RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7847
(170 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 67.7 bits (164), Expect = 3e-15
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 26/159 (16%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E E +LF G L + TDE L F ++ + V+RD T +++GFGFV++ ++
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 78 IRANKEMN--------------------------DDFRLFCGDLGNDVTDELLIRTFSKY 111
A ++F G + D + L F +Y
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 121
Query: 112 PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMN 150
+++ D+ + K +GF FV+F D + +
Sbjct: 122 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 160
Score = 47.3 bits (111), Expect = 8e-08
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
KE +LF G L + TDE L F ++ + V+RD T +++GFGFV++ ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 142 FIRANKEMNEFPHLFVGDLK 161
A V + K
Sbjct: 61 VDAAMNARPHKVDGRVVEPK 80
Score = 42.3 bits (98), Expect = 6e-06
Identities = 14/77 (18%), Positives = 30/77 (38%)
Query: 12 WIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSF 71
++ ++F G + D + L F +Y +++ D+ + K +GF FV+F
Sbjct: 87 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 146
Query: 72 KDPQDFIRANKEMNDDF 88
D + +
Sbjct: 147 DDHDSVDKIVIQKYHTV 163
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 52.6 bits (126), Expect = 2e-10
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSFKDPQD 76
+ + ++ ++ + FS + ++ + T +GFGFV F QD
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 77 FIRANKEMNDDFRL 90
+A + L
Sbjct: 64 AKKAFNALCHSTHL 77
Score = 50.7 bits (121), Expect = 1e-09
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR-TNKTKGFGFVSFKDPQDFIRANK 147
++ ++ + FS + ++ + T +GFGFV F QD +A
Sbjct: 10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 69
Query: 148 EMNEFPHL 155
+ HL
Sbjct: 70 ALCHSTHL 77
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 50.7 bits (121), Expect = 8e-10
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 85 N 85
N
Sbjct: 63 N 63
Score = 50.7 bits (121), Expect = 8e-10
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ GDL DVT+ +L FS L +V RD T ++ G+ +V+F+ P D RA M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 150 N 150
N
Sbjct: 63 N 63
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.0 bits (119), Expect = 2e-09
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
+ + L L T++ L FS + L +V +D +T +KGFGFV F + +
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 142 FIRANKEMNEF 152
++ + +
Sbjct: 63 QVKVMSQRHMI 73
Score = 48.4 bits (115), Expect = 7e-09
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
+ L L T++ L FS + L +V +D +T +KGFGFV F + + ++
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 80 ANKEMN 85
+ +
Sbjct: 66 VMSQRH 71
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 49.6 bits (118), Expect = 2e-09
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E E +LF G L + TDE L F ++ + V+RD T +++GFGFV++ ++
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 78 IRANKEMN 85
A
Sbjct: 62 DAAMNARP 69
Score = 48.5 bits (115), Expect = 6e-09
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
KE +LF G L + TDE L F ++ + V+RD T +++GFGFV++ ++
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 142 FIRANKEMN 150
A
Sbjct: 61 VDAAMNARP 69
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 49.6 bits (118), Expect = 2e-09
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+LF G L N + D+ + + + +V+D T +KG+ F + D +A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 84 MN 85
+N
Sbjct: 63 LN 64
Score = 49.6 bits (118), Expect = 2e-09
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+LF G L N + D+ + + + +V+D T +KG+ F + D +A
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 149 MN 150
+N
Sbjct: 63 LN 64
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 49.6 bits (118), Expect = 3e-09
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E D L+ +L +TD+ L F KY S ++ ++RDK T + +G FV + ++
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 78 IRANKEMN 85
A +N
Sbjct: 62 QEAISALN 69
Score = 48.4 bits (115), Expect = 7e-09
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D L+ +L +TD+ L F KY S ++ ++RDK T + +G FV + ++ A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 146 NKEMN 150
+N
Sbjct: 65 ISALN 69
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.4 bits (115), Expect = 5e-09
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G L D +E + F + ++ D +TNK +GF F++FK+ + + ++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 84 MNDDF 88
+
Sbjct: 61 KYHNV 65
Score = 48.4 bits (115), Expect = 6e-09
Identities = 15/62 (24%), Positives = 31/62 (50%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L D +E + F + ++ D +TNK +GF F++FK+ + + ++
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 149 MN 150
Sbjct: 61 KY 62
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 49.3 bits (117), Expect = 5e-09
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 79 RANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 138
R +E +LF G L + T+E L + ++ V+RD + +++GFGFV+F
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
Query: 139 PQDFIRANKEMN 150
+ A
Sbjct: 72 MAEVDAAMAARP 83
Score = 48.9 bits (116), Expect = 6e-09
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E E +LF G L + T+E L + ++ V+RD + +++GFGFV+F +
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 78 IRANKEMNDDF 88
A
Sbjct: 76 DAAMAARPHSI 86
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 47.3 bits (112), Expect = 1e-08
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G L T E L F ++ + V+RD T +++GFGFV+F D + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 84 MNDDF 88
+
Sbjct: 62 SRHEL 66
Score = 46.9 bits (111), Expect = 2e-08
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L T E L F ++ + V+RD T +++GFGFV+F D + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 149 MN 150
Sbjct: 62 SR 63
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.3 bits (112), Expect = 1e-08
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G L D T + L FSK+ + + D T +++GFGFV FK+ + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 84 MNDDF 88
Sbjct: 61 KEHKL 65
Score = 46.9 bits (111), Expect = 2e-08
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L D T + L FSK+ + + D T +++GFGFV FK+ + + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 149 MN 150
Sbjct: 61 KE 62
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 47.6 bits (113), Expect = 2e-08
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
+KK+C L+ G+L T+E + FSK K + DK GF FV +
Sbjct: 4 LKKSC------TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 57
Query: 73 DPQDFIRANKEMN 85
D A + +N
Sbjct: 58 SRADAENAMRYIN 70
Score = 47.6 bits (113), Expect = 2e-08
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L+ G+L T+E + FSK K + DK GF FV + D A +
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 149 MN 150
+N
Sbjct: 69 IN 70
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 46.6 bits (110), Expect = 3e-08
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+ F + A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 146 NKEMN 150
K +N
Sbjct: 65 IKGLN 69
Score = 46.6 bits (110), Expect = 3e-08
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
D L+ L +T + L + FS+Y + ++++ D+ T ++G GF+ F + A
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 82 KEMN 85
K +N
Sbjct: 66 KGLN 69
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 47.0 bits (111), Expect = 3e-08
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+D ++F G L TD L + F + +A V+ D++T K++G+GFV+ D
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 78 IRANKEMNDDF 88
RA K+ N
Sbjct: 66 ERACKDPNPII 76
Score = 43.2 bits (101), Expect = 9e-07
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L TD L + F + +A V+ D++T K++G+GFV+ D RA K+
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 149 MN 150
N
Sbjct: 72 PN 73
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.6 bits (110), Expect = 5e-08
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 8 PISSWIKKTCEDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
P+ + +E D R +FC L + L FS +++ D+ + ++KG
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 67 GFVSFKDPQDFIRANKEMNDDFRLFCG 93
+V F + Q + + G
Sbjct: 63 AYVEFCEIQS---VPLAIGLTGQRLLG 86
Score = 45.0 bits (106), Expect = 2e-07
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ E D +FC L + L FS +++ D+ + ++KG +V F +
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 70
Query: 140 QDFIRANKEMNEFPHLFVG 158
Q + +G
Sbjct: 71 QS---VPLAIGLTGQRLLG 86
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 45.8 bits (108), Expect = 8e-08
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 7 GPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 66
GPIS E D ++ G L V++ LL F + + + +D+ T + +G+
Sbjct: 1 GPIS-------ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY 53
Query: 67 GFVSFKDPQDFIRANKEMN 85
GFV F +D A K M+
Sbjct: 54 GFVEFLSEEDADYAIKIMD 72
Score = 45.4 bits (107), Expect = 1e-07
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
E N D ++ G L V++ LL F + + + +D+ T + +G+GFV F +D
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 142 FIRANKEMN 150
A K M+
Sbjct: 64 ADYAIKIMD 72
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.1 bits (106), Expect = 1e-07
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
D+ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 146 NKEMN 150
MN
Sbjct: 64 MMAMN 68
Score = 42.8 bits (100), Expect = 1e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ +LF G L D ++ L + FSKY + VV+D+ T +++GFGFV+F++ D A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 81 NKEMN 85
MN
Sbjct: 64 MMAMN 68
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 45.0 bits (106), Expect = 1e-07
Identities = 8/67 (11%), Positives = 23/67 (34%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ ++ V+ + ++ F Y + ++ G V+F+ +
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 79 RANKEMN 85
A ++N
Sbjct: 66 AAVIDLN 72
Score = 44.7 bits (105), Expect = 2e-07
Identities = 8/63 (12%), Positives = 23/63 (36%)
Query: 88 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
+ ++ V+ + ++ F Y + ++ G V+F+ + A
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 148 EMN 150
++N
Sbjct: 70 DLN 72
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 44.2 bits (104), Expect = 2e-07
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L +L V+D + F+++ + KA V D R+ ++ G V F+ D ++A K+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQ 60
Query: 84 MN 85
N
Sbjct: 61 YN 62
Score = 44.2 bits (104), Expect = 2e-07
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+L +L V+D + F+++ + KA V D R+ ++ G V F+ D ++A K+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQ 60
Query: 149 MN 150
N
Sbjct: 61 YN 62
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 44.2 bits (104), Expect = 4e-07
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 20 ENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 79
E + L+ +L +T E + F KY + +R T +T+G +V ++D D
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPI---RQIRVGNTPETRGTAYVVYEDIFDAKN 61
Query: 80 ANKEMN 85
A ++
Sbjct: 62 ACDHLS 67
Score = 43.9 bits (103), Expect = 6e-07
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ +L +T E + F KY + +R T +T+G +V ++D D A +
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPI---RQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 66
Query: 150 NEF 152
+ F
Sbjct: 67 SGF 69
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.9 bits (103), Expect = 4e-07
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ +D+ + +L D + L F + S + + +DK T ++KGF F+SF +
Sbjct: 2 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 61
Query: 141 DFIRANKEMN 150
D RA ++
Sbjct: 62 DAARAIAGVS 71
Score = 40.4 bits (94), Expect = 7e-06
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+++ + +L D + L F + S + + +DK T ++KGF F+SF +D
Sbjct: 4 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 63
Query: 78 IRANKEMN 85
RA ++
Sbjct: 64 ARAIAGVS 71
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 42.8 bits (100), Expect = 9e-07
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+L+ G+L VT + L + F K+ + G+ FV + D IRA +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDR------KLPLAGQVLLKSGYAFVDYPDQNWAIRAIET 56
Query: 84 MNDDFRL 90
++ L
Sbjct: 57 LSGKVEL 63
Score = 42.4 bits (99), Expect = 1e-06
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
MN +L+ G+L VT + L + F K+ + G+ FV + D I
Sbjct: 1 MN---KLYIGNLSPAVTADDLRQLFGDR------KLPLAGQVLLKSGYAFVDYPDQNWAI 51
Query: 144 RANKEMNEFPHL 155
RA + ++ L
Sbjct: 52 RAIETLSGKVEL 63
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 42.7 bits (100), Expect = 1e-06
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
ND R++ G+L D+ + + F KY + + + K F FV F+DP+D
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAI---RDIDLKNRRGGPPFAFVEFEDPRDA 66
Query: 78 IRANKEMN 85
A +
Sbjct: 67 EDAVYGRD 74
Score = 42.7 bits (100), Expect = 1e-06
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
N+D R++ G+L D+ + + F KY + + + K F FV F+DP+D
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAI---RDIDLKNRRGGPPFAFVEFEDPRDAED 68
Query: 145 ANKEMN 150
A +
Sbjct: 69 AVYGRD 74
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 42.8 bits (100), Expect = 1e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKA--KVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
RLF G + E ++ +K + K +GF FV ++ + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 82 KEMNDDFRLFCG 93
+++ G
Sbjct: 63 RKLMPGRIQLWG 74
Score = 41.6 bits (97), Expect = 3e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKA--KVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
RLF G + E ++ +K + K +GF FV ++ + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 147 KEMNEFPHLFVG 158
+++ G
Sbjct: 63 RKLMPGRIQLWG 74
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 41.9 bits (98), Expect = 2e-06
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
N+ + ++CG + + +TD+L+ +TFS + ++ +V +K + FV F +
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHE 65
Query: 141 DFIRANKEMN 150
A +N
Sbjct: 66 SAAHAIVSVN 75
Score = 41.1 bits (96), Expect = 4e-06
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ ++CG + + +TD+L+ +TFS + ++ +V +K + FV F +
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAA 68
Query: 79 RANKEMN 85
A +N
Sbjct: 69 HAIVSVN 75
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 41.5 bits (97), Expect = 2e-06
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
++ L L D+TD L F +++RD +T + G+ FV F D RA
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 81 NKEMN 85
K +N
Sbjct: 61 IKVLN 65
Score = 40.4 bits (94), Expect = 6e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
+ L L D+TD L F +++RD +T + G+ FV F D RA
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 147 KEMN 150
K +N
Sbjct: 62 KVLN 65
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 41.2 bits (96), Expect = 3e-06
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G + D + L F +Y +++ D+ + K +GF FV+F D + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 84 MNDDF 88
Sbjct: 64 KYHTV 68
Score = 40.9 bits (95), Expect = 4e-06
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G + D + L F +Y +++ D+ + K +GF FV+F D + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 149 MN 150
Sbjct: 64 KY 65
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 41.6 bits (97), Expect = 3e-06
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRAN 81
LF +L T+E L FSK + + + K + GFGFV +K P+ +A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 82 KEMN 85
K++
Sbjct: 61 KQLQ 64
Score = 41.6 bits (97), Expect = 3e-06
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKR---TNKTKGFGFVSFKDPQDFIRAN 146
LF +L T+E L FSK + + + K + GFGFV +K P+ +A
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 147 KEMN 150
K++
Sbjct: 61 KQLQ 64
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 42.0 bits (98), Expect = 3e-06
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 78 IRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 137
I + G LGN V+ L+ K K + F ++
Sbjct: 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLV------DALLMPPNKPYSFARYR 64
Query: 138 DPQDFIRANKEMN 150
++ RA +N
Sbjct: 65 TTEESKRAYVTLN 77
Score = 42.0 bits (98), Expect = 3e-06
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 13 IKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFK 72
I+ + G LGN V+ L+ K K + F ++
Sbjct: 11 IETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLV------DALLMPPNKPYSFARYR 64
Query: 73 DPQDFIRANKEMNDDFRLFCGDLGNDVT 100
++ RA +N + DLG +T
Sbjct: 65 TTEESKRAYVTLNG--KEVVDDLGQKIT 90
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.3 bits (96), Expect = 3e-06
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKV-----VRDKRTNKTKGFGFVSFKDPQDFI 78
RL+ G++ +T+E ++ F+ V + N+ K F F+ F+ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 79 RA 80
+A
Sbjct: 63 QA 64
Score = 41.3 bits (96), Expect = 3e-06
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKV-----VRDKRTNKTKGFGFVSFKDPQDFI 143
RL+ G++ +T+E ++ F+ V + N+ K F F+ F+ +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 144 RA 145
+A
Sbjct: 63 QA 64
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 40.5 bits (94), Expect = 5e-06
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L L T+ L FSKY +V D+++ +++GF FV F++ D A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 84 MN 85
N
Sbjct: 71 AN 72
Score = 40.5 bits (94), Expect = 5e-06
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L L T+ L FSKY +V D+++ +++GF FV F++ D A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 149 MN 150
N
Sbjct: 71 AN 72
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 41.0 bits (96), Expect = 5e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 18 EDENDFRLFCGDLGNDVTDE-LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
+ R+F G+L V + + FSKY + V KGF FV + + ++
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERN 62
Query: 77 FIRANKEMN 85
A +
Sbjct: 63 ARAAVAGED 71
Score = 40.2 bits (94), Expect = 1e-05
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 85 NDDFRLFCGDLGNDVTDE-LLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+ + R+F G+L V + + FSKY + V KGF FV + + ++
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNAR 64
Query: 144 RANKEMN 150
A +
Sbjct: 65 AAVAGED 71
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 40.8 bits (95), Expect = 7e-06
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
R+ +L VT ++L + FSK+ + LK + + + DP A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKLS 64
Query: 149 MNEFPHLFVGDLKTR 163
++ ++ R
Sbjct: 65 LDGQN-IYNACCTLR 78
Score = 40.8 bits (95), Expect = 7e-06
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
R+ +L VT ++L + FSK+ + LK + + + DP A
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKLS 64
Query: 84 MN 85
++
Sbjct: 65 LD 66
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 40.4 bits (94), Expect = 7e-06
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 71 FKDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 130
+DP +K++ L +L ++T++ L F + K+KG
Sbjct: 4 LEDPCT----SKKVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKG 54
Query: 131 FGFVSFKDPQDFIRANKEMN 150
++ FK D + +E
Sbjct: 55 IAYIEFKSEADAEKNLEEKQ 74
Score = 37.7 bits (87), Expect = 9e-05
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ L +L ++T++ L F + K+KG ++ FK D
Sbjct: 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEI-----RLVSQDGKSKGIAYIEFKSEADA 66
Query: 78 IRANKEMN 85
+ +E
Sbjct: 67 EKNLEEKQ 74
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 40.2 bits (93), Expect = 9e-06
Identities = 14/82 (17%), Positives = 27/82 (32%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
++ + +F +L D +E L ++ +VV T +KG F F +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 142 FIRANKEMNEFPHLFVGDLKTR 163
+ + L R
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGR 84
Score = 38.3 bits (88), Expect = 5e-05
Identities = 13/80 (16%), Positives = 25/80 (31%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+ +F +L D +E L ++ +VV T +KG F F +
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 78 IRANKEMNDDFRLFCGDLGN 97
+ + + L
Sbjct: 64 QKCLAAASLEAEGGGLKLDG 83
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.7 bits (92), Expect = 1e-05
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 25 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+F G+L ++ ++LL TFS + K++RD T +KG+ F++F A +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 84 MN 85
MN
Sbjct: 61 MN 62
Score = 39.7 bits (92), Expect = 1e-05
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 90 LFCGDLGNDVTDELLIRTFSKY-PSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F G+L ++ ++LL TFS + K++RD T +KG+ F++F A +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 149 MN 150
MN
Sbjct: 61 MN 62
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.0 bits (93), Expect = 1e-05
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F G D+T++ L FS+Y V+ + F FV+F D Q E
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQY-----GDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE 61
Query: 149 MNEF 152
Sbjct: 62 DLII 65
Score = 37.7 bits (87), Expect = 7e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+F G D+T++ L FS+Y V+ + F FV+F D Q E
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQY-----GDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE 61
Query: 84 MND 86
Sbjct: 62 DLI 64
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 40.0 bits (93), Expect = 1e-05
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 18 EDENDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 76
ED+ R L+ G+L DVT+ L+++ FS+ K++ + + FV F + +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRD 60
Query: 77 FIRANKEMN 85
A MN
Sbjct: 61 AAAALAAMN 69
Score = 38.5 bits (89), Expect = 4e-05
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
L+ G+L DVT+ L+++ FS+ K++ + + FV F + +D
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAA 63
Query: 145 ANKEMN 150
A MN
Sbjct: 64 ALAAMN 69
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 39.3 bits (91), Expect = 2e-05
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
RLF +L ++E L + FS Y + D T K KGF FV+F P+ ++A E
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 84 MN 85
++
Sbjct: 70 VD 71
Score = 39.3 bits (91), Expect = 2e-05
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RLF +L ++E L + FS Y + D T K KGF FV+F P+ ++A E
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 149 MN 150
++
Sbjct: 70 VD 71
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 38.9 bits (90), Expect = 3e-05
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L+ G L +V D++L F + ++ D T K +GF FV F+ +D A
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 84 MN 85
MN
Sbjct: 67 MN 68
Score = 38.9 bits (90), Expect = 3e-05
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L+ G L +V D++L F + ++ D T K +GF FV F+ +D A
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 149 MN 150
MN
Sbjct: 67 MN 68
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 38.5 bits (89), Expect = 3e-05
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L L ++T E F K+VRDK T ++ G+GFV++ DP+D +A
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 84 MN 85
+N
Sbjct: 64 LN 65
Score = 38.5 bits (89), Expect = 3e-05
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L L ++T E F K+VRDK T ++ G+GFV++ DP+D +A
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63
Query: 149 MN 150
+N
Sbjct: 64 LN 65
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.2 bits (88), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
++F G L + T E + F ++ A ++ DK TN+ +GFGFV+F+ + E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CE 59
Query: 84 MND 86
++
Sbjct: 60 IHF 62
Score = 38.2 bits (88), Expect = 3e-05
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
++F G L + T E + F ++ A ++ DK TN+ +GFGFV+F+ + E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CE 59
Query: 149 MN 150
++
Sbjct: 60 IH 61
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 38.4 bits (89), Expect = 5e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 16 TCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 75
D D L ++ D+ E SK+ K + G VSF+DP+
Sbjct: 18 HPMDFEDDPLVLNEIREDLRVE-----CSKFGQIRKLLLFDRHP----DGVASVSFRDPE 68
Query: 76 DFIRANKEMN 85
+ + ++
Sbjct: 69 EADYCIQTLD 78
Score = 36.8 bits (85), Expect = 2e-04
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+D L ++ D+ E SK+ K + G VSF+DP++
Sbjct: 23 EDDPLVLNEIREDLRVE-----CSKFGQIRKLLLFDRHP----DGVASVSFRDPEEADYC 73
Query: 146 NKEMN 150
+ ++
Sbjct: 74 IQTLD 78
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 38.1 bits (88), Expect = 5e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
+ KE + LF L + D+ L++ F + + + AKV DK+TN +K FGFVS+ +P
Sbjct: 11 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 70
Query: 140 QDFIRANKEMN 150
A + MN
Sbjct: 71 VSAQAAIQSMN 81
Score = 37.8 bits (87), Expect = 8e-05
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E LF L + D+ L++ F + + + AKV DK+TN +K FGFVS+ +P
Sbjct: 14 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 78 IRANKEMN 85
A + MN
Sbjct: 74 QAAIQSMN 81
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 38.2 bits (88), Expect = 5e-05
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKY--------PSFLKAKVVRDKRTNKTKGFGFV 69
ED ++ ++ L + VT + L F + + DK T K KG V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 70 SFKDPQDFIRANKEMN 85
S++DP A + +
Sbjct: 64 SYEDPPTAKAAVEWFD 79
Score = 37.1 bits (85), Expect = 1e-04
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 83 EMNDDFRLFCGDLGNDVTDELLIRTFSKY--------PSFLKAKVVRDKRTNKTKGFGFV 134
E +D+ ++ L + VT + L F + + DK T K KG V
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 135 SFKDPQDFIRANKEMN 150
S++DP A + +
Sbjct: 64 SYEDPPTAKAAVEWFD 79
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 37.3 bits (86), Expect = 9e-05
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 147
++ +L + + L ++ S F + + R+ K +G FV FK+ A +
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 148 EMNEFP----HLFVGDLKTRSSITLK 169
M FP + + KT S I K
Sbjct: 65 SMQGFPFYDKPMRIQYAKTDSDIIAK 90
Score = 35.8 bits (82), Expect = 4e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPS-FLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
++ +L + + L ++ S F + + R+ K +G FV FK+ A +
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
Query: 83 EMN 85
M
Sbjct: 65 SMQ 67
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 37.3 bits (86), Expect = 9e-05
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K RLF G+L D+T+E + + F KY + +K KGFGF+ +
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTL 56
Query: 142 FIRANKEMN 150
A E++
Sbjct: 57 AEIAKVELD 65
Score = 36.1 bits (83), Expect = 2e-04
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
RLF G+L D+T+E + + F KY + +K KGFGF+ + A E
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKVE 63
Query: 84 MN 85
++
Sbjct: 64 LD 65
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 37.3 bits (86), Expect = 9e-05
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
M+ L+ +L ++E++ + F+ +R K + + FV F + +D
Sbjct: 3 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIK------PGAVERVKKIRDYAFVHFSNRED 56
Query: 142 FIRANKEMN 150
+ A K +N
Sbjct: 57 AVEAMKALN 65
Score = 36.5 bits (84), Expect = 2e-04
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L+ +L ++E++ + F+ +R K + + FV F + +D + A K
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIK------PGAVERVKKIRDYAFVHFSNREDAVEAMKA 63
Query: 84 MN 85
+N
Sbjct: 64 LN 65
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 37.3 bits (86), Expect = 1e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+F +L + ++ L TFS + + L KVV D+ +K +GFV F+ + RA ++
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEK 67
Query: 84 MN 85
MN
Sbjct: 68 MN 69
Score = 37.3 bits (86), Expect = 1e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F +L + ++ L TFS + + L KVV D+ +K +GFV F+ + RA ++
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEK 67
Query: 149 MN 150
MN
Sbjct: 68 MN 69
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 36.7 bits (84), Expect = 1e-04
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
L+ L TD+ L++ Y + K + DK TNK KG+GFV F P +A +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 85 N 85
Sbjct: 61 K 61
Score = 36.7 bits (84), Expect = 1e-04
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
L+ L TD+ L++ Y + K + DK TNK KG+GFV F P +A +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 150 N 150
Sbjct: 61 K 61
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 37.1 bits (85), Expect = 1e-04
Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L +DV E R F + K+ ++F +P A
Sbjct: 7 GLIACVANDDVFSESETR-AKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 149 MNEFPH 154
+++
Sbjct: 66 LHKTEF 71
Score = 36.3 bits (83), Expect = 3e-04
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L +DV E R F + K+ ++F +P A
Sbjct: 7 GLIACVANDDVFSESETR-AKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 84 MN 85
++
Sbjct: 66 LH 67
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 36.7 bits (84), Expect = 2e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 24 RLFCGDLGNDVTDELLIRTF---SKYPSFLKAKVVRDKRTNKT---KGFGFVSFKDPQDF 77
+F L + D +++ K+ K + + +V++ +D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 78 IRANKEMN 85
+RA + +N
Sbjct: 70 LRAIQCVN 77
Score = 36.7 bits (84), Expect = 2e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 89 RLFCGDLGNDVTDELLIRTF---SKYPSFLKAKVVRDKRTNKT---KGFGFVSFKDPQDF 142
+F L + D +++ K+ K + + +V++ +D
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 143 IRANKEMN 150
+RA + +N
Sbjct: 70 LRAIQCVN 77
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 36.6 bits (84), Expect = 2e-04
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
RL ++ D L + F ++ L +++ ++R +K FGFV+F++ D
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSADA 64
Query: 78 IRANKEMN 85
RA ++++
Sbjct: 65 DRAREKLH 72
Score = 36.6 bits (84), Expect = 2e-04
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 81 NKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQ 140
++ + RL ++ D L + F ++ L +++ ++R +K FGFV+F++
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSA 62
Query: 141 DFIRANKEMN 150
D RA ++++
Sbjct: 63 DADRAREKLH 72
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.9 bits (85), Expect = 2e-04
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 71 FKDPQDFIRANKEMNDDFR-LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTK 129
+++PQ+ ++ + + + ++ +E+ KY + V + +
Sbjct: 10 YRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-LGDHLV 68
Query: 130 GFGFVSFKDPQDFIRANKEMN 150
G +V F+ +D +A ++N
Sbjct: 69 GNVYVKFRREEDAEKAVIDLN 89
Score = 36.9 bits (85), Expect = 2e-04
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 6 PGPISSWIKKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKG 65
P +S + + ++ +E+ KY + V + + G
Sbjct: 11 RNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-LGDHLVG 69
Query: 66 FGFVSFKDPQDFIRANKEMN 85
+V F+ +D +A ++N
Sbjct: 70 NVYVKFRREEDAEKAVIDLN 89
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 36.2 bits (83), Expect = 2e-04
Identities = 12/65 (18%), Positives = 29/65 (44%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
+ + LF + + ++ + F Y + D+RT +KG+ V ++ + + A
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 146 NKEMN 150
+ +N
Sbjct: 66 KEALN 70
Score = 35.9 bits (82), Expect = 3e-04
Identities = 12/63 (19%), Positives = 28/63 (44%)
Query: 23 FRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANK 82
+ LF + + ++ + F Y + D+RT +KG+ V ++ + + A +
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 83 EMN 85
+N
Sbjct: 68 ALN 70
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.3 bits (83), Expect = 3e-04
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
D + +F G++ + T+E L FS+ + ++V D+ T K KG+GF ++D +
Sbjct: 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63
Query: 78 IRANKEMN 85
+ A + +N
Sbjct: 64 LSAMRNLN 71
Score = 35.1 bits (80), Expect = 7e-04
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+F G++ + T+E L FS+ + ++V D+ T K KG+GF ++D + + A +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 149 MN 150
+N
Sbjct: 70 LN 71
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.5 bits (81), Expect = 6e-04
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 78
+ F G+L DVT+E + F + KGFG+ F+D +
Sbjct: 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLL 71
Query: 79 RANKEMN 85
A +N
Sbjct: 72 SA-LSLN 77
Score = 34.3 bits (78), Expect = 0.001
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
+ + F G+L DVT+E + F + KGFG+ F+D +
Sbjct: 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 72
Query: 145 ANKEMN 150
A +N
Sbjct: 73 A-LSLN 77
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 34.9 bits (80), Expect = 7e-04
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 145
DD + +L F++Y + LK + + + ++ +A
Sbjct: 3 DDTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKA 55
Query: 146 NKEMNEFPHLFVG 158
+++ +F
Sbjct: 56 ---LSKDGRIFGE 65
Score = 34.5 bits (79), Expect = 0.001
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 21 NDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRA 80
+D + +L F++Y + LK + + + ++ +A
Sbjct: 3 DDTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKA 55
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 35.1 bits (80), Expect = 7e-04
Identities = 13/72 (18%), Positives = 30/72 (41%)
Query: 14 KKTCEDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKD 73
E + L+ +L VT+ L+ F+++ + T + +G F++F +
Sbjct: 10 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 69
Query: 74 PQDFIRANKEMN 85
+ +A +N
Sbjct: 70 KEIAWQALHLVN 81
Score = 34.8 bits (79), Expect = 0.001
Identities = 12/62 (19%), Positives = 28/62 (45%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L+ +L VT+ L+ F+++ + T + +G F++F + + +A
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 79
Query: 149 MN 150
+N
Sbjct: 80 VN 81
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 34.4 bits (78), Expect = 0.001
Identities = 7/64 (10%), Positives = 21/64 (32%)
Query: 22 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
+ L+ + T + + + R N ++ F ++ +D
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 82 KEMN 85
+++N
Sbjct: 61 EKLN 64
Score = 34.4 bits (78), Expect = 0.001
Identities = 7/64 (10%), Positives = 21/64 (32%)
Query: 87 DFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 146
+ L+ + T + + + R N ++ F ++ +D
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 147 KEMN 150
+++N
Sbjct: 61 EKLN 64
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 33.5 bits (76), Expect = 0.002
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
L+ D+T LL FS + + D + + FV+++ + +A E
Sbjct: 7 TLYVYGE--DMTPTLLRGAFSPFGNI------IDLSMDPPRNCAFVTYEKMESADQAVAE 58
Query: 84 MN 85
+N
Sbjct: 59 LN 60
Score = 33.5 bits (76), Expect = 0.002
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
L+ D+T LL FS + + D + + FV+++ + +A E
Sbjct: 7 TLYVYGE--DMTPTLLRGAFSPFGNI------IDLSMDPPRNCAFVTYEKMESADQAVAE 58
Query: 149 MN 150
+N
Sbjct: 59 LN 60
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 33.6 bits (76), Expect = 0.002
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 85 NDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIR 144
DFR+ L + + L + + G G V + +D
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDV-------CYADVQKDGMGMVEYLRKEDMEY 65
Query: 145 ANKEMN 150
A ++++
Sbjct: 66 ALRKLD 71
Score = 33.6 bits (76), Expect = 0.003
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
+DFR+ L + + L + + G G V + +D
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDV-------CYADVQKDGMGMVEYLRKEDM 63
Query: 78 IRANKEMND 86
A ++++D
Sbjct: 64 EYALRKLDD 72
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 33.3 bits (75), Expect = 0.004
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
E + L + V + L + F +Y K+V D+ T +++G+GFV F+
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 78 IRANKEMN 85
+A +N
Sbjct: 98 QQAIAGLN 105
Score = 33.3 bits (75), Expect = 0.005
Identities = 18/79 (22%), Positives = 34/79 (43%)
Query: 72 KDPQDFIRANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGF 131
+ + N E + L + V + L + F +Y K+V D+ T +++G+
Sbjct: 27 QQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY 86
Query: 132 GFVSFKDPQDFIRANKEMN 150
GFV F+ +A +N
Sbjct: 87 GFVKFQSGSSAQQAIAGLN 105
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 32.8 bits (74), Expect = 0.006
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 80 ANKEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP 139
A ++ D L+ +L + ++ L K + + + + ++G GF +
Sbjct: 11 AKQQEQDPTNLYISNLPLSMDEQEL-ENMLKPFGQVISTRILRDSSGTSRGVGFARMEST 69
Query: 140 QDFIRANKEMN 150
+ N
Sbjct: 70 EKCEAVIGHFN 80
Score = 32.5 bits (73), Expect = 0.007
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
++++ L+ +L + ++ L K + + + + ++G GF + +
Sbjct: 14 QEQDPTNLYISNLPLSMDEQEL-ENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKC 72
Query: 78 IRANKEMN 85
N
Sbjct: 73 EAVIGHFN 80
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 31.2 bits (70), Expect = 0.020
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
RL+ G LG + + L R F ++ S K F ++ ++ A +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI------DHVKGDSFAYIQYESLDAAQAACAK 72
Query: 149 MNEFP 153
M FP
Sbjct: 73 MRGFP 77
Score = 30.8 bits (69), Expect = 0.024
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
RL+ G LG + + L R F ++ S K F ++ ++ A +
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI------DHVKGDSFAYIQYESLDAAQAACAK 72
Query: 84 MN 85
M
Sbjct: 73 MR 74
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 30.9 bits (69), Expect = 0.027
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDP-QDFIRANKE 83
F GDL + E L FS + + G + FK+ ++ + K+
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWI------DFVRGAKEGIILFKEKAKEALGKAKD 67
Query: 84 MNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDK--RTNKTKGFG 132
N+ G+L + + K++ D+ NK K G
Sbjct: 68 ANN------GNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKG 112
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 30.5 bits (68), Expect = 0.028
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 86 DDFRLFCGDLGNDVTDELLIRTF--SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFI 143
+ + +L ++ DE L+R K + F+ F++
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 144 RANKEMN 150
RA +MN
Sbjct: 63 RA-LQMN 68
Score = 30.5 bits (68), Expect = 0.030
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 24 RLFCGDLGNDVTDELLIRTF--SKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRAN 81
+ +L ++ DE L+R K + F+ F++ RA
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA- 64
Query: 82 KEMN 85
+MN
Sbjct: 65 LQMN 68
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 29.8 bits (66), Expect = 0.037
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 25 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 84
+ +L + + F + V + N F + F + A +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITKT 60
Query: 85 NDDF 88
+
Sbjct: 61 HKVV 64
Score = 29.4 bits (65), Expect = 0.053
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 90 LFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEM 149
+ +L + + F + V + N F + F + A +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALAAITKT 60
Query: 150 N 150
+
Sbjct: 61 H 61
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.0 bits (67), Expect = 0.054
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 29 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMND 86
D + E + SKY ++ R G FV F D +A + +
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 80
Query: 87 DFRLFCG 93
R F
Sbjct: 81 --RKFAN 85
Score = 29.6 bits (66), Expect = 0.075
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 94 DLGNDVTDELLIRTFSKYPSFLKAKVVRDKRT--NKTKGFGFVSFKDPQDFIRANKEMN 150
D + E + SKY ++ R G FV F D +A + +
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 79
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.3 bits (65), Expect = 0.064
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
+ +L D + + Y ++ ++ K FV+ + + A +
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQM 59
Query: 84 MN 85
+
Sbjct: 60 FH 61
Score = 29.3 bits (65), Expect = 0.064
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
+ +L D + + Y ++ ++ K FV+ + + A +
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQM 59
Query: 149 MN 150
+
Sbjct: 60 FH 61
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 27.8 bits (61), Expect = 0.27
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 18 EDENDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDF 77
D + ++ D T + + +R KG FV F +
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTLHKAFKGSIFVVFDSIESA 60
Query: 78 IRANKEMNDDF 88
+ + +
Sbjct: 61 KKFVETPGQKY 71
Score = 25.9 bits (56), Expect = 1.2
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 82 KEMNDDFRLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQD 141
K + ++ D T + + +R KG FV F +
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTLHKAFKGSIFVVFDSIES 59
Query: 142 FIRANKEMN 150
+ +
Sbjct: 60 AKKFVETPG 68
>d1n5ua2 a.126.1.1 (A:197-388) Serum albumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 27.5 bits (61), Expect = 0.66
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 5 RPGPISSWIKKTCEDENDFRLFC-GDLGNDVTDELLIRTFSKYPS 48
ISS +K+ CE + C ++ ND L + +
Sbjct: 71 NQDSISSKLKECCEKPLLEKSHCIAEVENDEMPADLPSLAADFVE 115
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 26.2 bits (58), Expect = 0.87
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 129 KGFGFVSFKDPQDFIRANKEMNEFPH 154
KGFGF+ + + +M + H
Sbjct: 28 KGFGFLEVDAQKSYFIPPPQMKKVMH 53
Score = 25.4 bits (56), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 64 KGFGFVSFKDPQDFIRANKEMNDDFRLFCGD 94
KGFGF+ + + +M ++ GD
Sbjct: 28 KGFGFLEVDAQKSYFIPPPQMK---KVMHGD 55
>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 159
Score = 26.9 bits (59), Expect = 1.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 63 TKGFGFVSFKDPQDF--IRANKEMNDDFRLFCGD 94
G G V+F +++ D++ L C D
Sbjct: 110 KDGAGDVAFIRESTVFEDLSDEAERDEYELLCPD 143
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 26.8 bits (59), Expect = 1.0
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 19 DENDFRLFCGDLGNDVTDELLIRTFSKY----PSFLKAKVVRDKRTNKTKGFGFVSFKDP 74
N +R+ G+ I + F + D R N G GF S
Sbjct: 43 TRNVYRII-SLDGSKAIINSTITPNMTFTKTSQKFGQ---WADSRANTVYGLGFSSEHHL 98
Query: 75 QDFIRANKEMNDDFRL 90
F +E + RL
Sbjct: 99 SKFAEKFQEFKEAARL 114
Score = 25.7 bits (56), Expect = 2.5
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 121 RDKRTNKTKGFGFVSFKDPQDFIRANKEMNEF 152
D R N G GF S F +E E
Sbjct: 80 ADSRANTVYGLGFSSEHHLSKFAEKFQEFKEA 111
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 24.5 bits (52), Expect = 3.4
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 24 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 83
R+ L + + L + A V RD F +D A ++
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVE-------FVRKEDMTYAVRK 54
Query: 84 MND 86
+++
Sbjct: 55 LDN 57
Score = 24.5 bits (52), Expect = 3.7
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 89 RLFCGDLGNDVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKE 148
R+ L + + L + A V RD F +D A ++
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVE-------FVRKEDMTYAVRK 54
Query: 149 MN 150
++
Sbjct: 55 LD 56
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 24.8 bits (54), Expect = 4.0
Identities = 12/69 (17%), Positives = 23/69 (33%)
Query: 34 VTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGFVSFKDPQDFIRANKEMNDDFRLFCG 93
++ E R ++ P + V D + KG + ++ +N L
Sbjct: 19 ISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLNGVLTLVLE 78
Query: 94 DLGNDVTDE 102
+ G V E
Sbjct: 79 EDGTAVDSE 87
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
caldolyticus [TaxId: 1394]}
Length = 66
Score = 23.6 bits (51), Expect = 5.3
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 123 KRTNKTKGFGFVSFKDPQD--FIRANKEMNEFPHLFVGD 159
K N KG+GF+ + D + F L G
Sbjct: 7 KWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQ 45
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga
maritima [TaxId: 2336]}
Length = 66
Score = 23.6 bits (51), Expect = 6.0
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 50 LKAKVVRDKRTNKTKGFGFVSFKDPQD-FIRANKEMNDDFR 89
++ KV K + KG+GF++ + D F+ + + F+
Sbjct: 1 MRGKV---KWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFK 38
Score = 22.8 bits (49), Expect = 9.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 115 LKAKVVRDKRTNKTKGFGFVSFKDPQD--FIRANKEMNEFPHLFVGD 159
++ KV K + KG+GF++ + D + EM F L G
Sbjct: 1 MRGKV---KWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQ 44
>d1gv8a_ c.94.1.2 (A:) Ovotransferrin {Duck (Anas platyrhynchos)
[TaxId: 8839]}
Length = 159
Score = 24.5 bits (53), Expect = 6.5
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 63 TKGFGFVSFKDPQDFIRANKEMNDDFRLFCGD 94
G G V+F E D++ L C D
Sbjct: 109 KDGKGDVAFVKHTTVQENAPEEKDEYELLCLD 140
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 105
Score = 23.4 bits (50), Expect = 9.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 12 WIKKTCEDENDFRLFCGDLGN---DVTDELLIRTFSKYPSFLKAKVVRDKRTNKTKGFGF 68
T E+ L ++G + + + +S + A +V D+ TN T G
Sbjct: 44 VDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRT-TGAFIVIDRLTNGTVAAGM 102
Query: 69 V 69
+
Sbjct: 103 I 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.426
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,177
Number of extensions: 29239
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 169
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)