM
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEM 396
Query: 150 N 150
N
Sbjct: 397 N 397
Score = 89 (36.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 19/71 (26%), Positives = 42/71 (59%)
Query: 82 KEMNDDF-RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
+EM +F ++ ++ + ++E + FS + + +D+ K+KGFGFV+F+D +
Sbjct: 226 EEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHE 284
Query: 141 DFIRANKEMNE 151
++A +E+N+
Sbjct: 285 SAVKAVEELND 295
Score = 87 (35.7 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
N ++ ++ + ++E + FS + + +D+ K+KGFGFV+F+D + ++A
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKA 289
Query: 81 NKEMND 86
+E+ND
Sbjct: 290 VEELND 295
Score = 84 (34.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
EN L+ G+L V + L FS +V RD + K+ G+ +V++ +D +
Sbjct: 49 ENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEK 108
Query: 80 ANKEMN 85
A +E+N
Sbjct: 109 AIEELN 114
Score = 64 (27.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 5 RPGPISSWIKK--TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNK 62
RP I W ++ + D +F +L + ++ L TFS + L KV D+ +
Sbjct: 121 RPCRIM-WSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDE-FGQ 178
Query: 63 TKGFGFVSFKDPQDFIRANKEMN----DDFRLFCG 93
+K FGFV ++ + A + +N +D +F G
Sbjct: 179 SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVG 213
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 95 (38.5 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
++F G L T E L FS++ A V+RD +N ++GFGFV++ DP+
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPK 84
Score = 88 (36.0 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 142
MN R+F G L + DE ++R FS++ K++ D+ T + + FGF+ F DP
Sbjct: 133 MNSK-RIFLGGL-KEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSA 190
Query: 143 IRA 145
+A
Sbjct: 191 EKA 193
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + +LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 78 IRANKEMN 85
A ++MN
Sbjct: 63 KDAARDMN 70
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D A ++
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 149 MN 150
MN
Sbjct: 69 MN 70
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + +LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D
Sbjct: 3 EADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADA 62
Query: 78 IRANKEMN 85
A ++MN
Sbjct: 63 KDAARDMN 70
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF G L + ++ L F KY ++ +++D+ TNK++GF FV+F+ P D A ++
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 149 MN 150
MN
Sbjct: 69 MN 70
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 97 (39.2 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 8 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 61
Score = 83 (34.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 105 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 154
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 131 (51.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 22 DFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ +F GDLG +V + +L+ F +++PS AK++ D T +++G+GFV F D D RA
Sbjct: 139 EYSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRA 198
Query: 81 NKEMNDDFRLFCGD 94
EM ++CG+
Sbjct: 199 LVEMQG---VYCGN 209
Score = 128 (50.1 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTF-SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E ++ +F GDLG +V + +L+ F +++PS AK++ D T +++G+GFV F D D
Sbjct: 135 ERGPEYSIFVGDLGPEVNEFVLVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESD 194
Query: 142 FIRANKEM 149
RA EM
Sbjct: 195 QQRALVEM 202
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 93 (37.8 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD--PQDFIRAN 146
+LF G L +D +E L F + + +V DK T K +GF F+ F D P D I
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 147 K 147
K
Sbjct: 176 K 176
Score = 89 (36.4 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L TD+ L F K+ + + V++D +T +++GFGF+++
Sbjct: 19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 105 (42.0 bits), Expect = 0.00094, P = 0.00094
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 85 NDDFRLFCGD 94
N +RL GD
Sbjct: 333 NG-YRL--GD 339
Score = 103 (41.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +LG D + +L + F + + KV+RD TNK KGFGFV+ + ++ A +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 150 NEF 152
N +
Sbjct: 333 NGY 335
Score = 74 (31.1 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 30 LGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 85
L ++T + L FS AK++RDK + G+GFV++ +D RA +N
Sbjct: 54 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 109
Score = 63 (27.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + E D L+ L +T + + FS++ + ++V+ D+ T ++G F+
Sbjct: 121 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 180
Query: 71 F 71
F
Sbjct: 181 F 181
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 91 (37.1 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
D++ L L ++T E F K+VRDK T ++ G+GFV++ DP+D
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 79 RANKEMN 85
+A +N
Sbjct: 100 KAINTLN 106
Score = 90 (36.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 150 NEF 152
N +
Sbjct: 330 NGY 332
Score = 74 (31.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 118 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 177
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 178 FDKRIEAEEAIKGLN 192
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 97 (39.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 97 (39.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 97 (39.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 97 (39.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 97 (39.2 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
E E +LF G L + TD+ L F K+ + V+RD +T +++GFGFV++
Sbjct: 30 EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
Score = 83 (34.3 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 89 RLFCGDLGNDVTDELLIRT-FSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
++F G + D T+E +R F KY +V+ D+++ K +GF FV+F D
Sbjct: 127 KIFVGGIKED-TEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 95 (38.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+F +L D + +L + F + + KV+RD TNK KGFGFV+ + + A +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 150 NEF 152
N +
Sbjct: 368 NGY 370
Score = 86 (35.3 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 10 SSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTN-KTKGFGF 68
SS ++ +++ L L ++T E L F K+VRDK T ++ G+GF
Sbjct: 53 SSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGF 112
Query: 69 VSFKDPQDFIRANKEMN 85
V++ DP+D +A +N
Sbjct: 113 VNYIDPKDAEKAINTLN 129
Score = 74 (31.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 11 SWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVS 70
S+ + + D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 200
Query: 71 FKDPQDFIRANKEMN 85
F + A K +N
Sbjct: 201 FDKRIEAEEAIKGLN 215
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MNDDFRL 90
MN R+
Sbjct: 67 MNGKVRI 73
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 145 ANKEMN 150
A MN
Sbjct: 63 AMMAMN 68
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
WARNING: HSPs involving 449 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.141 0.426 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 170 170 0.00086 108 3 11 22 0.37 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 699
No. of states in DFA: 564 (60 KB)
Total size of DFA: 138 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.45u 0.09s 15.54t Elapsed: 00:00:07
Total cpu time: 15.49u 0.10s 15.59t Elapsed: 00:00:07
Start: Thu Aug 15 16:06:37 2013 End: Thu Aug 15 16:06:44 2013
WARNINGS ISSUED: 2