Query psy7848
Match_columns 754
No_of_seqs 439 out of 2209
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 20:22:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 5.2E-47 1.1E-51 423.0 27.4 270 467-749 149-420 (421)
2 KOG1013|consensus 100.0 4.2E-37 9.2E-42 319.1 4.9 282 465-750 73-356 (362)
3 PF02318 FYVE_2: FYVE-type zin 100.0 9E-35 2E-39 270.8 8.4 113 86-209 1-117 (118)
4 cd08407 C2B_Synaptotagmin-13 C 100.0 3.3E-31 7.1E-36 253.4 12.7 135 614-748 1-138 (138)
5 cd08406 C2B_Synaptotagmin-12 C 100.0 2.5E-30 5.3E-35 247.1 12.6 135 614-748 1-136 (136)
6 cd08692 C2B_Tac2-N C2 domain s 100.0 1.3E-29 2.9E-34 240.0 12.8 132 615-747 1-135 (135)
7 cd08408 C2B_Synaptotagmin-14_1 100.0 3.1E-28 6.6E-33 233.4 12.8 134 615-748 2-138 (138)
8 cd08409 C2B_Synaptotagmin-15 C 99.9 1.3E-27 2.9E-32 228.7 12.9 133 614-747 1-136 (137)
9 cd08402 C2B_Synaptotagmin-1 C2 99.9 2.5E-27 5.4E-32 226.0 13.3 135 614-748 1-136 (136)
10 cd08410 C2B_Synaptotagmin-17 C 99.9 4.7E-27 1E-31 224.2 12.9 133 615-747 1-135 (135)
11 cd08384 C2B_Rabphilin_Doc2 C2 99.9 6.1E-27 1.3E-31 222.2 12.7 132 616-747 1-133 (133)
12 cd08405 C2B_Synaptotagmin-7 C2 99.9 1.3E-26 2.7E-31 221.2 12.7 135 614-748 1-136 (136)
13 cd08403 C2B_Synaptotagmin-3-5- 99.9 1.8E-26 4E-31 219.5 12.7 133 615-747 1-134 (134)
14 cd08404 C2B_Synaptotagmin-4 C2 99.9 2.5E-26 5.4E-31 219.2 13.1 134 614-747 1-135 (136)
15 cd08677 C2A_Synaptotagmin-13 C 99.9 1.1E-25 2.5E-30 208.5 11.1 116 615-733 1-118 (118)
16 cd00276 C2B_Synaptotagmin C2 d 99.9 1.4E-24 3.1E-29 205.4 12.9 133 615-747 1-134 (134)
17 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 2.9E-24 6.2E-29 211.4 13.6 135 614-748 1-162 (162)
18 cd08680 C2_Kibra C2 domain fou 99.9 1.1E-23 2.4E-28 198.1 10.6 117 616-732 2-123 (124)
19 cd08393 C2A_SLP-1_2 C2 domain 99.9 2.1E-23 4.5E-28 196.5 11.8 110 614-723 1-112 (125)
20 cd04029 C2A_SLP-4_5 C2 domain 99.9 4.1E-23 8.8E-28 194.6 12.7 123 614-748 1-125 (125)
21 cd08392 C2A_SLP-3 C2 domain fi 99.9 3.6E-23 7.9E-28 195.8 10.7 110 614-723 1-112 (128)
22 cd08677 C2A_Synaptotagmin-13 C 99.9 1.7E-22 3.6E-27 187.4 13.0 114 472-590 1-115 (118)
23 cd08381 C2B_PI3K_class_II C2 d 99.9 7.4E-23 1.6E-27 192.1 10.2 107 614-723 1-109 (122)
24 KOG2059|consensus 99.9 2E-22 4.4E-27 225.8 14.8 236 484-752 4-256 (800)
25 cd04028 C2B_RIM1alpha C2 domai 99.9 6E-22 1.3E-26 191.1 13.9 124 611-751 14-140 (146)
26 cd08393 C2A_SLP-1_2 C2 domain 99.9 6.3E-22 1.4E-26 186.4 13.8 122 471-593 1-124 (125)
27 cd08381 C2B_PI3K_class_II C2 d 99.9 1.3E-21 2.8E-26 183.7 13.8 119 472-593 2-121 (122)
28 cd08392 C2A_SLP-3 C2 domain fi 99.9 3.3E-21 7.1E-26 182.5 14.2 113 471-584 1-115 (128)
29 cd04029 C2A_SLP-4_5 C2 domain 99.9 4.7E-21 1E-25 180.6 14.7 122 471-593 1-124 (125)
30 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.6E-21 5.7E-26 181.4 12.7 109 614-723 2-110 (124)
31 cd08389 C2A_Synaptotagmin-14_1 99.9 2.9E-21 6.3E-26 181.7 12.0 122 614-749 2-124 (124)
32 cd08385 C2A_Synaptotagmin-1-5- 99.9 1.8E-21 4E-26 182.4 10.1 119 614-733 2-122 (124)
33 cd08680 C2_Kibra C2 domain fou 99.8 6.1E-21 1.3E-25 179.6 12.8 111 473-584 2-114 (124)
34 cd08389 C2A_Synaptotagmin-14_1 99.8 8.9E-21 1.9E-25 178.4 13.6 121 471-594 2-123 (124)
35 cd08388 C2A_Synaptotagmin-4-11 99.8 7.5E-21 1.6E-25 179.9 12.9 126 613-749 1-128 (128)
36 cd08388 C2A_Synaptotagmin-4-11 99.8 1.5E-20 3.2E-25 178.0 14.8 121 471-593 2-126 (128)
37 cd04030 C2C_KIAA1228 C2 domain 99.8 4.1E-21 8.8E-26 180.5 10.7 111 613-723 1-114 (127)
38 cd08685 C2_RGS-like C2 domain 99.8 5.1E-21 1.1E-25 178.9 10.5 117 615-747 1-119 (119)
39 cd08521 C2A_SLP C2 domain firs 99.8 5.2E-21 1.1E-25 178.7 10.2 109 615-723 1-111 (123)
40 cd08386 C2A_Synaptotagmin-7 C2 99.8 2.7E-20 5.7E-25 174.6 12.9 124 613-749 1-125 (125)
41 cd04028 C2B_RIM1alpha C2 domai 99.8 5.5E-20 1.2E-24 177.5 15.3 120 469-594 15-137 (146)
42 cd04031 C2A_RIM1alpha C2 domai 99.8 1.1E-20 2.3E-25 177.0 10.1 109 614-722 2-112 (125)
43 cd08385 C2A_Synaptotagmin-1-5- 99.8 5.1E-20 1.1E-24 172.6 14.5 122 470-594 1-123 (124)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 5E-20 1.1E-24 172.8 14.2 121 470-593 1-122 (124)
45 KOG1013|consensus 99.8 1.4E-20 3E-25 196.5 9.3 258 56-581 70-329 (362)
46 cd04031 C2A_RIM1alpha C2 domai 99.8 9.2E-20 2E-24 170.7 13.9 122 471-593 2-124 (125)
47 cd08521 C2A_SLP C2 domain firs 99.8 1E-19 2.2E-24 169.9 14.1 120 472-592 1-122 (123)
48 cd08407 C2B_Synaptotagmin-13 C 99.8 5.1E-20 1.1E-24 176.3 12.2 109 471-580 1-112 (138)
49 cd08406 C2B_Synaptotagmin-12 C 99.8 5.6E-20 1.2E-24 175.8 12.2 110 471-581 1-111 (136)
50 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.2E-19 2.6E-24 170.2 14.1 122 471-594 2-124 (125)
51 cd04030 C2C_KIAA1228 C2 domain 99.8 1.7E-19 3.7E-24 169.5 14.9 122 471-593 2-126 (127)
52 cd08390 C2A_Synaptotagmin-15-1 99.8 9.8E-20 2.1E-24 170.2 12.9 108 615-723 1-109 (123)
53 KOG0696|consensus 99.8 3.1E-20 6.7E-25 198.5 7.7 129 605-736 159-289 (683)
54 cd08685 C2_RGS-like C2 domain 99.8 3E-19 6.5E-24 166.9 13.2 114 472-590 1-116 (119)
55 cd08390 C2A_Synaptotagmin-15-1 99.8 4.2E-19 9.1E-24 165.9 14.1 120 472-594 1-122 (123)
56 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 4.8E-19 1E-23 174.4 13.5 123 471-593 1-136 (162)
57 cd08395 C2C_Munc13 C2 domain t 99.8 6E-19 1.3E-23 165.0 12.5 108 629-749 1-112 (120)
58 cd04035 C2A_Rabphilin_Doc2 C2 99.8 9.3E-19 2E-23 163.9 13.8 123 471-593 1-123 (123)
59 cd08682 C2_Rab11-FIP_classI C2 99.8 8.2E-19 1.8E-23 165.2 12.0 107 630-750 1-110 (126)
60 cd08409 C2B_Synaptotagmin-15 C 99.8 5.3E-19 1.1E-23 169.3 10.8 121 471-593 1-122 (137)
61 cd08404 C2B_Synaptotagmin-4 C2 99.8 1.4E-18 3.1E-23 165.8 11.4 109 471-580 1-110 (136)
62 cd08408 C2B_Synaptotagmin-14_1 99.8 2.7E-18 5.8E-23 164.7 12.5 110 472-582 2-113 (138)
63 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.6E-18 3.5E-23 165.3 10.9 110 471-581 1-111 (136)
64 cd04009 C2B_Munc13-like C2 dom 99.8 2.5E-18 5.5E-23 163.6 11.6 109 614-722 2-115 (133)
65 cd08403 C2B_Synaptotagmin-3-5- 99.8 3.7E-18 8E-23 162.4 11.7 108 472-580 1-109 (134)
66 cd08402 C2B_Synaptotagmin-1 C2 99.8 4.4E-18 9.6E-23 162.3 12.0 110 471-581 1-111 (136)
67 cd08395 C2C_Munc13 C2 domain t 99.8 7.8E-18 1.7E-22 157.5 12.6 113 486-599 1-116 (120)
68 cd08384 C2B_Rabphilin_Doc2 C2 99.8 5.9E-18 1.3E-22 160.7 11.9 107 473-580 1-108 (133)
69 cd04010 C2B_RasA3 C2 domain se 99.7 5.4E-18 1.2E-22 164.3 11.1 94 629-724 1-108 (148)
70 cd04035 C2A_Rabphilin_Doc2 C2 99.7 5.3E-18 1.2E-22 158.8 10.6 115 614-729 1-117 (123)
71 COG5038 Ca2+-dependent lipid-b 99.7 3.7E-17 8.1E-22 192.8 19.4 232 480-725 706-1132(1227)
72 cd08410 C2B_Synaptotagmin-17 C 99.7 1.2E-17 2.7E-22 159.4 12.7 109 472-581 1-110 (135)
73 cd04009 C2B_Munc13-like C2 dom 99.7 1.8E-17 3.9E-22 157.7 13.0 113 470-583 1-118 (133)
74 cd08688 C2_KIAA0528-like C2 do 99.7 8.9E-18 1.9E-22 154.5 10.3 106 630-749 1-109 (110)
75 cd04016 C2_Tollip C2 domain pr 99.7 3.4E-17 7.3E-22 153.5 14.1 117 485-623 2-121 (121)
76 cd08682 C2_Rab11-FIP_classI C2 99.7 3.3E-17 7.2E-22 154.2 13.0 120 487-622 1-126 (126)
77 cd04026 C2_PKC_alpha_gamma C2 99.7 2.8E-17 6.2E-22 155.5 12.3 106 614-722 1-107 (131)
78 cd00276 C2B_Synaptotagmin C2 d 99.7 2.7E-17 6E-22 155.5 11.2 119 472-593 1-120 (134)
79 cd08692 C2B_Tac2-N C2 domain s 99.7 5.9E-17 1.3E-21 153.9 12.1 107 473-581 2-110 (135)
80 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.1E-16 2.4E-21 149.6 13.4 120 486-625 1-121 (121)
81 cd04022 C2A_MCTP_PRT_plant C2 99.7 9.4E-17 2E-21 151.4 13.1 122 486-623 1-125 (127)
82 KOG1028|consensus 99.7 3.6E-17 7.8E-22 183.5 11.9 123 611-734 150-274 (421)
83 cd04050 C2B_Synaptotagmin-like 99.7 6.4E-17 1.4E-21 147.5 11.2 102 630-750 2-103 (105)
84 cd04016 C2_Tollip C2 domain pr 99.7 8.7E-17 1.9E-21 150.7 11.7 100 628-735 2-105 (121)
85 cd04022 C2A_MCTP_PRT_plant C2 99.7 7.3E-17 1.6E-21 152.1 11.0 91 629-723 1-93 (127)
86 cd04019 C2C_MCTP_PRT_plant C2 99.7 8.8E-17 1.9E-21 156.3 11.5 89 629-723 1-90 (150)
87 cd04041 C2A_fungal C2 domain f 99.7 4.2E-17 9E-22 150.3 8.7 94 628-722 1-96 (111)
88 cd04010 C2B_RasA3 C2 domain se 99.7 1.7E-16 3.7E-21 153.9 13.2 107 486-594 1-121 (148)
89 KOG1030|consensus 99.7 7.3E-17 1.6E-21 155.8 9.7 97 628-731 6-102 (168)
90 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.7E-16 3.7E-21 149.8 11.5 99 629-734 1-110 (126)
91 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.9E-16 4E-21 146.6 11.6 99 630-734 2-102 (116)
92 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.7E-16 3.6E-21 148.6 11.3 89 629-723 1-89 (123)
93 cd08681 C2_fungal_Inn1p-like C 99.7 2.1E-16 4.6E-21 146.7 11.7 117 485-623 1-118 (118)
94 cd08376 C2B_MCTP_PRT C2 domain 99.7 4.2E-16 9E-21 144.3 13.1 114 486-624 1-115 (116)
95 cd04018 C2C_Ferlin C2 domain t 99.7 1.5E-16 3.3E-21 154.6 10.5 89 629-722 1-103 (151)
96 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.4E-16 7.4E-21 148.3 12.7 129 486-623 1-132 (133)
97 cd08375 C2_Intersectin C2 doma 99.7 2.9E-16 6.4E-21 150.2 12.1 114 624-750 11-124 (136)
98 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 3.6E-16 7.7E-21 146.6 12.2 104 630-751 2-106 (121)
99 cd04036 C2_cPLA2 C2 domain pre 99.7 4.3E-16 9.3E-21 145.1 12.6 116 487-623 2-117 (119)
100 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.9E-16 4.2E-21 147.9 10.1 103 629-737 1-105 (121)
101 KOG3799|consensus 99.7 7.9E-17 1.7E-21 147.5 6.9 116 84-208 6-129 (169)
102 cd04026 C2_PKC_alpha_gamma C2 99.7 7.7E-16 1.7E-20 145.7 13.4 118 471-593 1-119 (131)
103 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 9E-16 1.9E-20 143.9 13.1 118 487-623 2-121 (121)
104 cd04039 C2_PSD C2 domain prese 99.7 4E-16 8.7E-21 143.4 10.5 90 628-722 1-94 (108)
105 cd08375 C2_Intersectin C2 doma 99.7 7.5E-16 1.6E-20 147.4 12.7 122 483-623 13-135 (136)
106 cd08681 C2_fungal_Inn1p-like C 99.7 2.3E-16 5E-21 146.4 8.9 102 628-736 1-105 (118)
107 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.3E-15 2.8E-20 148.2 14.2 135 486-630 1-138 (150)
108 KOG0696|consensus 99.7 9.2E-17 2E-21 172.2 6.7 112 469-584 166-278 (683)
109 cd04037 C2E_Ferlin C2 domain f 99.7 8.8E-16 1.9E-20 144.5 12.6 108 630-742 2-109 (124)
110 cd04036 C2_cPLA2 C2 domain pre 99.7 5.8E-16 1.3E-20 144.2 11.2 89 630-722 2-90 (119)
111 cd08378 C2B_MCTP_PRT_plant C2 99.7 5.9E-16 1.3E-20 145.1 10.9 118 487-623 2-119 (121)
112 cd04024 C2A_Synaptotagmin-like 99.6 7.8E-16 1.7E-20 144.5 11.4 89 628-722 1-91 (128)
113 cd04011 C2B_Ferlin C2 domain s 99.6 5.4E-16 1.2E-20 142.7 10.0 106 626-749 2-110 (111)
114 cd04025 C2B_RasA1_RasA4 C2 dom 99.6 2E-15 4.2E-20 141.4 13.6 121 486-621 1-122 (123)
115 cd08379 C2D_MCTP_PRT_plant C2 99.6 8.4E-16 1.8E-20 145.1 10.9 100 486-594 1-110 (126)
116 cd04041 C2A_fungal C2 domain f 99.6 8.1E-16 1.7E-20 141.8 10.6 96 485-583 1-99 (111)
117 cd04017 C2D_Ferlin C2 domain f 99.6 1.1E-15 2.4E-20 145.8 11.8 110 629-750 2-118 (135)
118 cd08676 C2A_Munc13-like C2 dom 99.6 4.2E-16 9E-21 151.9 8.9 95 622-722 22-141 (153)
119 cd04015 C2_plant_PLD C2 domain 99.6 2.4E-15 5.3E-20 147.5 14.1 123 484-624 6-158 (158)
120 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.1E-15 2.4E-20 143.0 11.2 104 630-750 2-105 (121)
121 cd08678 C2_C21orf25-like C2 do 99.6 2.4E-15 5.2E-20 141.7 13.2 122 487-627 1-123 (126)
122 cd04027 C2B_Munc13 C2 domain s 99.6 1.3E-15 2.7E-20 143.9 10.9 112 629-747 2-125 (127)
123 cd08675 C2B_RasGAP C2 domain s 99.6 1.6E-15 3.4E-20 145.4 11.5 109 630-751 1-122 (137)
124 cd08378 C2B_MCTP_PRT_plant C2 99.6 9.1E-16 2E-20 143.8 9.5 84 629-723 1-84 (121)
125 cd08690 C2_Freud-1 C2 domain f 99.6 9.9E-16 2.1E-20 149.2 9.7 106 630-735 4-121 (155)
126 cd08391 C2A_C2C_Synaptotagmin_ 99.6 3.3E-15 7.2E-20 138.8 12.8 115 485-623 1-121 (121)
127 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 1.9E-15 4.1E-20 143.3 11.3 90 630-722 2-94 (133)
128 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.1E-15 2.5E-20 141.7 9.5 101 628-735 1-101 (119)
129 COG5038 Ca2+-dependent lipid-b 99.6 7.8E-15 1.7E-19 173.4 18.5 225 484-722 435-799 (1227)
130 cd04024 C2A_Synaptotagmin-like 99.6 5.1E-15 1.1E-19 139.0 13.5 125 485-623 1-128 (128)
131 cd08678 C2_C21orf25-like C2 do 99.6 4E-15 8.7E-20 140.1 12.5 86 630-722 1-86 (126)
132 cd08688 C2_KIAA0528-like C2 do 99.6 2.5E-15 5.4E-20 138.3 10.3 91 487-583 1-94 (110)
133 cd08400 C2_Ras_p21A1 C2 domain 99.6 7.4E-15 1.6E-19 138.6 13.6 121 485-626 4-125 (126)
134 cd04049 C2_putative_Elicitor-r 99.6 4.5E-15 9.7E-20 139.2 11.6 109 628-752 1-111 (124)
135 cd08391 C2A_C2C_Synaptotagmin_ 99.6 2.1E-15 4.6E-20 140.1 9.1 88 628-722 1-94 (121)
136 cd04043 C2_Munc13_fungal C2 do 99.6 7.5E-15 1.6E-19 137.8 12.7 103 629-734 2-109 (126)
137 cd04046 C2_Calpain C2 domain p 99.6 1.2E-14 2.6E-19 137.0 14.1 121 485-625 3-123 (126)
138 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.1E-14 2.3E-19 135.3 13.1 117 485-623 1-118 (119)
139 cd04044 C2A_Tricalbin-like C2 99.6 8.4E-15 1.8E-19 136.7 12.4 121 485-625 2-124 (124)
140 cd04015 C2_plant_PLD C2 domain 99.6 3.2E-15 6.9E-20 146.7 9.8 106 628-740 7-144 (158)
141 cd04032 C2_Perforin C2 domain 99.6 4E-15 8.8E-20 140.6 10.0 90 628-723 28-117 (127)
142 KOG1030|consensus 99.6 3.3E-15 7.1E-20 144.5 9.5 95 484-587 5-100 (168)
143 cd04038 C2_ArfGAP C2 domain pr 99.6 6E-15 1.3E-19 142.7 10.9 111 628-747 2-113 (145)
144 cd04017 C2D_Ferlin C2 domain f 99.6 1.8E-14 4E-19 137.4 13.9 124 486-625 2-133 (135)
145 cd04043 C2_Munc13_fungal C2 do 99.6 2E-14 4.4E-19 134.9 13.6 118 485-625 1-122 (126)
146 cd04039 C2_PSD C2 domain prese 99.6 9.5E-15 2.1E-19 134.3 10.8 93 485-584 1-98 (108)
147 cd04045 C2C_Tricalbin-like C2 99.6 7.4E-15 1.6E-19 137.5 10.2 105 628-738 1-106 (120)
148 cd08400 C2_Ras_p21A1 C2 domain 99.6 1.2E-14 2.6E-19 137.1 11.3 98 628-734 4-103 (126)
149 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 2.2E-14 4.8E-19 134.3 12.9 118 486-622 1-120 (121)
150 cd04014 C2_PKC_epsilon C2 doma 99.6 1.5E-14 3.2E-19 137.3 11.8 100 628-734 4-117 (132)
151 cd08690 C2_Freud-1 C2 domain f 99.6 3.4E-14 7.4E-19 138.5 14.2 125 487-625 4-138 (155)
152 cd04046 C2_Calpain C2 domain p 99.6 7.9E-15 1.7E-19 138.3 9.5 99 628-734 3-101 (126)
153 cd04014 C2_PKC_epsilon C2 doma 99.6 2.8E-14 6.1E-19 135.4 13.2 115 484-625 3-130 (132)
154 cd08394 C2A_Munc13 C2 domain f 99.6 1.3E-14 2.7E-19 136.3 10.3 84 628-723 2-85 (127)
155 cd08373 C2A_Ferlin C2 domain f 99.6 3E-14 6.4E-19 134.3 12.8 119 491-629 2-121 (127)
156 cd08382 C2_Smurf-like C2 domai 99.6 2E-14 4.4E-19 134.9 11.3 98 629-733 1-103 (123)
157 cd04048 C2A_Copine C2 domain f 99.6 1.2E-14 2.5E-19 135.8 8.9 89 632-722 4-99 (120)
158 cd04047 C2B_Copine C2 domain s 99.5 1E-14 2.2E-19 133.8 8.1 100 630-732 2-107 (110)
159 cd04011 C2B_Ferlin C2 domain s 99.5 3.2E-14 6.9E-19 131.0 11.1 95 483-586 2-98 (111)
160 cd08382 C2_Smurf-like C2 domai 99.5 5.8E-14 1.3E-18 131.8 12.6 117 487-621 2-122 (123)
161 cd08691 C2_NEDL1-like C2 domai 99.5 7.1E-14 1.5E-18 133.9 12.8 107 630-751 3-123 (137)
162 cd04050 C2B_Synaptotagmin-like 99.5 4E-14 8.6E-19 129.1 10.6 88 487-584 2-89 (105)
163 cd08373 C2A_Ferlin C2 domain f 99.5 3E-14 6.4E-19 134.3 9.9 100 634-739 2-103 (127)
164 cd04027 C2B_Munc13 C2 domain s 99.5 1E-13 2.2E-18 131.0 13.0 114 486-621 2-127 (127)
165 cd08686 C2_ABR C2 domain in th 99.5 4.5E-14 9.7E-19 131.0 10.3 84 630-722 1-92 (118)
166 cd08383 C2A_RasGAP C2 domain ( 99.5 2.5E-14 5.3E-19 132.3 8.5 99 630-735 2-100 (117)
167 cd08675 C2B_RasGAP C2 domain s 99.5 5.6E-14 1.2E-18 134.6 11.2 106 487-594 1-119 (137)
168 cd04049 C2_putative_Elicitor-r 99.5 6.6E-14 1.4E-18 131.3 10.6 103 485-593 1-106 (124)
169 cd04040 C2D_Tricalbin-like C2 99.5 1E-13 2.3E-18 127.9 11.5 88 630-722 1-88 (115)
170 cd04051 C2_SRC2_like C2 domain 99.5 8.2E-14 1.8E-18 130.7 10.6 91 629-722 1-94 (125)
171 cd04018 C2C_Ferlin C2 domain t 99.5 5E-14 1.1E-18 137.1 9.3 92 486-584 1-107 (151)
172 cd08676 C2A_Munc13-like C2 dom 99.5 7.4E-14 1.6E-18 136.1 10.4 98 479-582 22-143 (153)
173 cd04032 C2_Perforin C2 domain 99.5 1E-13 2.3E-18 131.0 10.1 91 484-582 27-118 (127)
174 cd04044 C2A_Tricalbin-like C2 99.5 1.7E-13 3.7E-18 127.8 11.4 90 628-722 2-92 (124)
175 cd04037 C2E_Ferlin C2 domain f 99.5 1.5E-13 3.2E-18 129.4 10.7 92 486-583 1-93 (124)
176 cd04048 C2A_Copine C2 domain f 99.5 1.6E-13 3.5E-18 128.0 10.5 102 489-593 4-112 (120)
177 cd04038 C2_ArfGAP C2 domain pr 99.5 2.6E-13 5.6E-18 131.3 11.9 90 485-584 2-92 (145)
178 cd04040 C2D_Tricalbin-like C2 99.5 2.9E-13 6.4E-18 124.9 11.7 101 487-594 1-102 (115)
179 cd08691 C2_NEDL1-like C2 domai 99.5 3.5E-13 7.7E-18 129.1 12.3 93 486-584 2-107 (137)
180 cd08394 C2A_Munc13 C2 domain f 99.5 3.1E-13 6.7E-18 127.0 11.3 101 485-602 2-102 (127)
181 cd08383 C2A_RasGAP C2 domain ( 99.5 6.8E-13 1.5E-17 122.6 13.0 115 487-623 2-117 (117)
182 cd04045 C2C_Tricalbin-like C2 99.5 3.8E-13 8.2E-18 125.9 10.9 99 485-592 1-100 (120)
183 cd08374 C2F_Ferlin C2 domain s 99.5 2.3E-13 4.9E-18 129.3 9.3 93 629-722 1-120 (133)
184 cd04047 C2B_Copine C2 domain s 99.4 4.9E-13 1.1E-17 122.6 10.6 99 487-589 2-106 (110)
185 cd04051 C2_SRC2_like C2 domain 99.4 4.7E-13 1E-17 125.6 10.1 96 486-586 1-100 (125)
186 PLN03008 Phospholipase D delta 99.4 4.8E-13 1E-17 156.6 12.4 125 484-626 13-179 (868)
187 cd00275 C2_PLC_like C2 domain 99.4 4.7E-13 1E-17 125.5 8.9 104 629-736 3-111 (128)
188 cd04013 C2_SynGAP_like C2 doma 99.4 1.7E-12 3.7E-17 125.4 12.7 126 485-626 11-141 (146)
189 cd08686 C2_ABR C2 domain in th 99.4 8.8E-13 1.9E-17 122.4 9.8 83 487-579 1-91 (118)
190 cd04021 C2_E3_ubiquitin_ligase 99.4 1.5E-12 3.3E-17 122.6 11.5 86 629-722 3-88 (125)
191 PF00168 C2: C2 domain; Inter 99.4 7.2E-13 1.6E-17 114.0 8.1 85 630-717 1-85 (85)
192 cd00275 C2_PLC_like C2 domain 99.4 4.1E-12 8.8E-17 119.2 12.9 121 486-623 3-127 (128)
193 KOG1326|consensus 99.4 5.3E-13 1.1E-17 155.5 7.0 236 484-726 612-970 (1105)
194 cd04021 C2_E3_ubiquitin_ligase 99.3 6.7E-12 1.5E-16 118.3 12.0 90 485-584 2-92 (125)
195 cd04052 C2B_Tricalbin-like C2 99.3 4.2E-12 9E-17 117.1 10.2 102 502-625 9-110 (111)
196 KOG1328|consensus 99.3 8.9E-13 1.9E-17 148.5 4.3 111 612-722 931-1046(1103)
197 cd04052 C2B_Tricalbin-like C2 99.3 6.5E-12 1.4E-16 115.8 8.9 86 644-735 8-96 (111)
198 PLN03008 Phospholipase D delta 99.3 6.6E-12 1.4E-16 147.2 8.1 88 647-741 75-164 (868)
199 PF00168 C2: C2 domain; Inter 99.3 2.5E-11 5.5E-16 104.3 9.8 84 487-575 1-85 (85)
200 cd04013 C2_SynGAP_like C2 doma 99.3 1.4E-11 3.1E-16 119.0 8.3 97 628-736 11-114 (146)
201 PLN03200 cellulose synthase-in 99.2 7.6E-12 1.6E-16 158.7 8.0 101 628-735 1980-2082(2102)
202 KOG0905|consensus 99.2 6.6E-12 1.4E-16 147.5 5.6 111 611-723 1509-1621(1639)
203 KOG1326|consensus 99.2 2.9E-12 6.3E-17 149.4 2.5 87 630-722 615-703 (1105)
204 KOG0905|consensus 99.2 1.8E-11 3.9E-16 143.9 6.6 124 468-593 1509-1633(1639)
205 smart00239 C2 Protein kinase C 99.2 1E-10 2.2E-15 102.7 9.9 96 630-728 2-97 (101)
206 cd08374 C2F_Ferlin C2 domain s 99.2 9.5E-11 2E-15 111.5 10.3 96 486-584 1-124 (133)
207 PLN03200 cellulose synthase-in 99.2 5E-11 1.1E-15 151.4 10.7 120 484-625 1979-2101(2102)
208 KOG1011|consensus 99.1 3.7E-11 8.1E-16 133.8 5.7 106 628-740 295-411 (1283)
209 cd00030 C2 C2 domain. The C2 d 99.1 2.5E-10 5.4E-15 99.5 9.8 102 630-747 1-102 (102)
210 smart00239 C2 Protein kinase C 99.0 1.4E-09 3.1E-14 95.4 10.4 93 487-584 2-95 (101)
211 KOG1327|consensus 99.0 1.6E-09 3.5E-14 121.9 13.3 206 499-723 4-234 (529)
212 KOG1328|consensus 99.0 2.9E-10 6.2E-15 128.7 5.2 114 469-583 931-1049(1103)
213 cd00030 C2 C2 domain. The C2 d 99.0 2.8E-09 6E-14 92.8 10.0 89 487-582 1-90 (102)
214 KOG1011|consensus 98.9 9.2E-10 2E-14 123.0 6.8 99 485-594 295-405 (1283)
215 PLN02223 phosphoinositide phos 98.9 2.2E-09 4.7E-14 121.9 9.5 111 628-741 409-525 (537)
216 KOG1031|consensus 98.9 2.1E-09 4.5E-14 119.0 7.6 115 628-748 3-119 (1169)
217 PLN02952 phosphoinositide phos 98.9 4.6E-09 1E-13 121.5 10.6 112 628-742 470-588 (599)
218 PLN02223 phosphoinositide phos 98.8 1.3E-08 2.8E-13 115.7 11.0 97 485-584 409-511 (537)
219 PLN02230 phosphoinositide phos 98.8 8.1E-09 1.8E-13 119.3 8.8 110 628-740 469-585 (598)
220 PLN02222 phosphoinositide phos 98.8 1.6E-08 3.6E-13 116.6 10.0 111 628-741 452-569 (581)
221 PLN02952 phosphoinositide phos 98.8 4.2E-08 9E-13 113.7 12.9 97 485-584 470-573 (599)
222 PLN02270 phospholipase D alpha 98.7 5.8E-08 1.2E-12 114.6 12.0 125 484-626 7-150 (808)
223 cd08684 C2A_Tac2-N C2 domain f 98.7 1E-08 2.2E-13 89.1 4.2 99 632-733 3-103 (103)
224 KOG2059|consensus 98.7 1.9E-08 4E-13 114.8 7.1 87 628-721 5-91 (800)
225 KOG0169|consensus 98.7 2.3E-08 5E-13 115.7 7.3 108 629-739 617-730 (746)
226 PLN02230 phosphoinositide phos 98.7 5.6E-08 1.2E-12 112.4 10.2 98 484-584 468-572 (598)
227 KOG1031|consensus 98.7 3E-08 6.4E-13 110.1 7.0 125 485-622 3-134 (1169)
228 PLN02228 Phosphoinositide phos 98.7 4.9E-08 1.1E-12 112.4 8.9 112 628-742 431-550 (567)
229 PLN02222 phosphoinositide phos 98.6 1.4E-07 2.9E-12 109.2 11.2 97 485-584 452-555 (581)
230 PLN02228 Phosphoinositide phos 98.6 2.2E-07 4.7E-12 107.2 12.4 97 485-584 431-535 (567)
231 KOG1264|consensus 98.6 1.7E-07 3.7E-12 107.7 9.4 95 486-584 1066-1163(1267)
232 KOG2060|consensus 98.5 2.6E-07 5.7E-12 99.3 8.5 120 614-749 257-379 (405)
233 KOG0169|consensus 98.5 2.1E-07 4.6E-12 107.9 8.3 96 486-584 617-718 (746)
234 PLN02270 phospholipase D alpha 98.5 2.4E-07 5.2E-12 109.4 8.6 108 628-742 8-136 (808)
235 KOG1264|consensus 98.4 6.9E-07 1.5E-11 102.9 10.3 92 628-722 1065-1159(1267)
236 cd08689 C2_fungal_Pkc1p C2 dom 98.4 8.8E-07 1.9E-11 80.3 7.6 86 487-584 1-89 (109)
237 cd08689 C2_fungal_Pkc1p C2 dom 98.4 6.6E-07 1.4E-11 81.1 6.1 86 630-726 1-89 (109)
238 cd08683 C2_C2cd3 C2 domain fou 98.1 4.2E-06 9.2E-11 78.2 5.6 107 630-747 1-143 (143)
239 PLN02352 phospholipase D epsil 97.8 9.7E-05 2.1E-09 87.7 10.6 118 484-626 9-132 (758)
240 KOG2060|consensus 97.8 3.9E-05 8.5E-10 82.9 6.3 111 469-585 255-368 (405)
241 cd08683 C2_C2cd3 C2 domain fou 97.6 5.4E-05 1.2E-09 71.0 4.5 104 487-599 1-143 (143)
242 cd08684 C2A_Tac2-N C2 domain f 97.6 6.9E-05 1.5E-09 65.6 3.6 98 488-590 2-100 (103)
243 PLN02352 phospholipase D epsil 97.3 0.00034 7.3E-09 83.2 7.1 102 628-742 10-119 (758)
244 PLN02964 phosphatidylserine de 97.3 0.0003 6.6E-09 82.9 5.8 89 622-722 48-136 (644)
245 KOG1327|consensus 97.1 0.0012 2.7E-08 75.2 8.1 111 469-583 120-236 (529)
246 PLN02964 phosphatidylserine de 96.9 0.0019 4E-08 76.4 7.1 90 481-584 50-140 (644)
247 KOG3837|consensus 96.8 0.00057 1.2E-08 74.7 1.7 135 476-624 358-503 (523)
248 KOG1265|consensus 96.7 0.0021 4.6E-08 75.8 5.7 93 628-730 703-801 (1189)
249 cd08693 C2_PI3K_class_I_beta_d 96.4 0.0095 2.1E-07 59.6 7.7 93 628-722 8-119 (173)
250 KOG1265|consensus 96.3 0.0069 1.5E-07 71.7 7.0 91 485-584 703-797 (1189)
251 PF05715 zf-piccolo: Piccolo Z 96.3 0.0021 4.5E-08 51.9 1.6 58 136-198 3-61 (61)
252 cd08397 C2_PI3K_class_III C2 d 96.2 0.013 2.8E-07 57.8 7.4 77 646-722 27-106 (159)
253 cd08398 C2_PI3K_class_I_alpha 96.2 0.018 3.9E-07 56.8 8.0 91 628-722 8-105 (158)
254 PF12416 DUF3668: Cep120 prote 96.1 0.3 6.5E-06 53.9 18.1 218 487-722 2-292 (340)
255 cd08380 C2_PI3K_like C2 domain 96.1 0.017 3.6E-07 56.6 7.3 93 629-722 9-106 (156)
256 PF15627 CEP76-C2: CEP76 C2 do 95.2 0.14 3E-06 50.3 9.8 131 482-626 6-152 (156)
257 cd04012 C2A_PI3K_class_II C2 d 95.2 0.041 8.8E-07 54.9 6.3 95 628-722 8-118 (171)
258 cd08693 C2_PI3K_class_I_beta_d 94.8 0.1 2.2E-06 52.2 7.9 94 484-580 7-119 (173)
259 cd08399 C2_PI3K_class_I_gamma 94.8 0.099 2.1E-06 52.6 7.7 93 629-722 11-121 (178)
260 cd08398 C2_PI3K_class_I_alpha 94.6 0.12 2.7E-06 50.9 7.8 93 484-581 7-106 (158)
261 KOG3837|consensus 94.2 0.052 1.1E-06 59.9 4.6 95 627-721 366-471 (523)
262 PF00792 PI3K_C2: Phosphoinosi 94.2 0.14 3E-06 49.3 7.1 73 650-722 3-84 (142)
263 cd08380 C2_PI3K_like C2 domain 93.9 0.19 4.2E-06 49.1 7.6 96 484-581 7-107 (156)
264 cd00065 FYVE FYVE domain; Zinc 93.9 0.035 7.6E-07 44.7 1.9 52 135-194 2-56 (57)
265 PF01363 FYVE: FYVE zinc finge 93.5 0.03 6.5E-07 47.1 0.9 55 135-197 9-68 (69)
266 smart00064 FYVE Protein presen 93.2 0.059 1.3E-06 45.1 2.3 54 135-196 10-66 (68)
267 smart00142 PI3K_C2 Phosphoinos 93.2 0.23 5.1E-06 45.0 6.3 77 630-706 13-92 (100)
268 cd08397 C2_PI3K_class_III C2 d 92.8 0.27 5.8E-06 48.6 6.6 77 504-581 28-107 (159)
269 PF12416 DUF3668: Cep120 prote 92.7 0.41 8.9E-06 52.9 8.4 87 630-723 2-94 (340)
270 PF14429 DOCK-C2: C2 domain in 92.6 0.74 1.6E-05 46.3 9.7 60 665-724 60-122 (184)
271 PF10358 NT-C2: N-terminal C2 92.3 2.2 4.7E-05 40.7 12.0 121 485-625 7-136 (143)
272 PTZ00303 phosphatidylinositol 92.1 0.092 2E-06 61.7 2.6 63 136-201 461-534 (1374)
273 cd08695 C2_Dock-B C2 domains f 92.0 1.1 2.5E-05 45.4 10.0 58 521-579 52-112 (189)
274 PF15627 CEP76-C2: CEP76 C2 do 91.8 1.2 2.6E-05 43.8 9.6 102 626-739 7-121 (156)
275 PF14429 DOCK-C2: C2 domain in 91.8 1.6 3.5E-05 43.9 11.0 58 522-580 59-120 (184)
276 cd04012 C2A_PI3K_class_II C2 d 91.7 1 2.2E-05 45.0 9.3 97 484-581 7-119 (171)
277 cd08694 C2_Dock-A C2 domains f 91.1 1.7 3.6E-05 44.4 10.0 58 521-579 52-114 (196)
278 cd08399 C2_PI3K_class_I_gamma 91.1 1.8 4E-05 43.5 10.3 79 484-564 9-88 (178)
279 PRK12495 hypothetical protein; 90.0 0.59 1.3E-05 48.0 5.7 62 89-168 6-67 (226)
280 cd08694 C2_Dock-A C2 domains f 88.4 1.1 2.4E-05 45.6 6.4 58 664-721 53-114 (196)
281 cd08695 C2_Dock-B C2 domains f 87.8 2 4.3E-05 43.7 7.8 57 665-721 54-112 (189)
282 smart00142 PI3K_C2 Phosphoinos 86.4 3.4 7.4E-05 37.4 7.9 79 486-565 12-92 (100)
283 PF00792 PI3K_C2: Phosphoinosi 85.9 2.1 4.5E-05 41.2 6.6 73 508-581 4-85 (142)
284 KOG1452|consensus 85.6 2.5 5.4E-05 45.6 7.4 82 478-568 44-127 (442)
285 PF10358 NT-C2: N-terminal C2 85.4 7.3 0.00016 37.1 10.1 90 628-722 7-103 (143)
286 KOG1729|consensus 82.9 1 2.2E-05 48.6 3.3 56 134-197 167-225 (288)
287 KOG1818|consensus 79.6 1 2.2E-05 53.1 2.0 57 134-198 164-223 (634)
288 COG1996 RPC10 DNA-directed RNA 78.9 0.83 1.8E-05 36.1 0.6 29 135-169 6-34 (49)
289 cd08679 C2_DOCK180_related C2 75.9 7 0.00015 39.2 6.5 57 665-722 54-115 (178)
290 KOG4027|consensus 75.6 19 0.00041 35.5 8.9 93 648-753 25-128 (187)
291 cd08687 C2_PKN-like C2 domain 75.5 18 0.0004 32.5 8.1 63 506-580 9-71 (98)
292 PF03604 DNA_RNApol_7kD: DNA d 75.5 1.7 3.7E-05 31.3 1.4 26 137-169 2-27 (32)
293 cd08696 C2_Dock-C C2 domains f 71.9 12 0.00027 37.7 7.1 60 665-724 55-120 (179)
294 cd08697 C2_Dock-D C2 domains f 71.8 31 0.00066 35.1 9.9 59 521-580 55-123 (185)
295 PF14569 zf-UDP: Zinc-binding 70.6 1.5 3.2E-05 37.8 0.2 51 134-193 8-58 (80)
296 smart00659 RPOLCX RNA polymera 70.2 2.1 4.5E-05 33.1 0.9 27 136-169 3-29 (44)
297 PTZ00046 rifin; Provisional 67.1 2.6 5.7E-05 46.6 1.2 26 134-159 136-161 (358)
298 KOG1842|consensus 66.9 1.9 4.1E-05 48.4 0.1 40 131-178 176-215 (505)
299 KOG4275|consensus 66.6 1.2 2.6E-05 47.5 -1.5 49 136-198 45-93 (350)
300 cd08697 C2_Dock-D C2 domains f 66.0 21 0.00045 36.3 7.3 58 665-722 57-123 (185)
301 PF14471 DUF4428: Domain of un 64.3 2.3 4.9E-05 34.0 0.1 30 137-169 1-30 (51)
302 cd08679 C2_DOCK180_related C2 64.2 16 0.00035 36.5 6.2 57 522-580 53-115 (178)
303 KOG0906|consensus 62.5 10 0.00022 44.8 4.8 92 646-737 44-145 (843)
304 KOG1813|consensus 60.9 3.6 7.8E-05 44.1 0.8 42 138-196 244-285 (313)
305 PRK09458 pspB phage shock prot 60.2 22 0.00047 30.8 5.2 36 82-121 30-65 (75)
306 KOG0955|consensus 59.5 5 0.00011 50.4 1.8 52 134-195 218-269 (1051)
307 PF15625 CC2D2AN-C2: CC2D2A N- 59.4 42 0.00092 33.3 8.1 67 649-722 37-105 (168)
308 KOG4323|consensus 58.1 4.5 9.9E-05 46.2 1.1 67 135-208 168-238 (464)
309 PRK14714 DNA polymerase II lar 57.3 6.2 0.00014 50.0 2.1 45 135-193 667-716 (1337)
310 KOG1452|consensus 57.2 17 0.00037 39.5 5.0 81 621-708 44-126 (442)
311 PF11618 DUF3250: Protein of u 56.9 37 0.0008 31.4 6.7 71 665-747 12-87 (107)
312 PF04810 zf-Sec23_Sec24: Sec23 56.7 5.1 0.00011 30.2 0.8 32 161-197 4-35 (40)
313 COG5152 Uncharacterized conser 56.1 3 6.4E-05 42.1 -0.7 44 136-196 197-240 (259)
314 KOG2041|consensus 55.6 16 0.00034 43.7 4.8 77 103-194 1086-1164(1189)
315 cd08696 C2_Dock-C C2 domains f 55.6 46 0.001 33.6 7.6 57 522-579 54-117 (179)
316 PF10367 Vps39_2: Vacuolar sor 55.1 34 0.00073 30.6 6.1 32 114-146 58-89 (109)
317 PRK11595 DNA utilization prote 55.1 5.3 0.00012 41.6 1.0 46 136-195 6-57 (227)
318 KOG3576|consensus 54.3 2.4 5.3E-05 43.0 -1.6 57 134-195 116-182 (267)
319 PRK00420 hypothetical protein; 53.4 15 0.00032 34.3 3.4 30 111-146 5-34 (112)
320 PF13920 zf-C3HC4_3: Zinc fing 53.1 3.1 6.7E-05 32.6 -0.9 44 135-195 2-46 (50)
321 PF06667 PspB: Phage shock pro 52.8 32 0.0007 29.8 5.1 36 82-121 30-65 (75)
322 PRK06266 transcription initiat 51.1 17 0.00037 36.6 3.8 29 136-177 118-146 (178)
323 TIGR00570 cdk7 CDK-activating 50.5 6.9 0.00015 42.7 0.9 49 135-194 3-51 (309)
324 TIGR00373 conserved hypothetic 50.0 19 0.0004 35.6 3.8 29 136-177 110-138 (158)
325 PRK04023 DNA polymerase II lar 49.3 9.7 0.00021 47.2 2.0 43 134-195 625-672 (1121)
326 TIGR01477 RIFIN variant surfac 48.4 9.5 0.00021 42.2 1.6 25 135-159 140-165 (353)
327 PF15625 CC2D2AN-C2: CC2D2A N- 48.4 68 0.0015 31.9 7.6 70 505-582 36-107 (168)
328 TIGR02420 dksA RNA polymerase- 48.3 46 0.00099 30.7 5.9 51 108-167 59-109 (110)
329 PRK14559 putative protein seri 48.2 11 0.00023 45.6 2.1 32 159-195 15-50 (645)
330 smart00531 TFIIE Transcription 47.6 18 0.00038 35.2 3.2 33 112-146 78-110 (147)
331 PF09297 zf-NADH-PPase: NADH p 47.0 7.4 0.00016 27.7 0.3 27 135-167 3-29 (32)
332 PF02009 Rifin_STEVOR: Rifin/s 46.7 19 0.00042 39.3 3.6 24 135-158 93-117 (299)
333 COG5141 PHD zinc finger-contai 46.6 7.1 0.00015 44.4 0.3 47 136-193 194-241 (669)
334 KOG1329|consensus 45.0 25 0.00054 43.3 4.4 84 649-738 138-224 (887)
335 PLN02189 cellulose synthase 44.4 11 0.00024 47.1 1.5 52 134-194 33-84 (1040)
336 PLN02915 cellulose synthase A 43.6 12 0.00026 46.8 1.6 54 131-193 11-64 (1044)
337 PF00643 zf-B_box: B-box zinc 43.3 6.5 0.00014 29.4 -0.5 31 135-177 3-33 (42)
338 COG1645 Uncharacterized Zn-fin 43.2 9.3 0.0002 36.5 0.5 17 130-146 23-39 (131)
339 PRK14559 putative protein seri 43.0 13 0.00028 44.8 1.7 33 134-178 14-52 (645)
340 PLN03119 putative ADP-ribosyla 42.7 22 0.00048 41.6 3.4 51 108-178 4-54 (648)
341 PLN02638 cellulose synthase A 42.7 11 0.00024 47.3 1.1 51 134-193 16-66 (1079)
342 cd00350 rubredoxin_like Rubred 42.6 13 0.00028 26.8 1.0 27 168-197 2-28 (33)
343 COG1734 DksA DnaK suppressor p 41.9 24 0.00052 33.3 3.0 29 136-167 81-109 (120)
344 PF07162 B9-C2: Ciliary basal 41.6 1.1E+02 0.0024 30.3 7.9 81 634-720 8-101 (168)
345 KOG3507|consensus 41.6 10 0.00022 31.0 0.4 34 167-202 20-53 (62)
346 PF14835 zf-RING_6: zf-RING of 41.1 20 0.00042 30.1 2.0 50 136-212 8-58 (65)
347 TIGR00269 conserved hypothetic 41.1 38 0.00082 30.9 4.1 21 135-167 80-100 (104)
348 PLN02436 cellulose synthase A 41.0 14 0.0003 46.4 1.6 52 134-194 35-86 (1094)
349 PHA03158 hypothetical protein; 40.5 46 0.00099 33.7 4.8 42 87-128 229-270 (273)
350 PF04981 NMD3: NMD3 family ; 40.2 17 0.00036 38.2 1.9 9 138-146 1-9 (236)
351 TIGR02890 spore_yteA sporulati 40.2 52 0.0011 32.6 5.2 52 106-166 63-114 (159)
352 COG1675 TFA1 Transcription ini 40.1 33 0.00071 34.6 3.8 29 136-177 114-142 (176)
353 PLN02195 cellulose synthase A 39.7 14 0.0003 46.1 1.2 49 136-193 7-55 (977)
354 KOG2422|consensus 39.6 9.3 0.0002 44.7 -0.2 24 89-112 142-165 (665)
355 PF15227 zf-C3HC4_4: zinc fing 38.6 12 0.00025 28.5 0.3 42 138-192 1-42 (42)
356 PRK10778 dksA RNA polymerase-b 38.2 72 0.0016 31.4 5.8 49 110-167 92-140 (151)
357 PF11618 DUF3250: Protein of u 38.0 41 0.00088 31.1 3.8 60 522-584 11-76 (107)
358 PF04423 Rad50_zn_hook: Rad50 37.8 27 0.00059 27.8 2.3 27 113-146 5-31 (54)
359 COG3357 Predicted transcriptio 37.5 61 0.0013 29.0 4.5 44 117-166 36-83 (97)
360 PF13923 zf-C3HC4_2: Zinc fing 37.1 7.9 0.00017 28.6 -0.8 39 138-192 1-39 (39)
361 PF10409 PTEN_C2: C2 domain of 35.8 1.7E+02 0.0037 27.4 7.9 90 630-722 6-96 (134)
362 PF03833 PolC_DP2: DNA polymer 35.8 12 0.00026 45.7 0.0 12 135-146 655-666 (900)
363 cd08687 C2_PKN-like C2 domain 35.7 1.1E+02 0.0024 27.7 5.9 50 649-706 9-58 (98)
364 PLN02400 cellulose synthase 35.7 19 0.00041 45.4 1.5 51 134-193 35-85 (1085)
365 PF01780 Ribosomal_L37ae: Ribo 35.0 14 0.0003 33.1 0.2 21 184-208 51-71 (90)
366 COG1997 RPL43A Ribosomal prote 34.8 20 0.00044 31.8 1.2 11 184-194 51-61 (89)
367 COG2888 Predicted Zn-ribbon RN 34.4 16 0.00035 30.0 0.5 25 136-166 10-34 (61)
368 KOG1819|consensus 34.3 10 0.00022 43.1 -0.9 34 136-177 902-935 (990)
369 KOG2419|consensus 33.8 4 8.7E-05 47.8 -4.2 189 505-753 304-499 (975)
370 PF14445 Prok-RING_2: Prokaryo 33.7 5.7 0.00012 31.5 -2.1 48 134-198 6-53 (57)
371 PRK14890 putative Zn-ribbon RN 33.4 31 0.00068 28.4 2.0 45 135-193 7-55 (59)
372 PF08274 PhnA_Zn_Ribbon: PhnA 33.4 16 0.00035 26.0 0.3 24 136-166 3-26 (30)
373 KOG1329|consensus 33.3 90 0.0019 38.7 6.6 80 506-593 138-219 (887)
374 PF07295 DUF1451: Protein of u 33.1 1.2E+02 0.0026 29.7 6.3 22 84-105 29-50 (146)
375 PF05400 FliT: Flagellar prote 33.0 87 0.0019 26.5 4.9 43 85-127 35-77 (84)
376 PRK13715 conjugal transfer pro 33.0 58 0.0013 28.0 3.7 30 135-167 34-63 (73)
377 PRK11019 hypothetical protein; 32.8 49 0.0011 29.6 3.3 29 136-167 37-65 (88)
378 PF07191 zinc-ribbons_6: zinc- 32.5 11 0.00023 32.2 -0.8 46 136-203 2-47 (70)
379 PF12760 Zn_Tnp_IS1595: Transp 32.4 22 0.00047 27.5 0.9 11 184-194 35-45 (46)
380 KOG2932|consensus 31.9 20 0.00042 38.9 0.8 56 135-193 90-151 (389)
381 PF13639 zf-RING_2: Ring finge 31.7 6.7 0.00015 29.7 -2.0 43 137-193 2-44 (44)
382 PF01485 IBR: IBR domain; Int 31.3 32 0.00068 27.7 1.8 37 135-177 18-58 (64)
383 KOG0694|consensus 31.2 20 0.00043 42.9 0.7 67 504-579 26-93 (694)
384 PRK05580 primosome assembly pr 31.1 35 0.00077 41.5 2.9 21 169-195 410-430 (679)
385 PRK11032 hypothetical protein; 30.6 1.3E+02 0.0029 29.8 6.3 23 84-106 39-61 (160)
386 TIGR00599 rad18 DNA repair pro 30.6 15 0.00033 41.6 -0.3 59 134-209 25-83 (397)
387 PF12773 DZR: Double zinc ribb 30.2 33 0.00071 26.6 1.6 12 135-146 12-23 (50)
388 PF11682 DUF3279: Protein of u 29.9 33 0.00072 32.7 1.9 34 110-146 75-108 (128)
389 KOG2593|consensus 29.1 37 0.0008 38.5 2.3 30 114-146 109-139 (436)
390 KOG0954|consensus 29.0 62 0.0013 39.1 4.2 52 134-195 270-321 (893)
391 TIGR00595 priA primosomal prot 28.5 21 0.00046 41.8 0.4 22 168-195 241-262 (505)
392 TIGR01031 rpmF_bact ribosomal 28.5 30 0.00065 28.1 1.1 11 167-177 39-49 (55)
393 PRK12286 rpmF 50S ribosomal pr 28.3 29 0.00063 28.4 1.1 23 136-177 28-50 (57)
394 KOG1841|consensus 28.3 32 0.00068 43.3 1.8 66 135-208 557-627 (1287)
395 KOG4424|consensus 27.5 15 0.00032 42.9 -1.1 22 156-177 412-433 (623)
396 PF14909 SPATA6: Spermatogenes 27.4 5.1E+02 0.011 25.2 9.4 88 487-582 4-100 (140)
397 PRK11823 DNA repair protein Ra 27.3 27 0.00058 40.3 0.9 25 167-196 7-31 (446)
398 PLN03131 hypothetical protein; 27.1 54 0.0012 38.9 3.3 33 134-178 22-54 (705)
399 KOG2114|consensus 26.9 80 0.0017 38.8 4.7 55 93-147 793-852 (933)
400 PF14319 Zn_Tnp_IS91: Transpos 26.8 68 0.0015 29.8 3.3 61 133-207 40-110 (111)
401 PF10892 DUF2688: Protein of u 26.7 13 0.00029 30.1 -1.1 30 135-166 10-45 (60)
402 PF09538 FYDLN_acid: Protein o 26.5 34 0.00074 31.7 1.3 11 136-146 10-20 (108)
403 TIGR02300 FYDLN_acid conserved 26.3 37 0.0008 32.3 1.5 11 136-146 10-20 (129)
404 COG0333 RpmF Ribosomal protein 26.1 33 0.00072 28.1 1.0 23 136-177 28-50 (57)
405 KOG2807|consensus 25.6 28 0.00061 38.0 0.6 35 154-193 340-374 (378)
406 KOG4185|consensus 25.1 32 0.00068 37.2 0.9 53 136-198 4-56 (296)
407 COG1579 Zn-ribbon protein, pos 25.1 1.3E+02 0.0028 31.9 5.3 11 184-194 219-229 (239)
408 KOG0320|consensus 24.8 18 0.00038 36.3 -1.0 45 134-194 130-175 (187)
409 PF13240 zinc_ribbon_2: zinc-r 24.7 40 0.00087 22.3 1.0 9 138-146 2-10 (23)
410 PF14570 zf-RING_4: RING/Ubox 24.5 32 0.00069 27.2 0.6 45 138-194 1-45 (48)
411 PF14446 Prok-RING_1: Prokaryo 24.4 37 0.00081 27.5 1.0 31 135-173 5-35 (54)
412 PF01783 Ribosomal_L32p: Ribos 24.2 38 0.00083 27.5 1.0 24 135-177 26-49 (56)
413 KOG1814|consensus 24.0 1.6E+02 0.0034 33.5 6.0 69 91-177 323-396 (445)
414 PRK00398 rpoP DNA-directed RNA 24.0 32 0.00069 26.5 0.5 8 186-193 21-28 (46)
415 PRK14810 formamidopyrimidine-D 24.0 24 0.00052 37.9 -0.2 16 83-98 188-203 (272)
416 PF07975 C1_4: TFIIH C1-like d 23.8 24 0.00051 28.3 -0.2 49 138-193 2-50 (51)
417 smart00401 ZnF_GATA zinc finge 23.8 52 0.0011 26.2 1.7 14 136-149 4-17 (52)
418 PF04880 NUDE_C: NUDE protein, 23.8 71 0.0015 31.9 3.0 34 95-128 8-47 (166)
419 PRK14873 primosome assembly pr 23.7 27 0.00059 42.4 0.1 10 186-195 422-431 (665)
420 PRK04023 DNA polymerase II lar 23.6 39 0.00083 42.3 1.3 31 159-195 626-660 (1121)
421 TIGR00280 L37a ribosomal prote 23.4 27 0.0006 31.3 0.1 21 184-208 51-71 (91)
422 TIGR02976 phageshock_pspB phag 23.4 1.1E+02 0.0025 26.4 3.8 35 83-121 31-65 (75)
423 COG5151 SSL1 RNA polymerase II 23.3 25 0.00055 38.0 -0.2 53 134-193 361-417 (421)
424 KOG1829|consensus 23.3 33 0.00072 40.7 0.7 37 136-178 341-377 (580)
425 KOG2422|consensus 23.1 29 0.00062 40.9 0.1 7 171-177 212-218 (665)
426 KOG3507|consensus 23.0 55 0.0012 26.9 1.7 27 136-169 21-47 (62)
427 PF03833 PolC_DP2: DNA polymer 22.9 28 0.00061 42.7 0.0 32 159-196 655-690 (900)
428 cd01121 Sms Sms (bacterial rad 22.8 38 0.00082 38.2 1.0 23 168-195 1-23 (372)
429 PTZ00255 60S ribosomal protein 22.7 35 0.00075 30.6 0.6 21 184-208 52-72 (90)
430 cd00162 RING RING-finger (Real 22.6 20 0.00042 26.1 -0.9 43 137-194 1-43 (45)
431 PLN00162 transport protein sec 22.4 41 0.0009 41.5 1.3 35 159-198 53-87 (761)
432 smart00647 IBR In Between Ring 22.3 44 0.00095 26.9 1.0 38 136-177 19-58 (64)
433 TIGR00416 sms DNA repair prote 22.2 38 0.00083 39.2 1.0 23 167-194 7-29 (454)
434 PF13945 NST1: Salt tolerance 22.2 20 0.00043 36.5 -1.2 9 136-144 142-150 (190)
435 COG1198 PriA Primosomal protei 22.2 39 0.00085 41.3 1.1 15 88-102 405-419 (730)
436 KOG2775|consensus 21.8 39 0.00085 36.6 0.8 34 94-127 82-125 (397)
437 PF10409 PTEN_C2: C2 domain of 21.7 6.4E+02 0.014 23.5 9.1 92 485-582 4-98 (134)
438 PF07162 B9-C2: Ciliary basal 21.7 5E+02 0.011 25.6 8.6 84 489-578 6-101 (168)
439 PRK14811 formamidopyrimidine-D 21.6 32 0.00068 37.0 0.1 17 83-99 177-193 (269)
440 PHA00080 DksA-like zinc finger 21.6 1.1E+02 0.0024 26.2 3.4 29 136-167 32-60 (72)
441 smart00249 PHD PHD zinc finger 21.2 83 0.0018 23.0 2.4 46 138-192 2-47 (47)
442 KOG0904|consensus 21.1 2E+02 0.0044 35.8 6.5 92 628-722 343-455 (1076)
443 smart00154 ZnF_AN1 AN1-like Zi 20.9 52 0.0011 24.7 1.1 26 138-173 1-26 (39)
444 PRK13945 formamidopyrimidine-D 20.7 27 0.00059 37.7 -0.6 20 83-102 198-217 (282)
445 KOG0695|consensus 20.6 36 0.00077 37.6 0.2 36 136-178 142-177 (593)
446 cd00021 BBOX B-Box-type zinc f 20.6 39 0.00083 24.4 0.3 19 159-177 12-30 (39)
447 smart00109 C1 Protein kinase C 20.3 61 0.0013 24.4 1.5 35 135-177 11-45 (49)
448 COG1499 NMD3 NMD protein affec 20.3 47 0.001 37.2 1.0 11 136-146 7-17 (355)
449 PF06677 Auto_anti-p27: Sjogre 20.2 47 0.001 25.4 0.7 27 133-166 15-41 (41)
450 PF13831 PHD_2: PHD-finger; PD 20.0 26 0.00057 25.8 -0.6 32 160-193 5-36 (36)
No 1
>KOG1028|consensus
Probab=100.00 E-value=5.2e-47 Score=422.98 Aligned_cols=270 Identities=34% Similarity=0.547 Sum_probs=246.0
Q ss_pred CCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeee
Q psy7848 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546 (754)
Q Consensus 467 ~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I 546 (754)
.....|+|+|++.|+.....|.|+|++|++|+.+|..|.+||||+++|+|+.. .+++|++.++|+||+|||+|.|. |
T Consensus 149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~--~k~kT~v~r~tlnP~fnEtf~f~-v 225 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKK--GKFKTRVHRKTLNPVFNETFRFE-V 225 (421)
T ss_pred cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCC--CcceeeeeecCcCCccccceEee-c
Confidence 34789999999999999999999999999999999778899999999999874 88999999999999999999996 8
Q ss_pred eccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 547 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 547 ~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
...++...+|.|.|||+|+|++ ++||++.++|..+.......+|.++.. .... .....|+|+++|+|.|
T Consensus 226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~------~~~~----~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQP------SSTD----SEELAGELLLSLCYLP 295 (421)
T ss_pred CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeecccc------ccCC----cccccceEEEEEEeec
Confidence 8999999999999999999999 999999999999887766566666643 1110 0122289999999999
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
..|+|+|.|++|+||..++.++.+|||||+++..+..+. ++||.++++++||+|||+|.|.|+.+.|.+.+|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 999999999999999999999999999999999876443 9999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
|.++.+++||.+.|+..+.+++..||.+|+++|+.++++||.|..
T Consensus 376 d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS 420 (421)
T ss_pred ccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence 999999999999999999899999999999999999999999975
No 2
>KOG1013|consensus
Probab=100.00 E-value=4.2e-37 Score=319.13 Aligned_cols=282 Identities=37% Similarity=0.596 Sum_probs=261.0
Q ss_pred CCCCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEe
Q psy7848 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544 (754)
Q Consensus 465 ~~~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~ 544 (754)
.++...+|.++|.+.|+..+..+.++|..|++|.+++.++..|||++++++|......+++|++..+++||.|||+..+.
T Consensus 73 ~~~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~ 152 (362)
T KOG1013|consen 73 SDPATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYE 152 (362)
T ss_pred cchhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceec
Confidence 34447899999999999999999999999999999999999999999999997777788999999999999999999988
Q ss_pred eeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 545 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 545 ~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.|..++...+.+++.|+|.+.+.+ +++|+..|++..|...+.+.|..+|+...+... ....+.+++|+|.++|.|
T Consensus 153 ~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r----ad~~~~E~rg~i~isl~~ 228 (362)
T KOG1013|consen 153 GITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER----ADRDEDEERGAILISLAY 228 (362)
T ss_pred ccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc----ccccchhhccceeeeecc
Confidence 888888888999999999999998 999999999999999988888888876554221 122335899999999999
Q ss_pred cccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 624 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 624 ~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
......|.|.+++|.+|..+|.+|.+||||+.++.++.+++ ++||.+.++|+||+||+.|.|++.+.+|....+.|+||
T Consensus 229 ~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 229 SSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred CcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeec
Confidence 99999999999999999999999999999999999887776 99999999999999999999999999999999999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
|++.+++++++|++.+++...++...||..++.+++..++.||.|..+
T Consensus 309 d~~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred ccCCCcCccCCCcccccccccchhhcCccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999875
No 3
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=100.00 E-value=9e-35 Score=270.85 Aligned_cols=113 Identities=40% Similarity=0.808 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHH--HHhhhhccCC--CccccccccccccCCCccccccccCCCCcc
Q psy7848 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERV--DNMKRNVTGG--AAAAHACALCGDKFSPIFDRLGLFGAKCLV 161 (754)
Q Consensus 86 ~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l--~~~k~~~~~~--~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~ 161 (754)
.+||+||+++|++||+||++|+++|++||++|+++| +.+|+.+.++ ..++++|++|+++|| |++|++++
T Consensus 1 s~Lt~eE~~~I~~Vl~R~~~l~~~E~~Ri~kLk~~L~~e~~r~~~~~~~~~~~~~~C~~C~~~fg-------~l~~~~~~ 73 (118)
T PF02318_consen 1 SHLTEEEREIILQVLQRDEELRKKEEERIRKLKQELQKEKMRREALGNSQKYGERHCARCGKPFG-------FLFNRGRV 73 (118)
T ss_dssp TTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSTTHCCSB-TTTS-BCS-------CTSTTCEE
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhCCccc-------ccCCCCCc
Confidence 489999999999999999999999999999999999 6677777655 347799999999999 89999999
Q ss_pred ccccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccc
Q psy7848 162 CHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKV 209 (754)
Q Consensus 162 C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~ 209 (754)
|.+|+++||++|+++.+ ++..|+|++|++++++|++||+|||++
T Consensus 74 C~~C~~~VC~~C~~~~~----~~~~WlC~vC~k~rel~~~sG~Wf~~~ 117 (118)
T PF02318_consen 74 CVDCKHRVCKKCGVYSK----KEPIWLCKVCQKQRELKKKSGEWFYEE 117 (118)
T ss_dssp ETTTTEEEETTSEEETS----SSCCEEEHHHHHHHHHHHHCSHHHHCC
T ss_pred CCcCCccccCccCCcCC----CCCCEEChhhHHHHHHHHHhhhHHhcc
Confidence 99999999999999975 588999999999999999999999995
No 4
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.97 E-value=3.3e-31 Score=253.44 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=126.8
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC--CCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
.|+|+++|.|.|..++|.|.|++|+||..++. .+.+||||||+|.++..+ .++||+++++++||+|||+|.|.|+.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 39999999999999999999999999999983 345999999999987644 388999999999999999999999999
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
+|.+.+|.|+|||+|.+++|++||+|.|++.+.|++++||.+|+.+|+.++++||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 5
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.97 E-value=2.5e-30 Score=247.13 Aligned_cols=135 Identities=30% Similarity=0.402 Sum_probs=128.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|+++|.|.+..++|.|.|++|+||+.++.+|.+||||+|+|.+++.+. ++||+++++++||+|||+|.|.|+..++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 399999999999999999999999999999999999999999999876543 8899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
.+.+|.|+|||+|.++++++||++.|+..+.|++++||++|+.+|+.++++||.|.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 99999999999999999999999999999999999999999999999999999984
No 6
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.96 E-value=1.3e-29 Score=240.02 Aligned_cols=132 Identities=16% Similarity=0.265 Sum_probs=120.7
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCC-CCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTl-NP~wNEtF~F~V~~~dL 692 (754)
.+|+++|+|.|..++|+|.|++|+||++++..+.+||||||+|.+.+.+ .++||+++++|+ ||+|||+|.|+|+..+
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~- 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE- 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence 3799999999999999999999999999977778899999999977655 399999999996 6999999999998765
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCC-CCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
.+..|.|+|||++.+++|++||++.||.++ .+++.+||.+|+.+|+++|++||.|
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 468999999999999999999999999987 5678999999999999999999987
No 7
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.95 E-value=3.1e-28 Score=233.36 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=126.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
|+|+++|.|.+..++|.|.|++|+||+.++.+|.+|||||++|.|+.++ .++||+++++++||+|||+|.|.|+..++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7999999999999999999999999999999999999999999986554 37899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCc-hhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge-~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
...+|.|+|||++.++++++||++.|++...|. +..||++|+.+|+.++++||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 999999999999999999999999999998874 78999999999999999999984
No 8
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.95 E-value=1.3e-27 Score=228.67 Aligned_cols=133 Identities=24% Similarity=0.388 Sum_probs=123.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|+|+|.|.+..++|.|.|++|+||+.++ .+.+||||+|+|.++..+ .++||+++++++||+|||+|.|.|+.+++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4999999999999999999999999999998 778999999999876544 37899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecC--CCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~--s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...+|.|+|||++.++.+++||++.|+.. +.|++.+||++|+.+|+++|++||.|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 88999999999999999999999999964 57899999999999999999999998
No 9
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.95 E-value=2.5e-27 Score=225.99 Aligned_cols=135 Identities=36% Similarity=0.608 Sum_probs=126.0
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .+++|.++++++||+|||+|.|.+...++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 49999999999999999999999999999999999999999999764433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
....|.|+|||++.+++|++||.+.|++.+.+++..||++|+.+|+.++++||.|+
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~ 136 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence 77899999999999999999999999999999999999999999999999999986
No 10
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.94 E-value=4.7e-27 Score=224.21 Aligned_cols=133 Identities=30% Similarity=0.511 Sum_probs=122.5
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .++||+++++|+||+|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 8999999999999999999999999999999999999999998654332 378999999999999999999999888888
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCc-hhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge-~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++..+++++||++.|+..+.+. +..||+.|+.+|+.++++||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 88999999999999999999999999877554 7899999999999999999987
No 11
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.94 E-value=6.1e-27 Score=222.24 Aligned_cols=132 Identities=61% Similarity=0.999 Sum_probs=123.8
Q ss_pred eeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 616 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 616 eL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
+|+|+|.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++..+ .++||+++++++||+|||+|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 489999999999999999999999999999999999999999876544 3889999999999999999999998777778
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
..|.|+|||++.++++++||.+.|++.+.++...||++|+.+|++++++||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence 89999999999999999999999999999999999999999999999999987
No 12
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.94 E-value=1.3e-26 Score=221.18 Aligned_cols=135 Identities=40% Similarity=0.658 Sum_probs=125.5
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|.++|+|.+..+.|.|.|++|+||+.++.+|.+||||+|++.+.+.. .++||+++++++||+|||+|.|.++..++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 59999999999999999999999999999999999999999999765433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
.+..|.|+|||++.++++++||.+.|++.+.+.+.+||++|+..|+.++++||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence 77899999999999999999999999999999999999999999999999999984
No 13
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.94 E-value=1.8e-26 Score=219.47 Aligned_cols=133 Identities=32% Similarity=0.569 Sum_probs=124.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.+++.|.+..+.|.|.|++|++|++++.+|.+||||+|++.+.+.+ .+++|.++++++||+|||+|.|.+...++.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 8999999999999999999999999999999999999999999765433 388999999999999999999999777777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++.+++|++||.+.|++.+.+.+..||++|+.+|+.++++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence 778999999999999999999999999998999999999999999999999987
No 14
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.94 E-value=2.5e-26 Score=219.24 Aligned_cols=134 Identities=32% Similarity=0.524 Sum_probs=125.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|.|+|+|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .++||.++++++||+|||+|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 59999999999999999999999999999999999999999999766433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
....|.|+|||++.++++++||.+.|++.+.+++..||++|...|++++.+||.|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEec
Confidence 7789999999999999999999999999998899999999999999999999997
No 15
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.93 E-value=1.1e-25 Score=208.48 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=107.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
|+|+++|.|.+..+.|+|.|++|+||+ + .|.+||||||+|.++.++.+++|+++++|+||+|||+|.|.|+.+++.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 689999999999999999999999998 3 4669999999998765556889999999999999999999999999999
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhh
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM 733 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~l 733 (754)
.+|.|+|||+|.+++|++||++.|++.+ .+.+..||.+|
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999999999996 57888999875
No 16
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.92 E-value=1.4e-24 Score=205.36 Aligned_cols=133 Identities=38% Similarity=0.598 Sum_probs=124.2
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.|+|.|.+..+.|.|.|++|+||+..+.++.+||||++++.++.... +++|+++.++.||.|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 89999999999999999999999999999989999999999998765443 78999999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++.++.+++||.+.|++...+.+.+||++|+..|++++++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence 789999999999988999999999999998899999999999999999999987
No 17
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.91 E-value=2.9e-24 Score=211.39 Aligned_cols=135 Identities=35% Similarity=0.552 Sum_probs=122.4
Q ss_pred cceeEEeeeccc------------cccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccc
Q psy7848 614 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN 680 (754)
Q Consensus 614 ~GeL~VsL~y~p------------~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wN 680 (754)
+|+|.++|.|.| ..+.|.|.|++|+||+.++.+|.+||||+|++.++..+ .++||+++++|+||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 44899999999999999999999999999999876544 48999999999999999
Q ss_pred eeEEEEe-ecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC-------------CCchhhhHHhhhcCCCcceeeEEe
Q psy7848 681 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN 746 (754)
Q Consensus 681 EtF~F~V-~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-------------~ge~~~hW~~ll~~P~~~ie~Wh~ 746 (754)
|+|.|.+ ...++.+..|.|+|||++.+++|++||.+.|++.. .+++..||++|+.+|..+|++..+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999984 45677778999999999999999999999999885 488999999999999999999998
Q ss_pred ec
Q psy7848 747 LS 748 (754)
Q Consensus 747 L~ 748 (754)
|.
T Consensus 161 ~~ 162 (162)
T cd04020 161 LR 162 (162)
T ss_pred cC
Confidence 73
No 18
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.90 E-value=1.1e-23 Score=198.14 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=106.7
Q ss_pred eeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 616 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 616 eL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
+|+++|.|.+..+.|.|.|++|+||++++..|.+|||||++|+|+.++ .++||+++++++||+|||+|.|+|+.++|.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 689999999999999999999999999999999999999999998764 489999999999999999999999999999
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC---CchhhhHHh
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK---GDRLRHWVD 732 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~---ge~~~hW~~ 732 (754)
+.+|.|+|||++.++++++||+++|++... ++...+||+
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 999999999999999999999999998753 234555654
No 19
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=2.1e-23 Score=196.53 Aligned_cols=110 Identities=38% Similarity=0.610 Sum_probs=102.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
+|+|+|+|.|.+..+.|.|.|++|+||++++.. |.+||||+|++.|+... .++||+++++|+||+|||+|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999976 89999999999987654 3789999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|+|||++.++++++||++.|++...
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 88899999999999999999999999999864
No 20
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.89 E-value=4.1e-23 Score=194.62 Aligned_cols=123 Identities=33% Similarity=0.531 Sum_probs=109.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC-CCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|+++|.|.+..+.|.|.|++|+||++.+. +|.+||||+|++.|+..+ .++||+++++++||+|||+|.|.|...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 49999999999999999999999999998875 588999999999887654 3889999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
+....|.|+|||++.++++++||++.|++.+. .++..++.|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~------------~~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSW------------NFDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcc------------cccCCcccEEECc
Confidence 88889999999999999999999999999864 3445677888775
No 21
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.89 E-value=3.6e-23 Score=195.79 Aligned_cols=110 Identities=29% Similarity=0.438 Sum_probs=102.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|.|+|.|.+..+.|.|.|++|+||++++.. |.+||||+++|.|+.+.. ++||+++++++||+|||+|.|.|...+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 499999999999999999999999999999875 999999999999886554 889999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|.|||++.++++++||++.|++...
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW 112 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence 88899999999999999999999999999863
No 22
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.88 E-value=1.7e-22 Score=187.42 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=101.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|+|.|++..+.|+|+|++|+||+ . .|.+||||+++|+++.. ..+++|+++++|+||+|||+|.| .|+.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F-~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF-PLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE-eCCHHHh
Confidence 689999999999999999999999998 3 46699999999987543 36789999999999999999999 4999999
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceE
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~ 590 (754)
...+|.|+|||+|++++ ++||++.+++.++........|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence 99999999999999999 9999999999987555444444
No 23
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.88 E-value=7.4e-23 Score=192.05 Aligned_cols=107 Identities=32% Similarity=0.538 Sum_probs=98.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
.|+|.++|.|. .+.|.|.|++|+||++++ +|.+||||+|+|.++..+ .++||+++++++||+|||+|.|.+ +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 38999999999 689999999999999999 899999999999987654 389999999999999999999997 6667
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|+|||++.+++|++||++.|++...
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 109 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL 109 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEecccc
Confidence 88899999999999999999999999999864
No 24
>KOG2059|consensus
Probab=99.88 E-value=2e-22 Score=225.83 Aligned_cols=236 Identities=25% Similarity=0.358 Sum_probs=191.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
...|.|.|.+|+||++.+..|..||||.|.+. .....||.++.+++.|.|.|+|.|+ |+.. ...|.|.|||.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~ 75 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDR 75 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec----chhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEecc
Confidence 46799999999999999999999999999996 3468899999999999999999984 5544 58899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc--ccceeecccccccc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK--KRALIVNLIKCTNL 640 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~--~g~L~V~V~~A~nL 640 (754)
| +++ +.||.+.|.-.+|......+.|+.|.. +++ +.+..|+|++.+.+.+. ...+...++.++++
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~---VD~--------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~ 143 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP---VDP--------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQG 143 (800)
T ss_pred c-cccccccceeeeeHHHHhhCCCCccceeccc---cCC--------ChhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence 9 677 999999999999887777777777653 222 25789999999999765 35677888888888
Q ss_pred ccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-------------ccCCCeEEEEEEE-ccC
Q psy7848 641 IPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQTLVITVWD-KDY 706 (754)
Q Consensus 641 ~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-------------dL~~~~L~ItV~D-~d~ 706 (754)
.+.+.++ +|||+.+.+.........+|.++++|.||.|||.|.|.+... +-....|.+.+|| .+.
T Consensus 144 ~P~~~~~-~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~ 222 (800)
T KOG2059|consen 144 LPIINGQ-CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL 222 (800)
T ss_pred CceeCCC-CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh
Confidence 7775554 999999998654333468999999999999999999998644 1123568889998 566
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
+..++|+|.+.|++... | -....+.|+.|+|+|-
T Consensus 223 ~~~~~FlGevrv~v~~~------~------~~s~p~~W~~Lqp~~~ 256 (800)
T KOG2059|consen 223 VINDVFLGEVRVPVDVL------R------QKSSPAAWYYLQPRPN 256 (800)
T ss_pred hhhhhhceeEEeehhhh------h------hccCccceEEEecCCC
Confidence 77799999999998742 2 2345679999999875
No 25
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.87 E-value=6e-22 Score=191.15 Aligned_cols=124 Identities=24% Similarity=0.347 Sum_probs=106.2
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
....|+|.++|.| ..+.|.|.|++|+||++++ .+|.+|||||++|.++..+ .++||+++++|+||+|||+|.|.|.
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4568999999999 4689999999999999874 6789999999999987654 3899999999999999999999996
Q ss_pred cCccCCCeEEEEEE-EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 689 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 689 ~~dL~~~~L~ItV~-D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
+.+..|.|+|| |++.+.+|+|||.+.|+|+.. ..+.....||.|.+.-
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l------------~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL------------DLSNLVIGWYKLFPTS 140 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc------------cCCCCceeEEecCCcc
Confidence 67889999999 688888999999999999864 2234566788777653
No 26
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.87 E-value=6.3e-22 Score=186.43 Aligned_cols=122 Identities=29% Similarity=0.453 Sum_probs=108.7
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
+|+|+|+|.|+...+.|.|+|++|+||+.++.. |.+||||+++++|+.....+++|+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence 599999999999999999999999999999976 89999999999987755567899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|.++...+....|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 7888899999999999888 9999999999999776555555544
No 27
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.87 E-value=1.3e-21 Score=183.69 Aligned_cols=119 Identities=29% Similarity=0.492 Sum_probs=106.2
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|+|.|+ .+.|.|+|++|+||+.++ .+.+||||+|+++|+.....+.+|++++++.||+|||+|.|..++..++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 799999999999999999 8999999999999876556789999999999999999999965477778
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|+|.|||+|.+++ +|||++.|+|.++........|+.|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 88999999999999987 9999999999999876555555544
No 28
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=3.3e-21 Score=182.49 Aligned_cols=113 Identities=27% Similarity=0.419 Sum_probs=104.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.|+|+|+|.|+...+.|.|+|++|+||+.++.. |.+||||+++++|+.....++||++++++.||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHH
Confidence 499999999999999999999999999999975 99999999999997766678899999999999999999995 7888
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
++....|+|.|||++.+++ +|||++.|+|.++...
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccC
Confidence 8888999999999999888 9999999999998654
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.86 E-value=4.7e-21 Score=180.59 Aligned_cols=122 Identities=30% Similarity=0.508 Sum_probs=108.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.|+|+|++.|+...+.|.|+|++|+||+..+. .+.+||||+|++.|+.....++||+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHH
Confidence 49999999999999999999999999999875 588999999999987655567899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|..+...+....|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 7878899999999999888 9999999999999887666666654
No 30
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=2.6e-21 Score=181.41 Aligned_cols=109 Identities=33% Similarity=0.511 Sum_probs=101.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
+|+|+++|.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++. ..++||+++++++||+|||+|.|.+...++.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 699999999999999999999999999999999999999999997653 3478999999999999999999999887887
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
...|.|+|||++.++.|++||++.|++...
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEV 110 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccc
Confidence 889999999999999999999999999864
No 31
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.85 E-value=2.9e-21 Score=181.73 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=110.7
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEE-eecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~-V~~~dL 692 (754)
.|+|.+++.|.+..++|.|+|++|+||++++.+|.+||||++++.++. +.++||+++++ +||+|||+|.|. +...++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 699999999999999999999999999999999999999999998764 45889999887 999999999998 888888
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.+..|.|+|||++.++++++||.+.|+++.. .++.....|++|+|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l------------~~~~~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQL------------NLEGETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEecccc------------CCCCCceEEEeCCC
Confidence 9999999999999999999999999999864 34566888998875
No 32
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.85 E-value=1.8e-21 Score=182.36 Aligned_cols=119 Identities=37% Similarity=0.639 Sum_probs=105.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
.|+|.|++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..+++|+++++++||+|||+|.|.+...++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 699999999999999999999999999999999999999999997653 3478999999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC--CchhhhHHhh
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM 733 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~--ge~~~hW~~l 733 (754)
...|.|.|||++.++.+++||.+.|++... +....+|++|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 789999999999999999999999999863 4455555554
No 33
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.85 E-value=6.1e-21 Score=179.57 Aligned_cols=111 Identities=24% Similarity=0.386 Sum_probs=103.4
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC-ceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~-~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
+|+|+|.|++..+.|.|+|++|+||+.++..+.+||||+++|+|+... ..+++|+++++++||+|||+|.|. |+.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence 699999999999999999999999999998899999999999997754 368899999999999999999995 899999
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
...+|+|+|||++.+++ ++||++.|+|.++...
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 99999999999999888 9999999999998654
No 34
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.85 E-value=8.9e-21 Score=178.43 Aligned_cols=121 Identities=28% Similarity=0.406 Sum_probs=110.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++..+.+||||++.++|++. .+.+|+++++ .||+|||+|.|..++..+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence 7999999999999999999999999999999889999999999988654 6789999887 999999999996688888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+...+|+|.|||++.+++ ++||++.|+|.++..+.....|++|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 889999999999999987 99999999999998877777777664
No 35
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.85 E-value=7.5e-21 Score=179.94 Aligned_cols=126 Identities=29% Similarity=0.484 Sum_probs=109.2
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEE-EeecC
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKIT 690 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F-~V~~~ 690 (754)
.+|+|.+++.|.+..+.|.|.|++|+||+.++.. |.+||||+|++.++. ..++||+++++++||+|||+|.| .+...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 3799999999999999999999999999999876 899999999997653 34779999999999999999999 57767
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
++....|.|+|||+|.+++|++||++.|++.... + .-+.+.+.|..|||
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--------~--~~~~~~~~~~~~~~ 128 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD--------L--LNEGELLVSREIQP 128 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccC--------C--CCCceEEEEEeccC
Confidence 7777899999999999999999999999998642 1 11355778888875
No 36
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.85 E-value=1.5e-20 Score=177.96 Aligned_cols=121 Identities=34% Similarity=0.550 Sum_probs=106.6
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++.. +.+||||+|+++++.. .+.||+++++++||+|||+|.|+.++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 799999999999999999999999999999876 8999999999987543 5789999999999999999999667777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC--CccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~--~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|.++... .....|+++
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 7777889999999999887 9999999999998655 344455554
No 37
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.85 E-value=4.1e-21 Score=180.51 Aligned_cols=111 Identities=36% Similarity=0.610 Sum_probs=101.6
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
..|+|.|+|.|.+..+.|.|.|++|+||+.++.++.+||||+|++.++... .++||+++++++||+|||+|.|.+...+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 369999999999999999999999999999999999999999999876543 4899999999999999999999998878
Q ss_pred cCCCeEEEEEEEccCC--CCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYG--KSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~--~~ddfLG~v~L~l~s~ 723 (754)
+....|.|.|||++.+ +.+++||.+.|++...
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l 114 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccc
Confidence 8889999999999975 6899999999999863
No 38
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=5.1e-21 Score=178.88 Aligned_cols=117 Identities=25% Similarity=0.490 Sum_probs=99.5
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.+++.| ..+.|.|.|++|+||++++ .|.+||||+++|.|+..+. ++||+++++++||+|||+|.|.+...++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 789999998 5789999999999999998 8899999999999876544 88999999999999999999999876664
Q ss_pred CCeEEEEEEEccCCC-CCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGK-SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~-~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
..|.|+|||++.+. .+++||++.|++.+. . .+..+.+||.|
T Consensus 78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~----------~--~~~~~~~Wy~l 119 (119)
T cd08685 78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSI----------V--NQKEISGWYYL 119 (119)
T ss_pred -CEEEEEEECCCCCcCCCEEEEEEEecHHHh----------c--cCccccceEeC
Confidence 57999999999875 478999999999753 2 24456677765
No 39
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.84 E-value=5.2e-21 Score=178.66 Aligned_cols=109 Identities=37% Similarity=0.578 Sum_probs=100.3
Q ss_pred ceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
|+|.++|.|.+..+.|.|.|++|+||+.++ ..|.+||||+|++.++... .+++|+++++++||+|||+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 899999999999999999999999999998 7889999999999876543 37899999999999999999999987778
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
....|.|.|||++.++++++||.+.|++...
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 7889999999999999999999999999864
No 40
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.83 E-value=2.7e-20 Score=174.62 Aligned_cols=124 Identities=32% Similarity=0.474 Sum_probs=107.1
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
+.|+|++++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..+++|+++++++||+|||+|.|.+ +...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 1 NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred CccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 4699999999999999999999999999999999999999999997653 3478999999999999999999984 4445
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
+....|.|+|||++.++.+++||.+.|++.... .+.....|+.|+|
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~ 125 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP 125 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence 666789999999999999999999999998632 2445677887765
No 41
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=5.5e-20 Score=177.53 Aligned_cols=120 Identities=25% Similarity=0.338 Sum_probs=102.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
..+|+|+|+|.| ..+.|.|+|++|+||+.++ ..|.+||||+++|++++....+.||+++++|+||+|||+|.|. +.
T Consensus 15 ~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~ 91 (146)
T cd04028 15 PSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS 91 (146)
T ss_pred CCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec
Confidence 469999999999 4789999999999999875 6788999999999997765678999999999999999999995 44
Q ss_pred ccccCcceEEEEEe-eCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 548 ETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~-D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|+|| |++.+.+ +|||++.|+|.++..+.....|+.|.
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~ 137 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLF 137 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecC
Confidence 56789999999 6888777 99999999999997665554555543
No 42
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.83 E-value=1.1e-20 Score=176.99 Aligned_cols=109 Identities=33% Similarity=0.590 Sum_probs=99.3
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
.|+|.++|.|.+..+.|.|.|++|+||+.++.++.+||||+|++.++... .++||+++++++||+|||+|.|.+ ...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 59999999999999999999999999999999999999999999875443 488999999999999999999985 4456
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+....|.|+|||++.++.+++||.+.|++..
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 6678999999999999999999999999986
No 43
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.83 E-value=5.1e-20 Score=172.60 Aligned_cols=122 Identities=34% Similarity=0.556 Sum_probs=107.9
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|.|++.|+...+.|.|+|++|+||+.++..+.+||||++++.++.. ..++|++++++.||+|||.|.|. +...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~-i~~~ 77 (124)
T cd08385 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFK-VPYS 77 (124)
T ss_pred CccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEe-CCHH
Confidence 37999999999999999999999999999999889999999999987543 57899999999999999999994 6666
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
++....|.|.|||+|.++. ++||++.|+|.++..+.....|+.|+
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred HhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 6667899999999999887 99999999999987766666666653
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=5e-20 Score=172.76 Aligned_cols=121 Identities=30% Similarity=0.574 Sum_probs=108.3
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|+|++.|++..+.|.|+|++|+||+.++..+.+||||+|+++++.. ..++|++++++.||+|||+|.|. ++..
T Consensus 1 ~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~-v~~~ 77 (124)
T cd08387 1 TRGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFE-VPPQ 77 (124)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEe-CCHH
Confidence 37999999999999999999999999999999999999999999986543 56899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||++.+++ ++||++.|+|.++..+.....|+.|
T Consensus 78 ~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 78 ELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 7777899999999999887 9999999999999877666666655
No 45
>KOG1013|consensus
Probab=99.82 E-value=1.4e-20 Score=196.50 Aligned_cols=258 Identities=21% Similarity=0.192 Sum_probs=220.9
Q ss_pred CCcccchhhccccccCceeecccccccCCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccc
Q psy7848 56 LSDVSLFGFVHRLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAA 135 (754)
Q Consensus 56 ~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~ 135 (754)
+.|++ +|+ .|+++|++++.+.+++.-..+|+..+- |+|+++++.++..++.+|..+.++|..||.+.++++.
T Consensus 70 ~~d~~-~at--~lg~~~~~~~y~~~~~~~~~tl~~a~~---lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~l-- 141 (362)
T KOG1013|consen 70 SYDSD-PAT--TLGALEFELLYDSESRMLDTTLDRAKG---LKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTL-- 141 (362)
T ss_pred ccccc-hhh--hccchhhhhhhhhhhhhcceeechhcc---cchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCc--
Confidence 56777 666 999999999998888877788988776 9999999999999999999999999999999999888
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCC-ceeeccchhhhhhhhhcccccccccCCCc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN-IWLCKICAETREMWKKSNAWFFKVSGLPY 214 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~-~WlC~vC~~~rel~~~sG~Wf~~~~~~~~ 214 (754)
+.|..|..+++ ++......|.+|++.||.+|...++ .+..+. .|+|++|..++ +.++.||++
T Consensus 142 N~~w~etev~~-------~i~~~~~~~K~~Rk~vcdn~~~~~~-~sqGq~r~~lkKl~p~q~---k~f~~cl~~------ 204 (362)
T KOG1013|consen 142 NPEWNETEVYE-------GITDDDTHLKVLRKVVCDNDKKTHN-ESQGQSRVSLKKLKPLQR---KSFNICLEK------ 204 (362)
T ss_pred Ccceeccceec-------ccccchhhhhhhheeeccCcccccc-cCcccchhhhhccChhhc---chhhhhhhc------
Confidence 99999999999 8888899999999999999999875 233333 59999999999 899999999
Q ss_pred ccccccccccccCCCcccCCcccccCCCCcccCCCCCCchhhccccCCccCCCCCCccccccccCCCCCCCCCChhHHHH
Q psy7848 215 ECLDHYTTEAVSGLPYECLDHYTTEAGLPKYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEEDAR 294 (754)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (754)
++| +.+. +
T Consensus 205 --------------------------~lp----~~ra--------------------------------d---------- 212 (362)
T KOG1013|consen 205 --------------------------SLP----SERA--------------------------------D---------- 212 (362)
T ss_pred --------------------------cCC----cccc--------------------------------c----------
Confidence 232 0000 0
Q ss_pred HhhccccccccCCCCCCCccccccCCCCCCCcchhhhhhcccccCCCCcccccccccccccccccccCCCCCcccccccc
Q psy7848 295 LARSKQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTSIANVSDTEQPIVIPIRK 374 (754)
Q Consensus 295 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (754)
T Consensus 213 -------------------------------------------------------------------------------- 212 (362)
T KOG1013|consen 213 -------------------------------------------------------------------------------- 212 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcCCCCCcccCCCCCcccccCCCccCCCCCCCCCCCCCCcCCCCCCccCCCCCccccc
Q psy7848 375 IASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGV 454 (754)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 454 (754)
| + .
T Consensus 213 ---------------------------------------~----------------~---------------------~- 215 (362)
T KOG1013|consen 213 ---------------------------------------R----------------D---------------------E- 215 (362)
T ss_pred ---------------------------------------c----------------c---------------------c-
Confidence 0 0 0
Q ss_pred ccCcccccccCCCCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCC
Q psy7848 455 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 534 (754)
Q Consensus 455 ~s~~~~~~e~~~~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlN 534 (754)
.+.+|.|.+++.|+.....|.|++++|.+|..+|.++-+||||++++.|+.....+.+|.+.++|+|
T Consensus 216 -------------~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~ 282 (362)
T KOG1013|consen 216 -------------DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLN 282 (362)
T ss_pred -------------hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCC
Confidence 0236778888888888888999999999999999999999999999998887778999999999999
Q ss_pred CeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 535 P~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
|+||+.|.| .|...+|....+.|.|||++..+. +++|-+..-+-..
T Consensus 283 p~fd~~~~~-~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 283 PEFDEEFFY-DIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred ccccccccc-cCCccchhcceEEEeecccCCCcCccCCCccccccccc
Confidence 999999987 699999999999999999999866 9999877655443
No 46
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=9.2e-20 Score=170.70 Aligned_cols=122 Identities=30% Similarity=0.463 Sum_probs=104.7
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|+|.|+...+.|.|+|++|+||+.++..+.+||||+|++.++.....+++|++++++.||+|||+|.|..+...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 79999999999999999999999999999998899999999999875544568899999999999999999996556566
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++.++. ++||++.++|.+.... ....|++|
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc-CCcceEEC
Confidence 667899999999999887 9999999999983322 33344444
No 47
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.82 E-value=1e-19 Score=169.92 Aligned_cols=120 Identities=28% Similarity=0.513 Sum_probs=105.6
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|+|++.|+...+.|.|+|++|+||+.++ ..+.+||||+|++.++.....+.+|++++++.||+|||+|.|. +...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence 899999999999999999999999999998 7789999999999876554467899999999999999999995 77777
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEee
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN 592 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~ 592 (754)
+....|.|.|||++.+++ ++||++.++|.++..+.....|++
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 777899999999999887 999999999999976555544543
No 48
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.82 E-value=5.1e-20 Score=176.33 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=100.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
.|+|.|+|.|.+..+.|.|+|++|+||+.+|. .+.+||||+|+|+++.....+.||+++++++||+|||.|.| .|+.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F-~v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF-ELPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEE-ECCH
Confidence 49999999999999999999999999999983 35589999999998766667889999999999999999999 4888
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
+++...+|.|+|||+|.+++ ++||++.|++..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 89989999999999999998 999999999975
No 49
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.82 E-value=5.6e-20 Score=175.81 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=101.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
.|+|.|+|.|++..+.|.|+|++|+||+.++..|.+||||+|+|+|++....+.+|+++++++||+|||+|.|. |+..+
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHH
Confidence 49999999999999999999999999999998999999999999987655567899999999999999999994 88888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|+|+|||+|.+++ ++||++.|.....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence 989999999999999888 9999999987643
No 50
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=1.2e-19 Score=170.16 Aligned_cols=122 Identities=34% Similarity=0.572 Sum_probs=108.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++..+.+||||+++++++.. ...+|++++++.||+|||+|.|..++.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence 6999999999999999999999999999999889999999999976543 56899999999999999999996555666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|+|||++.+++ +|||++.|+|.++........|..|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 666889999999999887 99999999999998877777777663
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.82 E-value=1.7e-19 Score=169.49 Aligned_cols=122 Identities=30% Similarity=0.466 Sum_probs=107.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
.|+|+|+|.|+...+.|.|+|++|+||+..+..+.+||||+|+++++.....+++|++++++.||+|||+|.|. +...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence 79999999999999999999999999999998899999999999886655678999999999999999999995 77677
Q ss_pred cCcceEEEEEeeCCCC--CC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~--g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||.+.+ ++ ++||++.|+|.++........|+.|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 7778999999999975 45 9999999999999776555555544
No 52
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=9.8e-20 Score=170.17 Aligned_cols=108 Identities=31% Similarity=0.536 Sum_probs=99.2
Q ss_pred ceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.|+|.|.+..+.|.|.|++|+||+.++ .++.+||||+|++.++. ...++|+++++++||+|||+|.|.+...++.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 899999999999999999999999999998 68899999999997654 3467899999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
...|.|.|||++..+.+++||.+.|++...
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l 109 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccce
Confidence 789999999999988999999999999863
No 53
>KOG0696|consensus
Probab=99.81 E-value=3.1e-20 Score=198.50 Aligned_cols=129 Identities=34% Similarity=0.626 Sum_probs=114.8
Q ss_pred ccccccccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeE
Q psy7848 605 VWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEF 683 (754)
Q Consensus 605 ~~~~~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF 683 (754)
..+.+..+.+|+|.+.+.. ....|.|.|.+|+||.+||.||.|||||++.|.|+.... ++||++++.|+||+|||+|
T Consensus 159 lCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtf 236 (683)
T KOG0696|consen 159 LCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETF 236 (683)
T ss_pred ccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccccee
Confidence 4456668899999988876 667899999999999999999999999999999987654 9999999999999999999
Q ss_pred EEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC-CCchhhhHHhhhcC
Q psy7848 684 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKY 736 (754)
Q Consensus 684 ~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~ 736 (754)
+|.+.+.|. +..|.|+|||||..+.|||||...++++. .-+..+-||++++.
T Consensus 237 tf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 237 TFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ 289 (683)
T ss_pred EEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence 999988775 58999999999999999999999999887 34567789999975
No 54
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=3e-19 Score=166.94 Aligned_cols=114 Identities=26% Similarity=0.418 Sum_probs=97.8
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|++.| ..+.|.|+|++|+||+.++ .|.+||||+++|+|+.....+.||+++.++.||+|||+|.|. +...++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHh
Confidence 789999998 6799999999999999998 889999999999997766678899999999999999999994 666655
Q ss_pred CcceEEEEEeeCCCCC-C-ccceeeeecCcccCCCCccceE
Q psy7848 552 SLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g-~-dfLGev~I~L~~L~~~~~~~~~ 590 (754)
. ..|.|+|||++... + +|||++.|+|.++..+....-|
T Consensus 77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~W 116 (119)
T cd08685 77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGW 116 (119)
T ss_pred C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccce
Confidence 4 57899999999875 4 8999999999999755443333
No 55
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.80 E-value=4.2e-19 Score=165.90 Aligned_cols=120 Identities=30% Similarity=0.450 Sum_probs=107.8
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|.|++.|+...+.|.|+|++|+||+.++ ..+.+||||+|++.++.. ...+|+++.+++||+|||.|.|. ++..+
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~-i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQ-VSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEE-cCHHH
Confidence 899999999999999999999999999998 688999999999987553 46789999999999999999995 77666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|.|||++..++ ++||++.|+|.++........|++|+
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 666899999999999887 99999999999998887777887774
No 56
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.80 E-value=4.8e-19 Score=174.38 Aligned_cols=123 Identities=30% Similarity=0.440 Sum_probs=107.1
Q ss_pred eeEEEEEEEEEC------------cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeec
Q psy7848 471 LGSIELTVTYDS------------TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 538 (754)
Q Consensus 471 ~G~I~~sl~Yd~------------~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~Wn 538 (754)
+|+|.|+|.|++ ..+.|.|+|++|+||+..+..+.+||||+|++.++.....+++|++++++.||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 45899999999999999998899999999999886656678999999999999999
Q ss_pred eeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 539 E~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
|+|.|..+...++....|.|.|||++.+++ +|||++.|++.++........|+.+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 999996566666777889999999999987 9999999999998765544444443
No 57
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=6e-19 Score=165.03 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=89.2
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecC--C-CCcceeeeeeecCCCCCccceeEEEEeecC-ccCCCeEEEEEEEc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--D-LHKRKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK 704 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~--~-~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-dL~~~~L~ItV~D~ 704 (754)
+|+|.|++|+||+..+ .|.+||||+|+|.+ . ..+++++|+++.+|+||+|||+|.|.|... ++....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 58999999999863 1 122378999999999999999999999754 45668899999999
Q ss_pred cCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
+.+++|++||++.|++.+. . ++.....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~----------~--~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDI----------A--QAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHC----------c--CCCcEEEEEECcC
Confidence 9888899999999998853 2 3445677887754
No 58
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.79 E-value=9.3e-19 Score=163.91 Aligned_cols=123 Identities=49% Similarity=0.908 Sum_probs=108.3
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|++..+.|.|+|++|++|+..+..+.+||||++++.++.......+|++++++.||.|||.|.|..+...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 59999999999999999999999999999998899999999999875544568899999999999999999995455566
Q ss_pred cCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++.+++++||++.|+|.+|..+..++++++|
T Consensus 81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 6678999999999988449999999999999988777776543
No 59
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.78 E-value=8.2e-19 Score=165.17 Aligned_cols=107 Identities=24% Similarity=0.359 Sum_probs=90.8
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec---CccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~---~dL~~~~L~ItV~D~d~ 706 (754)
+.|.|++|+||+.++.+|.+||||+|++ +..++||+++++++||+|||+|.|.+.. .++....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 5799999999999999999999999999 3458899999999999999999999865 23567899999999999
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
+++|++||.+.|++.. +...++..+..||+|.++
T Consensus 77 ~~~d~~iG~~~i~l~~----------l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 77 LGLDKFLGQVSIPLND----------LDEDKGRRRTRWFKLESK 110 (126)
T ss_pred cCCCceeEEEEEEHHH----------hhccCCCcccEEEECcCC
Confidence 9899999999999974 333445566777777654
No 60
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.78 E-value=5.3e-19 Score=169.28 Aligned_cols=121 Identities=25% Similarity=0.405 Sum_probs=105.0
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|+|.|++..+.|.|+|++|+||+..+ .+.+||||+|+|.++.....+.+|++++++.||+|||.|.| .|+.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f-~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSF-KVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEE-ECCHHH
Confidence 5999999999999999999999999999998 78899999999988654445779999999999999999999 488888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++..++ ++||++.|.......+....+|..+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 888999999999998887 9999999997766554444555443
No 61
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.77 E-value=1.4e-18 Score=165.80 Aligned_cols=109 Identities=30% Similarity=0.469 Sum_probs=99.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|+...+.|.|+|++|+||+.+|..|.+||||+|++.++.....+.+|+++++++||.|||+|.|. +...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence 59999999999999999999999999999999999999999999876544457899999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
+....|.|.|||+|.+++ ++||++.|++..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 667889999999999988 999999999997
No 62
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.77 E-value=2.7e-18 Score=164.70 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=99.9
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|.|+|.|+...+.|.|+|++|+||+.++..|.+||||+++++|+.. ...+.+|++++++.||+|||+|.|. |+.++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence 789999999999999999999999999999999999999999998543 2356799999999999999999995 88888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
+...+|.|.|||++.+++ ++||++.|++...-
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 888999999999999888 99999999988543
No 63
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=1.6e-18 Score=165.34 Aligned_cols=110 Identities=32% Similarity=0.513 Sum_probs=98.9
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|+|.|++..+.|.|+|++|+||+.++..+.+||||+|++.+........+|+++.++.||+|||+|.|. ++.++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence 59999999999999999999999999999998999999999999765444457899999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|.|+|||++.+++ ++||++.|++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 666789999999999987 9999999999876
No 64
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.76 E-value=2.5e-18 Score=163.57 Aligned_cols=109 Identities=36% Similarity=0.485 Sum_probs=98.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCC---cceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~---k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
.|+|.|++.|.+..+.|.|.|++|++|+.++.+|.+||||+|++.+... ..++||+++++|+||+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999999999999999999999999999999999999976542 3489999999999999999999998653
Q ss_pred c--cCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 691 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 691 d--L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+ +....|.|+|||++.++++++||.+.|++..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~ 115 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLND 115 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHH
Confidence 2 3467999999999999999999999999875
No 65
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.76 E-value=3.7e-18 Score=162.44 Aligned_cols=108 Identities=33% Similarity=0.538 Sum_probs=97.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|++.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+.+......+|+++.+++||+|||+|.|. +..+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence 8999999999999999999999999999999999999999999865544467899999999999999999994 666666
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
....|.|+|||++.++. +|||++.|++..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 66789999999999987 999999999873
No 66
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.76 E-value=4.4e-18 Score=162.31 Aligned_cols=110 Identities=33% Similarity=0.498 Sum_probs=99.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+........+|+++++++||+|||+|.|. ++..+
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHH
Confidence 59999999999999999999999999999999999999999999865544467889999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|.|+|||++.++. +|||++.|++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 766789999999999987 9999999999864
No 67
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=7.8e-18 Score=157.53 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=93.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeC--CCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp--~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|+|+|++|+||+..+ .|.+||||+|+|.+ ......+++|+++.+|+||+|||+|.|.......+....|+|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999987 49999999999953 11233578999999999999999999964334456678899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCC
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPV 599 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l 599 (754)
|..+. ++||++.|+|.++........|++|....++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 98876 9999999999999988888888888764433
No 68
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.75 E-value=5.9e-18 Score=160.66 Aligned_cols=107 Identities=33% Similarity=0.532 Sum_probs=97.3
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 552 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~ 552 (754)
+|+|+|.|+...+.|.|+|++|+||+.+|..+.+||||+|++.++.......+|+++.+++||+|||+|.|. +...++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence 489999999999999999999999999998899999999999886555567899999999999999999994 6666677
Q ss_pred cceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 553 LQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 553 ~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
...|.|.|||+|..+. ++||++.|++..
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 7899999999999887 999999999985
No 69
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=5.4e-18 Score=164.34 Aligned_cols=94 Identities=29% Similarity=0.465 Sum_probs=81.9
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee-------------cCccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK 694 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~-------------~~dL~~ 694 (754)
+|.|.|++|+||++ .+|.+||||+|++.+...+ .++||+++++|+||+|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999988 6789999999999875444 3889999999999999999999984 335556
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCCCC
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNSKG 724 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s~g 724 (754)
..|.|.|||++.++.|+|||++.|++....
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 789999999999889999999999998643
No 70
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=5.3e-18 Score=158.77 Aligned_cols=115 Identities=32% Similarity=0.466 Sum_probs=100.3
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEE-eecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~-V~~~d 691 (754)
.|+|.++|.|.+..+.|.|.|++|++|+..+..+.+||||++++.++..+ .+++|+++++++||+|||+|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 49999999999999999999999999999998899999999999766543 48999999999999999999996 54456
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhh
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRH 729 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~h 729 (754)
+....|.|+|||++.+ .+++||.+.+++........+
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 6678999999999988 899999999999875443333
No 71
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.74 E-value=3.7e-17 Score=192.77 Aligned_cols=232 Identities=31% Similarity=0.435 Sum_probs=169.7
Q ss_pred EECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 480 Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
|+..-|.++|+|..|.+|......+.+|||+++.+. +..++||-....++||+||+......++. .+.|.+.
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~k~rti~~~~~~npiw~~i~Yv~v~sk----~~r~~l~ 777 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLVKYRTIYGSSTLNPIWNEILYVPVTSK----NQRLTLE 777 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEec----ceeEEEEecccCccccceeeeEEEEecCC----ccEEeee
Confidence 566669999999999999977788999999999996 35788999999999999999886543332 2668899
Q ss_pred EeeCCCCCC-ccceeeeecCcccCCCCccce---E---------eec---------------cc---CCCC---------
Q psy7848 560 VLDDDKYGH-DFLGEARFPLNRLRPHISRDL---C---------LNL---------------CK---HYPV--------- 599 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I~L~~L~~~~~~~~---~---------~~L---------------~~---~~~l--------- 599 (754)
.+|++..++ .+||++.|++.++........ . +.+ .. .+.+
T Consensus 778 ~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~ 857 (1227)
T COG5038 778 CMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKV 857 (1227)
T ss_pred eecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhh
Confidence 999999998 999999999988755111000 0 000 00 0000
Q ss_pred --------------Cccccccc-c---------------c-------------cccccc---------------------
Q psy7848 600 --------------PREEEVWG-E---------------E-------------ECWQHG--------------------- 615 (754)
Q Consensus 600 --------------~~~~~~~~-~---------------~-------------~~~~~G--------------------- 615 (754)
+.+ ..+. + + -....|
T Consensus 858 ~~e~~~~~~~~~~l~ek-~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f 936 (1227)
T COG5038 858 SSEKRKSEKRKSALDEK-TISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIF 936 (1227)
T ss_pred hhHHHHhhhhhcccCcc-ccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEE
Confidence 000 0000 0 0 000001
Q ss_pred -------------------------------------------------------------------------------e
Q psy7848 616 -------------------------------------------------------------------------------K 616 (754)
Q Consensus 616 -------------------------------------------------------------------------------e 616 (754)
.
T Consensus 937 ~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~ 1016 (1227)
T COG5038 937 FDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAK 1016 (1227)
T ss_pred ecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCce
Confidence 1
Q ss_pred eEEeeecccc------------ccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEE
Q psy7848 617 IFLTLCFSTK------------KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 684 (754)
Q Consensus 617 L~VsL~y~p~------------~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~ 684 (754)
+.+.+.|.|- .|.|.|.+..|.||++.|.+|++||||++.+. +++.+||.++++|+||+|||.|.
T Consensus 1017 ~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln---~k~vyktkv~KktlNPvwNEe~~ 1093 (1227)
T COG5038 1017 VLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFT 1093 (1227)
T ss_pred EEEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec---ceecccccchhccCCCCccccce
Confidence 1122222221 28899999999999999999999999999994 34499999999999999999999
Q ss_pred EEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCc
Q psy7848 685 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD 725 (754)
Q Consensus 685 F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge 725 (754)
.+|... ....|.|.|+|||...+|+.||.+.|+|.....
T Consensus 1094 i~v~~r--~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1094 IEVLNR--VKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred Eeeecc--ccceEEEEEeecccCCCccccccccccHhhcCc
Confidence 998643 468899999999999999999999999987443
No 72
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.74 E-value=1.2e-17 Score=159.36 Aligned_cols=109 Identities=29% Similarity=0.395 Sum_probs=96.6
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|+|.|.+..+.|.|+|++|+||+.+|..|.+||||+|++.++.......+|+++++|+||+|||+|.|. ++..++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence 8999999999999999999999999999999899999999999765444456899999999999999999995 776777
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
....|.|.|||+|..++ ++||++.|.....
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 77789999999999887 9999998766443
No 73
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.74 E-value=1.8e-17 Score=157.70 Aligned_cols=113 Identities=32% Similarity=0.471 Sum_probs=98.7
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC--CceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~--~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
.+|+|.|++.|+...+.|.|+|++|++|+.++..+.+||||+|++.+... ....++|+++.+|+||+|||+|.|. +.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~ 79 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VP 79 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ec
Confidence 37999999999999999999999999999999889999999999986442 2468899999999999999999995 44
Q ss_pred cc--ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 548 ET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 548 ~~--el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
.. .+....|.|.|||++.+++ +|||++.|+|.+|..
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 32 2345789999999999986 999999999998864
No 74
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.74 E-value=8.9e-18 Score=154.55 Aligned_cols=106 Identities=28% Similarity=0.396 Sum_probs=91.5
Q ss_pred eeeccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 630 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|++|+||+.++. +|.+||||++++. ..++||+++++++||.| ||+|.|.+...++....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~----~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG----STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC----CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence 6799999999999984 7899999999994 36899999999999999 9999999987777778999999999999
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhhc-CCCcceeeEEeecC
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMMK-YPDHKHEGIHNLSI 749 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll~-~P~~~ie~Wh~L~~ 749 (754)
++|++||++.+++.. ++. .++..+.+|++|..
T Consensus 77 ~~~~~iG~~~~~l~~----------l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNP----------LLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHH----------hcccCCccccCCeEEccc
Confidence 999999999999974 333 23555778888763
No 75
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.73 E-value=3.4e-17 Score=153.51 Aligned_cols=117 Identities=17% Similarity=0.285 Sum_probs=93.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|++|+..+ .|.+||||+|.+. ..+++|+++.+ +.||+|||+|.|. +... ...|.|+|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeC
Confidence 68999999999988777 7899999999994 36789999876 7999999999995 4432 36799999999
Q ss_pred CCCCC-ccceeeeecCc-ccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~-~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|.++. ++||++.|+|. .+..++..+.|++|. +.. .....|+|+++|+|
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~------~~~------~~~~~g~i~l~l~y 121 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLS------GKQ------GEDKEGMINLVFSY 121 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCc------Ccc------CCCCceEEEEEEeC
Confidence 99997 99999999996 566654544454443 221 13467999999988
No 76
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.73 E-value=3.3e-17 Score=154.25 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=95.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec---cccCcceEEEEEeeC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDD 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~---~el~~~~L~~sV~D~ 563 (754)
++|+|++|+||+.++..|.+||||+|.+.+ .+++|+++.+++||+|||+|.|. +.. +++....|.|.|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-----~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-----EKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-----eeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEc
Confidence 579999999999999999999999999953 67899999999999999999995 444 234568999999999
Q ss_pred CCCCC-ccceeeeecCcccC--CCCccceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 564 DKYGH-DFLGEARFPLNRLR--PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~--~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
+.++. ++||++.|+|.++. .+.....|++| ..... ......|+|+|.++
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L------~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL------ESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEEC------cCCCC----CCccccceEEEEeC
Confidence 99886 99999999999987 33333444444 32211 12457899998874
No 77
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.73 E-value=2.8e-17 Score=155.54 Aligned_cols=106 Identities=41% Similarity=0.706 Sum_probs=94.6
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|+|++.|.+ +.|.|.|++|+||+..+..+.+||||+|.+.+.... .+++|++++++.||.|||+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~- 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD- 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence 599999999988 889999999999999988899999999999765443 4899999999999999999999986544
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
....|.|+|||++.++.+++||.+.+++..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 107 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSE 107 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHH
Confidence 347899999999998899999999999875
No 78
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.72 E-value=2.7e-17 Score=155.53 Aligned_cols=119 Identities=28% Similarity=0.399 Sum_probs=102.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|++.|+...+.|.|+|++|+||+..+..+..||||++++.+........+|+++.++.||.|||+|.|. +....+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence 8999999999999999999999999999998899999999999875544457899999999999999999995 666666
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|.|.|||++.++. ++||++.|++.+ .+...+.|..+
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l 120 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEM 120 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHH
Confidence 67899999999999777 999999999998 33344444444
No 79
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.71 E-value=5.9e-17 Score=153.89 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=95.4
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCC-CCeeceeEEEeeeecccc
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~Tl-NP~WnE~f~F~~I~~~el 551 (754)
+|.|+|.|.+..+.|.|+|++|+||++++..+..||||||+|.+.+....+.||+++++|+ ||+|||+|.|. |+.++.
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~ 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQEH 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchhh
Confidence 7999999999999999999999999998767778999999999877666789999999996 69999999995 666554
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
...|.|+|||++..++ ++||++.+.....
T Consensus 81 -~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 -GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred -eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 5899999999999888 9999999999764
No 80
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.71 E-value=1.1e-16 Score=149.58 Aligned_cols=120 Identities=30% Similarity=0.414 Sum_probs=101.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
+|.|+|++|++|+..|..+.+||||++.+.+ ...++|+++.++.||+|||.|.|. +. .+ ...|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~-~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG----KTVYKSKTIYKNLNPVWDEKFTLP-IE--DV-TQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC----EEEEEeeeccCCCCCccceeEEEE-ec--CC-CCeEEEEEEeCCC
Confidence 4899999999999999999999999999852 367899999999999999999995 43 22 3789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
++. ++||++.|+|.++..+...+.|++|... ......|+|+|.+.|.|
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP------------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCCC------------CCccCceEEEEEEEECC
Confidence 976 9999999999999988777788777531 01356899999999865
No 81
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.71 E-value=9.4e-17 Score=151.37 Aligned_cols=122 Identities=27% Similarity=0.350 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+..+..+.+||||+|++.+ .+++|+++.++.||+|||.|.|.......+....|.|.|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 3899999999999999889999999999964 67899999999999999999996333344445789999999998
Q ss_pred CC-C-ccceeeeecCcccC-CCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 566 YG-H-DFLGEARFPLNRLR-PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 566 ~g-~-dfLGev~I~L~~L~-~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++ . +|||++.|++.++. .+.....|+.|+. ... ....+|+|.|.+.+
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~------~~~-----~~~~~G~l~l~~~~ 125 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK------RGL-----FSRVRGEIGLKVYI 125 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeee------CCC-----CCCccEEEEEEEEE
Confidence 85 5 99999999999987 3334444555542 110 12468999998876
No 82
>KOG1028|consensus
Probab=99.71 E-value=3.6e-17 Score=183.49 Aligned_cols=123 Identities=35% Similarity=0.541 Sum_probs=110.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.+++.|......|.|.|++|.||++++..|.+|||||++|+|+. +.+.+|+++++|+||+|||+|.|.|...
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk-~~k~kT~v~r~tlnP~fnEtf~f~v~~~ 228 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK-KGKFKTRVHRKTLNPVFNETFRFEVPYE 228 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC-CCcceeeeeecCcCCccccceEeecCHH
Confidence 467899999999999999999999999999999988899999999999986 5699999999999999999999999989
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCc--hhhhHHhhh
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD--RLRHWVDMM 734 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge--~~~hW~~ll 734 (754)
++....|.++|||+|.|+.|++||.|.|++..... ....|+++.
T Consensus 229 ~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~ 274 (421)
T KOG1028|consen 229 ELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQ 274 (421)
T ss_pred HhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccc
Confidence 99999999999999999999999999999875322 223455444
No 83
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=6.4e-17 Score=147.54 Aligned_cols=102 Identities=29% Similarity=0.355 Sum_probs=89.1
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+.+|.+||||+|++. .+++||+++++|.||+|||.|.|.+.. .....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG----KTTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC----CEEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence 78999999999999989999999999993 468899999999999999999999963 334689999999886
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
+++||.+.|++. +++..|+..+.+||.|.+.
T Consensus 73 ~~~iG~~~i~l~----------~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLS----------ELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHH----------HhhccccceeeeeEecCCC
Confidence 789999999987 4566677778899999765
No 84
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.70 E-value=8.7e-17 Score=150.74 Aligned_cols=100 Identities=13% Similarity=0.282 Sum_probs=84.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecC-CCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kk-TlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|+|++|++|+..+ .|.+||||+|.+ +..+++|+++.+ ++||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE----CCEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence 68999999999988777 789999999999 456789999765 89999999999998642 3679999999999
Q ss_pred CCCCceeEEEEEecCC---CCchhhhHHhhhc
Q psy7848 707 GKSNDYLGCLELCCNS---KGDRLRHWVDMMK 735 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s---~ge~~~hW~~ll~ 735 (754)
+++|++||.+.|++.. .|+..+.|++|..
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence 9999999999999953 4555677777654
No 85
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.70 E-value=7.3e-17 Score=152.09 Aligned_cols=91 Identities=26% Similarity=0.478 Sum_probs=80.2
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-CccCCCeEEEEEEEccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~-~dL~~~~L~ItV~D~d~~ 707 (754)
+|.|.|++|+||++.+.+|.+||||+|++. ..++||+++++++||+|||.|.|.+.. ..+....|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~----~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD----GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC----CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 489999999999999999999999999994 357899999999999999999999863 334467899999999988
Q ss_pred C-CCceeEEEEEecCCC
Q psy7848 708 K-SNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~-~ddfLG~v~L~l~s~ 723 (754)
+ .++|||++.|++...
T Consensus 77 ~~~d~~lG~v~i~l~~l 93 (127)
T cd04022 77 GRRRSFLGRVRISGTSF 93 (127)
T ss_pred cCCCCeeeEEEEcHHHc
Confidence 6 899999999999753
No 86
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.70 E-value=8.8e-17 Score=156.33 Aligned_cols=89 Identities=26% Similarity=0.331 Sum_probs=78.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecC-CCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kk-TlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
.|.|.|++|+||++++.+|.+||||+|++. ..+++|+++.+ |+||+|||+|.|.+. +.....|.|.|||++.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~----~~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG----NQVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC----CEEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence 378999999999999999999999999994 46889998766 699999999999985 33457899999999998
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
+.|++||.+.|++...
T Consensus 75 ~~dd~lG~v~i~L~~l 90 (150)
T cd04019 75 NKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCeEEEEEEEHHHC
Confidence 8899999999999864
No 87
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=4.2e-17 Score=150.32 Aligned_cols=94 Identities=28% Similarity=0.440 Sum_probs=83.2
Q ss_pred cceeeccccccccccCCCC-CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCcc-CCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL-~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+.++.. |.+||||+|++.+. ++..++|+++++|+||+|||+|.|.+...++ ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999999988 99999999999654 3457899999999999999999999865554 3578999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.|++||.+.|++..
T Consensus 80 ~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 80 RFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99999999999999874
No 88
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.7e-16 Score=153.88 Aligned_cols=107 Identities=30% Similarity=0.375 Sum_probs=87.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeee------------eccccCc
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV------------SETDLSL 553 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I------------~~~el~~ 553 (754)
.|.|+|++|+||+. .+|.+||||+|++.++.....+.+|+++.+|+||+|||+|.|... +..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 578999999999987654456789999999999999999999631 3345556
Q ss_pred ceEEEEEeeCCCCCC-ccceeeeecCcccCCC-CccceEeecc
Q psy7848 554 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLC 594 (754)
Q Consensus 554 ~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~-~~~~~~~~L~ 594 (754)
..|.|.|||++.+++ +|||++.|+|..+... .....|++|.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~ 121 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQ 121 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecC
Confidence 789999999999877 9999999999998865 3344444443
No 89
>KOG1030|consensus
Probab=99.69 E-value=7.3e-17 Score=155.82 Aligned_cols=97 Identities=33% Similarity=0.406 Sum_probs=88.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|-|.|.|++|.||...|..+.+||||.+.| +.++.||+++++++||+|||.|+|.|. |. ...|.++|||+|.+
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~l----g~q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLEL----GNQKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDTF 78 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEE----CCeeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCCC
Confidence 778999999999999999899999999999 667999999999999999999999996 32 58999999999999
Q ss_pred CCCceeEEEEEecCCCCchhhhHH
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWV 731 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~ 731 (754)
++|||||.+.|++...-+....|+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999998777677776
No 90
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.68 E-value=1.7e-16 Score=149.78 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=83.5
Q ss_pred ceeeccccccc---cccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~n---L~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
.|.|.|++|+| |.++|..|.+||||+|.+ +.++.||+++++++||+|||+|.|.+.. . ...|+|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~----g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY----GPKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEE----CCEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECC
Confidence 48899999999 899999999999999999 4558899999999999999999999853 2 358999999999
Q ss_pred CCC------CCceeEEEEEecCCC--CchhhhHHhhh
Q psy7848 706 YGK------SNDYLGCLELCCNSK--GDRLRHWVDMM 734 (754)
Q Consensus 706 ~~~------~ddfLG~v~L~l~s~--ge~~~hW~~ll 734 (754)
.++ .|++||.+.|++.+. +....+||+|.
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 873 899999999998863 33445566555
No 91
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=1.9e-16 Score=146.59 Aligned_cols=99 Identities=36% Similarity=0.568 Sum_probs=83.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|+|.|++|+||+.++.+|.+||||++++ +..++||+++++|+||.|||+|.|.+.. .....|.|+|||++.++.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~~ 75 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRL----GNEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGKK 75 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEE----CCEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence 6899999999999999999999999999 3457899999999999999999999863 346899999999999999
Q ss_pred CceeEEEEEecCCC--CchhhhHHhhh
Q psy7848 710 NDYLGCLELCCNSK--GDRLRHWVDMM 734 (754)
Q Consensus 710 ddfLG~v~L~l~s~--ge~~~hW~~ll 734 (754)
|++||.+.+++... ++....|++|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~ 102 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELE 102 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEcc
Confidence 99999999998753 23344454443
No 92
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.68 E-value=1.7e-16 Score=148.65 Aligned_cols=89 Identities=30% Similarity=0.535 Sum_probs=79.7
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
+|.|.|++|+||..++.+|.+||||+|++ +..+++|+++++|+||.|||+|.|.+... ....|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY----NGQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE----CCEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 58999999999999999999999999998 33578999999999999999999998643 2578999999999999
Q ss_pred CCceeEEEEEecCCC
Q psy7848 709 SNDYLGCLELCCNSK 723 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ 723 (754)
.+++||.+.+++...
T Consensus 75 ~~~~iG~~~~~l~~l 89 (123)
T cd04025 75 KNDFLGKVVFSIQTL 89 (123)
T ss_pred CCcEeEEEEEEHHHc
Confidence 999999999998753
No 93
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.68 E-value=2.1e-16 Score=146.68 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=94.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|+||+..+..+.+||||+|.+.+ ...+|+++. +++||+|||.|.|. +... ....|.|+|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeC
Confidence 57999999999999999899999999999964 567888875 47999999999994 4432 347899999999
Q ss_pred CCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+..++++||++.|++.++....... .|+++... ....|+|++.|.|
T Consensus 73 ~~~~~~~iG~~~~~l~~~~~~~~~~------~w~~L~~~--------~~~~G~i~l~l~f 118 (118)
T cd08681 73 DKRKPDLIGDTEVDLSPALKEGEFD------DWYELTLK--------GRYAGEVYLELTF 118 (118)
T ss_pred CCCCCcceEEEEEecHHHhhcCCCC------CcEEeccC--------CcEeeEEEEEEEC
Confidence 9877799999999999986654433 44444321 3578999999987
No 94
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.68 E-value=4.2e-16 Score=144.26 Aligned_cols=114 Identities=29% Similarity=0.493 Sum_probs=96.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|+||+..+..+.+||||++++. ..+.+|+++.+|+||.|||.|.|. +.. .....|.|.|||++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLH-LFD--DQSQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEE-ecC--CCCCEEEEEEEECCC
Confidence 378999999999999988999999999994 367899999999999999999995 332 235789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
++. ++||++.++|.++..+.....|++|.. ..|+|++.+.|.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-----------------~~G~~~~~~~~~ 115 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELELED-----------------GEGSLLLLLTLT 115 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEEccC-----------------CCcEEEEEEEec
Confidence 877 999999999999988777777777742 259998888763
No 95
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.5e-16 Score=154.63 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=77.6
Q ss_pred ceeeccccccccccCCCCC--------------CCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNG--------------FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G--------------~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
.|.|+|++|++|+.+|.++ .+||||+|.+. .++.||+++++++||+|||+|.|.+...++ .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC----CEeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence 4789999999999998654 68999999983 346799999999999999999999754333 4
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
..|.|+|||+|..++|++||.+.|++..
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 6899999999999999999999999875
No 96
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=3.4e-16 Score=148.35 Aligned_cols=129 Identities=27% Similarity=0.435 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC--CCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~--~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|.|+|++|+||+..+..+.+||||+|++.+.. ......+|+++.+|.||+|||+|.|. +... ...|.|.|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEEC
Confidence 388999999999999988999999999997531 12236799999999999999999995 4332 36799999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+.++. ++||++.|++.++..............||+|.+... .....|+|++++.|
T Consensus 77 ~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-----KSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-----CCcceeEEEEEEee
Confidence 99987 999999999999987644433334556777764321 13569999999987
No 97
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.67 E-value=2.9e-16 Score=150.20 Aligned_cols=114 Identities=27% Similarity=0.371 Sum_probs=93.3
Q ss_pred cccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 624 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 624 ~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
....|.|.|.|++|++|+.++.+|.+||||++++ +..+++|+++++++||.|||+|.|.+. ++....|.|+|||
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~----~~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D 84 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM----GSQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFD 84 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEE
Confidence 3445899999999999999999999999999999 345899999999999999999999985 4556799999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
++.++.|++||.+.|++...-.+.. .....++.|+.|...
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~~~~~~~~~~ 124 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILKETK-------ESKGPITKRLLLHEV 124 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhccccc-------cCCCcEEEEeccccc
Confidence 9999999999999999875322111 233456677777543
No 98
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.67 E-value=3.6e-16 Score=146.59 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=85.7
Q ss_pred eeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 630 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 630 L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
|.|.|++|+||++++ .+|.+||||+|++. +...+||+++++|+||+|||+|.|.|... ...|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence 678999999999974 46889999999993 22478999999999999999999999632 368999999999999
Q ss_pred CCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 709 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
+|++||.+.|+++... .+...+.|+.|++..
T Consensus 76 ~~~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~~ 106 (121)
T cd08401 76 RDSVIGKVAIKKEDLH------------KYYGKDTWFPLQPVD 106 (121)
T ss_pred CCceEEEEEEEHHHcc------------CCCCcEeeEEEEccC
Confidence 9999999999987532 133456777777643
No 99
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=4.3e-16 Score=145.12 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=95.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|++|+..+..+.+||||++++.+.. ....+|+++.++.||+|||+|.|. +... ....|.|.|||+|.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC
Confidence 78999999999999988999999999996432 257799999999999999999994 4433 246799999999998
Q ss_pred CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++++||++.+++.++..+.....|++|.. ...|+|.+.+.+
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~----------------~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP----------------QGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCC----------------CCCceEEEEEEe
Confidence 44999999999999988777777777642 357888877754
No 100
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.67 E-value=1.9e-16 Score=147.86 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=87.1
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
+|.|.|++|+||+.++.+|.+||||++++. ++..++|+++++++||+|||+|.|.+. ++ ...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---CEEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence 488999999999999999999999999983 335889999999999999999999985 33 478999999999999
Q ss_pred CCceeEEEEEecCC--CCchhhhHHhhhcCC
Q psy7848 709 SNDYLGCLELCCNS--KGDRLRHWVDMMKYP 737 (754)
Q Consensus 709 ~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P 737 (754)
+|++||.+.|++.. .+...+.|++|....
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~ 105 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN 105 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCC
Confidence 99999999999986 334555566665433
No 101
>KOG3799|consensus
Probab=99.67 E-value=7.9e-17 Score=147.51 Aligned_cols=116 Identities=22% Similarity=0.512 Sum_probs=96.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhc-------cCCC-ccccccccccccCCCcccccccc
Q psy7848 84 KPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNV-------TGGA-AAAHACALCGDKFSPIFDRLGLF 155 (754)
Q Consensus 84 ~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~-------~~~~-~~~~~C~~C~~~~g~~~~~~~~~ 155 (754)
+..|||++|+-.|.+|+.|+..-+..+-+-.++-++++-++.... +..| ..+..|.+|+++.+ +
T Consensus 6 d~sh~T~he~~qik~vf~rqk~ee~kq~ei~~~~~~e~~el~~Qi~erkEqqKKaGv~ddatC~IC~KTKF--------A 77 (169)
T KOG3799|consen 6 DLSHLTPHERMQIKEVFIRQKIEEHKQFEIYKEQVKEMGELSQQIQERKEQQKKAGVGDDATCGICHKTKF--------A 77 (169)
T ss_pred chhhcCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcCcchhhhhhccc--------c
Confidence 456999999999999999999888888887777777664433222 1111 24699999999998 9
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeeccchhhhhhhhhccccccc
Q psy7848 156 GAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 156 ~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
++.|+.|.+|+.+.|.+||.... ...+..+|+|++|.+..++..+||+|||+
T Consensus 78 DG~GH~C~YCq~r~CARCGGrv~-lrsNKv~wvcnlc~k~q~il~ksg~wf~~ 129 (169)
T KOG3799|consen 78 DGCGHNCSYCQTRFCARCGGRVS-LRSNKVMWVCNLCRKQQEILTKSGAWFYN 129 (169)
T ss_pred cccCcccchhhhhHHHhcCCeee-eccCceEEeccCCcHHHHHHHhcchHHHh
Confidence 99999999999999999999886 23356799999999999999999999998
No 102
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.66 E-value=7.7e-16 Score=145.74 Aligned_cols=118 Identities=35% Similarity=0.496 Sum_probs=98.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|+. +.|.|+|++|+||+..+..+.+||||+|.+.+.......++|+++.++.||.|||+|.|+ +...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence 599999999975 999999999999999988899999999999865444578899999999999999999995 43333
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|.|.|||++..+. ++||++.++|.++... ....|+.|
T Consensus 78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L 119 (131)
T cd04026 78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKL 119 (131)
T ss_pred -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEEC
Confidence 24789999999998877 9999999999998754 33334444
No 103
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.66 E-value=9e-16 Score=143.88 Aligned_cols=118 Identities=24% Similarity=0.384 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 487 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
|.|+|++|+||+.++ ..|.+||||+|.+. .....+|+++.+|+||+|||+|.|. +... ...|.|.|||++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence 789999999999974 46789999999994 2246899999999999999999995 5432 3689999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++. ++||.+.++|.++..+...+.|++|... . ......|+|++++.|
T Consensus 74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV------D-----ADSEVQGKVHLELRL 121 (121)
T ss_pred CCCCceEEEEEEEHHHccCCCCcEeeEEEEcc------C-----CCCcccEEEEEEEEC
Confidence 987 9999999999999876666666666421 0 012358999998865
No 104
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=4e-16 Score=143.42 Aligned_cols=90 Identities=29% Similarity=0.416 Sum_probs=78.6
Q ss_pred cceeeccccccccccCCCC----CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~----G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
|.|.|+|++|+||++.+.. +.+||||+|++ ++.++||+++++++||+|||+|.|.+...+. ...|.|.|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE----CCEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence 5789999999999988642 35899999999 4457899999999999999999999875443 4689999999
Q ss_pred ccCCCCCceeEEEEEecCC
Q psy7848 704 KDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s 722 (754)
++.+++|++||.+.|++..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred CCCCCCCcceEEEEEEHHH
Confidence 9999999999999999875
No 105
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=7.5e-16 Score=147.40 Aligned_cols=122 Identities=25% Similarity=0.449 Sum_probs=95.8
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.-|.|.|+|++|++|+..|..|.+||||++++. ...++|+++.++.||.|||+|.|. +. ++....|.|.|||
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~V~D 84 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCITVFD 84 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEEEEE
Confidence 347899999999999999999999999999984 367899999999999999999994 33 3345789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+|.++. ++||++.|+|.++...... ....+..|..+ .....|+|++.+.+
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILKETKE-SKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhcccccc-CCCcEEEEecc----------ccccceeEEEEEEe
Confidence 999887 9999999999998752111 11112222222 14678999998876
No 106
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.66 E-value=2.3e-16 Score=146.39 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=85.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|.|++|+||+..+..|.+||||+|++. ..+++|+++. .++||+|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG----GVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC----CCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence 5799999999999999999999999999994 3577888865 579999999999999743 35789999999998
Q ss_pred CCCCceeEEEEEecCC--CCchhhhHHhhhcC
Q psy7848 707 GKSNDYLGCLELCCNS--KGDRLRHWVDMMKY 736 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~ 736 (754)
.+ |++||.+.|++.. .+....+|++|...
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 105 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLK 105 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence 76 9999999999985 34456778877643
No 107
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.66 E-value=1.3e-15 Score=148.23 Aligned_cols=135 Identities=24% Similarity=0.281 Sum_probs=100.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
.|.|+|++|+||+.+|..|.+||||+|.+.+ ...+|+++.+ |+||+|||.|.|. +. +.....|.|.|||++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~ 72 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFV-AA--EPFEDHLILSVEDRV 72 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEE-ec--CccCCeEEEEEEEec
Confidence 3899999999999999999999999999964 7889999876 6999999999994 43 223468999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccc-cccccccccceeEEeeeccccccce
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV-WGEEECWQHGKIFLTLCFSTKKRAL 630 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~-~~~~~~~~~GeL~VsL~y~p~~g~L 630 (754)
..++ ++||++.|+|.++..+.. .......||+|...... .+.......|+|+|.+.|.+....+
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~--~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVD--DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCC--CCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8876 999999999999864311 11123455555433210 0111235689999999998654443
No 108
>KOG0696|consensus
Probab=99.65 E-value=9.2e-17 Score=172.17 Aligned_cols=112 Identities=35% Similarity=0.508 Sum_probs=101.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
+.+|+|.+.+.. ....|+|+|.+|+||.+||.+|.+||||++.|.|+.+...+.+|++++.|+||+|||+|.|. +..
T Consensus 166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp 242 (683)
T KOG0696|consen 166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKP 242 (683)
T ss_pred hhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-ccc
Confidence 679999998887 68899999999999999999999999999999998888889999999999999999999995 444
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.+. .+.|.|+|||||+.++ +|+|...+.+.+|...
T Consensus 243 ~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 243 SDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccc-cceeEEEEecccccccccccceecccHHHHhhc
Confidence 444 3789999999999999 9999999999998654
No 109
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=8.8e-16 Score=144.47 Aligned_cols=108 Identities=28% Similarity=0.371 Sum_probs=92.4
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|++++..|.+||||+|++.+. ....||.++++++||+|||+|.|.+.. .....|.|+|||++.++.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~~~~ 77 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEATL--PGNSILKISVMDYDLLGS 77 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence 7899999999999999999999999999422 235788888999999999999998742 235789999999999999
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
|++||.+.|++....- ..||+.|...|.....
T Consensus 78 dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~ 109 (124)
T cd04037 78 DDLIGETVIDLEDRFF-SKHRATCGLPPTYEES 109 (124)
T ss_pred CceeEEEEEeeccccc-chHHHhccCCCccccc
Confidence 9999999999997644 7899999988876644
No 110
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.65 E-value=5.8e-16 Score=144.24 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=78.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+..|.+||||++++.+. ...++||+++++++||+|||+|.|.+... ....|.|+|||++.+ .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-SDEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-CCccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence 7899999999999998899999999998543 23578999999999999999999998643 346799999999998 8
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
|++||.+.+++..
T Consensus 78 ~~~iG~~~~~l~~ 90 (119)
T cd04036 78 DDHLGTVLFDVSK 90 (119)
T ss_pred CcccEEEEEEHHH
Confidence 9999999999875
No 111
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.65 E-value=5.9e-16 Score=145.10 Aligned_cols=118 Identities=29% Similarity=0.429 Sum_probs=92.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+.+ .+||||++++.. .+.+|++++++.||+|||+|.|. ...+....|.|.|||+|..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~---~~~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFS---KDRLQGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEE---cCCCcCCEEEEEEEeCCCC
Confidence 89999999999987 689999999953 57799999999999999999995 2334568899999999988
Q ss_pred CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+++|||++.|+|.++....... ......||+|.+... ...+|+|+|++.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~-~~~~~~W~~L~~~~~------~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLEDKKG------GRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCC-CCCCcceEEccCCCC------CccceEEEEEEEe
Confidence 6699999999999986542210 111234555543321 3578999999987
No 112
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.65 E-value=7.8e-16 Score=144.55 Aligned_cols=89 Identities=29% Similarity=0.441 Sum_probs=80.4
Q ss_pred cceeeccccccccccCCC--CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+..+. .|.+||||+|++ +..+++|+++++++||.|||+|.|.+.. .....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~----~~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV----GAQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE----CCEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence 578999999999999988 889999999998 3458899999999999999999999863 45689999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.+++||.+.|++..
T Consensus 75 ~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 75 RFAGKDYLGEFDIALEE 91 (128)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99899999999999875
No 113
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=5.4e-16 Score=142.74 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=87.4
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec--CccCCCeEEEEEEE
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVWD 703 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~--~dL~~~~L~ItV~D 703 (754)
....|.|.|++|+||. +|.+||||+|++. ..+++|+++++++||.|||+|.|.+.. .++.+..|.|+|||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 3467899999999998 6789999999994 347799999999999999999999642 34556899999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCC-cceeeEEeecC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD-HKHEGIHNLSI 749 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~-~~ie~Wh~L~~ 749 (754)
++.+++|++||.+.|++... +..|+ .-+..|+.|..
T Consensus 74 ~~~~~~~~~iG~~~i~l~~v----------~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGTV----------YDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CcccccCCccEEEEECCccc----------cCCCCCcceEEEEEeeC
Confidence 99998899999999999864 33333 34578988864
No 114
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.64 E-value=2e-15 Score=141.41 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|++|+.++..+.+||||+|++.. ...+|+++.++.||+|||+|.|. +... ....|.|+|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-----QTLETSVVKKSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-----EEEeceeecCCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCC
Confidence 3899999999999999888999999999842 67899999999999999999995 3322 25789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
++. +|||++.++|.++........|+.|.. .... ........|.|.|.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~------~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP------DPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCC------CCCC-CccccCceEEEEEEe
Confidence 887 999999999999876544455555542 1111 112256778887765
No 115
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.64 E-value=8.4e-16 Score=145.08 Aligned_cols=100 Identities=28% Similarity=0.424 Sum_probs=85.5
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 486 SLHVTLHRAKG---LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 486 ~L~VtIi~Arn---L~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.|+|+|++|+| |..+|..|.+||||+|.+.+ .+.||+++.+++||+|||+|.|+ +... ...|.|.|||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-----~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d 71 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-----KWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFD 71 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-----EEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEE
Confidence 38999999999 88999999999999999943 68899999999999999999995 3221 2589999999
Q ss_pred CCCC-------CCccceeeeecCcccCCCCccceEeecc
Q psy7848 563 DDKY-------GHDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 563 ~d~~-------g~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
++.+ +++|||++.|+|..+..+.....|++|.
T Consensus 72 ~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 72 NSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 9987 4499999999999998876666676665
No 116
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.64 E-value=8.1e-16 Score=141.75 Aligned_cols=96 Identities=26% Similarity=0.415 Sum_probs=82.7
Q ss_pred CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc-CcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el-~~~~L~~sV~D 562 (754)
|.|+|+|++|++|+..|.. +.+||||+|++.+.+ ....+|+++++++||+|||.|.|. +...++ ....|.|.|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEe
Confidence 6799999999999999987 899999999996543 356899999999999999999985 333323 35789999999
Q ss_pred CCCCCC-ccceeeeecCcccCC
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~ 583 (754)
+|.++. ++||++.+++.+|..
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHhc
Confidence 999987 999999999999974
No 117
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=1.1e-15 Score=145.80 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=87.5
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-----CccC--CCeEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVITV 701 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~-----~dL~--~~~L~ItV 701 (754)
+|.|.|++|++|+.+|.+|.+||||+|++. ..++||+++++|+||.|||+|.|.+.. .++. ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 689999999999999999999999999993 458899999999999999999998431 1222 25799999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
||++..+.|++||++.+........ . .++..+.+||+|...
T Consensus 78 ~d~d~~~~d~~iG~~~i~~~~~~~~--~------~~~~~~~~W~~L~~~ 118 (135)
T cd04017 78 FDQDSVGKDEFLGRSVAKPLVKLDL--E------EDFPPKLQWFPIYKG 118 (135)
T ss_pred EeCcCCCCCccceEEEeeeeeeccc--C------CCCCCCceEEEeecC
Confidence 9999999999999999853321110 0 156778899998744
No 118
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=4.2e-16 Score=151.85 Aligned_cols=95 Identities=35% Similarity=0.613 Sum_probs=82.2
Q ss_pred eccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-------------------------ceeeeeeecCCCC
Q psy7848 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLN 676 (754)
Q Consensus 622 ~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-------------------------~k~KT~v~kkTlN 676 (754)
...|..+.|.|.|++|+||.++|.+|.+||||+|++.+.... ..++|.++++|+|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 456677999999999999999999999999999999654211 2479999999999
Q ss_pred CccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 677 PIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 677 P~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
|.|||+|.|.+. ++....|.|+|||++ ++|||.+.|+++.
T Consensus 102 P~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 102 PVWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred CccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 999999999985 445689999999998 8999999999875
No 119
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.64 E-value=2.4e-15 Score=147.49 Aligned_cols=123 Identities=25% Similarity=0.342 Sum_probs=98.1
Q ss_pred CCEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEeCCCCCceEEEeeeecCCC
Q psy7848 484 TCSLHVTLHRAKGLRAMD------------------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 533 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d------------------------------~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~Tl 533 (754)
.|.|.|+|++|++|+.+| ..|.+||||+|.+.+ ....+|+++.++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----ARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eEeeEEEEeCCCC
Confidence 388999999999999988 346789999999953 2457999999999
Q ss_pred CCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccc
Q psy7848 534 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQ 613 (754)
Q Consensus 534 NP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~ 613 (754)
||+|||.|.|+ +... ...|.|.|||+|.++.++||.+.|+++++..+...+.|++|.... ......
T Consensus 82 nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----------~~~~~~ 147 (158)
T cd04015 82 NPVWNESFHIY-CAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----------GKPPKP 147 (158)
T ss_pred CCccceEEEEE-ccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----------CCCCCC
Confidence 99999999985 3322 357999999999988899999999999998776666677664310 111345
Q ss_pred cceeEEeeecc
Q psy7848 614 HGKIFLTLCFS 624 (754)
Q Consensus 614 ~GeL~VsL~y~ 624 (754)
.|+|+|++.|.
T Consensus 148 ~~~l~v~~~f~ 158 (158)
T cd04015 148 GAKIRVSLQFT 158 (158)
T ss_pred CCEEEEEEEEC
Confidence 78999999883
No 120
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.64 E-value=1.1e-15 Score=143.05 Aligned_cols=104 Identities=26% Similarity=0.394 Sum_probs=85.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||++++.+|.+||||+|.+. +....||+++++++||.|||.|.|.+... ...|.|.|||++.++.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---NEVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---CEeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence 78999999999999999999999999993 23367999999999999999999998532 3689999999999999
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
|++||.+.|++.. +. ..+..++.|+.|++.
T Consensus 76 d~~iG~~~~~~~~----------~~-~~~~~~~~W~~L~~~ 105 (121)
T cd04054 76 DDVIGKVSLTREV----------IS-AHPRGIDGWMNLTEV 105 (121)
T ss_pred CCEEEEEEEcHHH----------hc-cCCCCCCcEEECeee
Confidence 9999999999752 22 223345677777653
No 121
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.63 E-value=2.4e-15 Score=141.68 Aligned_cols=122 Identities=28% Similarity=0.381 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+. ..+.+||||++++.. ...+++|+++.+|+||+|||.|.|. +... ...|.|.|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCC
Confidence 6899999999988 678999999999852 1356899999999999999999985 4322 47899999999998
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccc
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 627 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~ 627 (754)
++ +|||++.|++.++........|++|.. ... ......|+|.+.+.|.+..
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~------~~~----~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQG------RPY----EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecC------CCC----CCCCcceEEEEEEEEeccc
Confidence 87 999999999999987656555655542 110 1246799999999997654
No 122
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.63 E-value=1.3e-15 Score=143.92 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=91.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC-
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG- 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~- 707 (754)
.|.|.|++|++|+.+|.+|.+||||+|++. ..+++|+++++|+||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCCc
Confidence 588999999999999999999999999983 3478999999999999999999987422 46899999999852
Q ss_pred ----------CCCceeEEEEEecCCCCchhhhHHhhhcCCC-cceeeEEee
Q psy7848 708 ----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPD-HKHEGIHNL 747 (754)
Q Consensus 708 ----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~-~~ie~Wh~L 747 (754)
+.+++||.+.+++.........||.|....+ ..+.++..|
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence 5799999999999877667777888775443 244555554
No 123
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.63 E-value=1.6e-15 Score=145.38 Aligned_cols=109 Identities=29% Similarity=0.452 Sum_probs=89.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-------------ccCCCe
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT 696 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-------------dL~~~~ 696 (754)
|.|.|++|+||+.+ .+|.+||||+|++.......+++|++++++.||.|||+|.|.+... ++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999998 8889999999999754224589999999999999999999998653 446789
Q ss_pred EEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 697 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 697 L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
|.|+|||++.++.++|||.+.|++.... .....+.|+.|++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcC
Confidence 9999999999889999999999988532 233456777776654
No 124
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.63 E-value=9.1e-16 Score=143.82 Aligned_cols=84 Identities=31% Similarity=0.445 Sum_probs=74.5
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|++|+||+.+ .+||||++++. ..+.||+++++|+||+|||+|.|.+. ++....|.|+|||++.+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~----~~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG----NYKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC----CccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence 378999999999887 68999999994 35789999999999999999999974 44678999999999987
Q ss_pred CCceeEEEEEecCCC
Q psy7848 709 SNDYLGCLELCCNSK 723 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ 723 (754)
.+++||.+.|++...
T Consensus 70 ~~~~lG~~~i~l~~l 84 (121)
T cd08378 70 KDDFLGGVCFDLSEV 84 (121)
T ss_pred cCceeeeEEEEhHhC
Confidence 789999999999864
No 125
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=9.9e-16 Score=149.25 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=87.0
Q ss_pred eeeccccccc--cccCCCCCCCCceEEEEe-cCCCCcceeeeeeecCCCCCccceeEEEEeecC------ccCCCeEEEE
Q psy7848 630 LIVNLIKCTN--LIPMDSNGFSDPFIKLYL-KPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT 700 (754)
Q Consensus 630 L~V~V~~A~n--L~~~d~~G~sDPYVKV~L-~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~------dL~~~~L~It 700 (754)
+.++|..|.+ |++.+.++.+||||++++ .|.....+.||+++++|+||+|||+|.|.|... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 788888999999999997 454445699999999999999999999999654 3567889999
Q ss_pred EEEccCC-CCCceeEEEEEecCCC--CchhhhHHhhhc
Q psy7848 701 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK 735 (754)
Q Consensus 701 V~D~d~~-~~ddfLG~v~L~l~s~--ge~~~hW~~ll~ 735 (754)
|||++.+ .+|++||.+.|.|... ..+..+|++|+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 9999976 5799999999999875 456777998884
No 126
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=3.3e-15 Score=138.79 Aligned_cols=115 Identities=27% Similarity=0.382 Sum_probs=92.8
Q ss_pred CEEEEEEEEecCCCCCCC------CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~------~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
|.|.|+|++|+||+..+. .+.+||||++++.+ ..++|+++.++.||+|||.|.|. +.. .....|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~-v~~--~~~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAV-VDE--VPGQELEI 72 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEE-eCC--CCCCEEEE
Confidence 579999999999998874 36899999999953 68899999999999999999984 332 23579999
Q ss_pred EEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 559 LVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 559 sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.|||++...+++||++.++|.++........|++|. ....|+|++.+++
T Consensus 73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------------~~~~G~~~~~~~~ 121 (121)
T cd08391 73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLE----------------DVKSGRLHLKLEW 121 (121)
T ss_pred EEEecCCCCCCcEEEEEEEHHHhcccCccceEEECc----------------CCCCceEEEEEeC
Confidence 999999884499999999999987654444555553 1257999888764
No 127
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=1.9e-15 Score=143.28 Aligned_cols=90 Identities=31% Similarity=0.434 Sum_probs=79.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCC-CCc--ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~-~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|++|+||+.++..|.+||||+|++.+. .+. .+++|.++++|+||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCC
Confidence 7899999999999999999999999999754 121 267999999999999999999998643 4679999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy7848 707 GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s 722 (754)
++.+++||.+.|++.+
T Consensus 79 ~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 79 LTRDDFLGQVEVPLNN 94 (133)
T ss_pred CCCCCeeEEEEEEHHH
Confidence 9999999999999876
No 128
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.62 E-value=1.1e-15 Score=141.73 Aligned_cols=101 Identities=32% Similarity=0.500 Sum_probs=86.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|+||+.++.++.+||||+|++. ...++|+++++++||.|||+|.|.+. ++ ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV----NARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC----CEeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence 5789999999999999999999999999993 33679999999999999999999985 33 47899999999998
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhhc
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMMK 735 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll~ 735 (754)
+++++||.+.+++.....+..+|+.+..
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~~ 101 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGERKWYALKD 101 (119)
T ss_pred CCCceeeEEEEEHHHCCCCCceEEECcc
Confidence 8999999999998775555566776653
No 129
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.62 E-value=7.8e-15 Score=173.44 Aligned_cols=225 Identities=23% Similarity=0.367 Sum_probs=163.3
Q ss_pred CCEEEEEEEEecCCCCCC--CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d--~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
-|+|.|+|..|++|...+ .++..|||+.+.+.. ....||++++++.||+|||+|.. ....+ ...|.|+||
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~----r~~gkT~v~~nt~nPvwNEt~Yi---~lns~-~d~L~Lsly 506 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD----RVIGKTRVKKNTLNPVWNETFYI---LLNSF-TDPLNLSLY 506 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEecc----ccCCccceeeccCCccccceEEE---Eeccc-CCceeEEEE
Confidence 378999999999999988 679999999999753 24459999999999999999865 22333 478999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCccce-Eeec-------------ccCCCCCccc-cccccc---c------------
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHISRDL-CLNL-------------CKHYPVPREE-EVWGEE---E------------ 610 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~~~~-~~~L-------------~~~~~l~~~~-~~~~~~---~------------ 610 (754)
|.+.+.. +.+|.+.++|..|..+..... ...+ .+||+.-... ...+.. +
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~ 586 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLR 586 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEee
Confidence 9776665 999999999998876533321 1111 0233321100 000000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7848 611 -------------------------------------------------------------------------------- 610 (754)
Q Consensus 611 -------------------------------------------------------------------------------- 610 (754)
T Consensus 587 ~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li 666 (1227)
T COG5038 587 EVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLI 666 (1227)
T ss_pred ccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhh
Confidence
Q ss_pred ------------ccccceeEEeeeccc---------------cccceeeccccccccccCCCCCCCCceEEEEecCCCCc
Q psy7848 611 ------------CWQHGKIFLTLCFST---------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK 663 (754)
Q Consensus 611 ------------~~~~GeL~VsL~y~p---------------~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k 663 (754)
...+|+|.++..+.| ..|.++|.|..|.+|.....+|.+|||.+|.+. +.
T Consensus 667 ~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n---~~ 743 (1227)
T COG5038 667 DRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN---NL 743 (1227)
T ss_pred hccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec---ce
Confidence 011223333222111 128899999999999988889999999999994 34
Q ss_pred ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 664 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 664 ~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
.++||-....|+||.||+....+|.. ....|.+.++|++..+.|.+||++.+.+..
T Consensus 744 ~k~rti~~~~~~npiw~~i~Yv~v~s---k~~r~~l~~~~~~~sgddr~lg~~~i~vsn 799 (1227)
T COG5038 744 VKYRTIYGSSTLNPIWNEILYVPVTS---KNQRLTLECMDYEESGDDRNLGEVNINVSN 799 (1227)
T ss_pred eEEEEecccCccccceeeeEEEEecC---CccEEeeeeecchhccccceeceeeeeeee
Confidence 59999999999999999988777742 245689999999999999999999999875
No 130
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.62 E-value=5.1e-15 Score=139.04 Aligned_cols=125 Identities=26% Similarity=0.372 Sum_probs=95.3
Q ss_pred CEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
|.|.|+|++|+||+..+. .+.+||||+|++. ...++|+++.+++||.|||.|.|+ +.. .....|.|.|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEE
Confidence 579999999999999998 8899999999984 367899999999999999999985 332 345899999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++..+. ++||++.|+|.++...... -....||.+.+... .......|+|+|.+.+
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~---~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKT---GQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhccccc---CccceeEEccCccc---CccccccceEEEEEEC
Confidence 999876 9999999999998632110 01123444443211 1224578999988753
No 131
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.62 E-value=4e-15 Score=140.13 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=75.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+. .+|.+||||++++.. ...+++|+++++|+||+|||+|.|.+.. ....|.|.|||++..+.
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE--PPQKYQSSTQKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC--CCcEEEeEEEecCCCCccCceEEEEeCC---CCCEEEEEEEECCCCCC
Confidence 6799999999988 778999999999931 1347899999999999999999999853 25789999999999989
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
|+|||.+.|++..
T Consensus 74 ~~~lG~~~i~l~~ 86 (126)
T cd08678 74 SKFLGLAIVPFDE 86 (126)
T ss_pred CceEEEEEEeHHH
Confidence 9999999999985
No 132
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.61 E-value=2.5e-15 Score=138.25 Aligned_cols=91 Identities=29% Similarity=0.465 Sum_probs=81.6
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 487 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|+|++|++|+.++ ..+.+||||++++.+ .+++|+++.+++||.| ||.|.|. +...++....|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCC
Confidence 679999999999998 478899999999953 7889999999999999 9999994 6666666689999999999
Q ss_pred CCCC-ccceeeeecCcccCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~ 583 (754)
.+++ ++||++.++|.++..
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCCCCCceEEEEEeHHHhcc
Confidence 9887 999999999999876
No 133
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.61 E-value=7.4e-15 Score=138.57 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=92.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.|+|++|+||+.. +.+||||+|++.. ....+|++. ++.||.|||.|.|. +...++ ..|.|.|||++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~ 72 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA 72 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence 4699999999999874 4789999999942 245688875 58999999999995 222222 47899999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
.++. ++||++.|+|..+..+...+.|+.|.. ... ......|+|+|++.|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~------~~~----~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSS------ASP----LKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEEccc------CCC----CCCCcCcEEEEEEEEEcc
Confidence 9887 999999999999887655555555542 210 124578999999999764
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.60 E-value=4.5e-15 Score=139.17 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=88.7
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCcc-CCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL-~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+.++..+.+||||+|++. ...++|+++. +++||.|||+|.|.+...+. ....|.|.|||++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 5789999999999999988999999999983 3467888877 48999999999999875432 2468999999999
Q ss_pred CCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 706 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
.++.+++||.+.|++.. ++.. ...++|+.|+|..+
T Consensus 77 ~~~~d~~iG~~~i~l~~----------l~~~--~~~~~~~~l~p~~~ 111 (124)
T cd04049 77 NFSDDDFIGEATIHLKG----------LFEE--GVEPGTAELVPAKY 111 (124)
T ss_pred cCCCCCeEEEEEEEhHH----------hhhC--CCCcCceEeeccce
Confidence 99899999999999874 3332 23467777777654
No 135
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.60 E-value=2.1e-15 Score=140.11 Aligned_cols=88 Identities=28% Similarity=0.497 Sum_probs=77.4
Q ss_pred cceeeccccccccccCCC------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
|.|.|.|++|+||+.++. .|.+||||+|++. ...++|+++++++||+|||.|.|.+.. .....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG----AQTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC----CEeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEE
Confidence 568999999999998875 3689999999994 368999999999999999999999853 3467999999
Q ss_pred EEccCCCCCceeEEEEEecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s 722 (754)
||++.. .+++||.+.|++..
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHH
Confidence 999988 89999999999875
No 136
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=7.5e-15 Score=137.84 Aligned_cols=103 Identities=30% Similarity=0.511 Sum_probs=85.0
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|+|.|++|+||+.++.+|.+||||+|++.+. ....+||+++++++||.|||+|.|.+... ....|.|+|||++.++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 57899999999999999999999999997432 23478999999999999999999998643 3578999999999988
Q ss_pred CCceeEEEEEecCCC-----CchhhhHHhhh
Q psy7848 709 SNDYLGCLELCCNSK-----GDRLRHWVDMM 734 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~-----ge~~~hW~~ll 734 (754)
.+++||.+.|++... +.....|++|.
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 999999999998741 22344566554
No 137
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.60 E-value=1.2e-14 Score=137.00 Aligned_cols=121 Identities=23% Similarity=0.334 Sum_probs=94.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|+|+|++|++|...+..|.+||||++.+.+ ..++|+++.++.||+|||.|.|+ +.. ....|.|+|||++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~i~V~d~~ 73 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----ESVRSPVQKDTLSPEFDTQAIFY-RKK---PRSPIKIQVWNSN 73 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----EEEEeCccCCCCCCcccceEEEE-ecC---CCCEEEEEEEECC
Confidence 57999999999999999899999999999853 67899999999999999999985 222 2578999999999
Q ss_pred CCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 565 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 565 ~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..+++|||++.+++.++..... .+++|.. .. ........|+|.+.+.+.+
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~--~~-------~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQTL--RTLPLRK--RG-------RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCCceEEEEEecccCCCcCc--eEEEccc--CC-------CCCCCCCCCEEEEEEEEcc
Confidence 9877999999999998654333 3333431 00 1123567899998887654
No 138
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.60 E-value=1.1e-14 Score=135.26 Aligned_cols=117 Identities=37% Similarity=0.581 Sum_probs=93.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|+||+.++..+.+||||+|++.. ...+|+++.++.||.|||+|.|+ +. ++ ...|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~-~~--~~-~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFP-IK--DI-HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEE-ec--Cc-CCEEEEEEEECC
Confidence 57999999999999999889999999999953 56799999999999999999985 32 22 378999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
..+. ++||++.+++.++..+.. .|+.| .... ......|+|++++.+
T Consensus 72 ~~~~~~~iG~~~~~l~~~~~~~~--~~~~l------~~~~-----~~~~~~G~i~l~~~~ 118 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSIKNGER--KWYAL------KDKK-----LRTRAKGSILLEMDV 118 (119)
T ss_pred CCCCCceeeEEEEEHHHCCCCCc--eEEEC------cccC-----CCCceeeEEEEEEEe
Confidence 9776 999999999999875532 23333 2211 113468999999876
No 139
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=8.4e-15 Score=136.67 Aligned_cols=121 Identities=26% Similarity=0.342 Sum_probs=95.2
Q ss_pred CEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|++|+..+ ..+.+||||++.+.++ ....+|+++.++.||.|||.|.|. +. .....|.|+|||+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~ 74 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDF 74 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEec
Confidence 57999999999999765 4567999999999642 367899999999999999999984 44 2357999999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
+..+. ++||++.++|.++........+ ++.+.. .....|+|+|+|.|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~-----~~~~~~--------~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQENL-----TKNLLR--------NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccccCc-----chhhhc--------CCccceEEEEEEEeCC
Confidence 99877 9999999999998865443211 112211 1356799999999976
No 140
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.59 E-value=3.2e-15 Score=146.68 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=86.4
Q ss_pred cceeeccccccccccCC------------------------------CCCCCCceEEEEecCCCCcceeeeeeecCCCCC
Q psy7848 628 RALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNP 677 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d------------------------------~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP 677 (754)
|.|.|+|++|++|+.|| ..|.+||||+|++. +.+..||+++++++||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~---~~~~~rT~v~~~~~nP 83 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA---GARVARTRVIENSENP 83 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC---CeEeeEEEEeCCCCCC
Confidence 78999999999999988 35779999999993 2235799999999999
Q ss_pred ccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhhhcCCCcc
Q psy7848 678 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 678 ~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P~~~ 740 (754)
+|||+|.|.+... ...|.|.|||+|.++ +++||.+.|++.. .+...++|++|....+.+
T Consensus 84 ~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 84 VWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred ccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCC
Confidence 9999999987532 357999999999886 6899999999886 455666777777654443
No 141
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=4e-15 Score=140.63 Aligned_cols=90 Identities=26% Similarity=0.450 Sum_probs=78.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|++|++|+. +..|.+||||+|++. ..++||+++++++||+|||+|.|.+... .....|.|+|||++.+
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~----~~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFG----GQEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDNG 101 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCCCCeEEEEEEC----CccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCCC
Confidence 789999999999974 677889999999993 3488999999999999999999974211 2457999999999999
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
+.|++||.+.|++.+.
T Consensus 102 s~dd~IG~~~i~l~~~ 117 (127)
T cd04032 102 WDDDLLGTCSVVPEAG 117 (127)
T ss_pred CCCCeeEEEEEEecCC
Confidence 9999999999999863
No 142
>KOG1030|consensus
Probab=99.59 E-value=3.3e-15 Score=144.47 Aligned_cols=95 Identities=37% Similarity=0.614 Sum_probs=83.8
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-|.|.|+|++|.||..+|..+.+||||.+.+. .++.+|+++.+++||+|||+|.|. |. +. ...|.+.|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~-v~--d~-~~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFT-VK--DP-NTPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEE-ec--CC-CceEEEEEEeC
Confidence 37899999999999999988999999999995 488999999999999999999994 33 22 37899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCcc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISR 587 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~ 587 (754)
|.+.. ||||+|.|+|..+......
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred CCCCcccccceeeeccHHHHHHhhh
Confidence 99998 9999999999988765443
No 143
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.59 E-value=6e-15 Score=142.66 Aligned_cols=111 Identities=27% Similarity=0.292 Sum_probs=89.6
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|+||+..+. +.+||||++++ +..++||+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~----g~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL----GNQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE----CCEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCC
Confidence 678999999999998887 88999999999 44689999999999999999999998632 57899999999999
Q ss_pred CCCceeEEEEEecCCCCch-hhhHHhhhcCCCcceeeEEee
Q psy7848 708 KSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~-~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+.|++||.+.+++...-+. ..+|..-+ ..+..+..|.+-
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPS 113 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecC
Confidence 9999999999998863321 22232222 226667777763
No 144
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=1.8e-14 Score=137.40 Aligned_cols=124 Identities=22% Similarity=0.381 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec----cccC--cceEEEE
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE----TDLS--LQSLHIL 559 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~----~el~--~~~L~~s 559 (754)
.|+|+|++|++|+.+|..|.+||||+|.+.. .+.+|+++.+|+||.|||.|.|..+.. .++. ...|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 6899999999999999999999999999953 678999999999999999999854332 1121 2579999
Q ss_pred EeeCCCCCC-ccceeeee-cCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 560 VLDDDKYGH-DFLGEARF-PLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I-~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
|||+|..++ +|||++.+ ++..+.... .......|++|... ....|+|+|++.+.+
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~---~~~~~~~W~~L~~~--------~~~~Geil~~~~~~~ 133 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEE---DFPPKLQWFPIYKG--------GQSAGELLAAFELIE 133 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCC---CCCCCceEEEeecC--------CCchhheeEEeEEEE
Confidence 999999887 99999987 544443210 11122344444322 247899999998865
No 145
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.58 E-value=2e-14 Score=134.93 Aligned_cols=118 Identities=25% Similarity=0.378 Sum_probs=93.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+..+..+.+||||+|++.+.. ...++|+++.+++||.|||+|.|. +... ....|.|+|||++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d 75 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRS 75 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECC
Confidence 3689999999999999999999999999975421 357899999999999999999995 4332 3478999999999
Q ss_pred CCCC-ccceeeeecCcccCCC---CccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~---~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..+. ++||++.++|..+... .....|+.|. ..|+|++.+.|..
T Consensus 76 ~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------------~~g~i~l~~~~~~ 122 (126)
T cd04043 76 FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------------------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------------------CCCeEEEEEEEee
Confidence 9877 9999999999876432 2334455442 2588888887754
No 146
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.58 E-value=9.5e-15 Score=134.29 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=78.7
Q ss_pred CEEEEEEEEecCCCCCCCC----CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIH----GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~----g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
|.|.|+|++|++|+..+.. +.+||||+|++. ...+||+++++++||+|||.|.|. +...+. ...|.|.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V 73 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKV 73 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEE
Confidence 6799999999999998742 358999999984 367899999999999999999995 433332 36899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
||+|.+++ ++||++.|+|.+|...
T Consensus 74 ~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 74 LDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred EECCCCCCCcceEEEEEEHHHHHhh
Confidence 99999988 9999999999998654
No 147
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=7.4e-15 Score=137.48 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=87.2
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|++|+..+.+|.+||||+|++. +..+++|.+++++.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC---CEEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence 5688999999999999999999999999993 23578999999999999999999988543 46899999999999
Q ss_pred CCCceeEEEEEecCC-CCchhhhHHhhhcCCC
Q psy7848 708 KSNDYLGCLELCCNS-KGDRLRHWVDMMKYPD 738 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~P~ 738 (754)
+.|++||.+.+++.. ......-||.++..-.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEE 106 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCCCceEEecCCCc
Confidence 999999999999875 2224455666665543
No 148
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.57 E-value=1.2e-14 Score=137.10 Aligned_cols=98 Identities=17% Similarity=0.371 Sum_probs=77.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|++|+||+.. +.+||||+|++. +.+..||+++ +++||.|||+|.|.+...++ ..|.|.|||++.+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~---~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN---EVKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC---CEeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCC
Confidence 4699999999999874 479999999993 2346788874 68999999999998654333 4789999999999
Q ss_pred CCCceeEEEEEecCC--CCchhhhHHhhh
Q psy7848 708 KSNDYLGCLELCCNS--KGDRLRHWVDMM 734 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s--~ge~~~hW~~ll 734 (754)
++|++||.+.|++.. .+...++||.|.
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~ 103 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQETDEWYPLS 103 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence 999999999999885 333445555554
No 149
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.57 E-value=2.2e-14 Score=134.26 Aligned_cols=118 Identities=29% Similarity=0.467 Sum_probs=91.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+.++..|.+||||++.+.+ ....+|+++.+++||+|||.|.|. +... ...|.|.|||++.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~ 72 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDT 72 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCC
Confidence 3889999999999999999999999999852 245799999999999999999995 3322 3689999999999
Q ss_pred CCC-ccceeeeecCcccCCCC-ccceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 566 YGH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~-~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
++. ++||++.+++.++.... ..+.|+.| .+.. ......|+|++.+.
T Consensus 73 ~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L------~~~~-----~~~~~~G~i~l~~~ 120 (121)
T cd04054 73 LSRDDVIGKVSLTREVISAHPRGIDGWMNL------TEVD-----PDEEVQGEIHLELS 120 (121)
T ss_pred CCCCCEEEEEEEcHHHhccCCCCCCcEEEC------eeeC-----CCCccccEEEEEEE
Confidence 987 99999999998886432 23344444 3211 11346799988764
No 150
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.57 E-value=1.5e-14 Score=137.33 Aligned_cols=100 Identities=24% Similarity=0.429 Sum_probs=82.7
Q ss_pred cceeeccccccccccCCC----------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeE
Q psy7848 628 RALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTL 697 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~----------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L 697 (754)
|.|.|.|++|+||...+. .|.+||||++++. +....+|+++++|+||.|||+|.|.+. ....|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l 76 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---DTHIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL 76 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---CEEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence 679999999999998876 3689999999993 234579999999999999999999995 34789
Q ss_pred EEEEEEccCCCCCceeEEEEEecCCC----CchhhhHHhhh
Q psy7848 698 VITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHWVDMM 734 (754)
Q Consensus 698 ~ItV~D~d~~~~ddfLG~v~L~l~s~----ge~~~hW~~ll 734 (754)
.|.|||++.++.+++||.+.|++... +...+.|++|.
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 99999999988999999999998752 23345555553
No 151
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.57 E-value=3.4e-14 Score=138.51 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=95.7
Q ss_pred EEEEEEEecC--CCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc------ccCcceEEE
Q psy7848 487 LHVTLHRAKG--LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET------DLSLQSLHI 558 (754)
Q Consensus 487 L~VtIi~Arn--L~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~------el~~~~L~~ 558 (754)
..++|+.|++ |+..+.++.+||||++++..+.....+.||+++++|+||+|||.|.|. |... .+....|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEE
Confidence 4556666666 778888889999999998432334579999999999999999999995 6544 355688999
Q ss_pred EEeeCCCC-CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 559 LVLDDDKY-GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 559 sV~D~d~~-g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
+|||++.+ .. ++||++.|+|..+........+++|.. ......|+|.|.+..-.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-------------~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-------------GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-------------CCCCcCCEEEEEEEecC
Confidence 99999986 33 999999999999977766555666532 11356688888877643
No 152
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.57 E-value=7.9e-15 Score=138.28 Aligned_cols=99 Identities=19% Similarity=0.329 Sum_probs=84.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|++|++|...+.+|.+||||++++. ..+++|+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE----GESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC----CEEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECCCC
Confidence 5689999999999999999999999999983 457899999999999999999998752 257899999999987
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhh
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMM 734 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll 734 (754)
+ |+|||.+.+++........+|+.|.
T Consensus 76 ~-d~~lG~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 76 C-DEFLGQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred C-CCceEEEEEecccCCCcCceEEEcc
Confidence 5 8999999999987655555666664
No 153
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.57 E-value=2.8e-14 Score=135.40 Aligned_cols=115 Identities=24% Similarity=0.366 Sum_probs=94.1
Q ss_pred CCEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCc
Q psy7848 484 TCSLHVTLHRAKGLRAMDIH----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL 553 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~----------g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~ 553 (754)
.|.|.|+|++|++|...+.. +.+||||++.+.+ ....+|+++.+|.||.|||+|.|+ +. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~ 73 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTTE-VH----NG 73 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEEE-cC----CC
Confidence 47799999999999988863 6799999999952 245789999999999999999995 43 24
Q ss_pred ceEEEEEeeCCCCCC-ccceeeeecCcccCC--CCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 554 QSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 554 ~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~--~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..|.|.|||++.++. ++||++.++|.++.. ......|++|. ..|+|+|.+.|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------------CCcEEEEEEEEec
Confidence 789999999998877 999999999999886 34455566552 3699999988754
No 154
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.56 E-value=1.3e-14 Score=136.32 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=71.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|++|++|...+ ..||||.|.+ +..+.+|+++++ .||.|||+|.|.+. +. +..|.|.|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~----g~~k~kT~v~~~-~nP~WnE~F~F~~~--~~-~~~L~v~V~dkd~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV----QNVKSTTIAVRG-SQPCWEQDFMFEIN--RL-DLGLVIELWNKGLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE----CCEEeEeeECCC-CCCceeeEEEEEEc--CC-CCEEEEEEEeCCCc
Confidence 57999999999996543 4589999999 446889999877 49999999999984 33 34599999999976
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
.|||||.+.|+|.+.
T Consensus 71 -~DD~lG~v~i~L~~v 85 (127)
T cd08394 71 -WDTLVGTVWIPLSTI 85 (127)
T ss_pred -CCCceEEEEEEhHHc
Confidence 799999999999863
No 155
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.56 E-value=3e-14 Score=134.28 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=96.0
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-c
Q psy7848 491 LHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-D 569 (754)
Q Consensus 491 Ii~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-d 569 (754)
|+.|++|+. ..+.+||||+|++.. ..++|+++.++.||+|||+|.|. +.........|.|.|||++..+. +
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-----VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-----EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCc
Confidence 789999998 678899999999943 57899999999999999999995 43322456899999999999877 9
Q ss_pred cceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccccc
Q psy7848 570 FLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRA 629 (754)
Q Consensus 570 fLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g~ 629 (754)
+||++.++|.++..+.....|++|.. . ......|+|++.+.|.|..+.
T Consensus 74 ~iG~~~~~l~~l~~~~~~~~~~~L~~------~------~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 74 LIGSATVSLQDLVSEGLLEVTEPLLD------S------NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred eEEEEEEEhhHcccCCceEEEEeCcC------C------CCCcccEEEEEEEEEeCCCCc
Confidence 99999999999987766666666642 1 112346999999999987643
No 156
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.56 E-value=2e-14 Score=134.92 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=82.1
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|++|+||+.++.+|.+||||++++. +...++|.++++++||.|||+|.|.+.. ...|.|+|||++.++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD---GGQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC---CccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence 378999999999999999999999999993 2458899999999999999999999963 579999999999877
Q ss_pred C--CceeEEEEEecCCCC---chhhhHHhh
Q psy7848 709 S--NDYLGCLELCCNSKG---DRLRHWVDM 733 (754)
Q Consensus 709 ~--ddfLG~v~L~l~s~g---e~~~hW~~l 733 (754)
+ ++|||.+.|++...- .....|+.|
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l 103 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDL 103 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEe
Confidence 5 579999999988622 123446555
No 157
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=1.2e-14 Score=135.78 Aligned_cols=89 Identities=31% Similarity=0.395 Sum_probs=76.6
Q ss_pred eccccccccccCCCCCCCCceEEEEecCCC--Cc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC--
Q psy7848 632 VNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY-- 706 (754)
Q Consensus 632 V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~-- 706 (754)
...++|++|+.++..|.+||||+|++.+.. .. ..++|.++++|+||+|||+|.|.+...+ ...|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~ 81 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCc
Confidence 356899999999999999999999998654 22 3789999999999999999999875433 3579999999997
Q ss_pred --CCCCceeEEEEEecCC
Q psy7848 707 --GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 --~~~ddfLG~v~L~l~s 722 (754)
++++++||.+.+++..
T Consensus 82 ~~~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 82 KDLSDHDFLGEAECTLGE 99 (120)
T ss_pred CCCCCCcEEEEEEEEHHH
Confidence 8899999999999985
No 158
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.55 E-value=1e-14 Score=133.81 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=80.1
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCC--cceeeeeeecCCCCCccceeEEEEeecCccC----CCeEEEEEEE
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWD 703 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~--k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~----~~~L~ItV~D 703 (754)
+.+.+++|++|+.++..|.+||||+|++.+..+ ...++|+++++++||+|| +|.|.+. ++. ...|.|+|||
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEE
Confidence 356677999999999999999999999876532 237999999999999999 6777642 332 4799999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHh
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVD 732 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ 732 (754)
++.+++|++||.+.+++...-.....++.
T Consensus 79 ~d~~~~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 79 YDSSGKHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred eCCCCCCcEEEEEEEEHHHHhcCCCceEE
Confidence 99999999999999999865433333333
No 159
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.54 E-value=3.2e-14 Score=130.99 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=80.2
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEee-eeccccCcceEEEEEe
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS-VSETDLSLQSLHILVL 561 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~-I~~~el~~~~L~~sV~ 561 (754)
....|+|+|++|++|. .+.+||||+|.+.+ .+.+|+++.++.||.|||+|.|.. .+..++....|.|.||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGG-----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECC-----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 4567999999999998 57899999999964 567899999999999999999953 2234455678999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCc
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHIS 586 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~ 586 (754)
|++.++. ++||++.|+|.++.....
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~ 98 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPD 98 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCC
Confidence 9999887 999999999999866533
No 160
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.54 E-value=5.8e-14 Score=131.82 Aligned_cols=117 Identities=26% Similarity=0.407 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|+|+|++|++|+.++..+.+||||++++.+ ...++|+++.+++||.|||.|.|. +.. ...|.|.|||++.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKF 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCC
Confidence 789999999999999889999999999953 367899999999999999999995 433 47999999999987
Q ss_pred CC---ccceeeeecCcccCCCCcc-ceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 567 GH---DFLGEARFPLNRLRPHISR-DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 567 g~---dfLGev~I~L~~L~~~~~~-~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
+. +|||++.|++.++...... ..|++|.. ... .......|+|.+.+
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~------~~~---~~~~~~~G~v~~~~ 122 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK------LKK---SDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCCceEeEEEEEHHHccccCCCccceeEeec------CCC---CCCceEeeEEEEEe
Confidence 63 6999999999998754332 34444432 110 01234578888775
No 161
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=7.1e-14 Score=133.92 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=84.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCc---------ceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEE
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---------RKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI 699 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k---------~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~I 699 (754)
+.|.+++|+||+ ++..|.+||||++++.++... .++||.++++++||+| ||+|.|.+.. +..|.|
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v 77 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLEI 77 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEEE
Confidence 568899999998 677899999999999765432 4799999999999999 9999999853 358999
Q ss_pred EEEEccCCCC---CceeEEEEEecCCCCchhhhHHhhhcCC-CcceeeEEeecCCC
Q psy7848 700 TVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKP 751 (754)
Q Consensus 700 tV~D~d~~~~---ddfLG~v~L~l~s~ge~~~hW~~ll~~P-~~~ie~Wh~L~~~~ 751 (754)
+|||++..+. +++||.+.|++.+ +++.+ ......|++|..+-
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~----------l~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQR----------LLERHAIGDQELSYTLGRRT 123 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHH----------hcccccCCceEEEEECCcCC
Confidence 9999875443 7999999999875 22222 22356777776554
No 162
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.53 E-value=4e-14 Score=129.11 Aligned_cols=88 Identities=32% Similarity=0.394 Sum_probs=77.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+..+..+.+||||+|++.+ ..++|+++.+|.||+|||.|.|. +.. .....|.|.|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----TTQKSKVKERTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-----EEEeCccccCCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC-
Confidence 889999999999999889999999999953 78899999999999999999995 433 234689999999987
Q ss_pred CCccceeeeecCcccCCC
Q psy7848 567 GHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~ 584 (754)
+++||++.|+|.++...
T Consensus 73 -~~~iG~~~i~l~~l~~~ 89 (105)
T cd04050 73 -GKSLGSLTLPLSELLKE 89 (105)
T ss_pred -CCccEEEEEEHHHhhcc
Confidence 68999999999998754
No 163
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.53 E-value=3e-14 Score=134.28 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=82.6
Q ss_pred cccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCcee
Q psy7848 634 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL 713 (754)
Q Consensus 634 V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfL 713 (754)
|+.|+||+. ..|.+||||+|++ +..+++|++++++.||+|||+|.|.+.........|.|+|||++.+++|++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 789999988 6788999999999 3447899999999999999999999864434578999999999999999999
Q ss_pred EEEEEecCCC--CchhhhHHhhhcCCCc
Q psy7848 714 GCLELCCNSK--GDRLRHWVDMMKYPDH 739 (754)
Q Consensus 714 G~v~L~l~s~--ge~~~hW~~ll~~P~~ 739 (754)
|.+.|++... +.....|+.|....+.
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~~~~ 103 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDSNGR 103 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCCCCC
Confidence 9999999863 3445567777644343
No 164
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.52 E-value=1e-13 Score=130.95 Aligned_cols=114 Identities=31% Similarity=0.470 Sum_probs=88.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+..|..+.+||||+|++.+ ...+|+++.+++||+|||.|.|. +... ...|.|.|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-----TKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-----EeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCC
Confidence 5899999999999999889999999999843 56799999999999999999984 3221 3689999999985
Q ss_pred C-----------CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 566 Y-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 566 ~-----------g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
. +. ++||++.+++.++... ...|+.|... . .....+|+|++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~------~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKR------T-----DKSAVSGAIRLHI 127 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHccCC--CCeEEECccC------C-----CCCcEeEEEEEEC
Confidence 3 34 9999999999987543 3455555421 1 1134689998764
No 165
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.52 E-value=4.5e-14 Score=130.99 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=72.5
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc----
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK---- 704 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~---- 704 (754)
|.|.|++|+||. |.+||||++++.+... ..+.||+++++|+||+|||+|.|.+. ....|.|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEccccc
Confidence 679999999995 5699999999976544 34899999999999999999999985 256999999998
Q ss_pred ---cCCCCCceeEEEEEecCC
Q psy7848 705 ---DYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 705 ---d~~~~ddfLG~v~L~l~s 722 (754)
|.++.|++||...|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 577889999998888864
No 166
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.52 E-value=2.5e-14 Score=132.26 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=82.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+.. |.+||||++++. +...++|+++++ +||.|||+|.|.+...++....|.|.|||++....
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD---QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC---CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 78999999999876 789999999993 234689999988 99999999999998777666789999999998878
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhc
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMK 735 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~ 735 (754)
+.++|.+.|+....+...++|++|..
T Consensus 75 ~~~~g~v~l~~~~~~~~~~~w~~L~~ 100 (117)
T cd08383 75 DIVIGKVALSKLDLGQGKDEWFPLTP 100 (117)
T ss_pred eeEEEEEEecCcCCCCcceeEEECcc
Confidence 88999988887666666666666653
No 167
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.52 E-value=5.6e-14 Score=134.62 Aligned_cols=106 Identities=30% Similarity=0.392 Sum_probs=86.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec------------cccCcc
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE------------TDLSLQ 554 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~------------~el~~~ 554 (754)
|.|.|++|++|+.+ ..+.+||||+|++..+ .....++|+++.++.||.|||.|.|..... .++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 67999999999998 7889999999999753 234778999999999999999999963332 244668
Q ss_pred eEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 555 SLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 555 ~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.|.|.|||++.++. +|||++.|+|.++........|+.|.
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecC
Confidence 99999999999876 99999999999987554444444443
No 168
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=6.6e-14 Score=131.26 Aligned_cols=103 Identities=29% Similarity=0.419 Sum_probs=84.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeecccc-CcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDL-SLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el-~~~~L~~sV~D 562 (754)
|.|.|+|++|++|+..+..+.+||||+|.+.. ...+|+++.+ +.||+|||.|.|. +..... ....|.|.|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-----EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEE
Confidence 57999999999999998889999999999843 5678888874 8999999999995 443322 34789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++.++. ++||++.|+|.++........|+.|
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 999877 9999999999999776555445444
No 169
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.51 E-value=1e-13 Score=127.88 Aligned_cols=88 Identities=38% Similarity=0.601 Sum_probs=78.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|+..+..|.+||||+|++.+ ...++|+++.+++||.|||+|.|.+... ....|.|+|||++..+.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG---EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC---CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence 578999999999999889999999999942 3468999999999999999999998632 46789999999999989
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
+++||.+.+++..
T Consensus 76 ~~~iG~~~~~l~~ 88 (115)
T cd04040 76 DDLLGSAYIDLSD 88 (115)
T ss_pred CCceEEEEEEHHH
Confidence 9999999999875
No 170
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.50 E-value=8.2e-14 Score=130.71 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=78.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCcc--CCCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL--~~~~L~ItV~D~d 705 (754)
.|.|.|++|++|+..+..+.+||||+|++.+ ..+++|++.. ++.||.|||.|.|.+....+ ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 3789999999999999889999999999953 2478898865 58999999999999865432 3578999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.|++||.+.|++..
T Consensus 78 ~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 78 PSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCCCCCcEEEEEEEHHH
Confidence 98899999999999875
No 171
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=5e-14 Score=137.06 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 486 SLHVTLHRAKGLRAMDIHG--------------TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g--------------~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
.|.|+|++|++|+.+|..+ .+||||+|.+.+ .+.+|+++++++||+|||+|.|. +.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----QKVKTSVKKNSYNPEWNEQIVFP-EMFPPL 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----EeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence 3789999999999998543 689999999964 56799999999999999999995 322222
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
...|.|+|||+|..+. ++||.+.|+|.++...
T Consensus 75 -~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 75 -CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred -CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 3689999999999876 9999999999998764
No 172
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.50 E-value=7.4e-14 Score=136.12 Aligned_cols=98 Identities=38% Similarity=0.608 Sum_probs=82.3
Q ss_pred EEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC------------------------ceEEEeeeecCCCC
Q psy7848 479 TYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT------------------------SHRLRTKTCLRTIN 534 (754)
Q Consensus 479 ~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~------------------------~~~~rTkvi~~TlN 534 (754)
.+.+..+.|.|+|++|+||..+|..|.+||||+|.+.+.... ....+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 344566889999999999999999999999999999753211 13589999999999
Q ss_pred CeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccC
Q psy7848 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582 (754)
Q Consensus 535 P~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~ 582 (754)
|.|||+|.|. + .++....|.|.|||++ ++|||++.|++.++.
T Consensus 102 P~WnE~F~f~-v--~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~ 143 (153)
T cd08676 102 PVWNETFRFE-V--EDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP 143 (153)
T ss_pred CccccEEEEE-e--ccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC
Confidence 9999999994 3 3334578999999998 789999999999987
No 173
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.49 E-value=1e-13 Score=131.04 Aligned_cols=91 Identities=26% Similarity=0.296 Sum_probs=77.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-+.|.|+|++|++|+. +..+.+||||+|++.+ .+++|++++++.||+|||+|.|..+... ....|.|+|||+
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-----~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~ 98 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-----QEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDR 98 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-----ccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeC
Confidence 4678999999999984 6778899999999953 4889999999999999999998532221 357999999999
Q ss_pred CCCCC-ccceeeeecCcccC
Q psy7848 564 DKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~ 582 (754)
|.++. ++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 99977 99999999999664
No 174
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.49 E-value=1.7e-13 Score=127.81 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=78.6
Q ss_pred cceeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|.|++|+||+..+ ..+.+||||++.+..+ ...++|+++.+++||.|||.|.|.+. .....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 67899999999999765 4567999999999542 35899999999999999999999986 235789999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy7848 707 GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s 722 (754)
.+.|++||.+.+++..
T Consensus 77 ~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 77 KRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCCceeEEEEEEHHH
Confidence 9899999999999876
No 175
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=1.5e-13 Score=129.35 Aligned_cols=92 Identities=28% Similarity=0.342 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|++|+.+|..+.+||||+|++.+. ....+|.++.+++||+|||+|.|. +. ......|.|+|||+|.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~--~~~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-AT--LPGNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ec--CCCCCEEEEEEEECCC
Confidence 37899999999999999999999999999642 234678889999999999999984 32 2234789999999999
Q ss_pred CCC-ccceeeeecCcccCC
Q psy7848 566 YGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~ 583 (754)
++. ++||++.|+|.+...
T Consensus 75 ~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCceeEEEEEeeccccc
Confidence 877 999999999997754
No 176
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.48 E-value=1.6e-13 Score=128.03 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=84.2
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEEeCCC--CCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC-
Q psy7848 489 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK- 565 (754)
Q Consensus 489 VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~--~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~- 565 (754)
...++|++|+..+..+.+||||+|++.+.. .....++|+++++++||+|||+|.|. +.... ...|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~ 80 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCC
Confidence 456899999999999999999999998753 33457899999999999999999984 33222 3689999999997
Q ss_pred ---CCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 566 ---YGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 566 ---~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++. ++||++.+++.+|.......+++.|
T Consensus 81 ~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 81 SKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred cCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 666 9999999999999877666666666
No 177
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=2.6e-13 Score=131.30 Aligned_cols=90 Identities=30% Similarity=0.512 Sum_probs=79.7
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|+||+..+. +.+||||++.+.. ...+|+++.++.||+|||+|.|. +... ...|.|.|||++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-----~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-----QKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKD 71 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-----EEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECC
Confidence 679999999999999887 8899999999953 78999999999999999999995 4322 578999999999
Q ss_pred CCCC-ccceeeeecCcccCCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~ 584 (754)
.++. ++||++.|++.++...
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhh
Confidence 9987 9999999999998654
No 178
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2.9e-13 Score=124.89 Aligned_cols=101 Identities=35% Similarity=0.479 Sum_probs=86.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|++|+..+..+.+||||+|.+.+ ...++|+++.++.||.|||+|.|. +... ....|.|.|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----CcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCC
Confidence 579999999999999888999999999953 355799999999999999999984 3322 357899999999998
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+. ++||++.+++.++..+.....|++|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 77 99999999999998776667777764
No 179
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.47 E-value=3.5e-13 Score=129.09 Aligned_cols=93 Identities=27% Similarity=0.411 Sum_probs=77.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC--------ceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceE
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT--------SHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSL 556 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~--------~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L 556 (754)
.+.|++++|+||+ ++..|.+||||++.+.++... ...++|+++.+++||+| ||.|.|. +.. ...|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEE
Confidence 4679999999998 777899999999999875432 35789999999999999 9999995 332 3589
Q ss_pred EEEEeeCCCCC----CccceeeeecCcccCCC
Q psy7848 557 HILVLDDDKYG----HDFLGEARFPLNRLRPH 584 (754)
Q Consensus 557 ~~sV~D~d~~g----~dfLGev~I~L~~L~~~ 584 (754)
.|+|||++..+ +++||++.|+|.+|...
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 99999987543 48999999999998755
No 180
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.47 E-value=3.1e-13 Score=126.98 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=78.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+..+ ..||||.|.+.. .+.+|+++.+ .||+|||+|.|+ + .+.. ..|.|.|||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-----~k~kT~v~~~-~nP~WnE~F~F~-~--~~~~-~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-----VKSTTIAVRG-SQPCWEQDFMFE-I--NRLD-LGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-----EEeEeeECCC-CCCceeeEEEEE-E--cCCC-CEEEEEEEeCC
Confidence 46999999999997644 459999999953 6789999887 599999999995 3 3333 44999999999
Q ss_pred CCCCccceeeeecCcccCCCCccceEeecccCCCCCcc
Q psy7848 565 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE 602 (754)
Q Consensus 565 ~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~ 602 (754)
.+.++|||++.|+|.++...... --..||+|.++
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~~----~~~~Wy~L~~~ 102 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNEE----GPGEWLTLDSE 102 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCCC----CCCccEecChH
Confidence 88779999999999998765332 01346666543
No 181
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.46 E-value=6.8e-13 Score=122.63 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=85.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+.. +.+||||++++.. ...++|+++.+ .||.|||+|.|. +...++....|.|.|||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccC
Confidence 78999999999976 7899999999953 24578999998 999999999994 565555567899999998876
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.. .++|.+.|....+ +...+.|++|. +... .....|+|+|.+.|
T Consensus 73 ~~~~~~g~v~l~~~~~--~~~~~~w~~L~------~~~~-----~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 DRDIVIGKVALSKLDL--GQGKDEWFPLT------PVDP-----DSEVQGSVRLRARY 117 (117)
T ss_pred CCeeEEEEEEecCcCC--CCcceeEEECc------cCCC-----CCCcCceEEEEEEC
Confidence 65 7777766554433 33444455543 2211 13578999999887
No 182
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=3.8e-13 Score=125.93 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=83.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|++|+..+..+.+||||+|++.. ....+|+++.++.||.|||.|.|+ +... ...|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG----IVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC----EEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECC
Confidence 57999999999999999889999999999842 357899999999999999999884 3322 368999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEee
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLN 592 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~ 592 (754)
.++. ++||++.++|.++... ..+.|+.
T Consensus 73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~ 100 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLIKK-NEDGKYV 100 (120)
T ss_pred CCCCCCeeeEEEEeHHHhhCC-CCCceEE
Confidence 9887 8999999999998765 3333333
No 183
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.45 E-value=2.3e-13 Score=129.34 Aligned_cols=93 Identities=29% Similarity=0.413 Sum_probs=80.9
Q ss_pred ceeeccccccccccCC--CCC--CCCceEEEEecCCCCcceeeeeeecCCCC--CccceeEEEEeec-------------
Q psy7848 629 ALIVNLIKCTNLIPMD--SNG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI------------- 689 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d--~~G--~sDPYVKV~L~~~~~k~k~KT~v~kkTlN--P~wNEtF~F~V~~------------- 689 (754)
.|+|.|++|+|++.++ ..| .+|||||++|.+. ...+++|.|.++++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 3789999999976544 366 4999999999865 345899999999999 9999999999776
Q ss_pred --------CccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 690 --------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 690 --------~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+.+....|.|+|||+|.+++|++||.++|++..
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~ 120 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSI 120 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhh
Confidence 567789999999999999999999999999885
No 184
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=4.9e-13 Score=122.65 Aligned_cols=99 Identities=25% Similarity=0.313 Sum_probs=79.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecCCCCCeeceeEEEeeeeccccC----cceEEEEEe
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS----LQSLHILVL 561 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~----~~~L~~sV~ 561 (754)
+.+.+++|++|+.+|..+.+||||+|++.+.. .....++|+++++++||+|| +|.|. ..++. ...|.|+||
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~ 77 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVY 77 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEE
Confidence 34667899999999999999999999997643 33457899999999999999 67663 33332 479999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCccce
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHISRDL 589 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~~~~ 589 (754)
|++.+++ ++||++.+++.+|...+..++
T Consensus 78 d~d~~~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 78 DYDSSGKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred EeCCCCCCcEEEEEEEEHHHHhcCCCceE
Confidence 9999987 999999999999975544433
No 185
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.43 E-value=4.7e-13 Score=125.60 Aligned_cols=96 Identities=27% Similarity=0.379 Sum_probs=80.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeecccc--CcceEEEEEee
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDL--SLQSLHILVLD 562 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el--~~~~L~~sV~D 562 (754)
.|.|+|++|++|+..+..+.+||||+|++.+ ..+.+|+++. ++.||.|||.|.|. +....+ ....|.|.|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEE
Confidence 3889999999999999889999999999964 2567898875 58999999999994 444421 35789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHIS 586 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~ 586 (754)
++.++. ++||++.|+|.++.....
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhcccC
Confidence 998776 999999999999886644
No 186
>PLN03008 Phospholipase D delta
Probab=99.43 E-value=4.8e-13 Score=156.61 Aligned_cols=125 Identities=21% Similarity=0.326 Sum_probs=101.5
Q ss_pred CCEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEeCCCCCc
Q psy7848 484 TCSLHVTLHRAKGLRAMDI------------------------------------------HGTSDPFCKLNLVPLTKTS 521 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~------------------------------------------~g~sDPYVkv~Llp~~~~~ 521 (754)
.|.|.|+|.+|++|+.||. .+.+||||+|.|.. .
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~----~ 88 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ----A 88 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC----c
Confidence 4889999999999986432 23679999999942 3
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 601 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~ 601 (754)
...||+++.++.||+|||+|.|+ +... ...|.|.|||+|.++.++||++.|||.+|..+...+.|++|.....
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--- 161 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG--- 161 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC---
Confidence 56799999999999999999995 4442 3689999999999999999999999999999888888888864211
Q ss_pred cccccccccccccceeEEeeecccc
Q psy7848 602 EEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 602 ~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
......|+|+|+|.|.|.
T Consensus 162 -------kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 -------KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred -------CCCCCCcEEEEEEEEEEc
Confidence 124567899999999764
No 187
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.42 E-value=4.7e-13 Score=125.53 Aligned_cols=104 Identities=25% Similarity=0.400 Sum_probs=84.7
Q ss_pred ceeeccccccccccCC--CCCCCCceEEEEecCCCC--cceeeeeeecCCC-CCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d--~~G~sDPYVKV~L~~~~~--k~k~KT~v~kkTl-NP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
.|.|.|++|+||+.++ ..+..||||++++.+... ..++||+++.++. ||.|||+|.|.+...+ ...|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEEe
Confidence 6899999999999988 578899999999976543 3489999988776 9999999999987433 3579999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKY 736 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~ 736 (754)
++.. ++++||.+.+++.....+. .|+.|+..
T Consensus 81 ~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~~ 111 (128)
T cd00275 81 EDSG-DDDFLGQACLPLDSLRQGY-RHVPLLDS 111 (128)
T ss_pred CCCC-CCcEeEEEEEEhHHhcCce-EEEEecCC
Confidence 9988 8999999999998754333 45566543
No 188
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.41 E-value=1.7e-12 Score=125.38 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=93.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|.|++|++|++++ +|||.|.|.. ....||+++.++.||.|+|.|.|+... ....|.|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~----~~vaRT~v~~~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK----TLYARTTSKLKTDTLFWGEHFEFSNLP----PVSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC----EEEEEEEEEcCCCCCcceeeEEecCCC----cccEEEEEEEEcc
Confidence 67999999999999875 8999999963 355799999999999999999995221 2367999998765
Q ss_pred C-C----CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 565 K-Y----GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 565 ~-~----g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
. . ++++||.+.||+.++..+...+-|+++...... .+..+.......+.|+|+++|.+.
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~---~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN---GKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC---CccccccccCCCCEEEEEEEEEEe
Confidence 3 2 338999999999999977676667666532211 111111223556899999999654
No 189
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.41 E-value=8.8e-13 Score=122.39 Aligned_cols=83 Identities=24% Similarity=0.550 Sum_probs=69.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC---
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD--- 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~--- 563 (754)
|.|+|++|+||+ +.+||||++++.+.+....+.+|+++.+|+||+|||+|.|. +. ...+|+|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~----~s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LE----GSQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eC----CCCEEEEEEEEcccc
Confidence 689999999996 45899999999875443478999999999999999999984 43 257999999998
Q ss_pred ----CCCCC-ccceeeeecCc
Q psy7848 564 ----DKYGH-DFLGEARFPLN 579 (754)
Q Consensus 564 ----d~~g~-dfLGev~I~L~ 579 (754)
|..+. ++||.+.|.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 45566 99988888776
No 190
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.40 E-value=1.5e-12 Score=122.64 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=74.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|..|+ |...+..+.+||||+|++. +..+++|+++++++||+|||+|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~---~~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~~ 74 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVD---GQPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTLK 74 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEEC---CcccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCCC
Confidence 6889999998 6555668889999999993 2247899999999999999999999852 468999999999999
Q ss_pred CCceeEEEEEecCC
Q psy7848 709 SNDYLGCLELCCNS 722 (754)
Q Consensus 709 ~ddfLG~v~L~l~s 722 (754)
.+++||.+.+++..
T Consensus 75 ~~~~iG~~~i~l~~ 88 (125)
T cd04021 75 ADVLLGEASLDLSD 88 (125)
T ss_pred CCcEEEEEEEEHHH
Confidence 99999999999874
No 191
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.40 E-value=7.2e-13 Score=113.97 Aligned_cols=85 Identities=36% Similarity=0.586 Sum_probs=75.0
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+..+..||||++++..... ..++|.+++++.||.|||+|.|.+...+.. .|.|.|||++.++.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCCC
Confidence 689999999999988888999999999975433 579999999999999999999998755554 49999999999999
Q ss_pred CceeEEEE
Q psy7848 710 NDYLGCLE 717 (754)
Q Consensus 710 ddfLG~v~ 717 (754)
|++||.+.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999874
No 192
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.39 E-value=4.1e-12 Score=119.18 Aligned_cols=121 Identities=25% Similarity=0.397 Sum_probs=90.7
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEEeCCCC-CceEEEeeeecCCC-CCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 486 SLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d--~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~Tl-NP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
.|+|+|++|+||+..+ ..+..||||++++.+... ...+.+|+++.++. ||+|||+|.|. +... ....|.|.||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~--~~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVP--ELAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCC--CeEEEEEEEE
Confidence 5899999999999988 578899999999976443 44788999988765 99999999995 3322 2357999999
Q ss_pred eCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 562 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 562 D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|++..++++||++.++|.+|..+ ..++.|.. .. ......|.|.+.+.+
T Consensus 80 d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~------~~-----~~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSGDDDFLGQACLPLDSLRQG---YRHVPLLD------SK-----GEPLELSTLFVHIDI 127 (128)
T ss_pred eCCCCCCcEeEEEEEEhHHhcCc---eEEEEecC------CC-----CCCCcceeEEEEEEE
Confidence 99988449999999999999543 23344432 10 112456888887754
No 193
>KOG1326|consensus
Probab=99.37 E-value=5.3e-13 Score=155.48 Aligned_cols=236 Identities=24% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
....+|.|++|-+|.+.|.+|.+||||+|.++. ....-++..+.+|+||+|++.|.+ .......+.|.+.|||+
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel---~~~lp~ek~l~v~vyd~ 685 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFEL---ECLLPFEKDLIVEVYDH 685 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHh---hcccchhhcceeEEEEe
Confidence 356779999999999999999999999999964 223356778999999999999876 22333448899999999
Q ss_pred CCCCC-ccceeeeecCcccCCC-----CccceEee---cccCCCCCcc--------------------c---ccc-----
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPH-----ISRDLCLN---LCKHYPVPRE--------------------E---EVW----- 606 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~-----~~~~~~~~---L~~~~~l~~~--------------------~---~~~----- 606 (754)
|.++. +.||+..|+|..=-.. ......++ ...|...... . -.+
T Consensus 686 D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~ 765 (1105)
T KOG1326|consen 686 DLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESD 765 (1105)
T ss_pred ecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhh
Confidence 99987 9999999998752110 00000000 0011100000 0 000
Q ss_pred --------------------------------------------ccccccccceeEEeeecccc---------------c
Q psy7848 607 --------------------------------------------GEEECWQHGKIFLTLCFSTK---------------K 627 (754)
Q Consensus 607 --------------------------------------------~~~~~~~~GeL~VsL~y~p~---------------~ 627 (754)
.......+|++.+-+.+.|. .
T Consensus 766 ~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~ 845 (1105)
T KOG1326|consen 766 IYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKK 845 (1105)
T ss_pred hhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhh
Confidence 00112345555555544432 2
Q ss_pred cceeeccccccccccCCCCC----CCCceEEEEecCCCCcceeeeeeecCCC----CCccceeEEEEe-ecCccC-----
Q psy7848 628 RALIVNLIKCTNLIPMDSNG----FSDPFIKLYLKPDLHKRKYKTGVKWKTL----NPIFNEEFAIET-KITELS----- 693 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G----~sDPYVKV~L~~~~~k~k~KT~v~kkTl----NP~wNEtF~F~V-~~~dL~----- 693 (754)
..|+|.|..-.++...|.++ .+|.||+..+.++. ..+.+|.+.++++ |-.|.-.|.|+. +++++.
T Consensus 846 ~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk 924 (1105)
T KOG1326|consen 846 YELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK 924 (1105)
T ss_pred eeEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence 67889888888877666543 48999999997552 3477888877766 444555555542 222222
Q ss_pred -------------CCeEEEEEEEccCCCCCceeEEEEEecCCCCch
Q psy7848 694 -------------KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR 726 (754)
Q Consensus 694 -------------~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~ 726 (754)
-..|.|.|||.|.++.|+|||-.+|+|+.....
T Consensus 925 e~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 925 EYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred hhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence 146999999999999999999999999864433
No 194
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.35 E-value=6.7e-12 Score=118.27 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=76.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.|+|+.|+ |...+..+.+||||+|++.. ....+|+++.++.||+|||.|.|+ +.. ...|.|.|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~----~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG----QPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC----cccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCC
Confidence 46999999998 65555578899999999953 147899999999999999999985 432 368999999999
Q ss_pred CCCC-ccceeeeecCcccCCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~ 584 (754)
..+. ++||++.++|.++...
T Consensus 72 ~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 72 TLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCCCcEEEEEEEEHHHhHhh
Confidence 9877 9999999999998754
No 195
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.35 E-value=4.2e-12 Score=117.10 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCccc
Q psy7848 502 IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 581 (754)
Q Consensus 502 ~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L 581 (754)
.+|.+||||+|.+.+ ....+|+++.++.||+|||.|.|. +. +.....|.|.|||++.+++++||++.|+|.++
T Consensus 9 ~~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCCCCCeEEEEEecHHHH
Confidence 468899999999952 246799999999999999999984 33 23457899999999999449999999999998
Q ss_pred CCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 582 RPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 582 ~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
...... ...|++|.. ...|+|++++.|.|
T Consensus 82 ~~~~~~-----~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSV-----GQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred Hhhhhc-----cceeEECCC----------CCCCEEEEEEEEec
Confidence 543111 233444431 35799999999976
No 196
>KOG1328|consensus
Probab=99.31 E-value=8.9e-13 Score=148.54 Aligned_cols=111 Identities=34% Similarity=0.539 Sum_probs=100.1
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc---ceeeeeeecCCCCCccceeEEEEee
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k---~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
...|.+.|...|......|.|.|+.|+++.+.|.||.|||||.|.|.|...- ...+|.|+++|+||+|+|+|+|.|+
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence 3568899999999999999999999999999999999999999999875422 2789999999999999999999998
Q ss_pred cCccC--CCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 689 ITELS--KQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 689 ~~dL~--~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
++... ..+|.++|+|+|.+..|||-|.+-|.++.
T Consensus 1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred ccccccccceEEEEeeccceecccccchHHHHhhCC
Confidence 76654 57899999999999999999999999885
No 197
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.30 E-value=6.5e-12 Score=115.82 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=68.2
Q ss_pred CCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 644 DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 644 d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
..+|.+||||+|++. +...++|++++++.||.|||.|.|.+. +.....|.|.|||++.+ .+++||.+.|+|...
T Consensus 8 ~~~G~~dPYv~v~v~---~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 8 SKTGLLSPYAELYLN---GKLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCCCCceEEEEEC---CEEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 357889999999993 224689999999999999999999985 33467899999999998 899999999998752
Q ss_pred ---CchhhhHHhhhc
Q psy7848 724 ---GDRLRHWVDMMK 735 (754)
Q Consensus 724 ---ge~~~hW~~ll~ 735 (754)
+.....|+.|..
T Consensus 82 ~~~~~~~~~w~~L~~ 96 (111)
T cd04052 82 IDATSVGQQWFPLSG 96 (111)
T ss_pred HhhhhccceeEECCC
Confidence 222344555543
No 198
>PLN03008 Phospholipase D delta
Probab=99.26 E-value=6.6e-12 Score=147.21 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CC
Q psy7848 647 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KG 724 (754)
Q Consensus 647 G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~g 724 (754)
+.+||||+|.|. +.++.||+++++++||+|||+|.|.+.. . ...|.|+|||+|.++ +++||.+.|++.. .|
T Consensus 75 ~tSDPYV~I~Lg---~~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVP---QATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEEC---CcceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence 468999999992 2346799999999999999999999864 2 468999999999997 5899999999986 45
Q ss_pred chhhhHHhhhcCCCcce
Q psy7848 725 DRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 725 e~~~hW~~ll~~P~~~i 741 (754)
+..+.|++|+..-+++.
T Consensus 148 e~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 148 ERISGWFPVLGASGKPP 164 (868)
T ss_pred CceEEEEEccccCCCCC
Confidence 56667777776654433
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.26 E-value=2.5e-11 Score=104.31 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=72.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+..+..+..||||++.+.+... ..++|+++.++.+|.|||+|.|. +...+. ..|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence 789999999999988888999999999986443 67999999999999999999995 444444 3499999999999
Q ss_pred CC-ccceeee
Q psy7848 567 GH-DFLGEAR 575 (754)
Q Consensus 567 g~-dfLGev~ 575 (754)
+. ++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 96 9999974
No 200
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.25 E-value=1.4e-11 Score=119.04 Aligned_cols=97 Identities=16% Similarity=0.278 Sum_probs=74.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
..|.|.|++|++|++++ |+||.|.| ++. ..||+++.++.||.|||.|.|...+. -..|.|.||+.+.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccC
Confidence 57899999999999865 79999999 344 56999999999999999999975322 2679999986552
Q ss_pred -CC---CCceeEEEEEecCC--CCchhhhHHhhhcC
Q psy7848 707 -GK---SNDYLGCLELCCNS--KGDRLRHWVDMMKY 736 (754)
Q Consensus 707 -~~---~ddfLG~v~L~l~s--~ge~~~hW~~ll~~ 736 (754)
.+ ++.+||.|.|++.. .+...+.||+++..
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 22 57899999999874 33344445444443
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=7.6e-12 Score=158.66 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=85.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|+|++|.||. +..|.+||||++.+.. ..++||++++++.||+|||+|+|.+.... .+..|.|+|||+|.+
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~---~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN---GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNTF 2053 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECC---CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEecCcc
Confidence 89999999999997 5578899999999942 23779999999999999999998774221 246799999999999
Q ss_pred CCCceeEEEEEecCC--CCchhhhHHhhhc
Q psy7848 708 KSNDYLGCLELCCNS--KGDRLRHWVDMMK 735 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s--~ge~~~hW~~ll~ 735 (754)
++| .||.+.|++.. .+..+..||.|..
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCc
Confidence 654 89999999987 4667888999885
No 202
>KOG0905|consensus
Probab=99.23 E-value=6.6e-12 Score=147.51 Aligned_cols=111 Identities=26% Similarity=0.354 Sum_probs=101.6
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
.+..|+|.+++.|. ++.|.|.|..|++|+-...+..+|||||.||.|+..+. |+||+++++|.||.|||...|. ++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 45678999999997 79999999999999877778889999999999998775 9999999999999999999998 77
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
.+.+....|.++||..+.+..|.|||++.|+|...
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhc
Confidence 77888899999999999999999999999998864
No 203
>KOG1326|consensus
Probab=99.23 E-value=2.9e-12 Score=149.38 Aligned_cols=87 Identities=28% Similarity=0.462 Sum_probs=75.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
++|.|++|-+|.+.|.+|.+||||++.+ +++ .-++..+.+|+||+|++-|++... ......|+|.|||+|.+
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~l----Gk~~~~d~~~yip~tlnPVfgkmfel~~~--lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLL----GKKRTLDRAHYIPNTLNPVFGKMFELECL--LPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeee----ccchhhhhhhcCcCCCCcHHHHHHHhhcc--cchhhcceeEEEEeecc
Confidence 4488999999999999999999999999 444 467778999999999998888753 33468899999999999
Q ss_pred CCCceeEEEEEecCC
Q psy7848 708 KSNDYLGCLELCCNS 722 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s 722 (754)
+.|+.||+..+++..
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999874
No 204
>KOG0905|consensus
Probab=99.19 E-value=1.8e-11 Score=143.90 Aligned_cols=124 Identities=26% Similarity=0.398 Sum_probs=110.5
Q ss_pred CCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 468 ~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
++.-|+|.++++|. ++.|.|.|.-|++|+-...+..+||||+.||+|+..+..++||+++++|.||.|||.+.|.+++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 35678999999995 9999999999999987776778999999999999888889999999999999999999998888
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
.+.+..+.|+++||..+.+.. .|||.+.|+|.++...++..-|+.|
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 888888999999999999888 9999999999998776555444444
No 205
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.19 E-value=1e-10 Score=102.72 Aligned_cols=96 Identities=38% Similarity=0.469 Sum_probs=80.5
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|......+..+|||++.+.+.. ...++|+++.++.||.|||+|.|.+.... ...|.|+|||++..+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccC
Confidence 67899999999888776789999999996543 34789999999999999999999986433 7899999999998888
Q ss_pred CceeEEEEEecCCCCchhh
Q psy7848 710 NDYLGCLELCCNSKGDRLR 728 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~ 728 (754)
+.+||.+.+++.....+..
T Consensus 79 ~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CceeEEEEEEHHHcccCcc
Confidence 9999999999876444333
No 206
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.19 E-value=9.5e-11 Score=111.49 Aligned_cols=96 Identities=26% Similarity=0.356 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCCCCC--CCC--CCCcEEEEEEeCCCCCceEEEeeeecCCCC--CeeceeEEEeeeec-----------
Q psy7848 486 SLHVTLHRAKGLRAMD--IHG--TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN--PEFHEKLTFYSVSE----------- 548 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d--~~g--~sDPYVkv~Llp~~~~~~~~rTkvi~~TlN--P~WnE~f~F~~I~~----------- 548 (754)
.|+|.|.+|+|++..+ ..| .+||||++.|.+.. ..+++|.|.++++| |+||+.|.|. +..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~--~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE--EDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCc--ccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence 3899999999976554 356 49999999998752 47889999999999 9999999986 555
Q ss_pred ----------cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 549 ----------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 549 ----------~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+.+....|.|.|||.|.++. ++||++.++|..+...
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 55667999999999999988 9999999999987654
No 207
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.18 E-value=5e-11 Score=151.36 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=93.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-|.|.|+|++|.||. +..+.+||||++.+.. ..+.||++++++.||+|||+|.|. +... .....|+|+|||+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~-~~~p-~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWA-FDSP-PKGQKLHISCKSK 2050 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeee-ecCC-CCCCceEEEEEec
Confidence 488999999999998 4468899999999963 346789999999999999999972 2221 1236799999999
Q ss_pred CCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccce---eEEeeeccc
Q psy7848 564 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGK---IFLTLCFST 625 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~Ge---L~VsL~y~p 625 (754)
|.|+++.||.+.|+|.++..+.....|++| ..+ ....|+ |.|.+.+.+
T Consensus 2051 d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L------~~~--------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKSSLGKVTIQIDRVVMEGTYSGEYSL------NPE--------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCCCCceEEEEHHHHhcCceeeeeeec------Ccc--------cccCCCcceEEEEEEecC
Confidence 999889999999999998876555545444 321 235677 888777653
No 208
>KOG1011|consensus
Probab=99.14 E-value=3.7e-11 Score=133.85 Aligned_cols=106 Identities=26% Similarity=0.521 Sum_probs=93.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..++++|+.|.+|.+.|..|.+||||.+.+ ++.+++|+++...+||+|||.|.|+.... ...|.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecCccc
Confidence 568899999999999999999999999999 67799999999999999999999998533 57899999998842
Q ss_pred -----------CCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 708 -----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 708 -----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
.+|||||+..|.+.....+.+.||+|-+.-++.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdks 411 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKS 411 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchh
Confidence 579999999999999888999999998776553
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.13 E-value=2.5e-10 Score=99.46 Aligned_cols=102 Identities=37% Similarity=0.499 Sum_probs=84.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|......+..||||.+.+.+ ...++|.++.++.||.||+.|.|.+... ....|.|.|||++..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 568999999998877778899999999953 3578999999999999999999998642 46789999999998888
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+.+||.+.+++.... ........|++|
T Consensus 76 ~~~ig~~~~~l~~l~-----------~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELL-----------DSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhh-----------hcCCcCcceecC
Confidence 999999999987532 345556666654
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.04 E-value=1.4e-09 Score=95.38 Aligned_cols=93 Identities=34% Similarity=0.576 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|.|++|++|......+..+|||++++.+.. ....+|+++.++.||.|||+|.|+ +.... ...|.|+|||.+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRF 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCc
Confidence 78999999999988766788999999997532 257899999999999999999985 33222 68999999999988
Q ss_pred CC-ccceeeeecCcccCCC
Q psy7848 567 GH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~ 584 (754)
+. .+||.+.+++.++..+
T Consensus 77 ~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred cCCceeEEEEEEHHHcccC
Confidence 76 9999999999988654
No 211
>KOG1327|consensus
Probab=99.04 E-value=1.6e-09 Score=121.93 Aligned_cols=206 Identities=25% Similarity=0.313 Sum_probs=150.0
Q ss_pred CCCCCCCCCcEEEEEEeC--------------CCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 499 AMDIHGTSDPFCKLNLVP--------------LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 499 ~~d~~g~sDPYVkv~Llp--------------~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.....+|-|.+.... +.......+|.++.+.+||.|-+.|... .-.+. .+.|+|.++|-+
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDID 80 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecC
Confidence 334455566666655431 2223455689999999999999988653 22222 378999999977
Q ss_pred CC----CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccccceeeccccccc
Q psy7848 565 KY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTN 639 (754)
Q Consensus 565 ~~----g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~n 639 (754)
.. .. +|+|++...+..+.........+.++. ......|.|.+.+.-............+|++
T Consensus 81 ~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-------------~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ 147 (529)
T KOG1327|consen 81 SRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-------------GKNAGSGTITISAEEDESDNDVVQFSFRAKN 147 (529)
T ss_pred CccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-------------CccCCcccEEEEeecccccCceeeeeeeeee
Confidence 54 34 999999999998865433222221211 0246789998888776666666666778999
Q ss_pred cccCCCCCCCCceEEEEecCCCCc-c-eeeeeeecCCCCCccceeEEEEeecCccC----CCeEEEEEEEccCCCCCcee
Q psy7848 640 LIPMDSNGFSDPFIKLYLKPDLHK-R-KYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDKDYGKSNDYL 713 (754)
Q Consensus 640 L~~~d~~G~sDPYVKV~L~~~~~k-~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~----~~~L~ItV~D~d~~~~ddfL 713 (754)
|...|..+.+|||..++-..+++. . .++|.++++|+||.|-. |.|....++ +..+.|.+||++..+++++|
T Consensus 148 ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~i 224 (529)
T KOG1327|consen 148 LDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLI 224 (529)
T ss_pred cCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCce
Confidence 999999999999999997644433 3 89999999999999998 555555554 37899999999999999999
Q ss_pred EEEEEecCCC
Q psy7848 714 GCLELCCNSK 723 (754)
Q Consensus 714 G~v~L~l~s~ 723 (754)
|.++-.+...
T Consensus 225 g~~~tt~~~~ 234 (529)
T KOG1327|consen 225 GKFQTTLSEL 234 (529)
T ss_pred eEecccHHHh
Confidence 9999877653
No 212
>KOG1328|consensus
Probab=98.99 E-value=2.9e-10 Score=128.68 Aligned_cols=114 Identities=32% Similarity=0.494 Sum_probs=100.0
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC--CceEEEeeeecCCCCCeeceeEEEeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSV 546 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~--~~~~~rTkvi~~TlNP~WnE~f~F~~I 546 (754)
-..|.+.+.+.|......|.|-|+-|+++.+.|.+|.+||||.|.|+|... .....+|+|+.+|+||+|+|.|.|. |
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-V 1009 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-V 1009 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-c
Confidence 468899999999999999999999999999999999999999999998432 2356899999999999999999995 6
Q ss_pred eccccC--cceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 547 SETDLS--LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 547 ~~~el~--~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
+.+... ...|.|+|+|+|-... ||-|++.+.|.++..
T Consensus 1010 p~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1010 PPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred CccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 655443 4779999999999988 999999999998753
No 213
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.98 E-value=2.8e-09 Score=92.76 Aligned_cols=89 Identities=37% Similarity=0.652 Sum_probs=76.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|.|++|++|.........+|||.+.+.+ ....+|.++.++.||.||+.|.|. +... ....|.|.||+.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence 579999999998877778899999999964 367899999999999999999984 3321 357899999999988
Q ss_pred CC-ccceeeeecCcccC
Q psy7848 567 GH-DFLGEARFPLNRLR 582 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~ 582 (754)
+. .+||.+.+++.++.
T Consensus 74 ~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 74 SKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCceeEEEEEeHHHhh
Confidence 76 99999999999987
No 214
>KOG1011|consensus
Probab=98.95 E-value=9.2e-10 Score=122.97 Aligned_cols=99 Identities=30% Similarity=0.469 Sum_probs=81.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..+.++|+.|.+|.+.|..|.+||||.+.++ ..+.||+++...+||+|||.|+|. - + -....|.+.|||.|
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe-c-h--nstdrikvrvwded 365 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE-C-H--NSTDRIKVRVWDED 365 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee-e-c--CCCceeEEEEecCc
Confidence 4578999999999999999999999999995 467899999999999999999993 2 1 23478999999988
Q ss_pred CC------------CCccceeeeecCcccCCCCccceEeecc
Q psy7848 565 KY------------GHDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 565 ~~------------g~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.. +++|||+..|.+..|..+ .+.|+.|+
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsge--mdvwynle 405 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLE 405 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchh
Confidence 42 349999999999988663 44555554
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=98.94 E-value=2.2e-09 Score=121.91 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=85.9
Q ss_pred cceeeccccccccccC-----CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~-----d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
..|.|.|+.|.+|+.. +.....||||+|.+.+-... .+++|.+..++.||+|||+|.|.|...+| ..|.|.|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence 5688999999987521 22345799999999753322 36778888889999999999999876554 6899999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcce
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~i 741 (754)
||+|..+.|+|||+..|++.+.-.++.| ..|+...|..+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~-VpL~~~~g~~l 525 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGIRA-VPLYDERGKAC 525 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCcee-EeccCCCcCCC
Confidence 9999988999999999999987666654 35555555443
No 216
>KOG1031|consensus
Probab=98.91 E-value=2.1e-09 Score=119.02 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=93.7
Q ss_pred cceeeccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccc-eeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wN-EtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
|.|-|.|..|++|+.||. ....|.||.|.+ ....+||.|..+++||.|| +-|.|+|...+|++..|.|+|.|+|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 678899999999999986 456899999999 4568999999999999999 5799999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 706 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
..+.||-||.|.|+++... +..--.-+...|.-+.+|.++.
T Consensus 79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pif 119 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIF 119 (1169)
T ss_pred ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecc
Confidence 9999999999999988421 0111112334566666776654
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=98.90 E-value=4.6e-09 Score=121.51 Aligned_cols=112 Identities=24% Similarity=0.244 Sum_probs=88.2
Q ss_pred cceeeccccccccccC------CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~------d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.|.+|+.. +.....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...++ ..|.|.
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~ 547 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIE 547 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEE
Confidence 5688999999887432 11233599999998753322 47799999999999999999999876554 589999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
|||+|..+.|+|+|+..|++...-.++. |..|+..-+..+.
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~~l~ 588 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGEKLK 588 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCCCCC
Confidence 9999999899999999999998777664 7777766565544
No 218
>PLN02223 phosphoinositide phospholipase C
Probab=98.84 E-value=1.3e-08 Score=115.74 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=77.9
Q ss_pred CEEEEEEEEecCCCCC-----CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 485 CSLHVTLHRAKGLRAM-----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~-----d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
..|.|+|+.|.+|+.. +.....||||+|.+.+-.......+|.+..|+.||+|||+|.|. |...++ ..|+|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEEE
Confidence 5799999999988521 22345799999999763333456788888889999999999995 555444 589999
Q ss_pred EeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 560 VLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|+|+|..+. +|+|++.+|+..|..+
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~G 511 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEG 511 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCC
Confidence 999999776 9999999999999876
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.82 E-value=8.1e-09 Score=119.31 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=86.4
Q ss_pred cceeeccccccccccC------CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~------d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.+.+++.. +.....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...+| ..|.|.
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~ 546 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVE 546 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEE
Confidence 5688999999986421 22335799999999753322 36789999999999999999999876665 789999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
|+|+|..+.|+|||+..|++...-.++.|= .|+..-|..
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G~~ 585 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKGVK 585 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCcCC
Confidence 999999889999999999999877777653 455555544
No 220
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=1.6e-08 Score=116.63 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=86.1
Q ss_pred cceeeccccccccc----cC--CCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLI----PM--DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~----~~--d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.|.+++ .. +.....||||+|.+.+... ..+++|+++.++.||+|||+|.|.+...+| ..|.|.
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~ 529 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLE 529 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEE
Confidence 56888999988742 11 2234579999999974433 247799999999999999999999876655 789999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcce
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~i 741 (754)
|||+|..+.|+|||+..|++.....++.|= .|+..-+..+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V-~L~~~~g~~l 569 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIRAF-PLHSRKGEKY 569 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccceE-EccCCCcCCC
Confidence 999998888999999999999887777763 4555545443
No 221
>PLN02952 phosphoinositide phospholipase C
Probab=98.78 E-value=4.2e-08 Score=113.69 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=78.2
Q ss_pred CEEEEEEEEecCCCCC------CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~------d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
..|.|+|+.|.+|+.. +.....||||+|.+.+-.....+.+|+++.++.||+|||+|.|. +...++ ..|+|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allrf 546 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLRI 546 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEEE
Confidence 5799999999887532 11234599999999763334467799999999999999999995 554444 58999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.|||+|..+. +|+|++.|||..|..+
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCC
Confidence 9999999876 9999999999999876
No 222
>PLN02270 phospholipase D alpha
Probab=98.73 E-value=5.8e-08 Score=114.58 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEeCCCCCceEEEeeeecCC-CCCeeceeEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMD------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFY 544 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d------------------~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~T-lNP~WnE~f~F~ 544 (754)
.|.|.|+|.+|++|+.++ ..+.+||||.|.|. +....||+++.+. .||.|||.|.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence 488999999999998642 12567999999996 4578899999885 699999999875
Q ss_pred eeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 545 SVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 545 ~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
+.+. ...|.|.|.|.|.+|..+||.+.||+.+|..+...+-|+++.. ... ........|+|+++|.
T Consensus 83 -~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~------~~~----~p~~~~~~~~~~~~f~ 148 (808)
T PLN02270 83 -CAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILD------NDK----NPIHGGSKIHVKLQYF 148 (808)
T ss_pred -eccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccC------CCC----CcCCCCCEEEEEEEEE
Confidence 3333 3789999999999999999999999999988766555555532 110 1122335888898886
Q ss_pred cc
Q psy7848 625 TK 626 (754)
Q Consensus 625 p~ 626 (754)
+.
T Consensus 149 ~~ 150 (808)
T PLN02270 149 EV 150 (808)
T ss_pred Ec
Confidence 53
No 223
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.72 E-value=1e-08 Score=89.11 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=81.5
Q ss_pred eccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCC
Q psy7848 632 VNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN 710 (754)
Q Consensus 632 V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~d 710 (754)
++|+.|+||.-... +.....|||.-+.-. .....||+++....||+|+|+|.|.|...+|....|.|.|+. ...+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 67889999965544 345677998776421 123789999999999999999999999999999999999998 55678
Q ss_pred ceeEEEEEecCCCC-chhhhHHhh
Q psy7848 711 DYLGCLELCCNSKG-DRLRHWVDM 733 (754)
Q Consensus 711 dfLG~v~L~l~s~g-e~~~hW~~l 733 (754)
+.||.|.|++++.| ++..||.++
T Consensus 80 e~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 80 RTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred ceeeEEEeecccCCHHHhhhhhcC
Confidence 99999999999977 589999864
No 224
>KOG2059|consensus
Probab=98.71 E-value=1.9e-08 Score=114.76 Aligned_cols=87 Identities=29% Similarity=0.434 Sum_probs=77.4
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|.+|+||++.+..|.+|||+.|.+. .....+|.++.+++.|.|.|+|.|+|+.. =..|.|-|||+| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD---~E~v~RT~tv~ksL~PF~gEe~~~~iP~~---F~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD---QEEVCRTATVEKSLCPFFGEEFYFEIPRT---FRYLSFYVWDRD-L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec---chhhhhhhhhhhhcCCccccceEEecCcc---eeeEEEEEeccc-c
Confidence 4688999999999999999999999999994 23488999999999999999999999643 478999999999 8
Q ss_pred CCCceeEEEEEecC
Q psy7848 708 KSNDYLGCLELCCN 721 (754)
Q Consensus 708 ~~ddfLG~v~L~l~ 721 (754)
+.|+.||.|.|.-.
T Consensus 78 ~~D~~IGKvai~re 91 (800)
T KOG2059|consen 78 KRDDIIGKVAIKRE 91 (800)
T ss_pred ccccccceeeeeHH
Confidence 99999999999854
No 225
>KOG0169|consensus
Probab=98.69 E-value=2.3e-08 Score=115.71 Aligned_cols=108 Identities=25% Similarity=0.346 Sum_probs=86.3
Q ss_pred ceeeccccccccccCC----CCCCCCceEEEEecCCCCcc-eeeee-eecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMD----SNGFSDPFIKLYLKPDLHKR-KYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d----~~G~sDPYVKV~L~~~~~k~-k~KT~-v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
.|.|.|+.+.+++..- .+..+||||.|.+.+-.... +.+|+ |..++.||.|+|+|+|.+...+| ..|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 5899999999765432 24568999999986544433 88999 56788999999999999987776 68999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCc
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 739 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~ 739 (754)
|+|..++|+|+|+.+|++...-+++.|- .|+..-|+
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV-pL~~~~G~ 730 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQGYRHV-PLLSREGE 730 (746)
T ss_pred ecCCCCcccccceeeccHHHhhCceeee-eecCCCCc
Confidence 9999999999999999999877777774 34444343
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.68 E-value=5.6e-08 Score=112.44 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=78.2
Q ss_pred CCEEEEEEEEecCCCCC------CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEE
Q psy7848 484 TCSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~------d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~ 557 (754)
...|.|+|+.+.+++.. +.....||||+|.+.+-.....+.+|++..++.||+|||+|.|. +...+| ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence 36799999999987521 22235799999999753333356789999999999999999995 555555 6899
Q ss_pred EEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|.|+|+|..+. +|+|++.||+..|..+
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence 99999999766 9999999999999876
No 227
>KOG1031|consensus
Probab=98.67 E-value=3e-08 Score=110.07 Aligned_cols=125 Identities=22% Similarity=0.394 Sum_probs=98.4
Q ss_pred CEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeec-eeEEEeeeeccccCcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~Wn-E~f~F~~I~~~el~~~~L~~sV~D 562 (754)
|.|.|.|+.|++|+.||. ....|.||.+.+.. ..++|.+..+++||.|| +.|.| .+...+++...|+|.|.|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n-----~t~ktdvf~kslnp~wnsdwfkf-evddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-----TTFKTDVFLKSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc-----cceehhhhhhhcCCcccccceEE-ecChhhhccCCeeEEEec
Confidence 568899999999999994 57889999999954 78899999999999999 56888 688899999999999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCcc----ceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISR----DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~----~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
+|.++. +-||.+.|+++.|.....- .....+..|+++-... ...+|+|.|-+.
T Consensus 77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk 134 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK 134 (1169)
T ss_pred ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence 999998 9999999999987543211 1123344566553221 356788776554
No 228
>PLN02228 Phosphoinositide phospholipase C
Probab=98.67 E-value=4.9e-08 Score=112.45 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=88.3
Q ss_pred cceeecccccccccc---CC---CCCCCCceEEEEecCCCC-cceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEE
Q psy7848 628 RALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI 699 (754)
Q Consensus 628 g~L~V~V~~A~nL~~---~d---~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~I 699 (754)
..|.|.|+.|.+|+. .+ .....||||+|.+.+... ..+++|+++.++.||+| ||+|.|.+...+| ..|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf 508 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWF 508 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEE
Confidence 468899999998732 11 223479999999975432 24789999989999999 9999999876665 68999
Q ss_pred EEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 700 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 700 tV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
.|+|+|..+.|+|||...|++.....++.|= .|+...|..+.
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~l~ 550 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKAYK 550 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCCCC
Confidence 9999998889999999999999887777764 56666665543
No 229
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.63 E-value=1.4e-07 Score=109.16 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=77.2
Q ss_pred CEEEEEEEEecCCC--CC----CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLR--AM----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~--~~----d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
..|.|+|+.+.++. .. +.....||||+|.+.+-.....+.+|+++.++.||+|||+|.|. +...++ ..|+|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEEE
Confidence 57999999998753 11 12246799999999753333467789999999999999999995 555555 68999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.|||+|..+. +|||++.||+..|..+
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999998776 9999999999999865
No 230
>PLN02228 Phosphoinositide phospholipase C
Probab=98.62 E-value=2.2e-07 Score=107.24 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=77.2
Q ss_pred CEEEEEEEEecCCCC---CC---CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceEE
Q psy7848 485 CSLHVTLHRAKGLRA---MD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~---~d---~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L~ 557 (754)
..|.|+|+.|.+|+. .+ .....||||+|.+.+.......++|+++.++.||+| ||+|.|. +...++ ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence 479999999998732 11 123479999999976433346679999998899999 9999995 444544 5899
Q ss_pred EEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|.|+|+|..+. +|||++.|||..|..+
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~G 535 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSG 535 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCC
Confidence 99999998766 9999999999999765
No 231
>KOG1264|consensus
Probab=98.57 E-value=1.7e-07 Score=107.74 Aligned_cols=95 Identities=21% Similarity=0.465 Sum_probs=76.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEE-eeeecCCCCCeec-eeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR-TKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~r-Tkvi~~TlNP~Wn-E~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|.|.|+.|++|+.. ..+.+.|||.|.+.+..-...+++ |.|+.|++||+|| |.|.|. |...+ -..|+|.|+|.
T Consensus 1066 ~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe--~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPE--FAFLRFVVYEE 1141 (1267)
T ss_pred EEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCc--eEEEEEEEecc
Confidence 577999999999843 456678999999987443334444 5567889999999 999994 54433 47899999999
Q ss_pred CCCCC-ccceeeeecCcccCCC
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|++++ .|||++.+|+..+..+
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cccCCcceeeeeecchhhhhcc
Confidence 99999 9999999999988654
No 232
>KOG2060|consensus
Probab=98.51 E-value=2.6e-07 Score=99.29 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=91.0
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC-CCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|++.++ ...|.|.|.|++|++|..... ...++||||||+++.+... +.||+...+|++|-|-+...|.-.
T Consensus 257 mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--- 331 (405)
T KOG2060|consen 257 MGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--- 331 (405)
T ss_pred cccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC---
Confidence 445444443 345899999999999977543 3368999999999776554 999999999999999888888853
Q ss_pred cCCCeEEEEEE-EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 692 LSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 692 L~~~~L~ItV~-D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.....|.++|| |+..+..+.|||.++|-+...+ .-.....+||+|.+
T Consensus 332 p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-----------ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 332 PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-----------LSSSPVIGWYKLFG 379 (405)
T ss_pred CCccEEEEEEeccccccchHHHhhHHHHHhhhhc-----------cccccceeeeeccC
Confidence 45789999999 6667888899999988877532 12235667777765
No 233
>KOG0169|consensus
Probab=98.50 E-value=2.1e-07 Score=107.89 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=78.6
Q ss_pred EEEEEEEEecCCCCCC-C---CCCCCcEEEEEEeCCCCCceEEEee-eecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 486 SLHVTLHRAKGLRAMD-I---HGTSDPFCKLNLVPLTKTSHRLRTK-TCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d-~---~g~sDPYVkv~Llp~~~~~~~~rTk-vi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
.|.|.|+.+.++...- . ...+||||.|.+.+-.......+|+ |..|+-||.|+|+|.|. +...+| ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence 6999999999766543 2 2468999999986533345678899 56678999999999994 666666 5899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+|+|..+. +|+|++.+|+..|..+
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCc
Confidence 99999996 9999999999999765
No 234
>PLN02270 phospholipase D alpha
Probab=98.50 E-value=2.4e-07 Score=109.44 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=86.2
Q ss_pred cceeeccccccccccCC------------------CCCCCCceEEEEecCCCCcceeeeeeecCC-CCCccceeEEEEee
Q psy7848 628 RALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIETK 688 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d------------------~~G~sDPYVKV~L~~~~~k~k~KT~v~kkT-lNP~wNEtF~F~V~ 688 (754)
|.|.|+|++|++|+.++ ..+.+||||.|.|. +...-+|+++.+. .||.|||.|...+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE---KARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC---CcEEEEEeecCCCCCCCccccceEEeec
Confidence 78999999999998641 13578999999993 2348899999874 69999999988875
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhhhcCCCccee
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P~~~ie 742 (754)
+. -..|+|+|.|.|.++. .+||.+.|++.. .|+..+.|++++..-+++..
T Consensus 85 h~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~ 136 (808)
T PLN02270 85 HM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIH 136 (808)
T ss_pred cC---cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCC
Confidence 33 3789999999999875 599999999875 56678888888877666553
No 235
>KOG1264|consensus
Probab=98.44 E-value=6.9e-07 Score=102.89 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=74.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCC--CcceeeeeeecCCCCCccc-eeEEEEeecCccCCCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k~k~KT~v~kkTlNP~wN-EtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
-.|.|.|+.|++|+.. ..|..-|||.|.+.+.. .++.+.|.|.-+.+||+|| |+|+|.|...+ -.-|.+.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe--~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE--FAFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc--eEEEEEEEecc
Confidence 4688999999999843 34556799999987543 2335555678899999999 99999997544 37899999999
Q ss_pred cCCCCCceeEEEEEecCC
Q psy7848 705 DYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s 722 (754)
|.++...|||+++.++.+
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred cccCCcceeeeeecchhh
Confidence 999999999999999875
No 236
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.39 E-value=8.8e-07 Score=80.33 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=69.0
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 487 LHVTLHRAKGLRAMD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d---~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|+|..|+||.-.+ ..+.+||||.+.+.+ ..+.||++ +.||.|||+|.|. +. ....+.|.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved----~~kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED----VERARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC----EEEEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeC
Confidence 679999999998877 567899999999963 35788876 5899999999984 42 247899999998
Q ss_pred CCCCCccceeeeecCcccCCC
Q psy7848 564 DKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~ 584 (754)
.......||-.-|.+.+|...
T Consensus 69 ~~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 69 GGDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCCeecceeeehhhHHHHHHH
Confidence 653338899988888887543
No 237
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.36 E-value=6.6e-07 Score=81.12 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=66.8
Q ss_pred eeeccccccccccCC---CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d---~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|+|..|+||.-.+ ..+.+||||.|.+. +..+.||++ +.||.|||+|.|+|. ....++|+|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve---d~~kaRTr~---srnd~WnE~F~i~Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE---DVERARTKP---SRNDRWNEDFEIPVE----KNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC---CEEEEeccC---CCCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence 678999999997776 56779999999993 233888887 479999999999993 35789999999854
Q ss_pred CCCCceeEEEEEecCCCCch
Q psy7848 707 GKSNDYLGCLELCCNSKGDR 726 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~ 726 (754)
. ..--||-.-|.++..-++
T Consensus 71 ~-~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 D-QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred C-eecceeeehhhHHHHHHH
Confidence 3 344588888887765443
No 238
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.10 E-value=4.2e-06 Score=78.20 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=79.1
Q ss_pred eeeccccccccccCC-------C------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-------
Q psy7848 630 LIVNLIKCTNLIPMD-------S------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI------- 689 (754)
Q Consensus 630 L~V~V~~A~nL~~~d-------~------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~------- 689 (754)
|.|.|++|.+|.+.- . .--.++||++.+..-.++..++|+++-++.-|.||+.|+|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888988886531 0 11158999999765445668999999999999999999998651
Q ss_pred ------CccCCCeEEEEEEEccCC----------CCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 690 ------TELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 690 ------~dL~~~~L~ItV~D~d~~----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+-|....|.|+||..... ..|-.||.|.|++. +|+.+ +.-|++||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~----------~Ll~~-rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLR----------DLLTK-RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHH----------HHhhc-ccCccccccC
Confidence 224457899999997632 24568999999986 45543 6778888875
No 239
>PLN02352 phospholipase D epsilon
Probab=97.78 E-value=9.7e-05 Score=87.66 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=79.5
Q ss_pred CCEEEEEEEEecCCCCC----CCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 484 TCSLHVTLHRAKGLRAM----DIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~----d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
.|.|.++|.+|+-+... +.. ...||||.|.|. +....|| .+..||.|||.|.++ +.+. ....|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~-~ah~--~~~~~~f 78 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQIL-CAHP--LDSTITI 78 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEE-eeee--cCCcEEE
Confidence 47899999999733221 111 123999999996 3467788 556699999999874 3333 1257999
Q ss_pred EEeeCCCCCCccceeeeecCcccCCCCc-cceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 559 LVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 559 sV~D~d~~g~dfLGev~I~L~~L~~~~~-~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
.|.| +..+||.+.||+.+|..+.. .+-|+++.. .. +.. ... ..|+|+|+|.|.
T Consensus 79 ~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~------~~---~~p-~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 79 TLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIM------EN---GKP-NPE-LKLRFMLWFRPA 132 (758)
T ss_pred EEec----CCeEEEEEEEEHHHhhCCCcccceEEEccc------CC---CCC-CCC-CEEEEEEEEEEh
Confidence 9988 45899999999999987644 555555532 11 011 112 588899988654
No 240
>KOG2060|consensus
Probab=97.76 E-value=3.9e-05 Score=82.93 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=88.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...|.|++.+-- ..+.|.|-|++|++|..... ...++|||+||+++.+.-..+.+|+...+|++|.|.+.+.|.
T Consensus 255 P~mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~--- 329 (405)
T KOG2060|consen 255 PNMGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD--- 329 (405)
T ss_pred cccccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc---
Confidence 457777776532 56899999999999987763 347899999999986655567889999999999999988873
Q ss_pred ccccCcceEEEEEee-CCCCCC-ccceeeeecCcccCCCC
Q psy7848 548 ETDLSLQSLHILVLD-DDKYGH-DFLGEARFPLNRLRPHI 585 (754)
Q Consensus 548 ~~el~~~~L~~sV~D-~d~~g~-dfLGev~I~L~~L~~~~ 585 (754)
+-+....|++.||. +.+.-+ .|+|.+.|-+.+|....
T Consensus 330 -~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~ 368 (405)
T KOG2060|consen 330 -QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS 368 (405)
T ss_pred -cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccc
Confidence 44556999999996 555555 99999999999987653
No 241
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.64 E-value=5.4e-05 Score=70.95 Aligned_cols=104 Identities=27% Similarity=0.454 Sum_probs=74.7
Q ss_pred EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEE--eCCCCCceEEEeeeecCCCCCeeceeEEEeeee----
Q psy7848 487 LHVTLHRAKGLRAMD-----------I--HGTSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS---- 547 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-----------~--~g~sDPYVkv~L--lp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~---- 547 (754)
|.|.|++|.+|.... . .-..|+||++++ +| ....++|+++.++..|+|+-.+.|. .+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~---~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~ 76 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP---EKELRRTRTVARSFCPEFNHHVEFP-CNLVVQ 76 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC---CCceeeccchhhhcCCCccceEEEe-cccEEE
Confidence 468889999886431 0 113689999996 44 3467899999999999999999884 22
Q ss_pred ---------ccccCcceEEEEEeeCCCCCC-----------ccceeeeecCcccCCCCccceEeecccCCCC
Q psy7848 548 ---------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHISRDLCLNLCKHYPV 599 (754)
Q Consensus 548 ---------~~el~~~~L~~sV~D~d~~g~-----------dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l 599 (754)
.+.|....+.|+|||....++ -+||.+.||+.+|..... -+..||++
T Consensus 77 ~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs-----GitGW~pi 143 (143)
T cd08683 77 RNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS-----GITGWYPI 143 (143)
T ss_pred cCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc-----CccccccC
Confidence 123456789999999875332 479999999999875422 25566653
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.55 E-value=6.9e-05 Score=65.65 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=72.7
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 488 HVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 488 ~VtIi~ArnL~~~d~~g-~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
-|+|+.|+||.-....| ...-|++=-+.-. +...+||.+.++..||+|.|+|.| .|...++..-+|.|+|+. ..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVF-AIKLQNLQTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHH-HHHHhhccceEEEEEeec-cCC
Confidence 48999999997654333 3344666555322 336788999999999999999999 477888888999999998 332
Q ss_pred CCccceeeeecCcccCCCCccceE
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~ 590 (754)
.++.||.+.+.++++-.+ ...+|
T Consensus 78 RKe~iG~~sL~l~s~gee-E~~HW 100 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ-ETDHW 100 (103)
T ss_pred ccceeeEEEeecccCCHH-Hhhhh
Confidence 339999999999987544 33344
No 243
>PLN02352 phospholipase D epsilon
Probab=97.34 E-value=0.00034 Score=83.16 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=70.1
Q ss_pred cceeeccccccccccC----CC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPM----DS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~----d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
|.|.++|.+|+.+... .. +...||||.|.|. +...-+| .+..||.|||.|...+.+ ..+..|+|+|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~~~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk 81 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG---NKKVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLK 81 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeC---CcEEecC---CCCCCCccccceeEEeee--ecCCcEEEEEe
Confidence 6777888888743221 11 1123999999993 2236678 556699999998888753 33467999999
Q ss_pred EccCCCCCceeEEEEEecCC--CCch-hhhHHhhhcCCCccee
Q psy7848 703 DKDYGKSNDYLGCLELCCNS--KGDR-LRHWVDMMKYPDHKHE 742 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s--~ge~-~~hW~~ll~~P~~~ie 742 (754)
| .-.+||.+.|++.. .|+. .+.|++++..-+++..
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~ 119 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP 119 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence 8 25789999999875 3433 7777777776655553
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.28 E-value=0.0003 Score=82.85 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred eccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 622 ~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
.-.+-.|.+.++++.|+ |+. .|+|..+-.. +.+.+||.+.++|+||+||+...|.|.+.++ ....|.|
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~ 115 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF---KDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGP--HLARISV 115 (644)
T ss_pred ecccccCeEEEEeehhh----hcc---CCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCc--ceEEEEE
Confidence 33455688888998887 433 6888766543 6679999999999999999999999876654 3469999
Q ss_pred EEccCCCCCceeEEEEEecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s 722 (754)
||++.++.|+++|.|.+++..
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~ 136 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFD 136 (644)
T ss_pred EecCCCCHHHhhhheeecHhh
Confidence 999999999999999998765
No 245
>KOG1327|consensus
Probab=97.10 E-value=0.0012 Score=75.23 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=93.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEe-CCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Ll-p~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...|.|.+.+.-+..........++|++|...|..+.+|||..++-. .+.+....++|.++.+++||.|-+.. |+
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~----i~ 195 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS----IS 195 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc----cc
Confidence 46899999999888888888888899999999999999999999875 35666778999999999999998743 23
Q ss_pred ccccC----cceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 548 ETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 548 ~~el~----~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
...+. ...+++.+||++..+. ++||++..++.++..
T Consensus 196 ~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 196 LQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 33332 3789999999999988 999999999998864
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=96.86 E-value=0.0019 Score=76.37 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=70.3
Q ss_pred ECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 481 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 481 d~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
+.-.|...++|+.|+ |+. .|+|..+-.. +.+.+||.+.++|+||+||+.-.| .+...++ ...+|.|
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~----g~~~f~t~~~~~~~~p~~~~~~~~-~~~~~~~--~~~~~~~ 115 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF----GEQTFRTETSDSTDKPVWNSEKKL-LLEKNGP--HLARISV 115 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEe----cceeeeeccccccCCcccchhhce-EeccCCc--ceEEEEE
Confidence 334688889999997 443 5887655543 458999999999999999998887 3555544 4569999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
||.+.+.. +++|-++++|.++...
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred EecCCCCHHHhhhheeecHhhccHH
Confidence 99999998 9999999988776544
No 247
>KOG3837|consensus
Probab=96.77 E-value=0.00057 Score=74.73 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=96.2
Q ss_pred EEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec-----cc
Q psy7848 476 LTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE-----TD 550 (754)
Q Consensus 476 ~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~-----~e 550 (754)
+.+.-+..+..|.+.|+++.+++........|-||++.+.-.....++.+|.++++|..|.|+|.|.+. |-. .+
T Consensus 358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~ 436 (523)
T KOG3837|consen 358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNRE 436 (523)
T ss_pred hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHH
Confidence 344445567889999999999987654455688999887422223478899999999999999999873 433 11
Q ss_pred ----cCcceEEEEEeeCCCCCC--ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 551 ----LSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 551 ----l~~~~L~~sV~D~d~~g~--dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
+....+.|+||+...|-+ .|+|.+.|.|..|.......+.++|.+ .....-|.|.|.+..-
T Consensus 437 fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-------------GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 437 FQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-------------GRKAVGGKLEVKVRIR 503 (523)
T ss_pred HHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-------------cccccCCeeEEEEEEe
Confidence 224679999999998866 899999999998866545444444431 1135567777777653
No 248
>KOG1265|consensus
Probab=96.68 E-value=0.0021 Score=75.81 Aligned_cols=93 Identities=19% Similarity=0.349 Sum_probs=72.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecC--CCCc-ceeeeeeec-CCCCCccce-eEEEE-eecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--DLHK-RKYKTGVKW-KTLNPIFNE-EFAIE-TKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~--~~~k-~k~KT~v~k-kTlNP~wNE-tF~F~-V~~~dL~~~~L~ItV 701 (754)
+.+.|.|+.+.=|..++.+ .||.|.|.+ .+.. +.++|+++. +.+||+||| .|.|. |-..+| ..|.|.|
T Consensus 703 ~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence 6789999999989776554 799999874 3333 477888754 678999996 58897 544454 7899999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhH
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHW 730 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW 730 (754)
|+. .+.|||+=.|++++...++.|-
T Consensus 777 yeE----ggK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 777 YEE----GGKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred ecc----CCceeeeeccchhcccCcceeE
Confidence 985 3679999999999887777763
No 249
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.42 E-value=0.0095 Score=59.60 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=68.5
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~ 704 (754)
..+.|.|+.+.+|.. .....+.||++.|..+.... ...|..+.-..++.|||.+.|+|...+|.. ..|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 467899999999976 33457889999887543221 445665554567999999999998888864 6799999997
Q ss_pred cCCC----------------CCceeEEEEEecCC
Q psy7848 705 DYGK----------------SNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~----------------~ddfLG~v~L~l~s 722 (754)
.... ....||.+.+.+-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6322 24689999999754
No 250
>KOG1265|consensus
Probab=96.34 E-value=0.0069 Score=71.73 Aligned_cols=91 Identities=24% Similarity=0.472 Sum_probs=71.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEE--eCCCCCceEEEeeeec-CCCCCeecee-EEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNL--VPLTKTSHRLRTKTCL-RTINPEFHEK-LTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~L--lp~~~~~~~~rTkvi~-~TlNP~WnE~-f~F~~I~~~el~~~~L~~sV 560 (754)
+.|.|+|+.+.=|..++ ...||.|.+ +|.......+||+++. |++||+|+|+ |.|.-|-..+| ..|+|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence 35789999999887665 348999998 4544444678888865 5799999965 88876666655 5899999
Q ss_pred eeCCCCCCccceeeeecCcccCCC
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~ 584 (754)
|+.+. .|||+-.+|+..|..+
T Consensus 777 yeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 777 YEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred eccCC---ceeeeeccchhcccCc
Confidence 99765 6999999999999765
No 251
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=96.26 E-value=0.0021 Score=51.88 Aligned_cols=58 Identities=26% Similarity=0.727 Sum_probs=42.2
Q ss_pred cccccccccCCCccccccccCC-CCccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGA-KCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~-~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
..|.+|..++. .|.-+. -.+.|-.|+..||.-||.--...-.....|||--|+.+|-|
T Consensus 3 ~~CPlCkt~~n-----~gsk~~pNyntCT~Ck~~VCnlCGFNP~Phl~E~~eWLCLnCQ~qRal 61 (61)
T PF05715_consen 3 SLCPLCKTTLN-----VGSKDPPNYNTCTECKSQVCNLCGFNPTPHLTEVKEWLCLNCQMQRAL 61 (61)
T ss_pred ccCCcccchhh-----cCCCCCCCccHHHHHhhhhhcccCCCCCccccccceeeeecchhhhcC
Confidence 68999999986 111222 26899999999999999865312223468999999999853
No 252
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.23 E-value=0.013 Score=57.83 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 646 NGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 646 ~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
...+|-||.+.|..++... -..|..+.-+..+.|||...|+|...+|. +..|.|+|||.+..+....||.+.+++-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3458899999987653221 44666666566788999999999888886 46899999998866667799999999754
No 253
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.18 E-value=0.018 Score=56.78 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=66.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~ 704 (754)
..+.|.|+.+.++... ..+|-||.+.+..++..- ...|..+.- .++.|||.+.|+|...+|. +..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4678899999988653 357999999887643221 334544443 6799999999999888886 46899999997
Q ss_pred cCCC----CCceeEEEEEecCC
Q psy7848 705 DYGK----SNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~----~ddfLG~v~L~l~s 722 (754)
.... ....||.+.+.|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6422 22569999999754
No 254
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.15 E-value=0.3 Score=53.92 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=130.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc-----cCcceEEEEEe
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD-----LSLQSLHILVL 561 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e-----l~~~~L~~sV~ 561 (754)
+.|+|++++|.+... ...-.+...+. .....|..+..+-.|.||.++.+ .++... +++..|++..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN-----GESLETDPVPHTESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC-----CceeeecCCCCCCCceeecceee-eccHHHHHHhhccCCceEEEEE
Confidence 679999999998762 23456677774 37888999999999999999987 344333 34678999999
Q ss_pred eCC-CCCC-ccceeeeecCccc---CCC--CccceEeecccC---CC-CCcc----------ccc--------ccccccc
Q psy7848 562 DDD-KYGH-DFLGEARFPLNRL---RPH--ISRDLCLNLCKH---YP-VPRE----------EEV--------WGEEECW 612 (754)
Q Consensus 562 D~d-~~g~-dfLGev~I~L~~L---~~~--~~~~~~~~L~~~---~~-l~~~----------~~~--------~~~~~~~ 612 (754)
..| ..+. +.||.+.++|..+ ... .....|+.|... |. .+++ ... .......
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~ 152 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPP 152 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCc
Confidence 988 3344 9999999999988 433 333445554321 11 1111 000 0000011
Q ss_pred ccc------------eeEEee----ecc--------ccccceeeccccccccccCC----C--CCCCCceEEEEecCCCC
Q psy7848 613 QHG------------KIFLTL----CFS--------TKKRALIVNLIKCTNLIPMD----S--NGFSDPFIKLYLKPDLH 662 (754)
Q Consensus 613 ~~G------------eL~VsL----~y~--------p~~g~L~V~V~~A~nL~~~d----~--~G~sDPYVKV~L~~~~~ 662 (754)
..| .+.+.+ .|. .....|.|.|..|.||..+- . .+...-|....+++.
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn-- 230 (340)
T PF12416_consen 153 RQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN-- 230 (340)
T ss_pred ccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc--
Confidence 122 111111 111 11246789999999986652 1 123445555556533
Q ss_pred cceeeeeeecCCCCCccc--eeEEEEeecC--cc-----CCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 663 KRKYKTGVKWKTLNPIFN--EEFAIETKIT--EL-----SKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 663 k~k~KT~v~kkTlNP~wN--EtF~F~V~~~--dL-----~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
...|.......+|.|- +.-.|.|... .| ....|.|.++- .+..||.+.|++..
T Consensus 231 --~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~ 292 (340)
T PF12416_consen 231 --DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQP 292 (340)
T ss_pred --EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhh
Confidence 3455667777788664 3332555421 11 12578888886 36779999999875
No 255
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.08 E-value=0.017 Score=56.58 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=65.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d 705 (754)
.+.|.|....++.. ......+-||.+.|..+.... ...|.......++.|||.+.|++...+|. +..|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45666666666654 123457889999887643211 34444444346899999999998777776 467999999987
Q ss_pred CCC--CCceeEEEEEecCC
Q psy7848 706 YGK--SNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~--~ddfLG~v~L~l~s 722 (754)
..+ ....||.+.+.+-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 654 46789999999754
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.19 E-value=0.14 Score=50.26 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=90.2
Q ss_pred CcCCEEEEEEEEecCCCCCCCC--CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc------c--
Q psy7848 482 STTCSLHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD------L-- 551 (754)
Q Consensus 482 ~~~~~L~VtIi~ArnL~~~d~~--g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e------l-- 551 (754)
+....|+|.|..++-....-.. +..+..+.+++.- ..++++|+.+..+.+|.|+|.|.|. +..+. .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATT 81 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhH
Confidence 4456799999998866433211 5566677777654 4589999999999999999999995 44332 1
Q ss_pred ---CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCcc--ceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 552 ---SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 552 ---~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~--~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
....|++.|.-.|..+. .++|+..+.-..+...... .+.+.|... +.......|-|.+++...|
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----------~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----------GPESKVPVGILDLRLELLP 151 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc----------CCCCccceeEEEEEEEeec
Confidence 13678999999999888 9999999988877655343 333333211 1111346788888887766
Q ss_pred c
Q psy7848 626 K 626 (754)
Q Consensus 626 ~ 626 (754)
.
T Consensus 152 ~ 152 (156)
T PF15627_consen 152 N 152 (156)
T ss_pred C
Confidence 4
No 257
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.18 E-value=0.041 Score=54.91 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=68.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeec----CCCCCccceeEEEEeecCccC-CCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~k----kTlNP~wNEtF~F~V~~~dL~-~~~L~It 700 (754)
..+.|.|..+.+++........|-||.+.|..+.... ...|+... -...+.|||.+.|++...+|. +..|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4677888899999887666678999999887643221 33443211 123567999999998777776 4689999
Q ss_pred EEEccCCC---------CCceeEEEEEecCC
Q psy7848 701 VWDKDYGK---------SNDYLGCLELCCNS 722 (754)
Q Consensus 701 V~D~d~~~---------~ddfLG~v~L~l~s 722 (754)
||+..... ....||.+.+.|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99977544 45789999999764
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.78 E-value=0.1 Score=52.23 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
...|.|+|+.+.+|... ....+-||.+.|-.+. .-.....|+.+.-..++.|||.+.|. |...+|. ...|.|+||
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence 35799999999999862 2345678887764322 11233456655555679999999994 7776665 488999999
Q ss_pred eCCCCC----------------C-ccceeeeecCcc
Q psy7848 562 DDDKYG----------------H-DFLGEARFPLNR 580 (754)
Q Consensus 562 D~d~~g----------------~-dfLGev~I~L~~ 580 (754)
+..... . ..||.+.++|-+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 975321 2 578887777765
No 259
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.75 E-value=0.099 Score=52.56 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=61.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEEccC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDKDY 706 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~d~ 706 (754)
.+.|.|..+.++ ..+.+.....||++.|..+.... ...|..+.-+.++.|||.+.|+|...||.. ..|.|+||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 455666666533 33333335578888776532211 345666666678999999999998888864 679999999632
Q ss_pred CC----------------CCceeEEEEEecCC
Q psy7848 707 GK----------------SNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~----------------~ddfLG~v~L~l~s 722 (754)
.. .+..||.+.+.|-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 11 25578888888654
No 260
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.59 E-value=0.12 Score=50.91 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
+..|.|+|+.+.++... ...|-||.+.+-.+.. -.....|..+.. .++.|||.+.|. |...++. ...|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence 35789999999999864 3468899988754221 112234544443 679999999995 7777765 488999999
Q ss_pred eCCCC----CC-ccceeeeecCccc
Q psy7848 562 DDDKY----GH-DFLGEARFPLNRL 581 (754)
Q Consensus 562 D~d~~----g~-dfLGev~I~L~~L 581 (754)
+.... .. ..||.+.++|-+-
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECC
Confidence 97542 12 6799999998763
No 261
>KOG3837|consensus
Probab=94.22 E-value=0.052 Score=59.89 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=74.1
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCC-CCcceeeeeeecCCCCCccceeEEEEeecCc---------cCCCe
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITE---------LSKQT 696 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~-~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~d---------L~~~~ 696 (754)
...|.+.|.++.+++.....-..|.||++.+.-. +...+.||.+++.|..|.|+|.|...|.... .....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 3568899999999877644445788999986422 2345889999999999999999999986521 12368
Q ss_pred EEEEEEEcc-CCCCCceeEEEEEecC
Q psy7848 697 LVITVWDKD-YGKSNDYLGCLELCCN 721 (754)
Q Consensus 697 L~ItV~D~d-~~~~ddfLG~v~L~l~ 721 (754)
+.|+||.+. .+.+|.++|.+.|-+.
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle 471 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLE 471 (523)
T ss_pred eeEEEeeccccccccceeceeeeeeh
Confidence 999999987 4678999999999876
No 262
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=94.17 E-value=0.14 Score=49.34 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=52.9
Q ss_pred CceEEEEecCCCCcc---eeeeeeecCC-CCCccceeEEEEeecCccCC-CeEEEEEEEccCCCCC----ceeEEEEEec
Q psy7848 650 DPFIKLYLKPDLHKR---KYKTGVKWKT-LNPIFNEEFAIETKITELSK-QTLVITVWDKDYGKSN----DYLGCLELCC 720 (754)
Q Consensus 650 DPYVKV~L~~~~~k~---k~KT~v~kkT-lNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~d~~~~d----dfLG~v~L~l 720 (754)
+.||.+.|..++... ...|..+.-+ .++.|||.+.|+|...+|.. ..|.|+||+.+....+ ..||.+.+.+
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 457888876543222 3367766665 79999999999998888864 5799999998876555 6999999997
Q ss_pred CC
Q psy7848 721 NS 722 (754)
Q Consensus 721 ~s 722 (754)
-+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 54
No 263
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.89 E-value=0.19 Score=49.11 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
+..++|+|....++...+ ....+-||.+.|-.+.. -.....|.......++.|||.+.|. |...+|. ...|.|+||
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 356788888888876521 23456788887743221 1223345444434689999999995 5555554 488999999
Q ss_pred eCCCCC--C-ccceeeeecCccc
Q psy7848 562 DDDKYG--H-DFLGEARFPLNRL 581 (754)
Q Consensus 562 D~d~~g--~-dfLGev~I~L~~L 581 (754)
+.+..+ . ..||.+.++|-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 987654 3 8899999999864
No 264
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=93.89 E-value=0.035 Score=44.71 Aligned_cols=52 Identities=25% Similarity=0.676 Sum_probs=41.9
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCC---CCCCceeeccchh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSAS---KKENIWLCKICAE 194 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~---~~~~~WlC~vC~~ 194 (754)
...|..|++.|+ +..+.+.|..|.+.+|..|..+..... ...+..+|..|..
T Consensus 2 ~~~C~~C~~~F~--------~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFT--------LTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCcccc--------CCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 478999999999 467799999999999999998886311 2346789998864
No 265
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=93.51 E-value=0.03 Score=47.07 Aligned_cols=55 Identities=27% Similarity=0.703 Sum_probs=33.3
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc-----CCCCCCceeeccchhhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-----ASKKENIWLCKICAETRE 197 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-----~~~~~~~WlC~vC~~~re 197 (754)
...|..|++.|+ +..+.+.|..|++.||.+|...... ....+..-+|..|...-+
T Consensus 9 ~~~C~~C~~~F~--------~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 9 ASNCMICGKKFS--------LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SB-TTT--B-B--------SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCcCcCCcCC--------CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 489999999999 5577999999999999999986641 122345788998887543
No 266
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=93.19 E-value=0.23 Score=45.00 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=51.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d~ 706 (754)
+.+.+..+.++........+|-||.+.|..++... ...|..+.-...+.|||...|+|...+|. +..|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 44455555555443333346899999987543221 33566555555689999999998888876 4679999998653
No 268
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.84 E-value=0.27 Score=48.61 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 504 GTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 504 g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
..+|-||.+.|-.++. -.....|..+.-+..+.|||.+.|. |...++. ...|.|+||+.+..+. ..||.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3467788777643221 1123355555555678899999995 7777775 4889999999887666 899999999986
Q ss_pred c
Q psy7848 581 L 581 (754)
Q Consensus 581 L 581 (754)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
No 269
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.66 E-value=0.41 Score=52.89 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=68.0
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-----ccCCCeEEEEEEEc
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-----ELSKQTLVITVWDK 704 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-----dL~~~~L~ItV~D~ 704 (754)
+.|.|++|+|.+... .-...|...+ +....-|..+-.+-.|.||-...+++... -+++..|+|++|--
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~----ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF----NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe----CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 578899999998762 2355677777 34467788889999999999999986432 34467899999988
Q ss_pred c-CCCCCceeEEEEEecCCC
Q psy7848 705 D-YGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 705 d-~~~~ddfLG~v~L~l~s~ 723 (754)
| ..+..+.||.+.|+|.+.
T Consensus 75 ~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred cCCCCcceeccEEEEEcccc
Confidence 8 566788999999999864
No 270
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.60 E-value=0.74 Score=46.33 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=39.0
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCC---ceeEEEEEecCCCC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN---DYLGCLELCCNSKG 724 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~d---dfLG~v~L~l~s~g 724 (754)
.+.|.+..++.+|.|+|+|-+.++.....+..|.|++++...-.+. ..+|-+.|+|-..|
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g 122 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG 122 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence 6788999999999999999999987777788999999997643222 68999999987543
No 271
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.26 E-value=2.2 Score=40.72 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=72.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeee----c-cccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVS----E-TDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~----~-~el~~~~L~~ 558 (754)
-.+.|+|.+..+++. ....-||++...... .....|.... ..-.-.|||.|.+..-- . ..+....+.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 357789999998876 223445555443211 1133444332 23447899999874211 1 1256788999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCCC--ccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPHI--SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~~--~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
.|+.....+. ..||.+.|+|+++.... .....+.|... ......|.|++.+.+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------------~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------------KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------------CCCCcEEEEEEEEEE
Confidence 9999865555 59999999999987642 33344444321 134456666666543
No 272
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=92.09 E-value=0.092 Score=61.66 Aligned_cols=63 Identities=22% Similarity=0.556 Sum_probs=44.1
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccccc-----CCCCCCc------eeeccchhhhhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-----ASKKENI------WLCKICAETREMWKK 201 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-----~~~~~~~------WlC~vC~~~rel~~~ 201 (754)
..|.+|++.|+. +.+ .++.+.+-|..|...||..|...... ..+.... -.|+.|.++-|...+
T Consensus 461 dtC~~C~kkFfS-lsK--~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnLlQ 534 (1374)
T PTZ00303 461 DSCPSCGRAFIS-LSR--PLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVSQ 534 (1374)
T ss_pred CcccCcCCcccc-ccc--ccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhHHh
Confidence 679999999982 112 25667999999999999999965421 0111212 389999988875443
No 273
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.98 E-value=1.1 Score=45.39 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=46.0
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC--CC-ccceeeeecCc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY--GH-DFLGEARFPLN 579 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~--g~-dfLGev~I~L~ 579 (754)
...++|-|...+.+|.|+|++.+ .|+.+.....-|.|+++|.-.. .. ..+|-+-+||-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 35678999999999999999998 5888888899999999884332 22 56777777774
No 274
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.79 E-value=1.2 Score=43.80 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=71.7
Q ss_pred cccceeeccccccccccCCC--CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC----------
Q psy7848 626 KKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS---------- 693 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~---------- 693 (754)
....|.|.|..++-...--. .|..+..+.+++.- +.++++|..+.-+.+|.|+|.|.|++..+...
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f--~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF--RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe--cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 34678888888876532211 15567777777743 34699999999999999999999998755311
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCc
Q psy7848 694 -KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 739 (754)
Q Consensus 694 -~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~ 739 (754)
...|.|.|.--|..+...++|.-.++ |..++..+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~ 121 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG 121 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence 25788888877766656677766555 7777777654
No 275
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=91.79 E-value=1.6 Score=43.92 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCC---C-ccceeeeecCcc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---H-DFLGEARFPLNR 580 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g---~-dfLGev~I~L~~ 580 (754)
..+.|.+..++.+|.|+|+|.+ .++.......-|.|+++|..... . ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5677888888899999999998 47777777889999999966432 1 589999999987
No 276
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.74 E-value=1 Score=44.97 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeec--C--CCCCeeceeEEEeeeeccccC-cceEE
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCL--R--TINPEFHEKLTFYSVSETDLS-LQSLH 557 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~--~--TlNP~WnE~f~F~~I~~~el~-~~~L~ 557 (754)
+..|.|+|..+.+++........|-||.+.|-.+.. -.....|+... + ...+.|||.+.|. +...++. ...|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 456889999999998876555678999998754221 11222343221 1 2357799999995 5555554 48899
Q ss_pred EEEeeCCCCC---------C-ccceeeeecCccc
Q psy7848 558 ILVLDDDKYG---------H-DFLGEARFPLNRL 581 (754)
Q Consensus 558 ~sV~D~d~~g---------~-dfLGev~I~L~~L 581 (754)
|+||+....+ . ..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999976543 3 7899999998864
No 277
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.07 E-value=1.7 Score=44.39 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=45.6
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC----CC-ccceeeeecCc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLN 579 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~----g~-dfLGev~I~L~ 579 (754)
...++|-|.....+|.|+|++.+ .|+.+.....-|.|+++|.-.. .. ..+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 45678888888999999999998 5888888899999999985432 11 45777777764
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.05 E-value=1.8 Score=43.52 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D 562 (754)
+..++|+|..+.++. .+......-||++.|-.+..-....+|....-+.++.|||.+.|. |...+|. ...|.|.||+
T Consensus 9 ~~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 457888999987443 222223345677665432221223356666666789999999995 7777765 4889999999
Q ss_pred CC
Q psy7848 563 DD 564 (754)
Q Consensus 563 ~d 564 (754)
..
T Consensus 87 ~~ 88 (178)
T cd08399 87 GK 88 (178)
T ss_pred Ee
Confidence 63
No 279
>PRK12495 hypothetical protein; Provisional
Probab=89.97 E-value=0.59 Score=47.98 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCccccccccc
Q psy7848 89 DPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGG 168 (754)
Q Consensus 89 t~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~ 168 (754)
-+.|||.+-+-..+|++-|+. +.+|-+.|+ + +......+|.-||.+++ -+ .-..+|..|+..
T Consensus 6 kEaEREkLREKye~d~~~R~~----~~~ma~lL~----~--gatmsa~hC~~CG~PIp-------a~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 6 KEAEREKLREKYEQDEQKREA----TERMSELLL----Q--GATMTNAHCDECGDPIF-------RH-DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHHHHHHHhhhHHHHHH----HHHHHHHHH----h--hcccchhhcccccCccc-------CC-CCeeECCCCCCc
Confidence 366788777766666654432 122222221 2 45566799999999998 22 234446666643
No 280
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.37 E-value=1.1 Score=45.60 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=46.3
Q ss_pred ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC----CCCceeEEEEEecC
Q psy7848 664 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCN 721 (754)
Q Consensus 664 ~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~----~~ddfLG~v~L~l~ 721 (754)
..++|.|...+.+|.|||++-+.|+.++..+..|.++++..... ..+..+|-..|+|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 37889999999999999999999999888899999999875421 12245777777763
No 281
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.77 E-value=2 Score=43.68 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC-C-CceeEEEEEecC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK-S-NDYLGCLELCCN 721 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~-~-ddfLG~v~L~l~ 721 (754)
.++|.|..++.+|.|||+|-+.|+.+...+..|.|+++....-. . ...+|-.-|+|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 78999999999999999999999998888999999888754321 1 246887777764
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.41 E-value=3.4 Score=37.40 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=53.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~ 563 (754)
.+.+.+..+.++.........+-||.+.|-.++. -.....|..+.-...+.|||.+.|. |...++. ...|.|+||+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence 3677888888776654333358899998754221 1123356555545668999999995 7777665 48899999986
Q ss_pred CC
Q psy7848 564 DK 565 (754)
Q Consensus 564 d~ 565 (754)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 43
No 283
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.92 E-value=2.1 Score=41.18 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=49.0
Q ss_pred cEEEEEEeCCCC-Cc-eEEEeeeecCC-CCCeeceeEEEeeeeccccC-cceEEEEEeeCCCCCC-----ccceeeeecC
Q psy7848 508 PFCKLNLVPLTK-TS-HRLRTKTCLRT-INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-----DFLGEARFPL 578 (754)
Q Consensus 508 PYVkv~Llp~~~-~~-~~~rTkvi~~T-lNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~d~~g~-----dfLGev~I~L 578 (754)
-||.+.|--++. -. ....|....-+ .++.|||.+.|. |...++. ...|.|+||+.+.... ..||.+.++|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 466666542221 12 23367666665 799999999995 7777765 4789999999776544 4899999998
Q ss_pred ccc
Q psy7848 579 NRL 581 (754)
Q Consensus 579 ~~L 581 (754)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 865
No 284
>KOG1452|consensus
Probab=85.62 E-value=2.5 Score=45.58 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=55.4
Q ss_pred EEEECcCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcce
Q psy7848 478 VTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQS 555 (754)
Q Consensus 478 l~Yd~~~~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~ 555 (754)
+.....+|.|.|++..+++|..... +-..+-||++... ...+-||.+.....-=.|.|+|+...+ ....
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~Dvv-----~~~v 114 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHDVV-----NIEV 114 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceeecc-----ccee
Confidence 3444567999999999999976542 3456889998874 234445555444444568899986322 2467
Q ss_pred EEEEEeeCCCCCC
Q psy7848 556 LHILVLDDDKYGH 568 (754)
Q Consensus 556 L~~sV~D~d~~g~ 568 (754)
|.+-||.|+...+
T Consensus 115 l~~lvySW~pq~R 127 (442)
T KOG1452|consen 115 LHYLVYSWPPQRR 127 (442)
T ss_pred eeEEEeecCchhh
Confidence 8888998887544
No 285
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=85.44 E-value=7.3 Score=37.06 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=55.7
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeee-ecCCCCCccceeEEEEeec------CccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKI------TELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v-~kkTlNP~wNEtF~F~V~~------~dL~~~~L~It 700 (754)
..+.|.|.+..+++. .....||+.... +.......|.. .-.+-.-.|||+|.+.+.. ..+....+.|.
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~-~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRG-DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEEC-CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 356788888888876 122334444332 11111233433 2234456899999998543 22566789999
Q ss_pred EEEccCCCCCceeEEEEEecCC
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s 722 (754)
|+....-+....||.+.|+|..
T Consensus 82 v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred EEEecCCCccceEEEEEEEHHH
Confidence 9987533333689999999875
No 286
>KOG1729|consensus
Probab=82.93 E-value=1 Score=48.60 Aligned_cols=56 Identities=29% Similarity=0.675 Sum_probs=42.5
Q ss_pred cccccccccc-cCCCccccccccCCCCcccccccccccccccccccc--CCCCCCceeeccchhhhh
Q psy7848 134 AAHACALCGD-KFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS--ASKKENIWLCKICAETRE 197 (754)
Q Consensus 134 ~~~~C~~C~~-~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~--~~~~~~~WlC~vC~~~re 197 (754)
....|..|+. .|+ +..+.+-|..|..-||.-|...... .....+.-.|..|...-+
T Consensus 167 ea~~C~~C~~~~Ft--------l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 167 EATECMVCGCTEFT--------LSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cceecccCCCcccc--------HHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 4599999999 555 5666899999999999999987431 222345669999987653
No 287
>KOG1818|consensus
Probab=79.60 E-value=1 Score=53.07 Aligned_cols=57 Identities=21% Similarity=0.546 Sum_probs=45.6
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc---CCCCCCceeeccchhhhhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS---ASKKENIWLCKICAETREM 198 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~---~~~~~~~WlC~vC~~~rel 198 (754)
....|.+|-..|| +.++.+-|..|+...|..|....-. .+..+.+=+|..|.+....
T Consensus 164 D~~~C~rCr~~F~--------~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~ 223 (634)
T KOG1818|consen 164 DSEECLRCRVKFG--------LTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTR 223 (634)
T ss_pred cccccceeeeeee--------eccccccccccchhhccCccccccCcccccccccceehhhhHHHhhh
Confidence 4489999999999 6678999999999999999887642 2234567899999887643
No 288
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=78.93 E-value=0.83 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=22.7
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV 169 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v 169 (754)
...|++|++.+-. +....+..|.+|+++|
T Consensus 6 ~Y~C~~Cg~~~~~------~~~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVEL------DQETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeeh------hhccCceeCCCCCcEE
Confidence 4789999999972 3355689999999876
No 289
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=75.88 E-value=7 Score=39.17 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=42.3
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC-----CCCceeEEEEEecCC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-----KSNDYLGCLELCCNS 722 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~-----~~ddfLG~v~L~l~s 722 (754)
.++|-+ ....+|.|||+|-..++.....+..|.|++++-..- .....+|-+.|+|-.
T Consensus 54 ~~~sv~-~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVV-YYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEE-EcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444 444899999999999975555788999999986632 235679998888765
No 290
>KOG4027|consensus
Probab=75.63 E-value=19 Score=35.45 Aligned_cols=93 Identities=17% Similarity=0.063 Sum_probs=58.3
Q ss_pred CCCceEEEEecCCCCc------c---eeeeeeecCCCCC-ccceeEEEEeecCcc-CCCeEEEEEEEccCCCCCceeEEE
Q psy7848 648 FSDPFIKLYLKPDLHK------R---KYKTGVKWKTLNP-IFNEEFAIETKITEL-SKQTLVITVWDKDYGKSNDYLGCL 716 (754)
Q Consensus 648 ~sDPYVKV~L~~~~~k------~---k~KT~v~kkTlNP-~wNEtF~F~V~~~dL-~~~~L~ItV~D~d~~~~ddfLG~v 716 (754)
.+|.|||..+...... + ..-|.-.++-.|| +||--|+..+..... ....|.++||-+|.+++|..+|-.
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg 104 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYG 104 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeee
Confidence 4788998886532211 1 1122222333444 456544444433222 246899999999999999999987
Q ss_pred EEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCCC
Q psy7848 717 ELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS 753 (754)
Q Consensus 717 ~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~~ 753 (754)
.|.+-. .|+....+-|.|.|++.+
T Consensus 105 ~~hiP~-------------~pgrh~~~vp~f~Pe~~s 128 (187)
T KOG4027|consen 105 MLHIPT-------------EPGRHVCRVPCFLPEPSS 128 (187)
T ss_pred eEecCc-------------CCCceeEEEeeEecCCHH
Confidence 777643 366677888888888764
No 291
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=75.53 E-value=18 Score=32.54 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcc
Q psy7848 506 SDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNR 580 (754)
Q Consensus 506 sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~ 580 (754)
.+-.+.+.+. +....+|.-.. ..+..|++.|.|. +.. .+.|.|.||-.|. +.+.|-..+.|.+
T Consensus 9 ~eV~avLklD----n~~VgqT~Wk~-~s~q~WDQ~Fti~-LdR----sRELEI~VywrD~--RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLD----NTVVGQTQWKP-KSNQAWDQSFTLE-LER----SRELEIAVYWRDW--RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEc----CeEEeeccccc-cccccccceeEEE-eec----ccEEEEEEEEecc--hhhhhheeeEhhh
Confidence 5667777775 23566776544 3578899999982 333 3899999998765 3566666676766
No 292
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=75.47 E-value=1.7 Score=31.31 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=19.3
Q ss_pred ccccccccCCCccccccccCCCCcccccccccc
Q psy7848 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV 169 (754)
Q Consensus 137 ~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v 169 (754)
.|+.|+..+. +-......|..|.++|
T Consensus 2 ~C~~Cg~~~~-------~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVE-------LKPGDPIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE--------BSTSSTSSBSSSS-SE
T ss_pred CCCcCCCeeE-------cCCCCcEECCcCCCeE
Confidence 5889999988 6666788888888765
No 293
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=71.91 E-value=12 Score=37.71 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=46.8
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC------CceeEEEEEecCCCC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS------NDYLGCLELCCNSKG 724 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~------ddfLG~v~L~l~s~g 724 (754)
...|.|..++.+|.|+|+|-..++...-.+..|.|++++-..-.+ ...+|-..|+|-..|
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g 120 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNG 120 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCC
Confidence 778999999999999999999998766667899999998553221 245888888865433
No 294
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=71.85 E-value=31 Score=35.09 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=44.8
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC---------CC-ccceeeeecCcc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY---------GH-DFLGEARFPLNR 580 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~---------g~-dfLGev~I~L~~ 580 (754)
.....|.|..++.+|.|+|++.+ .++.......-|.|+.||..-. +. ..+|-+.+||-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI-~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKI-ELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEE-ecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 35667889889999999999998 4777777778999999997521 11 457777777754
No 295
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=70.55 E-value=1.5 Score=37.80 Aligned_cols=51 Identities=31% Similarity=0.690 Sum_probs=24.9
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
+...|.+||...| +.--+..=+.|..|...||+-|-.+-. +++.-.|.-|.
T Consensus 8 ~~qiCqiCGD~VG-----l~~~Ge~FVAC~eC~fPvCr~CyEYEr----keg~q~CpqCk 58 (80)
T PF14569_consen 8 NGQICQICGDDVG-----LTENGEVFVACHECAFPVCRPCYEYER----KEGNQVCPQCK 58 (80)
T ss_dssp SS-B-SSS--B-------B-SSSSB--S-SSS-----HHHHHHHH----HTS-SB-TTT-
T ss_pred CCcccccccCccc-----cCCCCCEEEEEcccCCccchhHHHHHh----hcCcccccccC
Confidence 3478999999999 122344467899999999999999886 57777888886
No 296
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=70.21 E-value=2.1 Score=33.12 Aligned_cols=27 Identities=19% Similarity=0.562 Sum_probs=18.5
Q ss_pred cccccccccCCCccccccccCCCCcccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV 169 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v 169 (754)
..|..||..+. +-......|..|.++|
T Consensus 3 Y~C~~Cg~~~~-------~~~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENE-------IKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEee-------cCCCCceECCCCCceE
Confidence 46788888777 4445577777777654
No 297
>PTZ00046 rifin; Provisional
Probab=67.09 E-value=2.6 Score=46.62 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=22.8
Q ss_pred cccccccccccCCCccccccccCCCC
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKC 159 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~ 159 (754)
-|..|++||..||-+.+.||++|+.+
T Consensus 136 vEK~CLkCG~~LGgVaP~~Gliggi~ 161 (358)
T PTZ00046 136 VEKGCLRCGCGLGGVAPSWGLIGGIA 161 (358)
T ss_pred HHHHHHhcCCccccccccccccchHH
Confidence 36899999999998789999998875
No 298
>KOG1842|consensus
Probab=66.87 E-value=1.9 Score=48.44 Aligned_cols=40 Identities=18% Similarity=0.510 Sum_probs=35.7
Q ss_pred CCccccccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 131 GAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 131 ~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
++.+.-.|..|...|| |..+.+-|.=|+.-+|..|..+.+
T Consensus 176 DDs~V~~CP~Ca~~F~--------l~rRrHHCRLCG~VmC~~C~k~iS 215 (505)
T KOG1842|consen 176 DDSSVQFCPECANSFG--------LTRRRHHCRLCGRVMCRDCSKFIS 215 (505)
T ss_pred CCCcccccccccchhh--------hHHHhhhhhhcchHHHHHHHHhcC
Confidence 4446799999999999 778899999999999999999886
No 299
>KOG4275|consensus
Probab=66.58 E-value=1.2 Score=47.46 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=41.4
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
.+|--||..|- -..+...|.||++.+|.-|.+.. ...-+|..|+..++.
T Consensus 45 p~ckacg~~f~--------~~~~k~~c~dckk~fc~tcs~v~------~~lr~c~~c~r~~at 93 (350)
T KOG4275|consen 45 PHCKACGEEFE--------DAQSKSDCEDCKKEFCATCSRVS------ISLRTCTSCRRVNAT 93 (350)
T ss_pred chhhhhchhHh--------hhhhhhhhhhhhHHHHHHHHHhc------ccchhhhHHHHHHhh
Confidence 59999999998 55669999999999999999444 567889999987654
No 300
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=65.96 E-value=21 Score=36.30 Aligned_cols=58 Identities=22% Similarity=0.199 Sum_probs=45.3
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC--CC-------CCceeEEEEEecCC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--GK-------SNDYLGCLELCCNS 722 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~--~~-------~ddfLG~v~L~l~s 722 (754)
...|.|..++.+|.|+|+|-..++...-.+..|.|+.++..- .. ....+|-..|+|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 678999999999999999999998766677899999998652 11 12458887777643
No 301
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=64.31 E-value=2.3 Score=33.97 Aligned_cols=30 Identities=33% Similarity=0.783 Sum_probs=18.0
Q ss_pred ccccccccCCCccccccccCCCCcccccccccc
Q psy7848 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV 169 (754)
Q Consensus 137 ~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v 169 (754)
.|++|++..|. |.+ +-..-|.+|.+|-...
T Consensus 1 ~C~iCg~kigl-~~~--~k~~DG~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGL-FKR--FKIKDGYICKDCLKKL 30 (51)
T ss_pred CCCcccccccc-ccc--eeccCccchHHHHHHh
Confidence 49999999993 222 1122345666666555
No 302
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=64.22 E-value=16 Score=36.54 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=41.7
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC-----CC-ccceeeeecCcc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----GH-DFLGEARFPLNR 580 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~-----g~-dfLGev~I~L~~ 580 (754)
..+.|-+..+ .+|.|+|+|.+. ++.......-|.|+++|.... .. ..+|-+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3444444444 899999999984 666655778999999996632 23 788988888875
No 303
>KOG0906|consensus
Probab=62.54 E-value=10 Score=44.83 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 646 NGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 646 ~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
...+|-||+..+.+.+... --.|+.+....-=.|||-.++.|...||. +..|.|++||....+.-.|+|+.++.+..
T Consensus 44 e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 44 ETSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred ccchhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 3457888888776553322 23444332222224999999999888886 57899999999888888999999998764
Q ss_pred CC-------chhhhHHhhhcCC
Q psy7848 723 KG-------DRLRHWVDMMKYP 737 (754)
Q Consensus 723 ~g-------e~~~hW~~ll~~P 737 (754)
.. ..+..|+....++
T Consensus 124 k~~~lk~G~~~l~~~~~~e~d~ 145 (843)
T KOG0906|consen 124 KYGMLKQGMQDLKLWPSVEADG 145 (843)
T ss_pred ccchHhhhhhhccccccccCCC
Confidence 21 2344466555443
No 304
>KOG1813|consensus
Probab=60.94 E-value=3.6 Score=44.13 Aligned_cols=42 Identities=21% Similarity=0.598 Sum_probs=35.2
Q ss_pred cccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhh
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETR 196 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~r 196 (754)
|.+|.++|- ..+=-.|.|++|..|..... ...-.|-||+.+.
T Consensus 244 c~icr~~f~------------~pVvt~c~h~fc~~ca~~~~-----qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 244 CFICRKYFY------------RPVVTKCGHYFCEVCALKPY-----QKGEKCYVCSQQT 285 (313)
T ss_pred ccccccccc------------cchhhcCCceeehhhhcccc-----ccCCcceeccccc
Confidence 999999999 56667899999999998775 4557788998765
No 305
>PRK09458 pspB phage shock protein B; Provisional
Probab=60.25 E-value=22 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=28.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHH
Q psy7848 82 WKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERV 121 (754)
Q Consensus 82 ~~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l 121 (754)
++.++.||++|.+.+.+..+++++|+ +||.-|..=|
T Consensus 30 ~~~~~~Ls~~d~~~L~~L~~~A~rm~----~RI~tLE~IL 65 (75)
T PRK09458 30 RQGSQGLSQEEQQRLAQLTEKAERMR----ERIQALEAIL 65 (75)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34567899999999999999999885 5676665444
No 306
>KOG0955|consensus
Probab=59.46 E-value=5 Score=50.36 Aligned_cols=52 Identities=25% Similarity=0.546 Sum_probs=43.3
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
.+..|.+|.+.-. .-.|.-++|-+|...|=+.|-..-+. +++.|+|.-|-..
T Consensus 218 ~D~~C~iC~~~~~-------~n~n~ivfCD~Cnl~VHq~Cygi~~i---peg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 218 EDAVCCICLDGEC-------QNSNVIVFCDGCNLAVHQECYGIPFI---PEGQWLCRRCLQS 269 (1051)
T ss_pred CCccceeeccccc-------CCCceEEEcCCCcchhhhhccCCCCC---CCCcEeehhhccC
Confidence 4589999999888 66788999999999999999874332 6899999999743
No 307
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=59.42 E-value=42 Score=33.33 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=48.2
Q ss_pred CCceEEEEecCCCCcceeeeeeec--CCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 649 SDPFIKLYLKPDLHKRKYKTGVKW--KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 649 sDPYVKV~L~~~~~k~k~KT~v~k--kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
..-|+||++. ++...+|.... ....-.|||.|.+.|. .. -..|.|.||.... ..+..|+.+.|++-.
T Consensus 37 ~~~~ikl~~N---~k~V~~T~~~~l~~dF~v~f~~~f~v~i~--~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 37 TRYYIKLFFN---DKEVSRTRSRPLWSDFRVHFNEIFNVQIT--RW-PESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred eeEEEEEEEC---CEEEEeeeeEecCCCeEEeccCEEEEEEe--cC-CCEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 3568999883 34466666533 2233468899988874 22 4899999999877 568899999999764
No 308
>KOG4323|consensus
Probab=58.13 E-value=4.5 Score=46.23 Aligned_cols=67 Identities=21% Similarity=0.432 Sum_probs=49.0
Q ss_pred ccccccccccCCCccccccccCCCCccccccc---cccccccccccccCCCCCCceeeccchhhhh-hhhhccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCR---GGVCQKCGIESVSASKKENIWLCKICAETRE-MWKKSNAWFFK 208 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~---~~vC~~C~~~~~~~~~~~~~WlC~vC~~~re-l~~~sG~Wf~~ 208 (754)
+..|..|+.--. ..+|.=.+|..|+ |.-|..|-+.---.+.....|.|.+|.-..+ +.-.+|.|--.
T Consensus 168 n~qc~vC~~g~~-------~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r~t~~~~dv 238 (464)
T KOG4323|consen 168 NLQCSVCYCGGP-------GAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPRLTLRWADV 238 (464)
T ss_pred cceeeeeecCCc-------CccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccccccccccc
Confidence 355999997666 4677777777776 5667777765543445667899999998877 56778888766
No 309
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=57.30 E-value=6.2 Score=49.98 Aligned_cols=45 Identities=27% Similarity=0.622 Sum_probs=33.3
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccc-----ccccccccccCCCCCCceeeccch
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV-----CQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v-----C~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
.+.|..||..-. ...|..|..+. |..||..... . ....-.|.-|.
T Consensus 667 ~rkCPkCG~~t~------------~~fCP~CGs~te~vy~CPsCGaev~~-d-es~a~~CP~CG 716 (1337)
T PRK14714 667 RRRCPSCGTETY------------ENRCPDCGTHTEPVYVCPDCGAEVPP-D-ESGRVECPRCD 716 (1337)
T ss_pred EEECCCCCCccc------------cccCcccCCcCCCceeCccCCCccCC-C-ccccccCCCCC
Confidence 489999999765 44999999764 9999998852 2 11244688887
No 310
>KOG1452|consensus
Probab=57.21 E-value=17 Score=39.47 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=53.8
Q ss_pred eeccccccceeeccccccccccCC--CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEE
Q psy7848 621 LCFSTKKRALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 698 (754)
Q Consensus 621 L~y~p~~g~L~V~V~~A~nL~~~d--~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ 698 (754)
+......|.|.|.++++++|.... .+-+-+-|+.+... ...+-+|.+......-.|.|.|..++- ....+.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d---rqh~aRt~vrs~~~~f~w~e~F~~Dvv----~~~vl~ 116 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD---RQHPARTRVRSSGPGFAWAEDFKHDVV----NIEVLH 116 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec---ccCccccccccCCCCccchhhceeecc----cceeee
Confidence 334445689999999999995443 35567888888762 111445555444444568898888763 346788
Q ss_pred EEEEEccCCC
Q psy7848 699 ITVWDKDYGK 708 (754)
Q Consensus 699 ItV~D~d~~~ 708 (754)
+-||.|+.-.
T Consensus 117 ~lvySW~pq~ 126 (442)
T KOG1452|consen 117 YLVYSWPPQR 126 (442)
T ss_pred EEEeecCchh
Confidence 9999887543
No 311
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=56.92 E-value=37 Score=31.37 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=37.0
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCc-----cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCc
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 739 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~d-----L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~ 739 (754)
.+-|.++. ..||.||-+-.|.|..++ |+...|.|+++..- ...-..||.++|.+. ++++.++.
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~----------~ll~~~~~ 79 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLR----------PLLESNGE 79 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--S----------HHHH--S-
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeech----------hhhcCCCc
Confidence 67788876 789999999999987655 34678999999866 444678999999987 44555554
Q ss_pred ceeeEEee
Q psy7848 740 KHEGIHNL 747 (754)
Q Consensus 740 ~ie~Wh~L 747 (754)
.+.+--.|
T Consensus 80 ~i~~~~~l 87 (107)
T PF11618_consen 80 RIHGSATL 87 (107)
T ss_dssp -EEEEEEE
T ss_pred eEEEEEEE
Confidence 45444444
No 312
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=56.74 E-value=5.1 Score=30.20 Aligned_cols=32 Identities=22% Similarity=0.749 Sum_probs=17.8
Q ss_pred cccccccccccccccccccCCCCCCceeeccchhhhh
Q psy7848 161 VCHDCRGGVCQKCGIESVSASKKENIWLCKICAETRE 197 (754)
Q Consensus 161 ~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~re 197 (754)
.|..|+-.+..-|.+... ...|.|.+|...-+
T Consensus 4 rC~~C~aylNp~~~~~~~-----~~~w~C~~C~~~N~ 35 (40)
T PF04810_consen 4 RCRRCRAYLNPFCQFDDG-----GKTWICNFCGTKNP 35 (40)
T ss_dssp B-TTT--BS-TTSEEETT-----TTEEEETTT--EEE
T ss_pred ccCCCCCEECCcceEcCC-----CCEEECcCCCCcCC
Confidence 466666666666666552 56899999986543
No 313
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=56.09 E-value=3 Score=42.13 Aligned_cols=44 Identities=20% Similarity=0.648 Sum_probs=38.4
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETR 196 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~r 196 (754)
-.|.+|-+.+- ..+-..|.|+.|..|.+.-. ...-.|-+|++..
T Consensus 197 F~C~iCKkdy~------------spvvt~CGH~FC~~Cai~~y-----~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYE------------SPVVTECGHSFCSLCAIRKY-----QKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhcc------------chhhhhcchhHHHHHHHHHh-----ccCCcceecchhh
Confidence 48999999999 77778999999999999876 5677899999875
No 314
>KOG2041|consensus
Probab=55.61 E-value=16 Score=43.68 Aligned_cols=77 Identities=27% Similarity=0.538 Sum_probs=46.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCcccccccc--ccccccccccccC
Q psy7848 103 AEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG--GVCQKCGIESVSA 180 (754)
Q Consensus 103 ~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~--~vC~~C~~~~~~~ 180 (754)
.|+|...|.|+.+.|--++=.--.- .-.....--|..|+.+.- ...-+|..|+- .+|-.-|....
T Consensus 1086 ~e~l~~a~kq~ye~La~~iFsk~~p-~d~~~~~vdc~~cg~~i~----------~~~~~c~ec~~kfP~CiasG~pIt-- 1152 (1189)
T KOG2041|consen 1086 FEELDDAEKQEYENLAFRIFSKNPP-VDPNSAKVDCSVCGAKID----------PYDLQCSECQTKFPVCIASGRPIT-- 1152 (1189)
T ss_pred hhhCCHHHHHHHHHHHHHHhccCCC-CCCCccceeeeecCCcCC----------ccCCCChhhcCcCceeeccCCccc--
Confidence 3445555555655555544221111 111113467999998665 44778999964 58888888876
Q ss_pred CCCCCceeeccchh
Q psy7848 181 SKKENIWLCKICAE 194 (754)
Q Consensus 181 ~~~~~~WlC~vC~~ 194 (754)
....|+|..|.-
T Consensus 1153 --~~~fWlC~~CkH 1164 (1189)
T KOG2041|consen 1153 --DNIFWLCPRCKH 1164 (1189)
T ss_pred --cceEEEcccccc
Confidence 245899999963
No 315
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=55.57 E-value=46 Score=33.63 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=43.0
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCC------C-ccceeeeecCc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------H-DFLGEARFPLN 579 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g------~-dfLGev~I~L~ 579 (754)
....|.|...+.+|.|+|++.. .++.......-|.|+.+|..-.. . ..+|-+.+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi-~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKI-KLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEE-EcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 5677888889999999999997 47777667789999999954321 1 45677666665
No 316
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.10 E-value=34 Score=30.62 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhccCCCccccccccccccCC
Q psy7848 114 VGRLVERVDNMKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 114 i~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
.-+++.+|...+....-= .....|..|+++||
T Consensus 58 ~~~~~~~l~~~~~~~v~i-~~~~~C~vC~k~l~ 89 (109)
T PF10367_consen 58 NLQLKYELVKLRSRSVVI-TESTKCSVCGKPLG 89 (109)
T ss_pred HHHHHHHHHhhcCceEEE-CCCCCccCcCCcCC
Confidence 344555555544433100 13478999999999
No 317
>PRK11595 DNA utilization protein GntX; Provisional
Probab=55.09 E-value=5.3 Score=41.62 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=31.4
Q ss_pred cccccccccCCCccccccccCCCCccccccccc------cccccccccccCCCCCCceeeccchhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGG------VCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~------vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
..|+.|++.+. .- ...+|.+|... .|..|+.... ...-+|.-|.+.
T Consensus 6 ~~C~~C~~~~~-------~~--~~~lC~~C~~~l~~~~~~C~~Cg~~~~-----~~~~~C~~C~~~ 57 (227)
T PRK11595 6 GLCWLCRMPLA-------LS--HWGICSVCSRALRTLKTCCPQCGLPAT-----HPHLPCGRCLQK 57 (227)
T ss_pred CcCccCCCccC-------CC--CCcccHHHHhhCCcccCcCccCCCcCC-----CCCCCcHHHHcC
Confidence 67999999875 11 12489999754 4999997653 112469999653
No 318
>KOG3576|consensus
Probab=54.28 E-value=2.4 Score=43.03 Aligned_cols=57 Identities=26% Similarity=0.723 Sum_probs=41.2
Q ss_pred cccccccccccCCCccccccccCCCCcccc-cccccccccccccccc------CCCC---CCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCH-DCRGGVCQKCGIESVS------ASKK---ENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~-~C~~~vC~~C~~~~~~------~~~~---~~~WlC~vC~~~ 195 (754)
+.-.|-+|++.|+ +.| +.|+...|+ +=+++.|+-||.-... ..+. -.-+.|.+|.|.
T Consensus 116 d~ftCrvCgK~F~--lQR---mlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~ka 182 (267)
T KOG3576|consen 116 DSFTCRVCGKKFG--LQR---MLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKA 182 (267)
T ss_pred Ceeeeehhhhhhh--HHH---HHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHH
Confidence 4589999999999 344 678888886 5788899999987643 1111 124899998764
No 319
>PRK00420 hypothetical protein; Validated
Probab=53.42 E-value=15 Score=34.31 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhhccCCCccccccccccccCC
Q psy7848 111 QERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 111 ~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
.+-++++-+.|.. |...-..+|..|+.+|+
T Consensus 5 ~~~~k~~a~~Ll~------Ga~ml~~~CP~Cg~pLf 34 (112)
T PRK00420 5 EDIVKKAAELLLK------GAKMLSKHCPVCGLPLF 34 (112)
T ss_pred HHHHHHHHHHHHh------HHHHccCCCCCCCCcce
Confidence 3445555555543 22223489999999999
No 320
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.06 E-value=3.1 Score=32.55 Aligned_cols=44 Identities=20% Similarity=0.519 Sum_probs=34.4
Q ss_pred ccccccccccCCCccccccccCCCCccccccccc-cccccccccccCCCCCCceeeccchhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGG-VCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~-vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
+..|.+|.+..- ..+-.-|+|. +|..|..... .....|.+|+..
T Consensus 2 ~~~C~iC~~~~~------------~~~~~pCgH~~~C~~C~~~~~-----~~~~~CP~Cr~~ 46 (50)
T PF13920_consen 2 DEECPICFENPR------------DVVLLPCGHLCFCEECAERLL-----KRKKKCPICRQP 46 (50)
T ss_dssp HSB-TTTSSSBS------------SEEEETTCEEEEEHHHHHHHH-----HTTSBBTTTTBB
T ss_pred cCCCccCCccCC------------ceEEeCCCChHHHHHHhHHhc-----ccCCCCCcCChh
Confidence 367999999877 4566679999 9999999885 367889999753
No 321
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=52.79 E-value=32 Score=29.79 Aligned_cols=36 Identities=25% Similarity=0.610 Sum_probs=28.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHH
Q psy7848 82 WKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERV 121 (754)
Q Consensus 82 ~~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l 121 (754)
++.++.||++|.+.+.+..++++.|+ +||.-|..=|
T Consensus 30 ~~~~~gLs~~d~~~L~~L~~~a~rm~----eRI~tLE~IL 65 (75)
T PF06667_consen 30 WKSSQGLSEEDEQRLQELYEQAERME----ERIETLERIL 65 (75)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 34567899999999999999998885 5676665444
No 322
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=51.13 E-value=17 Score=36.61 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=20.2
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
..|..|+..|. +..+.. .-..|..||...
T Consensus 118 Y~Cp~C~~ryt-------f~eA~~------~~F~Cp~Cg~~L 146 (178)
T PRK06266 118 FFCPNCHIRFT-------FDEAME------YGFRCPQCGEML 146 (178)
T ss_pred EECCCCCcEEe-------HHHHhh------cCCcCCCCCCCC
Confidence 89999999988 444432 146677777665
No 323
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.54 E-value=6.9 Score=42.65 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=32.3
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
+..|.+|..... +--....+=..|.|++|..|-...-. .+.-.|.+|.+
T Consensus 3 ~~~CP~Ck~~~y-------~np~~kl~i~~CGH~~C~sCv~~l~~----~~~~~CP~C~~ 51 (309)
T TIGR00570 3 DQGCPRCKTTKY-------RNPSLKLMVNVCGHTLCESCVDLLFV----RGSGSCPECDT 51 (309)
T ss_pred CCCCCcCCCCCc-------cCcccccccCCCCCcccHHHHHHHhc----CCCCCCCCCCC
Confidence 468999999766 11111112227999999999888641 23347999964
No 324
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.01 E-value=19 Score=35.61 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=19.7
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
..|.+|+..+. +..+-. .-..|..||...
T Consensus 110 Y~Cp~c~~r~t-------f~eA~~------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 110 FICPNMCVRFT-------FNEAME------LNFTCPRCGAML 138 (158)
T ss_pred EECCCCCcEee-------HHHHHH------cCCcCCCCCCEe
Confidence 89999999988 444432 146666666655
No 325
>PRK04023 DNA polymerase II large subunit; Validated
Probab=49.33 E-value=9.7 Score=47.23 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=29.1
Q ss_pred cccccccccccCCCccccccccCCCCcccccccc-----ccccccccccccCCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG-----GVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~-----~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
+.+.|.-||.... ...|..|.. +.|.+||.... ...|.-|...
T Consensus 625 g~RfCpsCG~~t~------------~frCP~CG~~Te~i~fCP~CG~~~~-------~y~CPKCG~E 672 (1121)
T PRK04023 625 GRRKCPSCGKETF------------YRRCPFCGTHTEPVYRCPRCGIEVE-------EDECEKCGRE 672 (1121)
T ss_pred cCccCCCCCCcCC------------cccCCCCCCCCCcceeCccccCcCC-------CCcCCCCCCC
Confidence 4588999998866 567888864 47777776653 1337777643
No 326
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=48.42 E-value=9.5 Score=42.25 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=21.6
Q ss_pred ccccccccccCC-CccccccccCCCC
Q psy7848 135 AHACALCGDKFS-PIFDRLGLFGAKC 159 (754)
Q Consensus 135 ~~~C~~C~~~~g-~~~~~~~~~~~~~ 159 (754)
|..|++||..|| -+.+.||++|+.+
T Consensus 140 EK~CLkCg~~LGggVaP~~Gllggi~ 165 (353)
T TIGR01477 140 EKGCLRCGCGLGGGVAPGVGLLGGIA 165 (353)
T ss_pred HHhHHhcCCccCccccccccccccHH
Confidence 589999999998 7778999988764
No 327
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=48.42 E-value=68 Score=31.87 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=47.3
Q ss_pred CCCcEEEEEEeCCCCCceEEEeeeecCC--CCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccC
Q psy7848 505 TSDPFCKLNLVPLTKTSHRLRTKTCLRT--INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582 (754)
Q Consensus 505 ~sDPYVkv~Llp~~~~~~~~rTkvi~~T--lNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~ 582 (754)
...-|++|.+.+ +...+|+...-+ ..-.|||.|.+. |.. + -..|.|.||........+|+++.||+-...
T Consensus 36 ~~~~~ikl~~N~----k~V~~T~~~~l~~dF~v~f~~~f~v~-i~~--~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFND----KEVSRTRSRPLWSDFRVHFNEIFNVQ-ITR--W-PESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECC----EEEEeeeeEecCCCeEEeccCEEEEE-Eec--C-CCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 345688888852 456667654432 223467888774 322 2 278999999988855599999999987653
No 328
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=48.30 E-value=46 Score=30.71 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCcccccccc
Q psy7848 108 YIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 108 ~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
..+++.|.++..-|..|. .+.+ ..|.-||++.+ +.| ..+......|..|+.
T Consensus 59 ~~~~~~l~~i~~AL~ri~----~g~y--G~C~~Cge~I~--~~R-L~a~P~a~~Cv~Cq~ 109 (110)
T TIGR02420 59 DRERKLIKKIDEALKRIE----DGEY--GYCEECGEEIG--LRR-LEARPTATLCIDCKT 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHh----CCCC--CchhccCCccc--HHH-HhhCCCccccHHhHc
Confidence 344555666666666654 3345 69999999998 455 123344777999974
No 329
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=48.23 E-value=11 Score=45.56 Aligned_cols=32 Identities=25% Similarity=0.631 Sum_probs=18.1
Q ss_pred Cccccccccc----cccccccccccCCCCCCceeeccchhh
Q psy7848 159 CLVCHDCRGG----VCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 159 ~~~C~~C~~~----vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
..+|..|+.. +|.+||...+ ...=.|.-|...
T Consensus 15 akFC~~CG~~l~~~~Cp~CG~~~~-----~~~~fC~~CG~~ 50 (645)
T PRK14559 15 NRFCQKCGTSLTHKPCPQCGTEVP-----VDEAHCPNCGAE 50 (645)
T ss_pred CccccccCCCCCCCcCCCCCCCCC-----cccccccccCCc
Confidence 4455555543 4777776664 344566666543
No 330
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=47.61 E-value=18 Score=35.20 Aligned_cols=33 Identities=18% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhccCCCccccccccccccCC
Q psy7848 112 ERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 112 ~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
.|+.++.++|++.-+....+.. ..|..|+..|.
T Consensus 78 ~r~~~~~~~L~~~l~~e~~~~~--Y~Cp~C~~~y~ 110 (147)
T smart00531 78 YKLDKMRKRLEDKLEDETNNAY--YKCPNCQSKYT 110 (147)
T ss_pred HHHHHHHHHHHHHHhcccCCcE--EECcCCCCEee
Confidence 3466666666543333233333 89999999998
No 331
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=46.95 E-value=7.4 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=13.4
Q ss_pred ccccccccccCCCccccccccCCCCcccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
.+-|.+||.+... ..+....+|..|.+
T Consensus 3 ~rfC~~CG~~t~~------~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKP------APGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-------SSSS-EEESSSS-
T ss_pred CcccCcCCccccC------CCCcCEeECCCCcC
Confidence 3678888888772 23345667766664
No 332
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=46.74 E-value=19 Score=39.27 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=20.5
Q ss_pred ccccccccccCC-CccccccccCCC
Q psy7848 135 AHACALCGDKFS-PIFDRLGLFGAK 158 (754)
Q Consensus 135 ~~~C~~C~~~~g-~~~~~~~~~~~~ 158 (754)
+..|++|+..|| -|...||++++.
T Consensus 93 EK~CL~Cg~~LGggVap~~Gl~g~~ 117 (299)
T PF02009_consen 93 EKGCLKCGCGLGGGVAPSWGLIGGI 117 (299)
T ss_pred HHhhhhhcCcCCccccccccccccc
Confidence 688999999999 888888888744
No 333
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=46.57 E-value=7.1 Score=44.45 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=36.0
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccc-ccccCCCCCCceeeccch
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGI-ESVSASKKENIWLCKICA 193 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~-~~~~~~~~~~~WlC~vC~ 193 (754)
-.|..|..+-. =-.|.-++|.+|.-.|=+.|-. ..- +++.|+|+-|-
T Consensus 194 ~~C~~c~~t~~-------eN~naiVfCdgC~i~VHq~CYGI~f~----peG~WlCrkCi 241 (669)
T COG5141 194 DICTKCTSTHN-------ENSNAIVFCDGCEICVHQSCYGIQFL----PEGFWLCRKCI 241 (669)
T ss_pred hhhHhcccccc-------CCcceEEEecCcchhhhhhcccceec----Ccchhhhhhhc
Confidence 56777776666 4556789999999999999954 332 58899999885
No 334
>KOG1329|consensus
Probab=45.00 E-value=25 Score=43.29 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCceEEEEecCCCCcceeeeeeecCC-CCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CCc
Q psy7848 649 SDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGD 725 (754)
Q Consensus 649 sDPYVKV~L~~~~~k~k~KT~v~kkT-lNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge 725 (754)
.++|+.+.|. .....+|.+..+. .+|.|++.|..... . ....+.+.|-+.+..+.-..+|.+.+++.. .+.
T Consensus 138 ~e~Ylt~~l~---~~~~~~t~~~~~f~e~s~~~f~~~~~~~--h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~ 211 (887)
T KOG1329|consen 138 LENYLTVVLH---KARYRRTHVIYEFLENSRWSFSFDIGFA--H-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGH 211 (887)
T ss_pred ccchheeeec---hhhhhchhhhhcccccchhhhhcccccc--c-cccEEEEeecCCccccceeEEEEeccchhhhhccc
Confidence 5899999983 1225677777666 79999998766543 2 247899999999888767789999999765 445
Q ss_pred hhhhHHhhhcCCC
Q psy7848 726 RLRHWVDMMKYPD 738 (754)
Q Consensus 726 ~~~hW~~ll~~P~ 738 (754)
....|++++.+-+
T Consensus 212 ~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 212 RIGGWFPILDNDG 224 (887)
T ss_pred cccceeeeeccCC
Confidence 6667777766544
No 335
>PLN02189 cellulose synthase
Probab=44.39 E-value=11 Score=47.09 Aligned_cols=52 Identities=25% Similarity=0.623 Sum_probs=39.6
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
+...|.+||...|. + --|..-+.|..|...||+.|-.+.. +++.=.|--|..
T Consensus 33 ~~~~C~iCgd~vg~--~---~~g~~fvaC~~C~fpvCr~Cyeyer----~eg~q~CpqCkt 84 (1040)
T PLN02189 33 DGQVCEICGDEIGL--T---VDGDLFVACNECGFPVCRPCYEYER----REGTQNCPQCKT 84 (1040)
T ss_pred cCccccccccccCc--C---CCCCEEEeeccCCCccccchhhhhh----hcCCccCcccCC
Confidence 34699999999992 1 1233358899999999999998886 566777887753
No 336
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=43.65 E-value=12 Score=46.84 Aligned_cols=54 Identities=30% Similarity=0.565 Sum_probs=40.5
Q ss_pred CCccccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 131 GAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 131 ~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
++.+...|.+||...|. ..-|..=+-|..|...||+.|-.+.. +++.=.|.-|.
T Consensus 11 ~~~~~~~c~iCGd~vg~-----~~~Ge~FVAC~eC~fpvCr~cyeye~----~~g~~~cp~c~ 64 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGV-----KEDGQPFVACHVCGFPVCKPCYEYER----SEGNQCCPQCN 64 (1044)
T ss_pred cCCCcchhhccccccCc-----CCCCCEEEEeccCCCccccchhhhhh----hcCCccCCccC
Confidence 33456889999999992 12223358899999999999998886 56667777774
No 337
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=43.29 E-value=6.5 Score=29.41 Aligned_cols=31 Identities=23% Similarity=0.663 Sum_probs=24.8
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
+..|..|.+... ...|.+|+..+|..|....
T Consensus 3 ~~~C~~H~~~~~------------~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEPL------------SLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSBE------------EEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccce------------EEEecCCCCccCccCCCCC
Confidence 367888887755 6789999999999998874
No 338
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=43.16 E-value=9.3 Score=36.47 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=14.0
Q ss_pred CCCccccccccccccCC
Q psy7848 130 GGAAAAHACALCGDKFS 146 (754)
Q Consensus 130 ~~~~~~~~C~~C~~~~g 146 (754)
|...-..+|..||.+|+
T Consensus 23 GAkML~~hCp~Cg~PLF 39 (131)
T COG1645 23 GAKMLAKHCPKCGTPLF 39 (131)
T ss_pred hhHHHHhhCcccCCcce
Confidence 45556799999999999
No 339
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=43.02 E-value=13 Score=44.84 Aligned_cols=33 Identities=27% Similarity=0.732 Sum_probs=28.3
Q ss_pred cccccccccccCCCccccccccCCCCccccccccc------cccccccccc
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGG------VCQKCGIESV 178 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~------vC~~C~~~~~ 178 (754)
+.+-|..||.++. ...|..|... .|.+||....
T Consensus 14 ~akFC~~CG~~l~------------~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 14 NNRFCQKCGTSLT------------HKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCccccccCCCCC------------CCcCCCCCCCCCcccccccccCCccc
Confidence 4588999999988 4689999987 8999999984
No 340
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=42.71 E-value=22 Score=41.61 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 108 YIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 108 ~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
++|++|-.+...+| .+. .+++.|+-|+..-- .-.|....-.||-+|..-+.
T Consensus 4 KR~qERnekILreL---lkl-----PgNk~CADCgs~~P------------~WASiNlGIFICi~CSGIHR 54 (648)
T PLN03119 4 KREEERNEKIIRGL---MKL-----PPNRRCINCNSLGP------------QYVCTTFWTFVCMACSGIHR 54 (648)
T ss_pred hHHHHHHHHHHHHH---hhC-----cCCCccccCCCCCC------------CceeeccceEEeccchhhhc
Confidence 34555555553333 332 23489999987443 67788888999999988775
No 341
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.67 E-value=11 Score=47.30 Aligned_cols=51 Identities=25% Similarity=0.597 Sum_probs=38.9
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
+...|.+||...|. .--|..=+-|..|...||+-|-.|-. +++.=-|.-|.
T Consensus 16 ~~qiCqICGD~vg~-----~~~Ge~FVAC~eC~FPVCrpCYEYEr----~eG~q~CPqCk 66 (1079)
T PLN02638 16 GGQVCQICGDNVGK-----TVDGEPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCK 66 (1079)
T ss_pred CCceeeecccccCc-----CCCCCEEEEeccCCCccccchhhhhh----hcCCccCCccC
Confidence 34699999999992 11222357899999999999998886 56777787774
No 342
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.60 E-value=13 Score=26.77 Aligned_cols=27 Identities=30% Similarity=0.848 Sum_probs=20.0
Q ss_pred ccccccccccccCCCCCCceeeccchhhhh
Q psy7848 168 GVCQKCGIESVSASKKENIWLCKICAETRE 197 (754)
Q Consensus 168 ~vC~~C~~~~~~~~~~~~~WlC~vC~~~re 197 (754)
.+|..||..... ....|.|.+|...++
T Consensus 2 ~~C~~CGy~y~~---~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 2 YVCPVCGYIYDG---EEAPWVCPVCGAPKD 28 (33)
T ss_pred EECCCCCCEECC---CcCCCcCcCCCCcHH
Confidence 689999987531 346899999987554
No 343
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=41.87 E-value=24 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=19.7
Q ss_pred cccccccccCCCccccccccCCCCcccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
..|..||.+.+ +.| ..+......|.+|+-
T Consensus 81 G~Ce~cG~~Ip--~~R-L~A~P~A~~Ci~cQ~ 109 (120)
T COG1734 81 GICEECGEPIP--EAR-LEARPTARLCIECQE 109 (120)
T ss_pred cchhccCCcCC--HHH-HhhCcchHHHHHHHH
Confidence 78999999998 344 223334677877763
No 344
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=41.63 E-value=1.1e+02 Score=30.30 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=54.0
Q ss_pred cccccccccCCCCCCCCceEEEEecCCC------Ccc-eeeeeeecCC-----CCCccceeEEEEeecCccCC-CeEEEE
Q psy7848 634 LIKCTNLIPMDSNGFSDPFIKLYLKPDL------HKR-KYKTGVKWKT-----LNPIFNEEFAIETKITELSK-QTLVIT 700 (754)
Q Consensus 634 V~~A~nL~~~d~~G~sDPYVKV~L~~~~------~k~-k~KT~v~kkT-----lNP~wNEtF~F~V~~~dL~~-~~L~It 700 (754)
|..|.+. ...+-||+..+.-.. +.. ...|++.+.. -.-+||.-|++.+....+.. ..|.|+
T Consensus 8 I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 8 IESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 4555544 335679988875322 222 4566665432 23579999888876555544 689999
Q ss_pred EEEccCCCCCceeEEEEEec
Q psy7848 701 VWDKDYGKSNDYLGCLELCC 720 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l 720 (754)
||..|.++++.+.|--.+.+
T Consensus 82 V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 82 VYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEcccCCeEEeEEeEEEe
Confidence 99999999998887755554
No 345
>KOG3507|consensus
Probab=41.57 E-value=10 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=19.8
Q ss_pred cccccccccccccCCCCCCceeeccchhhhhhhhhc
Q psy7848 167 GGVCQKCGIESVSASKKENIWLCKICAETREMWKKS 202 (754)
Q Consensus 167 ~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~s 202 (754)
.+||..|+.+.. -.......|+-|.-.-.+++++
T Consensus 20 iYiCgdC~~en~--lk~~D~irCReCG~RIlyKkRt 53 (62)
T KOG3507|consen 20 IYICGDCGQENT--LKRGDVIRCRECGYRILYKKRT 53 (62)
T ss_pred EEEecccccccc--ccCCCcEehhhcchHHHHHHHH
Confidence 466777776664 2234456777776555555544
No 346
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=41.07 E-value=20 Score=30.14 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=22.9
Q ss_pred cccccccccCCCccccccccCCCCccc-cccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccccCC
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVC-HDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGL 212 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C-~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~~~~ 212 (754)
-.|.+|...|. .-+| -.|.|..|+.|-...- .. -|.+|+ +=+|-.+.+.|
T Consensus 8 LrCs~C~~~l~------------~pv~l~~CeH~fCs~Ci~~~~-----~~--~CPvC~--------~Paw~qD~~~N 58 (65)
T PF14835_consen 8 LRCSICFDILK------------EPVCLGGCEHIFCSSCIRDCI-----GS--ECPVCH--------TPAWIQDIQIN 58 (65)
T ss_dssp TS-SSS-S--S------------S-B---SSS--B-TTTGGGGT-----TT--B-SSS----------B-S-SS----
T ss_pred cCCcHHHHHhc------------CCceeccCccHHHHHHhHHhc-----CC--CCCCcC--------ChHHHHHHHhh
Confidence 56888888877 6667 7899999999987764 12 299998 44566664333
No 347
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=41.07 E-value=38 Score=30.92 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=14.9
Q ss_pred ccccccccccCCCccccccccCCCCcccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
-..|-+||.+=. +.+|.-|+.
T Consensus 80 ~~~C~~CG~pss------------~~iC~~C~l 100 (104)
T TIGR00269 80 LRRCERCGEPTS------------GRICKACKF 100 (104)
T ss_pred CCcCCcCcCcCC------------ccccHhhhh
Confidence 477999988877 666666653
No 348
>PLN02436 cellulose synthase A
Probab=41.02 E-value=14 Score=46.42 Aligned_cols=52 Identities=25% Similarity=0.637 Sum_probs=39.4
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
+...|.+||...|. ..-|..=+-|..|...||+.|-.+.. +++.=.|--|..
T Consensus 35 ~~~iCqICGD~Vg~-----t~dGe~FVACn~C~fpvCr~Cyeyer----~eg~~~Cpqckt 86 (1094)
T PLN02436 35 SGQTCQICGDEIEL-----TVDGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKT 86 (1094)
T ss_pred CCccccccccccCc-----CCCCCEEEeeccCCCccccchhhhhh----hcCCccCcccCC
Confidence 34699999999992 11222347899999999999998886 566777888753
No 349
>PHA03158 hypothetical protein; Provisional
Probab=40.46 E-value=46 Score=33.72 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhc
Q psy7848 87 PLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNV 128 (754)
Q Consensus 87 ~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~ 128 (754)
-+|.+|+..|++-|-++++-=-..-+|+.+|.++++++.+..
T Consensus 229 v~t~~EK~~~~kQllka~kkc~~~s~~~~~leeei~eleks~ 270 (273)
T PHA03158 229 IKTAKEKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSL 270 (273)
T ss_pred eecHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 468899999988888888887888899999999999998754
No 350
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=40.22 E-value=17 Score=38.21 Aligned_cols=9 Identities=33% Similarity=1.102 Sum_probs=7.2
Q ss_pred cccccccCC
Q psy7848 138 CALCGDKFS 146 (754)
Q Consensus 138 C~~C~~~~g 146 (754)
|.+||.+.-
T Consensus 1 C~~CG~~~~ 9 (236)
T PF04981_consen 1 CPRCGREIE 9 (236)
T ss_pred CCCCCCCCC
Confidence 888998666
No 351
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=40.20 E-value=52 Score=32.62 Aligned_cols=52 Identities=17% Similarity=0.470 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCccccccc
Q psy7848 106 LDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCR 166 (754)
Q Consensus 106 l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~ 166 (754)
+...++++|.++..-|..|.. +.+ -.|..||.+.+ +.| ..+......|.+|+
T Consensus 63 l~~~~~~~L~~Ie~AL~Ri~~----G~Y--G~Ce~CGe~I~--~~R-L~a~P~a~~Ci~Cq 114 (159)
T TIGR02890 63 LREHEERELREIEHALQKIEN----GTY--GICEVCGKPIP--YER-LEAIPTATTCVECQ 114 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----CCC--CeecccCCccc--HHH-HhhCCCcchhHHHH
Confidence 444445556666666665532 344 68999999888 333 11223345555554
No 352
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=40.13 E-value=33 Score=34.57 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=19.2
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
.+|..|+..++ ||+ +...+ ..|..||...
T Consensus 114 y~C~~~~~r~s--fde---A~~~~--------F~Cp~Cg~~L 142 (176)
T COG1675 114 YVCPNCHVKYS--FDE---AMELG--------FTCPKCGEDL 142 (176)
T ss_pred eeCCCCCCccc--HHH---HHHhC--------CCCCCCCchh
Confidence 89999999988 444 22223 5666666655
No 353
>PLN02195 cellulose synthase A
Probab=39.71 E-value=14 Score=46.11 Aligned_cols=49 Identities=31% Similarity=0.718 Sum_probs=37.5
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
..|.+||...|. + --|..=+-|..|...||+-|-.|.. +++.=-|.-|-
T Consensus 7 ~~c~~cgd~~~~--~---~~g~~fvaC~eC~~pvCrpCyeyer----~eg~q~CpqCk 55 (977)
T PLN02195 7 PICATCGEEVGV--D---SNGEAFVACHECSYPLCKACLEYEI----KEGRKVCLRCG 55 (977)
T ss_pred ccceecccccCc--C---CCCCeEEEeccCCCccccchhhhhh----hcCCccCCccC
Confidence 689999999991 1 1233358899999999999998886 46666677764
No 354
>KOG2422|consensus
Probab=39.57 E-value=9.3 Score=44.68 Aligned_cols=24 Identities=17% Similarity=-0.010 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhhHHHhHHHHH
Q psy7848 89 DPTEQEKIEEVIKRAEALDYIEQE 112 (754)
Q Consensus 89 t~~E~e~I~~Vl~R~~~l~~~E~~ 112 (754)
+++|.+-+-.|+.+|.+..-++.+
T Consensus 142 ~~~~~~~q~~v~~i~~~~~~~~~~ 165 (665)
T KOG2422|consen 142 LEEEASSQDWVLEIDLKSDPLFTE 165 (665)
T ss_pred chhccccchhHHHHhhhcccccCc
Confidence 344445666777777776655443
No 355
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=38.57 E-value=12 Score=28.48 Aligned_cols=42 Identities=24% Similarity=0.526 Sum_probs=24.1
Q ss_pred cccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccc
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKIC 192 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC 192 (754)
|.+|.+-|. .-+=..|+|.+|..|=..... ......+.|.+|
T Consensus 1 CpiC~~~~~------------~Pv~l~CGH~FC~~Cl~~~~~-~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK------------DPVSLPCGHSFCRSCLERLWK-EPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S------------SEEE-SSSSEEEHHHHHHHHC-CSSSST---SSS
T ss_pred CCccchhhC------------CccccCCcCHHHHHHHHHHHH-ccCCcCCCCcCC
Confidence 667777766 223358999999999776652 222333888877
No 356
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=38.21 E-value=72 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.393 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCcccccccc
Q psy7848 110 EQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 110 E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
+.+.|.++..-|..|. .+.+ ..|.-||++.+ +.| ..+......|..|+.
T Consensus 92 ~~~~L~~I~~AL~Ri~----~gtY--G~Ce~CGe~I~--~~R-L~A~P~A~~CI~CQe 140 (151)
T PRK10778 92 ERKLIKKIEKTLKKVE----DEDF--GYCESCGVEIG--IRR-LEARPTADLCIDCKT 140 (151)
T ss_pred HHHHHHHHHHHHHHHh----CCCC--ceeccCCCccc--HHH-HhcCCCccccHHHHH
Confidence 3344555555555443 3445 78999999988 334 122233556777653
No 357
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=38.02 E-value=41 Score=31.10 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=32.9
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeecccc-----CcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el-----~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+.+.|.++. ..+|.+|-+-.| .|..+++ ....|.|+++..- ..+ ..||.+.|++..+...
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y-~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQY-KVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLES 76 (107)
T ss_dssp --EE---EE-SSS----EEEEE-EE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH-
T ss_pred eeeccccee-CCCccceeEEEE-EEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcC
Confidence 456677776 799999999887 4665554 4688999999866 334 9999999999998744
No 358
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.83 E-value=27 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.640 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhccCCCccccccccccccCC
Q psy7848 113 RVGRLVERVDNMKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 113 Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
++..+.+.+.+++.. . ..|.+|+.+|+
T Consensus 5 ~~~~~~k~i~~l~~~-----~--~~CPlC~r~l~ 31 (54)
T PF04423_consen 5 EIEELKKYIEELKEA-----K--GCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHHHTT------S--EE-TTT--EE-
T ss_pred HHHHHHHHHHHHhcC-----C--CcCCCCCCCCC
Confidence 344455555555533 2 49999999997
No 359
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=37.47 E-value=61 Score=29.03 Aligned_cols=44 Identities=16% Similarity=0.398 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhccCCCc----cccccccccccCCCccccccccCCCCccccccc
Q psy7848 117 LVERVDNMKRNVTGGAA----AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCR 166 (754)
Q Consensus 117 L~~~l~~~k~~~~~~~~----~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~ 166 (754)
+-+.|+.+.+.....|. -...|--||-.|.. .-.+....|..|+
T Consensus 36 v~~~L~hiak~lkr~g~~Llv~Pa~CkkCGfef~~------~~ik~pSRCP~CK 83 (97)
T COG3357 36 VYDHLEHIAKSLKRKGKRLLVRPARCKKCGFEFRD------DKIKKPSRCPKCK 83 (97)
T ss_pred HHHHHHHHHHHHHhCCceEEecChhhcccCccccc------cccCCcccCCcch
Confidence 33455555444433332 34677777777762 2344456666665
No 360
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=37.13 E-value=7.9 Score=28.60 Aligned_cols=39 Identities=26% Similarity=0.675 Sum_probs=27.0
Q ss_pred cccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccc
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKIC 192 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC 192 (754)
|.+|.+.+.. ..+...|+|..|..|-.... +....|-+|
T Consensus 1 C~iC~~~~~~-----------~~~~~~CGH~fC~~C~~~~~-----~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----------PVVVTPCGHSFCKECIEKYL-----EKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----------EEEECTTSEEEEHHHHHHHH-----HCTSB-TTT
T ss_pred CCCCCCcccC-----------cCEECCCCCchhHHHHHHHH-----HCcCCCcCC
Confidence 7788777771 44788999999999977764 124677665
No 361
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=35.84 E-value=1.7e+02 Score=27.42 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=49.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC-CC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY-GK 708 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~-~~ 708 (754)
|.+.=+.-..+|..+.+|.+.||++|+-. +.....|........-.=...+.|.+...-.-..-+.|.+|+... ..
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~ 82 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNG---GKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSM 82 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEET---TEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTEC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECC---CccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccc
Confidence 34444444566766777779999999862 112223333222211111223444443221224678899999873 55
Q ss_pred CCceeEEEEEecCC
Q psy7848 709 SNDYLGCLELCCNS 722 (754)
Q Consensus 709 ~ddfLG~v~L~l~s 722 (754)
.++.|.++.+.-.-
T Consensus 83 ~~~~~f~~~FnT~F 96 (134)
T PF10409_consen 83 SKEKMFRFWFNTGF 96 (134)
T ss_dssp CCEEEEEEEEEGGG
T ss_pred ccCeEEEEEEeeee
Confidence 67789999988553
No 362
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=35.81 E-value=12 Score=45.66 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=0.0
Q ss_pred ccccccccccCC
Q psy7848 135 AHACALCGDKFS 146 (754)
Q Consensus 135 ~~~C~~C~~~~g 146 (754)
.+.|.-|+..-.
T Consensus 655 ~r~Cp~Cg~~t~ 666 (900)
T PF03833_consen 655 RRRCPKCGKETF 666 (900)
T ss_dssp ------------
T ss_pred cccCcccCCcch
Confidence 366666666544
No 363
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=35.71 E-value=1.1e+02 Score=27.69 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 649 SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 649 sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
++..+.+.+. ++....|.-+.- .+..|++.|.|++. ....|+|.||-+|.
T Consensus 9 ~eV~avLklD---n~~VgqT~Wk~~-s~q~WDQ~Fti~Ld----RsRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLD---NTVVGQTQWKPK-SNQAWDQSFTLELE----RSRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEc---CeEEeecccccc-ccccccceeEEEee----cccEEEEEEEEecc
Confidence 5666777762 333555554322 47789999999984 24789999987663
No 364
>PLN02400 cellulose synthase
Probab=35.68 E-value=19 Score=45.43 Aligned_cols=51 Identities=25% Similarity=0.612 Sum_probs=38.9
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
+...|.+||...|. .--|..=+-|..|...||+-|=.|-. +++.=.|.-|.
T Consensus 35 ~gqiCqICGD~VG~-----t~dGe~FVAC~eCaFPVCRpCYEYER----keGnq~CPQCk 85 (1085)
T PLN02400 35 NGQICQICGDDVGV-----TETGDVFVACNECAFPVCRPCYEYER----KDGTQCCPQCK 85 (1085)
T ss_pred CCceeeecccccCc-----CCCCCEEEEEccCCCccccchhheec----ccCCccCcccC
Confidence 34699999999992 11222357899999999999998886 57777788774
No 365
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=35.02 E-value=14 Score=33.07 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=15.8
Q ss_pred CCceeeccchhhhhhhhhccccccc
Q psy7848 184 ENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 184 ~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
.++|.|.-|.+ ....|+|-++
T Consensus 51 ~GIW~C~~C~~----~~AGGAy~~~ 71 (90)
T PF01780_consen 51 TGIWKCKKCGK----KFAGGAYTPS 71 (90)
T ss_dssp TTEEEETTTTE----EEE-BSSSSS
T ss_pred eEEeecCCCCC----EEeCCCcccc
Confidence 56899999985 4678888877
No 366
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=34.79 E-value=20 Score=31.76 Aligned_cols=11 Identities=36% Similarity=1.226 Sum_probs=7.9
Q ss_pred CCceeeccchh
Q psy7848 184 ENIWLCKICAE 194 (754)
Q Consensus 184 ~~~WlC~vC~~ 194 (754)
.++|.|.-|..
T Consensus 51 ~GIW~C~kCg~ 61 (89)
T COG1997 51 TGIWKCRKCGA 61 (89)
T ss_pred cCeEEcCCCCC
Confidence 56788887763
No 367
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=34.39 E-value=16 Score=30.04 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=15.1
Q ss_pred cccccccccCCCccccccccCCCCccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCR 166 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~ 166 (754)
..|.-|+..+-. .-......|.+|.
T Consensus 10 ~~CtSCg~~i~p------~e~~v~F~CPnCG 34 (61)
T COG2888 10 PVCTSCGREIAP------GETAVKFPCPNCG 34 (61)
T ss_pred ceeccCCCEecc------CCceeEeeCCCCC
Confidence 678888887741 2333355566665
No 368
>KOG1819|consensus
Probab=34.27 E-value=10 Score=43.11 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=28.4
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
.+|.-|+.+|. .+-+.+-|..|..-.|-+|.--.
T Consensus 902 ~~cmacq~pf~--------afrrrhhcrncggifcg~cs~as 935 (990)
T KOG1819|consen 902 EQCMACQMPFN--------AFRRRHHCRNCGGIFCGKCSCAS 935 (990)
T ss_pred hhhhhccCcHH--------HHHHhhhhcccCceeecccccCC
Confidence 68999999999 34448999999999999997654
No 369
>KOG2419|consensus
Probab=33.82 E-value=4 Score=47.80 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCc-ceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 505 TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 505 ~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~-~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
..++++.+.+.. +.++|+....+.+|+|||. .| ...+.+. ..|...|.|++.... +-+.- +-+..+.
T Consensus 304 ~~~~~~itsf~~-----~~frt~~~~~~e~piyNe~-~~---E~~~Fqsn~~l~~kiv~~~~~~lndS~A~--f~vq~~~ 372 (975)
T KOG2419|consen 304 KDKWLAITSFGE-----QTFRTEISDDTEKPIYNED-ER---EDSDFQSNRYLGNKIVGYCELDLNDSYAN--FVVQRAK 372 (975)
T ss_pred CCCchheeecch-----hhhhhhhhccccccccccc-cc---ccccchhhHHHhhhccccccccccchhhh--hhhhhhh
Q ss_pred CCCccceEeecccCCCCCccccccccccccccceeEEeeeccccccceeeccccccccccCCC-----CCCCCceEEEEe
Q psy7848 583 PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-----NGFSDPFIKLYL 657 (754)
Q Consensus 583 ~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-----~G~sDPYVKV~L 657 (754)
.+ .+...++... +.+.+..-.-.||++... +-..|||..+.+
T Consensus 373 sn-----------~~~~~pE~~~----------------------~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~v 419 (975)
T KOG2419|consen 373 SN-----------FFISEPESTC----------------------KSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVV 419 (975)
T ss_pred cc-----------ccccCccccc----------------------eEEEeecCCcccchhhhhccCccccccCchhHhhh
Q ss_pred cCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCC
Q psy7848 658 KPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 737 (754)
Q Consensus 658 ~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P 737 (754)
++..+++.+-..+.+|.+++.-.|.+..-++. -.+.|.+++...+.=++.+..+.+. |++|+ +-
T Consensus 420 ----G~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~-fk~sf~~~~~l~~~F~~vvaa~~~~----------~~D~~-~~ 483 (975)
T KOG2419|consen 420 ----GSRFFSCSIEDPVETEECFAKRILSIVDYEED-FKLSFSEFSDLSFAFGNVVAANKLA----------WFDML-NE 483 (975)
T ss_pred ----hhHHhhhhhhccccchhhhhhhcccccccccC-ceEeeehHHHHHHHHHHHHHhhhcc----------hhhhc-cc
Q ss_pred CcceeeEEeecCCCCC
Q psy7848 738 DHKHEGIHNLSIKPLS 753 (754)
Q Consensus 738 ~~~ie~Wh~L~~~~~~ 753 (754)
......=..|...|-|
T Consensus 484 k~~~~~~lDl~g~~~~ 499 (975)
T KOG2419|consen 484 KEELFKALDLNGDPAH 499 (975)
T ss_pred chhheehhhccCCccc
No 370
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=33.67 E-value=5.7 Score=31.45 Aligned_cols=48 Identities=21% Similarity=0.598 Sum_probs=36.9
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
+...|-+|..++. + .--++|.-|.+.-|..|-. +..++|+-|.-...+
T Consensus 6 sry~CDLCn~~~p-------~--~~LRQCvlCGRWaC~sCW~--------deYY~CksC~Gii~l 53 (57)
T PF14445_consen 6 SRYSCDLCNSSHP-------I--SELRQCVLCGRWACNSCWQ--------DEYYTCKSCNGIINL 53 (57)
T ss_pred hhHhHHhhcccCc-------H--HHHHHHhhhchhhhhhhhh--------hhHhHHHhhhchhhh
Confidence 4478999999887 2 2257999999999999975 446899999865543
No 371
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=33.44 E-value=31 Score=28.41 Aligned_cols=45 Identities=27% Similarity=0.640 Sum_probs=29.4
Q ss_pred ccccccccccCCCccccccccC-CCCccccccccc---cccccccccccCCCCCCceeeccch
Q psy7848 135 AHACALCGDKFSPIFDRLGLFG-AKCLVCHDCRGG---VCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~-~~~~~C~~C~~~---vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
...|.-|+..+- ..+ ...-.|.+|... -|.+|+.... .+.|.-|.
T Consensus 7 ~~~CtSCg~~i~-------~~~~~~~F~CPnCG~~~I~RC~~CRk~~~-------~Y~CP~CG 55 (59)
T PRK14890 7 PPKCTSCGIEIA-------PREKAVKFLCPNCGEVIIYRCEKCRKQSN-------PYTCPKCG 55 (59)
T ss_pred CccccCCCCccc-------CCCccCEeeCCCCCCeeEeechhHHhcCC-------ceECCCCC
Confidence 367999999887 454 556677777643 3666666553 46666554
No 372
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=33.36 E-value=16 Score=25.95 Aligned_cols=24 Identities=33% Similarity=0.945 Sum_probs=9.6
Q ss_pred cccccccccCCCccccccccCCCCccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCR 166 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~ 166 (754)
..|.+|+..+. +.++.-.+|.+|.
T Consensus 3 p~Cp~C~se~~-------y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 3 PKCPLCGSEYT-------YEDGELLVCPECG 26 (30)
T ss_dssp ---TTT------------EE-SSSEEETTTT
T ss_pred CCCCCCCCcce-------eccCCEEeCCccc
Confidence 56999999999 6665555555554
No 373
>KOG1329|consensus
Probab=33.31 E-value=90 Score=38.70 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=58.7
Q ss_pred CCcEEEEEEeCCCCCceEEEeeeecCC-CCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 506 SDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 506 sDPYVkv~Llp~~~~~~~~rTkvi~~T-lNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
.++|+.+.|. .....+|..+.+. .+|.|.+.|... ... ....+.+.|-+.+..|. .++|.+.+++..+..
T Consensus 138 ~e~Ylt~~l~----~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h---~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 138 LENYLTVVLH----KARYRRTHVIYEFLENSRWSFSFDIG-FAH---KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred ccchheeeec----hhhhhchhhhhcccccchhhhhcccc-ccc---cccEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 4889988885 3355677777776 789999998652 222 23788999999999994 999999999998877
Q ss_pred CCccceEeec
Q psy7848 584 HISRDLCLNL 593 (754)
Q Consensus 584 ~~~~~~~~~L 593 (754)
+.....++.+
T Consensus 210 ~~~~~~~~~I 219 (887)
T KOG1329|consen 210 GHRIGGWFPI 219 (887)
T ss_pred cccccceeee
Confidence 6444444443
No 374
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=33.10 E-value=1.2e+02 Score=29.71 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhHH
Q psy7848 84 KPEPLDPTEQEKIEEVIKRAEA 105 (754)
Q Consensus 84 ~~~~Lt~~E~e~I~~Vl~R~~~ 105 (754)
..+.||.+|.+.|.+-|+||-+
T Consensus 29 ~~~elT~eEl~lv~~ylkRDl~ 50 (146)
T PF07295_consen 29 AAGELTREELALVSAYLKRDLE 50 (146)
T ss_pred HHhhcCHHHHHHHHHHHHHHHH
Confidence 4579999999999999999954
No 375
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=32.97 E-value=87 Score=26.51 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhh
Q psy7848 85 PEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRN 127 (754)
Q Consensus 85 ~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~ 127 (754)
...++++.++.|.++|..|+++...=+.|...|+.+|..+++.
T Consensus 35 ~~~~~~~~~~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~ 77 (84)
T PF05400_consen 35 SPPEQEELRELLRRILELDQEIRALLQARRDELKQELRQLRKG 77 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred ChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999999999999999999999888765
No 376
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=32.96 E-value=58 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=18.1
Q ss_pred ccccccccccCCCccccccccCCCCcccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
...|.-||++.. ..| ..+......|..|+.
T Consensus 34 ~~~C~~Cg~~Ip--~~R-l~a~p~~~~Cv~Cq~ 63 (73)
T PRK13715 34 VYLCEACGNPIP--EAR-RKIFPGVTLCVECQA 63 (73)
T ss_pred cccHhhcCCcCC--HHH-HhcCCCcCCCHHHHH
Confidence 368999999887 233 112233555777753
No 377
>PRK11019 hypothetical protein; Provisional
Probab=32.79 E-value=49 Score=29.56 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=17.3
Q ss_pred cccccccccCCCccccccccCCCCcccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
..|..|+.+.. +.| ..+......|.+|+.
T Consensus 37 g~C~~CG~~Ip--~~R-l~A~P~a~~Cv~Cq~ 65 (88)
T PRK11019 37 TECEECGEPIP--EAR-RKAIPGVRLCVACQQ 65 (88)
T ss_pred CeeCcCCCcCc--HHH-HhhcCCccccHHHHH
Confidence 68999998887 233 113333555666653
No 378
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=32.45 E-value=11 Score=32.18 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=23.2
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhhhhhhcc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSN 203 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG 203 (754)
..|..|+++|. .-+ .++.|..|.... ...-+|.-|++.-|+.+.-|
T Consensus 2 ~~CP~C~~~L~-------~~~---------~~~~C~~C~~~~------~~~a~CPdC~~~Le~LkACG 47 (70)
T PF07191_consen 2 NTCPKCQQELE-------WQG---------GHYHCEACQKDY------KKEAFCPDCGQPLEVLKACG 47 (70)
T ss_dssp -B-SSS-SBEE-------EET---------TEEEETTT--EE------EEEEE-TTT-SB-EEEEETT
T ss_pred CcCCCCCCccE-------EeC---------CEEECccccccc------eecccCCCcccHHHHHHHhc
Confidence 56888888877 222 345555555555 24566777777777766666
No 379
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=32.37 E-value=22 Score=27.51 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=6.6
Q ss_pred CCceeeccchh
Q psy7848 184 ENIWLCKICAE 194 (754)
Q Consensus 184 ~~~WlC~vC~~ 194 (754)
...|.|+-|..
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 35666666654
No 380
>KOG2932|consensus
Probab=31.90 E-value=20 Score=38.87 Aligned_cols=56 Identities=21% Similarity=0.550 Sum_probs=37.5
Q ss_pred ccccccccccCCCccccccccCCCCcccccccc----cccccccccccc--CCCCCCceeeccch
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRG----GVCQKCGIESVS--ASKKENIWLCKICA 193 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~----~vC~~C~~~~~~--~~~~~~~WlC~vC~ 193 (754)
...|-+|..+.. ||.| ++--..++|.+|-+ ++|-.|.-.+-. ...-..+++|..-+
T Consensus 90 VHfCd~Cd~PI~-IYGR--mIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq~~~g~iFmC~~~~ 151 (389)
T KOG2932|consen 90 VHFCDRCDFPIA-IYGR--MIPCKHVFCLECARSDSDKICPLCDDRVQRIEQIMMGGIFMCAAPH 151 (389)
T ss_pred eEeecccCCcce-eeec--ccccchhhhhhhhhcCccccCcCcccHHHHHHHhcccceEEeecch
Confidence 489999999987 7778 77666778888864 377777654421 11135577777543
No 381
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=31.73 E-value=6.7 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.509 Sum_probs=28.7
Q ss_pred ccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 137 ~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
.|.+|.+.|. .+....... |+|..|..|-..... ....|.+|+
T Consensus 2 ~C~IC~~~~~--------~~~~~~~l~-C~H~fh~~Ci~~~~~-----~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFE--------DGEKVVKLP-CGHVFHRSCIKEWLK-----RNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHH--------TTSCEEEET-TSEEEEHHHHHHHHH-----HSSB-TTTH
T ss_pred CCcCCChhhc--------CCCeEEEcc-CCCeeCHHHHHHHHH-----hCCcCCccC
Confidence 5999999997 233334444 999999999776641 123787774
No 382
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=31.33 E-value=32 Score=27.66 Aligned_cols=37 Identities=24% Similarity=0.505 Sum_probs=23.4
Q ss_pred cccccc--ccccCCCccccccccCCCC--cccccccccccccccccc
Q psy7848 135 AHACAL--CGDKFSPIFDRLGLFGAKC--LVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 135 ~~~C~~--C~~~~g~~~~~~~~~~~~~--~~C~~C~~~vC~~C~~~~ 177 (754)
-+.|.. |+..+.. -.+... +.|..|+...|..|+..-
T Consensus 18 ~~~Cp~~~C~~~~~~------~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEK------DDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp CC--TTSST---ECS-------SSTTS--CCTTSCCSEECSSSTSES
T ss_pred ccCCCCCCCcccEEe------cCCCCCCeeECCCCCCcCccccCccc
Confidence 379988 9998882 222223 799999999999999864
No 383
>KOG0694|consensus
Probab=31.17 E-value=20 Score=42.92 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=42.8
Q ss_pred CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCc
Q psy7848 504 GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 579 (754)
Q Consensus 504 g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~ 579 (754)
...+||+-|.+.- .....+.+...+..|.|+++|.+. +.. ...+.|.|++...... .+...+.+-..
T Consensus 26 ~al~~y~~v~vk~----~~~~~~~~~~~~~~~~~~~~F~~~-v~~----~~~~~i~v~~~~~~~~~~~~a~~~~~~e 93 (694)
T KOG0694|consen 26 QALQPYLAVELKV----KQGAENMTKVELRIPELRETFHVE-VVA----GGAKNIIVLLKSPDPKALSEAQLSLQEE 93 (694)
T ss_pred hhhhhhheeccce----eecccccCCCCCCCchhhhheeee-eec----CCceEEEEEecCCcchhhHHHhHHHHHH
Confidence 3468999888842 123345557789999999999874 332 3678899998764433 33434444333
No 384
>PRK05580 primosome assembly protein PriA; Validated
Probab=31.09 E-value=35 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=13.3
Q ss_pred cccccccccccCCCCCCceeeccchhh
Q psy7848 169 VCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 169 vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
.|.-||... ...|.|..|...
T Consensus 410 ~Ch~Cg~~~------~~~~~Cp~Cg~~ 430 (679)
T PRK05580 410 RCHHCGYQE------PIPKACPECGST 430 (679)
T ss_pred ECCCCcCCC------CCCCCCCCCcCC
Confidence 466666544 346888888554
No 385
>PRK11032 hypothetical protein; Provisional
Probab=30.59 E-value=1.3e+02 Score=29.82 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHH
Q psy7848 84 KPEPLDPTEQEKIEEVIKRAEAL 106 (754)
Q Consensus 84 ~~~~Lt~~E~e~I~~Vl~R~~~l 106 (754)
..+.||.+|.+.|.+-|+||-+-
T Consensus 39 ~~~elT~dEl~lv~~ylkRDL~e 61 (160)
T PRK11032 39 AAGELTRDEVDLITRAVRRDLEE 61 (160)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999653
No 386
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.56 E-value=15 Score=41.57 Aligned_cols=59 Identities=22% Similarity=0.502 Sum_probs=39.4
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccc
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKV 209 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~ 209 (754)
..-.|.+|...|. .-+-..|.|..|..|-.... ...-.|.+|...-....---.|+.++
T Consensus 25 ~~l~C~IC~d~~~------------~PvitpCgH~FCs~CI~~~l-----~~~~~CP~Cr~~~~~~~Lr~N~~L~~ 83 (397)
T TIGR00599 25 TSLRCHICKDFFD------------VPVLTSCSHTFCSLCIRRCL-----SNQPKCPLCRAEDQESKLRSNWLVSE 83 (397)
T ss_pred cccCCCcCchhhh------------CccCCCCCCchhHHHHHHHH-----hCCCCCCCCCCccccccCccchHHHH
Confidence 3489999998776 33346899999999988764 12347999987643322223455553
No 387
>PF12773 DZR: Double zinc ribbon
Probab=30.22 E-value=33 Score=26.65 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=7.8
Q ss_pred ccccccccccCC
Q psy7848 135 AHACALCGDKFS 146 (754)
Q Consensus 135 ~~~C~~C~~~~g 146 (754)
.+.|..||..+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 366666666666
No 388
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=29.88 E-value=33 Score=32.74 Aligned_cols=34 Identities=21% Similarity=0.575 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccccccccccccCC
Q psy7848 110 EQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 110 E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
|..||++|+.-+-.+..-... ..-+|..|+..+.
T Consensus 75 ~~~ri~~L~~~i~~~~pv~~~---~~W~Cv~C~~~Y~ 108 (128)
T PF11682_consen 75 ERRRIKRLRRMIADLDPVPRK---TDWHCVMCGNHYH 108 (128)
T ss_pred hHHHHHHHHHhccccCCCCcC---ceEEEecCCCccC
Confidence 456777777776665554322 2478999999988
No 389
>KOG2593|consensus
Probab=29.06 E-value=37 Score=38.54 Aligned_cols=30 Identities=17% Similarity=0.597 Sum_probs=18.5
Q ss_pred HHHHHHHHHH-hhhhccCCCccccccccccccCC
Q psy7848 114 VGRLVERVDN-MKRNVTGGAAAAHACALCGDKFS 146 (754)
Q Consensus 114 i~~L~~~l~~-~k~~~~~~~~~~~~C~~C~~~~g 146 (754)
|-+|+++|++ ++.... .....|..|+++|.
T Consensus 109 lh~m~krled~~~d~t~---~~~Y~Cp~C~kkyt 139 (436)
T KOG2593|consen 109 LHQMRKRLEDRLRDDTN---VAGYVCPNCQKKYT 139 (436)
T ss_pred HHHHHHHHHHHhhhccc---cccccCCccccchh
Confidence 4456666644 233322 23489999999988
No 390
>KOG0954|consensus
Probab=29.01 E-value=62 Score=39.12 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=41.5
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
.+-.|-.|+.+=+ =-++.-++|-.|+-.|=+.|-.-+-. +++.|||.-|...
T Consensus 270 edviCDvCrspD~-------e~~neMVfCd~Cn~cVHqaCyGIle~---p~gpWlCr~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPDS-------EEANEMVFCDKCNICVHQACYGILEV---PEGPWLCRTCALG 321 (893)
T ss_pred ccceeceecCCCc-------cccceeEEeccchhHHHHhhhceeec---CCCCeeehhcccc
Confidence 5689999999877 46677888988888888888765532 5789999999865
No 391
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.49 E-value=21 Score=41.80 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=13.2
Q ss_pred ccccccccccccCCCCCCceeeccchhh
Q psy7848 168 GVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 168 ~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
..|.-||... ...|.|.-|...
T Consensus 241 l~Ch~Cg~~~------~~~~~Cp~C~s~ 262 (505)
T TIGR00595 241 LRCHYCGYQE------PIPKTCPQCGSE 262 (505)
T ss_pred EEcCCCcCcC------CCCCCCCCCCCC
Confidence 3466666544 245778887553
No 392
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=28.48 E-value=30 Score=28.09 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.3
Q ss_pred ccccccccccc
Q psy7848 167 GGVCQKCGIES 177 (754)
Q Consensus 167 ~~vC~~C~~~~ 177 (754)
|+||..||.|.
T Consensus 39 H~vc~~cG~Y~ 49 (55)
T TIGR01031 39 HRVCPSCGYYK 49 (55)
T ss_pred eeECCccCeEC
Confidence 88999999775
No 393
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=28.34 E-value=29 Score=28.38 Aligned_cols=23 Identities=35% Similarity=0.817 Sum_probs=18.0
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
..|..||+..-. |+||..||.|.
T Consensus 28 ~~C~~CG~~~~~-------------------H~vC~~CG~Y~ 50 (57)
T PRK12286 28 VECPNCGEPKLP-------------------HRVCPSCGYYK 50 (57)
T ss_pred eECCCCCCccCC-------------------eEECCCCCcCC
Confidence 668888877762 88999999776
No 394
>KOG1841|consensus
Probab=28.34 E-value=32 Score=43.29 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=42.7
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccC--CCCCCceeeccc---hhhhhhhhhccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSA--SKKENIWLCKIC---AETREMWKKSNAWFFK 208 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~--~~~~~~WlC~vC---~~~rel~~~sG~Wf~~ 208 (754)
...|.-|++.|. ..++++-|..|.+-.|..|+-+-... -.....-+|.|| +-..+|..+.|-=.-.
T Consensus 557 ~pncm~clqkft--------~ikrrhhcRacgkVlcgvccnek~~leyl~e~~~rv~nV~s~~~~~~~m~~r~~~~lk~ 627 (1287)
T KOG1841|consen 557 APNCMDCLQKFT--------PIKRRHHCRACGKVLCGVCCNEKSALEYLSESEGRVSNVDSLESPEAEMSTRPGLALKP 627 (1287)
T ss_pred CchHHHHHhhcc--------cccccccchhccceeehhhcchhhhhhhcCcccccccccccccCccHhhccCcccccCC
Confidence 378999999999 67889999999999999987654310 001223456655 4444455554443333
No 395
>KOG4424|consensus
Probab=27.49 E-value=15 Score=42.95 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=10.3
Q ss_pred CCCCcccccccccccccccccc
Q psy7848 156 GAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 156 ~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
.+....|.-|+...|+.|-...
T Consensus 412 ~~k~~~c~~c~e~~~s~t~~R~ 433 (623)
T KOG4424|consen 412 DNKVTSCDSCEETFNSITFRRH 433 (623)
T ss_pred ccccccchhhcCchhhHHHhhh
Confidence 4444445555555444444433
No 396
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=27.37 E-value=5.1e+02 Score=25.22 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=57.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc---------ccCcceEE
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET---------DLSLQSLH 557 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~---------el~~~~L~ 557 (754)
|+|+-+.|-+.- .....|-|..|++++ +..+|+-.....-=.|+|.|.|..+... .|....+.
T Consensus 4 L~i~aVTCPGv~---L~~~~~vyL~v~~lg-----~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~ 75 (140)
T PF14909_consen 4 LEIHAVTCPGVW---LCDKGDVYLSVCILG-----QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVY 75 (140)
T ss_pred EEEEEEecCCeE---eCCCCCEEEEEEEcc-----cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEE
Confidence 556666665442 234568999999986 6677875544333346899998654432 23468889
Q ss_pred EEEeeCCCCCCccceeeeecCcccC
Q psy7848 558 ILVLDDDKYGHDFLGEARFPLNRLR 582 (754)
Q Consensus 558 ~sV~D~d~~g~dfLGev~I~L~~L~ 582 (754)
|+++.........|+...-.+.++.
T Consensus 76 iELiQl~~~~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 76 IELIQLVPPAGEILAYYEENTRDFL 100 (140)
T ss_pred EEEEEEeCCCCcEEEEEeccccceE
Confidence 9998876654566777777666653
No 397
>PRK11823 DNA repair protein RadA; Provisional
Probab=27.29 E-value=27 Score=40.31 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=20.8
Q ss_pred cccccccccccccCCCCCCceeeccchhhh
Q psy7848 167 GGVCQKCGIESVSASKKENIWLCKICAETR 196 (754)
Q Consensus 167 ~~vC~~C~~~~~~~~~~~~~WlC~vC~~~r 196 (754)
.++|+.||...+ .-.|.|.-|.+=-
T Consensus 7 ~y~C~~Cg~~~~-----~~~g~Cp~C~~w~ 31 (446)
T PRK11823 7 AYVCQECGAESP-----KWLGRCPECGAWN 31 (446)
T ss_pred eEECCcCCCCCc-----ccCeeCcCCCCcc
Confidence 589999999885 7799999997533
No 398
>PLN03131 hypothetical protein; Provisional
Probab=27.09 E-value=54 Score=38.91 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=24.5
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
+++.|+-|+..-- .-.|..-.-.||-.|...+.
T Consensus 22 gNk~CADCga~~P------------~WASiNlGIFICi~CSGIHR 54 (705)
T PLN03131 22 PNRRCINCNSLGP------------QFVCTNFWTFICMTCSGIHR 54 (705)
T ss_pred CCCccccCCCCCC------------CeeEeccceEEchhchhhhc
Confidence 3488999986533 56677777888888887765
No 399
>KOG2114|consensus
Probab=26.94 E-value=80 Score=38.83 Aligned_cols=55 Identities=5% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccC----CC-ccccccccccccCCC
Q psy7848 93 QEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTG----GA-AAAHACALCGDKFSP 147 (754)
Q Consensus 93 ~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~----~~-~~~~~C~~C~~~~g~ 147 (754)
+..|..+|+..+..=+..+++|+.-+++++++|+.... .+ .-...|--|.-+|-.
T Consensus 793 kD~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~Ldl 852 (933)
T KOG2114|consen 793 KDYIIKWLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDL 852 (933)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCcccc
Confidence 56778888877777777777888888888887777621 11 133799999999883
No 400
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=26.76 E-value=68 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.361 Sum_probs=38.0
Q ss_pred ccccccccccccCCCccccccccCCCCcccccccccccccccccccc----------CCCCCCceeeccchhhhhhhhhc
Q psy7848 133 AAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS----------ASKKENIWLCKICAETREMWKKS 202 (754)
Q Consensus 133 ~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~----------~~~~~~~WlC~vC~~~rel~~~s 202 (754)
.....|.-|+.... ++.-|+.+.|..|+..... ..-+.-.|+=++-.+-+.++..-
T Consensus 40 ~~~~~C~~Cg~~~~--------------~~~SCk~R~CP~C~~~~~~~W~~~~~~~ll~~~y~HvVFTlP~~L~~~~~~n 105 (111)
T PF14319_consen 40 FHRYRCEDCGHEKI--------------VYNSCKNRHCPSCQAKATEQWIEKQREDLLPVPYFHVVFTLPHELRPLFRQN 105 (111)
T ss_pred cceeecCCCCceEE--------------ecCcccCcCCCCCCChHHHHHHHHHHhhCCCCCeEEEEEcCcHHHHHHHHHC
Confidence 34589999987765 6778999999999987641 00011234445555555555555
Q ss_pred ccccc
Q psy7848 203 NAWFF 207 (754)
Q Consensus 203 G~Wf~ 207 (754)
-+|+|
T Consensus 106 ~~~ly 110 (111)
T PF14319_consen 106 RRLLY 110 (111)
T ss_pred HHHhc
Confidence 44444
No 401
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=26.66 E-value=13 Score=30.05 Aligned_cols=30 Identities=30% Similarity=0.685 Sum_probs=18.9
Q ss_pred ccccccccccCCCccccccccCCC------Cccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAK------CLVCHDCR 166 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~------~~~C~~C~ 166 (754)
+.+|-|||+++..+- .++++.- |.+|-+|-
T Consensus 10 ~t~CrRCGk~i~tl~--~SL~Gad~lr~klG~IC~~Ci 45 (60)
T PF10892_consen 10 ETPCRRCGKSIRTLS--RSLIGADDLRVKLGGICGDCI 45 (60)
T ss_pred eehhhhhCccHHHHH--HHhhChHHHHHHHcchhhccC
Confidence 478999999976321 1233332 67777774
No 402
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.53 E-value=34 Score=31.69 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=6.7
Q ss_pred cccccccccCC
Q psy7848 136 HACALCGDKFS 146 (754)
Q Consensus 136 ~~C~~C~~~~g 146 (754)
|.|.-||+.|-
T Consensus 10 R~Cp~CG~kFY 20 (108)
T PF09538_consen 10 RTCPSCGAKFY 20 (108)
T ss_pred ccCCCCcchhc
Confidence 56666666655
No 403
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.35 E-value=37 Score=32.29 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=5.0
Q ss_pred cccccccccCC
Q psy7848 136 HACALCGDKFS 146 (754)
Q Consensus 136 ~~C~~C~~~~g 146 (754)
+.|.-||+.|-
T Consensus 10 r~Cp~cg~kFY 20 (129)
T TIGR02300 10 RICPNTGSKFY 20 (129)
T ss_pred ccCCCcCcccc
Confidence 44444444444
No 404
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=26.08 E-value=33 Score=28.13 Aligned_cols=23 Identities=39% Similarity=0.847 Sum_probs=17.8
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
..|.-||+..-+ |+||..||.+.
T Consensus 28 ~~c~~cG~~~l~-------------------Hrvc~~cg~Y~ 50 (57)
T COG0333 28 SVCPNCGEYKLP-------------------HRVCLKCGYYK 50 (57)
T ss_pred eeccCCCCcccC-------------------ceEcCCCCCcc
Confidence 778888887773 78888888765
No 405
>KOG2807|consensus
Probab=25.58 E-value=28 Score=38.01 Aligned_cols=35 Identities=23% Similarity=0.642 Sum_probs=28.9
Q ss_pred ccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 154 LFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 154 ~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
+++..+-+|..|+...|-.|-++. .+..-.|.-|.
T Consensus 340 ~~~~~~y~C~~Ck~~FCldCDv~i-----HesLh~CpgCe 374 (378)
T KOG2807|consen 340 LLSSGRYRCESCKNVFCLDCDVFI-----HESLHNCPGCE 374 (378)
T ss_pred cCCCCcEEchhccceeeccchHHH-----HhhhhcCCCcC
Confidence 456678899999999999999998 36777787775
No 406
>KOG4185|consensus
Probab=25.15 E-value=32 Score=37.16 Aligned_cols=53 Identities=28% Similarity=0.675 Sum_probs=38.8
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
-.|..|...|.-. .|....+.. .|+|.+|..|...+. ....|+|..|.+..++
T Consensus 4 ~~c~~c~~~~s~~---~~~~~p~~l---~c~h~~c~~c~~~l~----~~~~i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 4 PECEICNEDYSSE---DGDHIPRVL---KCGHTICQNCASKLL----GNSRILCPFCRETTEI 56 (296)
T ss_pred CceeecCcccccc---CcccCCccc---ccCceehHhHHHHHh----cCceeeccCCCCcccC
Confidence 4699999999832 111222222 399999999999998 5789999999988644
No 407
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.12 E-value=1.3e+02 Score=31.93 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=5.4
Q ss_pred CCceeeccchh
Q psy7848 184 ENIWLCKICAE 194 (754)
Q Consensus 184 ~~~WlC~vC~~ 194 (754)
+.+-.|.-|..
T Consensus 219 d~iv~CP~CgR 229 (239)
T COG1579 219 DEIVFCPYCGR 229 (239)
T ss_pred CCCccCCccch
Confidence 44455555543
No 408
>KOG0320|consensus
Probab=24.78 E-value=18 Score=36.34 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=36.0
Q ss_pred cccccccccccCCCccccccccCCCCc-cccccccccccccccccccCCCCCCceeeccchh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCL-VCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~-~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
+-.-|.+|...+.- .. +=-.|+|-.|+.|-.... ...-.|.+|++
T Consensus 130 ~~~~CPiCl~~~se-----------k~~vsTkCGHvFC~~Cik~al-----k~~~~CP~C~k 175 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE-----------KVPVSTKCGHVFCSQCIKDAL-----KNTNKCPTCRK 175 (187)
T ss_pred cccCCCceecchhh-----------ccccccccchhHHHHHHHHHH-----HhCCCCCCccc
Confidence 34889999999882 22 446899999999998885 56788999997
No 409
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.65 E-value=40 Score=22.35 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=4.3
Q ss_pred cccccccCC
Q psy7848 138 CALCGDKFS 146 (754)
Q Consensus 138 C~~C~~~~g 146 (754)
|..||..+-
T Consensus 2 Cp~CG~~~~ 10 (23)
T PF13240_consen 2 CPNCGAEIE 10 (23)
T ss_pred CcccCCCCC
Confidence 445555443
No 410
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=24.51 E-value=32 Score=27.25 Aligned_cols=45 Identities=22% Similarity=0.585 Sum_probs=22.8
Q ss_pred cccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchh
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
|.+|-+.+. ..+..-..| .|...||.-|=.... .+..-+|.-|.+
T Consensus 1 cp~C~e~~d-------~~d~~~~PC-~Cgf~IC~~C~~~i~----~~~~g~CPgCr~ 45 (48)
T PF14570_consen 1 CPLCDEELD-------ETDKDFYPC-ECGFQICRFCYHDIL----ENEGGRCPGCRE 45 (48)
T ss_dssp -TTTS-B---------CCCTT--SS-TTS----HHHHHHHT----TSS-SB-TTT--
T ss_pred CCCcccccc-------cCCCccccC-cCCCcHHHHHHHHHH----hccCCCCCCCCC
Confidence 667877776 456666788 899999999977774 245677887765
No 411
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.39 E-value=37 Score=27.51 Aligned_cols=31 Identities=32% Similarity=0.874 Sum_probs=21.3
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC 173 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C 173 (754)
...|..|+++|. .+.-.++|.+|+-..=+.|
T Consensus 5 ~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCccc--------CCCCEEECCCCCCcccHHH
Confidence 368999999996 4556778888874433333
No 412
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=24.19 E-value=38 Score=27.46 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=17.0
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
-..|..||+..-. |+||..||.|-
T Consensus 26 l~~c~~cg~~~~~-------------------H~vc~~cG~y~ 49 (56)
T PF01783_consen 26 LVKCPNCGEPKLP-------------------HRVCPSCGYYK 49 (56)
T ss_dssp EEESSSSSSEEST-------------------TSBCTTTBBSS
T ss_pred eeeeccCCCEecc-------------------cEeeCCCCeEC
Confidence 3678888866552 78888887654
No 413
>KOG1814|consensus
Probab=24.03 E-value=1.6e+02 Score=33.48 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhHHHhHHHHHHHH-----HHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCcccccc
Q psy7848 91 TEQEKIEEVIKRAEALDYIEQERVG-----RLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDC 165 (754)
Q Consensus 91 ~E~e~I~~Vl~R~~~l~~~E~~Ri~-----~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C 165 (754)
.+.+..++-++-|++-....++|-| .++++.+..++-. .+..+|.-|....-+ . .+|
T Consensus 323 ~~~~l~~~~~~~d~a~k~ele~Ryg~rvve~~vn~~lsekwl~----~N~krCP~C~v~IEr-------~-------eGC 384 (445)
T KOG1814|consen 323 KLIELYLEYLEADEARKRELEKRYGKRVVEELVNDFLSEKWLE----SNSKRCPKCKVVIER-------S-------EGC 384 (445)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hcCCCCCcccceeec-------C-------CCc
Confidence 3444555555555544444445544 4555555544432 234899999988772 2 247
Q ss_pred cccccccccccc
Q psy7848 166 RGGVCQKCGIES 177 (754)
Q Consensus 166 ~~~vC~~C~~~~ 177 (754)
.|.+|..|+.+.
T Consensus 385 nKM~C~~c~~~f 396 (445)
T KOG1814|consen 385 NKMHCTKCGTYF 396 (445)
T ss_pred cceeeccccccc
Confidence 778888887765
No 414
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.02 E-value=32 Score=26.50 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=3.9
Q ss_pred ceeeccch
Q psy7848 186 IWLCKICA 193 (754)
Q Consensus 186 ~WlC~vC~ 193 (754)
.+.|..|.
T Consensus 21 ~~~Cp~CG 28 (46)
T PRK00398 21 GVRCPYCG 28 (46)
T ss_pred ceECCCCC
Confidence 45555554
No 415
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=24.01 E-value=24 Score=37.94 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHHH
Q psy7848 83 KKPEPLDPTEQEKIEE 98 (754)
Q Consensus 83 ~~~~~Lt~~E~e~I~~ 98 (754)
++...||++|.+.|..
T Consensus 188 ~~~~~l~~~~~~~l~~ 203 (272)
T PRK14810 188 RLASSLSRERLRKLHD 203 (272)
T ss_pred CCcccCCHHHHHHHHH
Confidence 5678999999887765
No 416
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.83 E-value=24 Score=28.30 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=26.5
Q ss_pred cccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
|--|+.+|...-+. ..+...-.|..|++..|-.|=++. .+..-.|.-|.
T Consensus 2 CfgC~~~~~~~~~~--~~~~~~y~C~~C~~~FC~dCD~fi-----HE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEK--KADSSRYRCPKCKNHFCIDCDVFI-----HETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS---------EEE--TTTT--B-HHHHHTT-----TTTS-SSSTT-
T ss_pred CccCCCCCCCcccc--cccCCeEECCCCCCccccCcChhh-----hccccCCcCCC
Confidence 67788888821000 001246899999999999999998 47777777664
No 417
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=23.77 E-value=52 Score=26.24 Aligned_cols=14 Identities=29% Similarity=0.978 Sum_probs=8.6
Q ss_pred cccccccccCCCcc
Q psy7848 136 HACALCGDKFSPIF 149 (754)
Q Consensus 136 ~~C~~C~~~~g~~~ 149 (754)
+.|..|+.+...+.
T Consensus 4 ~~C~~C~~~~T~~W 17 (52)
T smart00401 4 RSCSNCGTTETPLW 17 (52)
T ss_pred CCcCCCCCCCCCcc
Confidence 56777776666433
No 418
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=23.77 E-value=71 Score=31.90 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=11.8
Q ss_pred HHHHHHHhh----HHHhHHHHHHH--HHHHHHHHHhhhhc
Q psy7848 95 KIEEVIKRA----EALDYIEQERV--GRLVERVDNMKRNV 128 (754)
Q Consensus 95 ~I~~Vl~R~----~~l~~~E~~Ri--~~L~~~l~~~k~~~ 128 (754)
...++|+|. ++|+++|.-|| .||++||.+||...
T Consensus 8 klN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 8 KLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665 45556665554 79999999999886
No 419
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.70 E-value=27 Score=42.36 Aligned_cols=10 Identities=30% Similarity=0.963 Sum_probs=6.7
Q ss_pred ceeeccchhh
Q psy7848 186 IWLCKICAET 195 (754)
Q Consensus 186 ~WlC~vC~~~ 195 (754)
.|.|.-|...
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 5777777544
No 420
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.57 E-value=39 Score=42.32 Aligned_cols=31 Identities=26% Similarity=0.690 Sum_probs=25.0
Q ss_pred Cccccccccc----cccccccccccCCCCCCceeeccchhh
Q psy7848 159 CLVCHDCRGG----VCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 159 ~~~C~~C~~~----vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
...|..|... .|..||..+ ...|.|.-|...
T Consensus 626 ~RfCpsCG~~t~~frCP~CG~~T------e~i~fCP~CG~~ 660 (1121)
T PRK04023 626 RRKCPSCGKETFYRRCPFCGTHT------EPVYRCPRCGIE 660 (1121)
T ss_pred CccCCCCCCcCCcccCCCCCCCC------CcceeCccccCc
Confidence 5689999865 899999886 578999999443
No 421
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=23.44 E-value=27 Score=31.29 Aligned_cols=21 Identities=24% Similarity=0.593 Sum_probs=16.4
Q ss_pred CCceeeccchhhhhhhhhccccccc
Q psy7848 184 ENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 184 ~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
-++|.|+-|.+. ..-|+|-+.
T Consensus 51 ~GIW~C~~C~~~----~AGGAy~p~ 71 (91)
T TIGR00280 51 TGIWTCRKCGAK----FAGGAYTPV 71 (91)
T ss_pred eEEEEcCCCCCE----EeCCccccc
Confidence 468999999874 567888877
No 422
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.42 E-value=1.1e+02 Score=26.44 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHH
Q psy7848 83 KKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERV 121 (754)
Q Consensus 83 ~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l 121 (754)
+.+..|+++|.+.+.+..++++.|+ +||.-|..=|
T Consensus 31 ~~~~~ls~~d~~~L~~L~~~a~rm~----eRI~tLE~IL 65 (75)
T TIGR02976 31 KTAASLSTDDQALLQELYAKADRLE----ERIDTLERIL 65 (75)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3445799999999999999998875 4666555443
No 423
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=23.29 E-value=25 Score=38.00 Aligned_cols=53 Identities=23% Similarity=0.595 Sum_probs=39.3
Q ss_pred cccccccccccCCC----ccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 134 AAHACALCGDKFSP----IFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 134 ~~~~C~~C~~~~g~----~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
-..+|-.|+-+|-. -||+ .+....-+|.+|+...|..|-++.- +..-.|--|.
T Consensus 361 ks~~Cf~CQ~~fp~~~~~~~~~--~~ss~rY~Ce~CK~~FC~dCdvfiH-----e~Lh~C~gCe 417 (421)
T COG5151 361 KSTHCFVCQGPFPKPPVSPFDE--STSSGRYQCELCKSTFCSDCDVFIH-----ETLHFCIGCE 417 (421)
T ss_pred CCccceeccCCCCCCCCCcccc--cccccceechhhhhhhhhhhHHHHH-----HHHhhCCCCc
Confidence 34779999997652 1234 4445577999999999999999983 6667777774
No 424
>KOG1829|consensus
Probab=23.29 E-value=33 Score=40.65 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=31.5
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
..|+-|+.+++. .....-+.|..|+++.|..|-....
T Consensus 341 ~~CAgC~~~i~~------~~~~~~R~C~y~G~y~C~~Ch~~~~ 377 (580)
T KOG1829|consen 341 FRCAGCGHTIGP------DLEQRPRLCRYLGKYFCDCCHQNDK 377 (580)
T ss_pred ceecccCCCccc------ccccchhHhhhhhhhhCchhcccCc
Confidence 799999999994 4566689999999999999977654
No 425
>KOG2422|consensus
Probab=23.06 E-value=29 Score=40.85 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=3.3
Q ss_pred ccccccc
Q psy7848 171 QKCGIES 177 (754)
Q Consensus 171 ~~C~~~~ 177 (754)
.+|-+.+
T Consensus 212 ~kr~vl~ 218 (665)
T KOG2422|consen 212 PKRTVLT 218 (665)
T ss_pred cceeEec
Confidence 4454444
No 426
>KOG3507|consensus
Probab=23.02 E-value=55 Score=26.93 Aligned_cols=27 Identities=22% Similarity=0.599 Sum_probs=23.1
Q ss_pred cccccccccCCCccccccccCCCCcccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGV 169 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~v 169 (754)
..|+-|++... +-..-...|.+|.++|
T Consensus 21 YiCgdC~~en~-------lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENT-------LKRGDVIRCRECGYRI 47 (62)
T ss_pred EEecccccccc-------ccCCCcEehhhcchHH
Confidence 78999999988 6666688999999876
No 427
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=22.90 E-value=28 Score=42.71 Aligned_cols=32 Identities=25% Similarity=0.719 Sum_probs=0.0
Q ss_pred Ccccccccc----ccccccccccccCCCCCCceeeccchhhh
Q psy7848 159 CLVCHDCRG----GVCQKCGIESVSASKKENIWLCKICAETR 196 (754)
Q Consensus 159 ~~~C~~C~~----~vC~~C~~~~~~~~~~~~~WlC~vC~~~r 196 (754)
-+.|..|.. ..|..||..+ ...|.|..|...-
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T------~~~~~Cp~C~~~~ 690 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHT------EPVYVCPDCGIEV 690 (900)
T ss_dssp ------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcc------ccceecccccccc
Confidence 578999986 5799999888 5799999998754
No 428
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=22.85 E-value=38 Score=38.18 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=19.5
Q ss_pred ccccccccccccCCCCCCceeeccchhh
Q psy7848 168 GVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 168 ~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
++|+.||...+ .-.|.|.-|.+-
T Consensus 1 ~~c~~cg~~~~-----~~~g~cp~c~~w 23 (372)
T cd01121 1 YVCSECGYVSP-----KWLGKCPECGEW 23 (372)
T ss_pred CCCCCCCCCCC-----CccEECcCCCCc
Confidence 58999999985 778999999753
No 429
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=22.69 E-value=35 Score=30.60 Aligned_cols=21 Identities=38% Similarity=0.868 Sum_probs=16.2
Q ss_pred CCceeeccchhhhhhhhhccccccc
Q psy7848 184 ENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 184 ~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
.++|.|+-|.+. ..-|+|-+.
T Consensus 52 ~GIW~C~~C~~~----~AGGAy~~~ 72 (90)
T PTZ00255 52 VGIWRCKGCKKT----VAGGAWTLS 72 (90)
T ss_pred eEEEEcCCCCCE----EeCCccccc
Confidence 468999999874 567888877
No 430
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=22.64 E-value=20 Score=26.08 Aligned_cols=43 Identities=23% Similarity=0.567 Sum_probs=28.4
Q ss_pred ccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchh
Q psy7848 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 137 ~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
.|.+|.+.+.. ...-..|+|.+|..|-.... ......|.+|..
T Consensus 1 ~C~iC~~~~~~-----------~~~~~~C~H~~c~~C~~~~~----~~~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFRE-----------PVVLLPCGHVFCRSCIDKWL----KSGKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhC-----------ceEecCCCChhcHHHHHHHH----HhCcCCCCCCCC
Confidence 48888887741 33334499999999976654 123566888864
No 431
>PLN00162 transport protein sec23; Provisional
Probab=22.39 E-value=41 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.769 Sum_probs=26.6
Q ss_pred CccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 159 CLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 159 ~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
-..|..|+-+++.-|.+... ...|.|.+|...-++
T Consensus 53 pvRC~~CraylNPf~~~d~~-----~~~W~C~~C~~~N~~ 87 (761)
T PLN00162 53 PLRCRTCRAVLNPYCRVDFQ-----AKIWICPFCFQRNHF 87 (761)
T ss_pred CCccCCCcCEECCceEEecC-----CCEEEccCCCCCCCC
Confidence 46788888888888877653 568999999865543
No 432
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.30 E-value=44 Score=26.87 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=28.5
Q ss_pred cccc--cccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 136 HACA--LCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 136 ~~C~--~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
+-|. .|+..... .. ..+...+.|..|++..|-.|+..-
T Consensus 19 ~~CP~~~C~~~~~~--~~--~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 19 KWCPAPDCSAAIIV--TE--EEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred cCCCCCCCcceEEe--cC--CCCCCeeECCCCCCeECCCCCCcC
Confidence 6788 99877661 00 125668999999999999999765
No 433
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=22.24 E-value=38 Score=39.15 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.9
Q ss_pred cccccccccccccCCCCCCceeeccchh
Q psy7848 167 GGVCQKCGIESVSASKKENIWLCKICAE 194 (754)
Q Consensus 167 ~~vC~~C~~~~~~~~~~~~~WlC~vC~~ 194 (754)
.++|+.||...+ .-.|.|.-|..
T Consensus 7 ~y~C~~Cg~~~~-----~~~g~Cp~C~~ 29 (454)
T TIGR00416 7 KFVCQHCGADSP-----KWQGKCPACHA 29 (454)
T ss_pred eEECCcCCCCCc-----cccEECcCCCC
Confidence 489999999885 77999999964
No 434
>PF13945 NST1: Salt tolerance down-regulator
Probab=22.21 E-value=20 Score=36.54 Aligned_cols=9 Identities=44% Similarity=1.302 Sum_probs=6.1
Q ss_pred ccccccccc
Q psy7848 136 HACALCGDK 144 (754)
Q Consensus 136 ~~C~~C~~~ 144 (754)
..|..||+.
T Consensus 142 C~C~vCgr~ 150 (190)
T PF13945_consen 142 CSCSVCGRK 150 (190)
T ss_pred cccHHHhch
Confidence 667777765
No 435
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.19 E-value=39 Score=41.32 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=6.7
Q ss_pred CCHHHHHHHHHHHHh
Q psy7848 88 LDPTEQEKIEEVIKR 102 (754)
Q Consensus 88 Lt~~E~e~I~~Vl~R 102 (754)
|+..=.+.|.+.|+|
T Consensus 405 lS~~Ll~~i~~~l~~ 419 (730)
T COG1198 405 LSPALLEAIRKTLER 419 (730)
T ss_pred CCHHHHHHHHHHHhc
Confidence 444444444444433
No 436
>KOG2775|consensus
Probab=21.75 E-value=39 Score=36.65 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=18.7
Q ss_pred HHHHHHHHhhHHHhHHHHHHHHH----------HHHHHHHhhhh
Q psy7848 94 EKIEEVIKRAEALDYIEQERVGR----------LVERVDNMKRN 127 (754)
Q Consensus 94 e~I~~Vl~R~~~l~~~E~~Ri~~----------L~~~l~~~k~~ 127 (754)
.-|++=++|+.+.-..-.++++. +.+.|++--|+
T Consensus 82 ~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~ 125 (397)
T KOG2775|consen 82 SDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRK 125 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHH
Confidence 34566666666655554555543 45667664443
No 437
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=21.71 E-value=6.4e+02 Score=23.47 Aligned_cols=92 Identities=8% Similarity=0.096 Sum_probs=50.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
..|.++-+.-..+|..+..+.+.||++|+-.. .....|...... .... ...+.| .+...-.-..-+.|.+|+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~----~~v~~~~~~~~~-~~~~~~~~~~~-~~~~~~~l~GDV~i~~~~~ 77 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG----KKVFSTSKSYED-PKSYEQDSVII-ELPKNLPLRGDVLIKFYHK 77 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETT----EEEEETCCTCCC-CCEEETTCEEE-EEEEEEEEESEEEEEEEEC
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCC----ccEEEeccceec-cccccceeEEE-EeCCCCeEeCCEEEEEEeC
Confidence 34666666667888777778899999999642 122222221111 1111 122333 1222222246788999998
Q ss_pred CC--CCCccceeeeecCcccC
Q psy7848 564 DK--YGHDFLGEARFPLNRLR 582 (754)
Q Consensus 564 d~--~g~dfLGev~I~L~~L~ 582 (754)
.. ..++.+..+.+.-.-+.
T Consensus 78 ~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 78 RSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp ETTECCCEEEEEEEEEGGGSB
T ss_pred CCcccccCeEEEEEEeeeeee
Confidence 73 33477888777666554
No 438
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.65 E-value=5e+02 Score=25.63 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-----Cce-EEEeeeecC-----CCCCeeceeEEEeeeeccccCcceEE
Q psy7848 489 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-----TSH-RLRTKTCLR-----TINPEFHEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 489 VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-----~~~-~~rTkvi~~-----TlNP~WnE~f~F~~I~~~el~~~~L~ 557 (754)
=.|..|.+.. ..+-||+..+.-+.. ... ...|.+... ...-.||.-|.+.........-..|.
T Consensus 6 G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~ 79 (168)
T PF07162_consen 6 GEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLV 79 (168)
T ss_pred EEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEE
Confidence 3455666443 235577777632111 112 345555432 23467998888764444444447899
Q ss_pred EEEeeCCCCCC-ccceeeeecC
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPL 578 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L 578 (754)
|+||..|..++ .+.|...+.|
T Consensus 80 l~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 80 LQVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEcccCCeEEeEEeEEEe
Confidence 99999999998 7777655544
No 439
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=21.62 E-value=32 Score=36.99 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy7848 83 KKPEPLDPTEQEKIEEV 99 (754)
Q Consensus 83 ~~~~~Lt~~E~e~I~~V 99 (754)
++...||++|.+.|..-
T Consensus 177 ~~~~~Ls~~~~~~L~~~ 193 (269)
T PRK14811 177 RPATSLKAPEARRLYRA 193 (269)
T ss_pred CCcccCCHHHHHHHHHH
Confidence 57789999998777443
No 440
>PHA00080 DksA-like zinc finger domain containing protein
Probab=21.58 E-value=1.1e+02 Score=26.22 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=17.9
Q ss_pred cccccccccCCCccccccccCCCCcccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRG 167 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~ 167 (754)
..|.-||++.. +.|| .+......|.+|+.
T Consensus 32 ~~C~~Cg~~Ip--~~Rl-~a~P~~~~Cv~Cq~ 60 (72)
T PHA00080 32 THCEECGDPIP--EARR-EAVPGCRTCVSCQE 60 (72)
T ss_pred CEecCCCCcCc--HHHH-HhCCCccCcHHHHH
Confidence 68999998887 3441 12333556777763
No 441
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0904|consensus
Probab=21.09 E-value=2e+02 Score=35.77 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=55.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEE--ecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCCC-eEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLY--LKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSKQ-TLVITVW 702 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~--L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~-~L~ItV~ 702 (754)
..+.|.++.+.++- .....|-+|.|. +..+...- ...|..+..+.+|.||+.+.|+|.-.||... .|-|.||
T Consensus 343 ~~frI~l~~is~~n---~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVN---LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccC---CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 45666666665542 222344555544 43332221 3566666668899999999999987888753 4666666
Q ss_pred Ecc----------------CCCCCceeEEEEEecCC
Q psy7848 703 DKD----------------YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 703 D~d----------------~~~~ddfLG~v~L~l~s 722 (754)
--. .-+.+.-||.|.+.+-.
T Consensus 420 ~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD 455 (1076)
T KOG0904|consen 420 AVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFD 455 (1076)
T ss_pred EeechhccccccchhhhhccccccCceEEEeeeeee
Confidence 431 22334467777777653
No 443
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=20.94 E-value=52 Score=24.69 Aligned_cols=26 Identities=27% Similarity=0.731 Sum_probs=19.6
Q ss_pred cccccccCCCccccccccCCCCcccccccccccccc
Q psy7848 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC 173 (754)
Q Consensus 138 C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C 173 (754)
|..|.+..+ ++ +..|..|++..|.+=
T Consensus 1 C~~C~~~~~-------l~---~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVG-------LT---GFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCccc-------cc---CeECCccCCcccccc
Confidence 667777766 33 678999999999763
No 444
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=20.70 E-value=27 Score=37.69 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=14.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh
Q psy7848 83 KKPEPLDPTEQEKIEEVIKR 102 (754)
Q Consensus 83 ~~~~~Lt~~E~e~I~~Vl~R 102 (754)
+....||++|.+.|.+.+++
T Consensus 198 ~~~~~Ls~~~~~~L~~~i~~ 217 (282)
T PRK13945 198 TPAGQLKKKQLERLREAIIE 217 (282)
T ss_pred CccccCCHHHHHHHHHHHHH
Confidence 56789999997766555443
No 445
>KOG0695|consensus
Probab=20.57 E-value=36 Score=37.61 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=30.4
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
.+|.+|..-.- =++-.|-.|.+|+..|=++|-.-.+
T Consensus 142 ~~c~ic~d~iw-------glgrqgyrcinckl~vhkkch~~v~ 177 (593)
T KOG0695|consen 142 AYCGICSDRIW-------GLGRQGYRCINCKLLVHKKCHGLVP 177 (593)
T ss_pred eeeeechhhhh-------hcccccceeecceeehhhhhccccc
Confidence 78999998765 4777799999999999999987664
No 446
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=20.55 E-value=39 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=16.2
Q ss_pred Ccccccccccccccccccc
Q psy7848 159 CLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 159 ~~~C~~C~~~vC~~C~~~~ 177 (754)
...|.+|+..+|..|....
T Consensus 12 ~~fC~~~~~~iC~~C~~~~ 30 (39)
T cd00021 12 SLFCETDRALLCVDCDLSV 30 (39)
T ss_pred EEEeCccChhhhhhcChhh
Confidence 5689999999999998654
No 447
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=20.30 E-value=61 Score=24.35 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=25.6
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccc
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES 177 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~ 177 (754)
...|..|++.+. .+. .+..|.+|+..+=.+|....
T Consensus 11 ~~~C~~C~~~i~-------~~~-~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 11 PTKCCVCRKSIW-------GSF-QGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCccccccccC-------cCC-CCcCCCCCCchHHHHHHhhc
Confidence 367999999988 333 58889999866655566554
No 448
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=20.29 E-value=47 Score=37.22 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=7.8
Q ss_pred cccccccccCC
Q psy7848 136 HACALCGDKFS 146 (754)
Q Consensus 136 ~~C~~C~~~~g 146 (754)
..|..||.+.-
T Consensus 7 ~~C~~CGr~~~ 17 (355)
T COG1499 7 ILCVRCGRSVD 17 (355)
T ss_pred cEeccCCCcCc
Confidence 66777877763
No 449
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.19 E-value=47 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=18.6
Q ss_pred ccccccccccccCCCccccccccCCCCccccccc
Q psy7848 133 AAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCR 166 (754)
Q Consensus 133 ~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~ 166 (754)
.-+.+|..|+.++. -.-+...+|..|.
T Consensus 15 ML~~~Cp~C~~PL~-------~~k~g~~~Cv~C~ 41 (41)
T PF06677_consen 15 MLDEHCPDCGTPLM-------RDKDGKIYCVSCG 41 (41)
T ss_pred HhcCccCCCCCeeE-------EecCCCEECCCCC
Confidence 34588999998888 3344466777663
No 450
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=20.02 E-value=26 Score=25.83 Aligned_cols=32 Identities=34% Similarity=0.722 Sum_probs=12.6
Q ss_pred ccccccccccccccccccccCCCCCCceeeccch
Q psy7848 160 LVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 160 ~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
..|..|...|=+.|-.... ......|+|..|.
T Consensus 5 l~C~~C~v~VH~~CYGv~~--~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 5 LFCDNCNVAVHQSCYGVSE--VPDGDDWLCDRCE 36 (36)
T ss_dssp EE-SSS--EEEHHHHT-SS----SS-----HHH-
T ss_pred EEeCCCCCcCChhhCCccc--CCCCCcEECCcCC
Confidence 4577777777666655443 2223369999984
Done!