RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7848
(754 letters)
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 260 bits (665), Expect = 3e-81
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 15/283 (5%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + T
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFET 58
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHI 585
K +T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N +
Sbjct: 59 KVHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 586 SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 645
+ +L + +EE + G I +L + L V +++ NL MD
Sbjct: 118 VTEEWRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV 167
Query: 646 NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704
G SDP++K++L + + +K KT +K TLNP +NE F+ E ++ K +V+TV D
Sbjct: 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227
Query: 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
D ND +G + + NS G LRHW DM+ P H L
Sbjct: 228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
Score = 99.1 bits (247), Expect = 4e-23
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 449 TLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDP 508
+ LG I ++ Y T L V + AK L+ MD+ G SDP
Sbjct: 114 DFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDP 173
Query: 509 FCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 567
+ K++L+ K + +T T+NP ++E +F V + + + VLD DK G
Sbjct: 174 YVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGK 232
Query: 568 HDFLGEARFPLN 579
+D +G+ N
Sbjct: 233 NDAIGKVFVGYN 244
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 250 bits (639), Expect = 2e-77
Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 15/285 (5%)
Query: 466 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 525
+A G I + Y + L V + +A L A D +G SDP+ K+ L+P K + +
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQ 58
Query: 526 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 584
TK +T+NP F+E F SV +L+ + LH V D D++ HD +G+
Sbjct: 59 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----L 113
Query: 585 ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD 644
+ + + G E G++ +LC+ L V +IK +NL MD
Sbjct: 114 ELAEQPPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168
Query: 645 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703
GFSDP++K L + + +K KT +K TLNP +NE + + L I V D
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228
Query: 704 KDYGKSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 747
D N+ +G + + HW +M+ P E H L
Sbjct: 229 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
Score = 128 bits (322), Expect = 6e-33
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 734
LNPIFNE F + EL+++ L +V+D D +D +G + L + +
Sbjct: 66 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 735 KY-----PDHKHEGIHNLSIK 750
+ + G N S+
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146
Score = 101 bits (252), Expect = 1e-23
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 455 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 514
++ +LG + ++ Y T L VT+ +A L+AMD+ G SDP+ K +L
Sbjct: 122 RPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181
Query: 515 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGE 573
+ + + +T T+NP ++E L F V+ + L I V+D D GH + +G
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGV 240
Query: 574 ARFPLNRLRPH 584
R PH
Sbjct: 241 CRVGPEAADPH 251
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 165 bits (419), Expect = 1e-47
Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 601 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 660
EE+V + + GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD
Sbjct: 10 EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69
Query: 661 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 719
+ K K+KT +K KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L
Sbjct: 70 MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129
Query: 720 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
++KG+RL+HW + +K D K E H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157
Score = 107 bits (270), Expect = 3e-27
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+
Sbjct: 23 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
+T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 162 bits (411), Expect = 6e-47
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L + K KT K +
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW DM
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 734 MKYPDHKHEGIHNL 747
+ P H L
Sbjct: 123 IARPRQPVAQWHQL 136
Score = 108 bits (273), Expect = 4e-28
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
+ G + L++ Y+ + S+ V + +A+ L+AMDI GTSDP+ K+ L+ K + +T T
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 579
R +NP F+E F + L ++ I V+D DK D +G+
Sbjct: 61 KRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 162 bits (412), Expect = 8e-47
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 671
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 731
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW
Sbjct: 75 KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134
Query: 732 DMMKYPDHKHEGIHNLS 748
++ +P + H L
Sbjct: 135 EICDFPRRQIAKWHMLC 151
Score = 106 bits (266), Expect = 6e-27
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 579
T N F+E F + L S+ LVLD ++ + +G
Sbjct: 76 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 158 bits (402), Expect = 2e-45
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G I +L + L V +++ NL MD G SDP++K++L + + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 734 MKYPDHKHEGIHNL 747
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
Score = 104 bits (261), Expect = 3e-26
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
T+NP ++E +F V + + + VLD DK G +D +G+ N
Sbjct: 71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 145 bits (368), Expect = 6e-41
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 599 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 658
+ + + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 5 IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64
Query: 659 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 716
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 65 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
Query: 717 ELCCNSKGDRLRHWVDM 733
+ G W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140
Score = 118 bits (297), Expect = 3e-31
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 463 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 522
+ LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P
Sbjct: 12 ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKK 69
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+ TK +T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 70 KFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 144 bits (366), Expect = 2e-40
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 599 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 658
+ E +E + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 13 LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72
Query: 659 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 716
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 73 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
Query: 717 ELCCNSKGDRLRHWVDMM 734
+ G W D+
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149
Score = 118 bits (298), Expect = 3e-31
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 447 SGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS 506
+ G I + + + LG ++ ++ YD L V + +A L A+D+ GTS
Sbjct: 4 GISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS 63
Query: 507 DPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566
DP+ K+ L+P + TK +T+NP F+E+ TF V ++L ++L + V D D++
Sbjct: 64 DPYVKVFLLP--DKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRF 120
Query: 567 G-HDFLGEARFPLNRL 581
HD +GE + P+N +
Sbjct: 121 SKHDIIGEFKVPMNTV 136
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 140 bits (356), Expect = 3e-39
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 9 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
RTKT T NP ++E L ++ ++E D+ ++L I V D+DK+G ++F+GE RF L +L+
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128
Query: 584 HISRDLCLNLCK 595
+ ++ + L +
Sbjct: 129 NQRKNFNICLER 140
Score = 127 bits (322), Expect = 1e-34
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 602 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 661
E + ++ G + +L + L +I+ L PMDSNG +DP++KL+L P
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 662 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 719
K K +T T NP++NE ++ ++TL I+V D+D N+++G
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
Query: 720 CNSKGDRLRHWVDM 733
R ++
Sbjct: 123 LKKLKANQRKNFNI 136
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 136 bits (345), Expect = 9e-38
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 730
T+NP+++E E + L+++TL +VW N +LG E+ +S +L H
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129
Query: 731 VDMMKYPDHKHEGIH 745
+ + + EG H
Sbjct: 130 LPLHGKISAESEGHH 144
Score = 117 bits (296), Expect = 4e-31
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G I ++ Y+ T SL V + L D S+P+ K L+P + +T
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 588
T+NP + E L + + E+ L+ ++L V ++G + FLGEA ++ + D
Sbjct: 69 RDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLD 127
Query: 589 LCLNLCKHYPVPREEEVWGEEECWQH 614
CL L E G H
Sbjct: 128 HCLPLHGKISAESE----GHHH-HHH 148
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 136 bits (344), Expect = 1e-37
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I++ + LIV + NL+PMD NG SDP++KL L PD K KT
Sbjct: 20 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 732
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 78 SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136
Query: 733 MMKYPDHKHEGI 744
++ + ++ +
Sbjct: 137 LLSQEEGEYFNV 148
Score = 111 bits (279), Expect = 8e-29
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G I + D L V + AK L MD +G SDP+ KL L+P K+ + +TKT
Sbjct: 18 RRGRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 76 KCSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 133 bits (337), Expect = 1e-36
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 673
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V K
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67
Query: 674 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 729
TL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 68 TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127
Query: 730 WVDMMKYPD 738
+++ P
Sbjct: 128 NREIISGPS 136
Score = 124 bits (313), Expect = 2e-33
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 523
S + LG++ ++ Y+ + V + A+GL AMD TSDP+ K+ ++P + H+
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHK 59
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
++T+ +T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 132 bits (334), Expect = 3e-36
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 729
TLNP+F++ F + E+ ++TL + V + K LG + L
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 730 WVDMMKYPDHK 740
W D+ +
Sbjct: 130 WYDLTEDSGPS 140
Score = 111 bits (279), Expect = 8e-29
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
+ + LG I+LT+ + S L V +H + L A G SDP+ ++ L+P + S R
Sbjct: 4 GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 581
+T +T+NP F + F SVS ++ ++L + V + + LG+ L
Sbjct: 63 KTHVSKKTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 130 bits (330), Expect = 9e-36
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I+L + +K L V + NLIPMD NG SDP++KL L PD K KT
Sbjct: 5 GRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS 62
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 732
TLNP +NE F + K + L + +WD D ND++G L + W
Sbjct: 63 TLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYK 121
Query: 733 MMKYPDHKHEGIHNLSI 749
++ + + +N+ I
Sbjct: 122 LL---NQEEGEYYNVPI 135
Score = 106 bits (266), Expect = 4e-27
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G I L + T LHVT+ AK L MD +G SDP+ KL L+P K + +TKT
Sbjct: 3 KRGRIYLK--AEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
T+NP+++E TF + +D + L + + D D+ +DF+G F ++ L
Sbjct: 61 RSTLNPQWNESFTF-KLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 130 bits (329), Expect = 1e-35
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 673
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 729
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
Query: 730 WVDMMKYPDHKHEG 743
W + + G
Sbjct: 128 WYKLQTHDSGPSSG 141
Score = 125 bits (316), Expect = 7e-34
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
+ ++ G + + + +D L VT+ AK L + + +P+ K+ +P ++ RT
Sbjct: 3 SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 581
KT +T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 130 bits (329), Expect = 1e-35
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 664
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 665 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 721
K +T K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 722 SKGDRLRHW 730
S D W
Sbjct: 125 SHLDNTPRW 133
Score = 115 bits (289), Expect = 3e-30
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 522
G I+L + YD L + + +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 582 RP 583
Sbjct: 125 SH 126
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 129 bits (327), Expect = 2e-35
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 675 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 731
LNP +NE F E ++ ++ L + V D D ND +G + L W
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131
Query: 732 DM 733
D+
Sbjct: 132 DL 133
Score = 126 bits (318), Expect = 3e-34
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 464 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR 523
+S + NLG I+ +V Y+ +L V + +A+ L A D GTSDPF K+ L+P H+
Sbjct: 5 SSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP--DKKHK 62
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 582
L TK + +NP ++E F + + L++ VLD D++ +D +GE PLN++
Sbjct: 63 LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
Query: 583 PHISRDLCLNLCKHYP 598
+ +L P
Sbjct: 123 LTQMQTFWKDLKPSGP 138
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 129 bits (325), Expect = 4e-35
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 733 M 733
+
Sbjct: 130 L 130
Score = 111 bits (280), Expect = 5e-29
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S + + + YD L VT A + G D + + ++ T +
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEA- 61
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+T R ++ + E L ++E +L +L + + D++ H GE R L+
Sbjct: 62 QTALKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 127 bits (322), Expect = 2e-34
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 607 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 664
E E +I + L + K + + +I+ +NL + I++ + P
Sbjct: 22 DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81
Query: 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 721
++T + +FNE F + L ++TL + V D + LG ++
Sbjct: 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141
Query: 722 SKGDRLRHWVDMM 734
G+R W +++
Sbjct: 142 RSGERSTRWYNLL 154
Score = 123 bits (311), Expect = 6e-33
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 450 LKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPF 509
++R +E + I++ + YD + + + L A+
Sbjct: 8 VQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVN 67
Query: 510 CKLNLVPL-TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 567
++ ++P T+ RT+ + F+E S+S L ++L + V D+
Sbjct: 68 IRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHL 126
Query: 568 HDFLGEARFPLNRL 581
+ LG A+ L +
Sbjct: 127 EECLGGAQISLAEV 140
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 125 bits (317), Expect = 4e-34
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 581
T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117
Score = 124 bits (314), Expect = 1e-33
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 673
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 729
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 730 WVDM 733
W +
Sbjct: 125 WYKL 128
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 123 bits (310), Expect = 5e-33
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 667
G + + + L V +I+ +L P S+P++K+ L PD K +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71
Query: 668 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 725
TGVK KT P+F E + E E ++TL++TV D D + +G + LC
Sbjct: 72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131
Query: 726 RLRHWVDM 733
W +
Sbjct: 132 GGHWWKAL 139
Score = 110 bits (276), Expect = 2e-28
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 464 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-------DIHGTSDPFCKLNLVP 516
+S + LG + + YD L V + A+ L S+P+ K+ L+P
Sbjct: 5 SSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEAR 575
+ +T +T P F E+ TF + + ++L + V+D DK+ H +G+
Sbjct: 65 --DQKNSKQTGVKRKTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Query: 576 FPLNRL 581
PL +
Sbjct: 122 VPLCEV 127
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 120 bits (302), Expect = 9e-32
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 671
G L L + R L++++I+ LI G DP++K+ L P+ + KT
Sbjct: 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 730
+P F+E F + + K L++TVW++ + + +GC+ ++
Sbjct: 71 PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSF-------GVKSL 122
Query: 731 VDMMKYPDHKHEGIHNL 747
+ PD + G + L
Sbjct: 123 LT----PDKEISGWYYL 135
Score = 106 bits (267), Expect = 4e-27
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
+ G+ +L ++ D+ L + + KGL + GT DP+ K++L+P +T
Sbjct: 9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKT 67
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 581
+T +P FHE F V E D + L + V + +G F + L
Sbjct: 68 QTVPDCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 116 bits (291), Expect = 4e-30
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP-LTKTSHRLRTKTCLRTINPEFH 538
++ T + V + GL DI G SDP+ ++ L ++ ++TKT +++NP+++
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHY 597
E++ F + + + V D+++ DFLG+ PL L R K +
Sbjct: 63 EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 598 PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 640
+ G + L + + K + N + L
Sbjct: 119 VLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156
Score = 102 bits (255), Expect = 3e-25
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 687
+ V +I L D G SDP++++ L + +T K+LNP +NEE
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 688 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 741
++ V+D++ +D+LG +++ N + +R + D + +P
Sbjct: 70 LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 742 E 742
Sbjct: 127 S 127
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 113 bits (285), Expect = 1e-29
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G + L++ + + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 9 GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 730
T NP FNE L ++ L ++V + + N +LG + L W
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 731 VDM 733
+
Sbjct: 126 YQL 128
Score = 112 bits (283), Expect = 2e-29
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G+++L+V+Y + T L + + K L D +P+ K L+P T + + +TK
Sbjct: 7 GSGAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+T NP F+E L + S+ L + L + VL + + FLG PL
Sbjct: 64 RKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 111 bits (280), Expect = 7e-29
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 471 LGSIELTVTYDS-TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKT 528
+ D + + V + GL DI G SDP+ ++ L ++TKT
Sbjct: 5 CAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT 64
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR 587
+++NP+++E++ F + L V D+++ DFLG+ PL L R
Sbjct: 65 IKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 588 DLCLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 623
K + + PR + G + L + +
Sbjct: 121 LERPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151
Score = 109 bits (274), Expect = 4e-28
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 615 GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 671
L + R + V +I L D G SDP++++ L ++ +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
K+LNP +NEE + L+ V+D++ +D+LG +++
Sbjct: 66 KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 106 bits (265), Expect = 1e-26
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G I + + KK L V +I+ +L S P++K+YL + K KT +
Sbjct: 19 GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 729
KTL+P++ + + + L + VW D ++G + L +
Sbjct: 77 KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133
Query: 730 W 730
W
Sbjct: 134 W 134
Score = 94.5 bits (235), Expect = 1e-22
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHR 523
+ A +G I++ + L V + RA+ L T P+ K+ L+ +
Sbjct: 12 TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAK 69
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRL 581
+T+ +T++P + + L F + + L ++V D + F+G A+ L L
Sbjct: 70 KKTRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
Query: 582 RP 583
Sbjct: 126 DL 127
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 99.7 bits (249), Expect = 6e-25
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
L +TV+D+D K D+LG + + S D + + +
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118
Score = 96.2 bits (240), Expect = 1e-23
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +A L A D G SDPFC L L RL+T T + +NPE+++ TF +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTF-PI 68
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 601
+ L + V D+D DFLG+ PL +R L +
Sbjct: 69 KDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 98.9 bits (245), Expect = 1e-24
Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKF 145
E L E+E I VI RAE ++ +EQER+GRLV+R++ M++NV + C LCG++
Sbjct: 8 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVA--GDGVNRCILCGEQL 65
Query: 146 SPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAW 205
G+ G+ +VC DC+ VC KCG+E S ++ +WLCKIC E RE+WK+S AW
Sbjct: 66 -------GMLGSASVVCEDCKKNVCTKCGVE-TSNNRPHPVWLCKICLEQREVWKRSGAW 117
Query: 206 FFK 208
FFK
Sbjct: 118 FFK 120
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 96.3 bits (240), Expect = 9e-24
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 483 TTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE 539
++ V + RA + D+ T DP+ +L + R RT+ INP ++E
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58
Query: 540 KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 593
F L I ++D + + LG A F ++ ++ +++
Sbjct: 59 TFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
Score = 95.1 bits (237), Expect = 2e-23
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 630 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
+ + L IT+ D +Y ++ LG + G++
Sbjct: 63 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 95.2 bits (237), Expect = 3e-23
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + +N+ P G DP + + K + K KT LNP++NE + +
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63
Query: 690 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 742
L +L I V D + N +G + L + ++ + K +
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
Score = 92.1 bits (229), Expect = 4e-22
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541
++ L V + A + G DP + K +TK +NP ++E L
Sbjct: 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKK-----KTKKVDNELNPVWNEIL 57
Query: 542 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCK 595
F SL I+V D + G + +G A L L SR L L
Sbjct: 58 EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS 112
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 92.0 bits (229), Expect = 3e-22
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 625 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 684
++ + + ++ NL D DPF K+ + + + T TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59
Query: 685 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741
+ ++ I+VW+ +LGC+ L N+ +
Sbjct: 60 LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 742 E 742
Sbjct: 116 S 116
Score = 89.7 bits (223), Expect = 2e-21
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541
S + +T+ AK L D DPF K+ + + T T T++P++++
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH---STDTVKNTLDPKWNQHY 58
Query: 542 TFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-ISRDLCLNLCKH 596
Y S+ I V + K FLG R N + + L+LCK
Sbjct: 59 DLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL 113
Query: 597 YPVPREEEVWGEEECWQHGKIFLTL 621
P + G+I ++L
Sbjct: 114 NP---------SDTDAVRGQIVVSL 129
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 88.9 bits (221), Expect = 4e-21
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYS 545
L V L AKGL D DP+ +L + ++ PE++E F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-----KSNVAEGMGTTPEWNETFIF-T 65
Query: 546 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEE 604
VSE L + D D D +GEA PL + S Y V ++EE
Sbjct: 66 VSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-----YNVVKDEE 117
Query: 605 VWGEEECWQHGKIFLTLCF 623
G+I++ L F
Sbjct: 118 Y--------KGEIWVALSF 128
Score = 87.0 bits (216), Expect = 2e-20
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V L+ L D DP+++L + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+E + + L ++DKD G +D +G +
Sbjct: 67 SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 86.8 bits (215), Expect = 4e-20
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
+ + ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 690 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 730
S + + V D+D S+D+LG + + + W
Sbjct: 74 --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123
Score = 84.1 bits (208), Expect = 3e-19
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 44/157 (28%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
+ +T+ A+GL+A D G+SDP+ + + + RTKT +NP + E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGK-----TKKRTKTIYGNLNPVWEENFHFECH 73
Query: 547 SETDLSLQSLHILVLDDDKYG------------HDFLGEARFPLNRLRPHISRDLCLNLC 594
+ +D + + VLD+D DFLG+ + L
Sbjct: 74 NSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL------------- 116
Query: 595 KHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 626
E +VW ++ G I L + K
Sbjct: 117 -----SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 84.3 bits (207), Expect = 3e-19
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 88 LDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNV----TGGAAAAHACALCGD 143
L E E + V++R L E+ER+ L ++ CA C
Sbjct: 17 LTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQ 76
Query: 144 KFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSN 203
+ + + C +C VC+ C A +E WLC C R + S
Sbjct: 77 PYRLLLNS-------RRQCLECSLFVCKSCS----HAHPEEQGWLCDPCHLARVVKIGSL 125
Query: 204 AWFFK 208
W+++
Sbjct: 126 EWYYQ 130
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 82.2 bits (203), Expect = 2e-18
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L + +I + P++++ + + KT T +P + + +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 737
L VW KS+ LG L ++ +
Sbjct: 93 ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Score = 79.9 bits (197), Expect = 2e-17
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 15/126 (11%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L +T+ AK P+ ++ + +K +T+ C T +P++ + LT V
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTV-IV 91
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL---RPHISRDLCLNLCKHYPVPRE 602
+ LH V LG A + ++ + L
Sbjct: 92 TPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEP 146
Query: 603 EEVWGE 608
E G+
Sbjct: 147 TETIGD 152
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 85.4 bits (210), Expect = 3e-17
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 11/179 (6%)
Query: 482 STTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 538
+ V + RA + D+ T DP+ +L + T R RT+ INP ++
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWN 72
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP 598
E F L I ++D + + LG A F ++ ++ +++ +
Sbjct: 73 ETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 129
Query: 599 VPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIK 654
+ E + + L F +++ I +K S +
Sbjct: 130 MVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVP 188
Score = 78.4 bits (192), Expect = 4e-15
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 630 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 746
+ + L IT+ D +Y ++ LG +S + V + + +
Sbjct: 78 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 77.7 bits (191), Expect = 6e-17
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 484 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 533
L V + A GL+ H DP+ +++ +T T +T
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83
Query: 534 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 592
P ++E+ +V++ L + V + G F+
Sbjct: 84 KPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ------------E 126
Query: 593 LCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624
L + E W + E GK+F+ + +
Sbjct: 127 LLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156
Score = 75.4 bits (185), Expect = 4e-16
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 630 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 679
L V + + L P + DP++ + + R +T K KT P +
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87
Query: 680 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
NEEF L + V+ + + ++ L
Sbjct: 88 NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 74.5 bits (183), Expect = 5e-16
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 37/151 (24%)
Query: 486 SLHVTLHRAKGLRAMDI-----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 534
L + + A L+ DP+ LN+ S +T T +T +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62
Query: 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNL 593
P +H++ V + + + V D G DF+ L + SR
Sbjct: 63 PAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---- 113
Query: 594 CKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624
E W + E GK+++ + S
Sbjct: 114 ----------EDWIDLE--PEGKVYVIIDLS 132
Score = 72.9 bits (179), Expect = 2e-15
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 630 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 678
L + + + +L P DP+I L + R +T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64
Query: 679 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 732
+++EF + + + + + V+ +D++ + W+D
Sbjct: 65 WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 66.1 bits (160), Expect = 2e-11
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 35/178 (19%)
Query: 550 DLSLQSLHILVLDDDK-------------YGHDFLGEARFPLNRLRPHISRDLCLNLCKH 596
D SL+ LH L+ + + P + S D C C+
Sbjct: 319 DYSLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQD 378
Query: 597 YPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLY 656
V + + +V+ + +L + Y
Sbjct: 379 SKVTNQ---DCCPRQRGLAHL-------------VVSNFRAEHLWGDYT-----TATDAY 417
Query: 657 LKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 714
LK ++++TGV W NP + ++ E + + L + VWD DYG +D LG
Sbjct: 418 LKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWDDDLLG 474
Score = 54.1 bits (129), Expect = 1e-07
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544
L V+ RA+ L +D + K+ RT NP + +K+ F
Sbjct: 394 AHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFE 447
Query: 545 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 578
+V + L + V D D D LG
Sbjct: 448 NVLLST--GGPLRVQVWDADYGWDDDLLGSCDRSP 480
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 51.5 bits (123), Expect = 4e-08
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +AK A + + + L + + + T +R P + + F
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV-----QNVKSTTIA-VRGSQPSWEQDFMF--- 54
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 586
L L + V + +G PL +R
Sbjct: 55 EINRLD-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 93
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + K + + ++ L ++ K T + P + ++F E I
Sbjct: 7 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLEL 718
L L + VW+K + +G + +
Sbjct: 57 NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 2e-07
Identities = 49/387 (12%), Positives = 100/387 (25%), Gaps = 128/387 (33%)
Query: 460 EYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK 519
+ FV N + + + S+ ++ + R ++ + F K N V +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN-VSRLQ 135
Query: 520 TSHRLRT--------------------KTCL-------RTINPEFHEK---LTFYSVSET 549
+LR KT + + + K L + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 550 DL---SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP----VPRE 602
+ LQ L + + D + ++ ++ + R L K Y V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLL- 251
Query: 603 EEVWGEEECWQ----HGKIFLT---------LCFSTKKRALIVN-------------LIK 636
V + W KI LT L +T + + L+K
Sbjct: 252 -NVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 637 CTNLIPMD-----SNGFSDPF----IKLYLKPDLHKRKYKTGVKWKT------------- 674
+ P D +P I ++ L WK
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESS 362
Query: 675 ---LNP-----IFNEEFAI---ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723
L P +F + ++ I L + +W +D + +
Sbjct: 363 LNVLEPAEYRKMF-DRLSVFPPSAHIPT---ILLSL-IWFDV--IKSDVMVVVNKLHK-Y 414
Query: 724 GDRLRHWVDMMKYPDHKHEGIHNLSIK 750
+ + I ++ ++
Sbjct: 415 SLVEKQPKESTIS-------IPSIYLE 434
Score = 44.5 bits (104), Expect = 1e-04
Identities = 65/526 (12%), Positives = 141/526 (26%), Gaps = 152/526 (28%)
Query: 207 FKVSGLPYECLDHYTTEAVSGLPYECLDH-YTTEAGLPKYTIPKKTQPEKLAFNRRPIEN 265
F +S + E ++ + E D Y KY + + KL R+ +
Sbjct: 93 FLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLE 146
Query: 266 LKPPTWSLKI---ASANKSSEDNSSSDEEDARLARSKQVVSDARATC-PNREV--VTTAR 319
L+P + I + K+ +A V + C + ++ +
Sbjct: 147 LRPAKN-VLIDGVLGSGKTW------------VA--LDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 320 SSYP----------CSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTS----------IA 359
+ P + + +D + L+ I + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 360 NVSDTEQ--------PIVIPIRKIA-----SGGSVKLEPQSFPRPT-SPVDSEKFSSSAT 405
NV + + I++ R S + T +P + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 406 VRSSPLMSRHTLPLTVNENSISP--VSPLSPICNGNFNT----QQESSGTLKRGVI---- 455
LP V + +P +S ++ T + + L +I
Sbjct: 312 -----DCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSL 363
Query: 456 -----TEEKEYFVTS---QADTNLGSIELTV--TYDSTTCSLHVT--LHRAKGLRAMDIH 503
E ++ F ++ +I L++ + + V LH+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL------ 416
Query: 504 GTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN-PEFHEKL-TFYSVSETDLSLQSLHILVL 561
+ T + + + ++ N H + Y++ + + S ++
Sbjct: 417 ------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK---TFDSDDLIPP 467
Query: 562 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621
D+Y + +G H H E +FL
Sbjct: 468 YLDQYFYSHIG-----------H-----------HLKNIEHPERMTLFR-----MVFLDF 500
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK 667
F +K I+ + S + +L + YK
Sbjct: 501 RFLEQK-------IRHDSTAWNASGSILNTLQQL--------KFYK 531
Score = 44.5 bits (104), Expect = 2e-04
Identities = 35/268 (13%), Positives = 66/268 (24%), Gaps = 96/268 (35%)
Query: 39 SLTASVLRNRLVSFITSLSDVSLFGF-VHRLQTGWSVKAGQLRR-----------WKKPE 86
+ V + V F + W + + +
Sbjct: 165 WVALDVCLSYKV--------QCKMDFKIF-----W-LNLKNCNSPETVLEMLQKLLYQID 210
Query: 87 PLDPTEQEKIEEVIKRAEALDYIEQERVGRLVER---------VDNMK------------ 125
P + + + R ++ Q + RL++ + N++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 126 --------RNVTGGAAAAHACALCGDKFSPIFDR---LGLFGAKCLVC--HDCRGGVCQ- 171
+ VT +AA + D S L K L C D V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT 325
Query: 172 ---KCGIESVSASKKENIWLCKICAETREMWKKSNAW----FFKVSGLPYECLDHYTTEA 224
+ I ++ S ++ + T + WK N + S L+
Sbjct: 326 NPRRLSI--IAESIRDGL-------ATWDNWKHVNCDKLTTIIESS---LNVLE------ 367
Query: 225 VSGLPYECLDHYTTEAGLPKYT-IPKKT 251
P E + + P IP
Sbjct: 368 ----PAEYRKMFDRLSVFPPSAHIPTIL 391
Score = 37.5 bits (86), Expect = 0.018
Identities = 54/352 (15%), Positives = 97/352 (27%), Gaps = 122/352 (34%)
Query: 8 KKKKKKKKKKKIVIAIDKIYRFKAEK---EPIQESLTASVLRNRLVSFITSLSDVSLFGF 64
K+++ +K + + Y+F E Q S+ +I
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-------MTRMYIEQRD------- 117
Query: 65 VHRLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNM 124
R + + +++ +K +AL + R + V +D +
Sbjct: 118 ---------------RLYNDNQVFAKYNVSRLQPYLKLRQAL---LELRPAKNVL-IDGV 158
Query: 125 KRNVTGGAA----AAHACALCGDKFSPIFDRLGLF----GAKC-----------LVCHDC 165
G+ A C K D +F C + +
Sbjct: 159 -----LGSGKTWVALDVCL--SYKVQCKMDF-KIFWLNLK-NCNSPETVLEMLQKLLYQI 209
Query: 166 RGGVCQKC--------GIESVSASKKE---------------NIW----------LCKIC 192
+ I S+ A + N+ CKI
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 193 AETREMWKKSNAWFFKVSGLPYECLDH----YTTEAVSGLPYECLDHYTTEAGLPKYTIP 248
TR K F + + LDH T + V L + LD + LP+
Sbjct: 270 LTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--LPREV-- 322
Query: 249 KKTQPEKLAFNRRPI-ENLK--PPTW-------SLKIASANKSSEDNSSSDE 290
T P +L+ I E+++ TW K+ + +SS + E
Sbjct: 323 LTTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 1e-05
Identities = 111/619 (17%), Positives = 188/619 (30%), Gaps = 218/619 (35%)
Query: 28 RF----KAEKEPIQESLTASVLRNRLVSFITSLSDVSLFGF-VHRLQTGWSVKAGQLRRW 82
+F + EP + VL L F L G +H L A +L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----LEGNDIHAL-------AAKL--- 108
Query: 83 KKPEPLDPTEQEKIEEVIKRAEALDYIE-QERVGRLVERVDNMK--RNVTGGAAAAHACA 139
+ T K +E+IK +YI + R ++ N R V G A A
Sbjct: 109 ---LQENDTTLVKTKELIK-----NYITARIMAKRPFDKKSNSALFRAVGEG--NAQLVA 158
Query: 140 LCG-----DKFSPIFDRL-GLFGA-KCLVCHDCRGGVCQKCGIESVSASKKENIWLCKIC 192
+ G D + F+ L L+ LV D I+ + + E L +
Sbjct: 159 IFGGQGNTDDY---FEELRDLYQTYHVLV-GDL---------IKFSAETLSE---LIRTT 202
Query: 193 AETREMWKKS---NAWFFKVSGLPYECLDHYTTEAVSGLPYECL---DHYTTEAGLPKYT 246
+ +++ + W S P + D+ + +S P + HY A L +T
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDK--DYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFT 259
Query: 247 IPKKTQPEKLAFNRRPIENLKPPTWSLK--IASANKSSEDNSSSDEEDARLA-------- 296
P +L LK T + + + + D+ S R A
Sbjct: 260 ------PGELR------SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 297 -RSKQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPS-------LKSIDI 348
R + +S P S E+ E E PS L +
Sbjct: 308 VRCYE---------------AYPNTSLPPSILEDSLENN---EGVPSPMLSISNLTQEQV 349
Query: 349 FTAISEF---------TSIANVSDTEQPIVI---P---------IRKIASGGSVKLEPQS 387
+++ I+ V + + +V+ P +RK + + QS
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD---QS 405
Query: 388 FPR-PTS---PVDSEKFSSSATVRS---SPLM--SRHTLPLTVNENSIS-PVSPLS-PIC 436
R P S S +F V S S L+ + + + +N++S + P+
Sbjct: 406 --RIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV- 459
Query: 437 NGNFNT-----QQESSGTLKRGV---ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLH 488
++T + SG++ + I + E T + +T H
Sbjct: 460 ---YDTFDGSDLRVLSGSISERIVDCIIRLPVKW------------ETTTQFKAT----H 500
Query: 489 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548
+ +D P L LT HR + T +R I
Sbjct: 501 I----------LDF----GPGGASGLGVLT---HRNKDGTGVRVI-----------VAGT 532
Query: 549 TDLSLQSLHILVLDDDKYG 567
D++ DD YG
Sbjct: 533 LDIN---------PDDDYG 542
Score = 43.1 bits (101), Expect = 3e-04
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 64/209 (30%)
Query: 15 KKKKIVIAIDKIYRFKAEKEPIQESLTASVLRNRLVSFITSLSDVSLFGFVHRLQTGWSV 74
++++ ++K + ++ SL LV ++ SL+G
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLV--VSGPP-QSLYGLNL-------- 391
Query: 75 KAGQLRRWKKPEPLD----PTEQEKIEEVIKR-------------AEALDYIEQERVGRL 117
LR+ K P LD P + K+ + R A D I ++ V
Sbjct: 392 ---TLRKAKAPSGLDQSRIPFSERKL-KFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 118 VE-RVDNMK------------RNVTGGAAAAHACALCGD--------KFSP----IFDRL 152
V +++ R ++G + + +F F
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 153 GLFGAKCLVCHDCRGGVCQKCGIESVSAS 181
G G L + G G+ + A
Sbjct: 508 GASGLGVLTHRNKDG-----TGVRVIVAG 531
Score = 42.3 bits (99), Expect = 7e-04
Identities = 37/264 (14%), Positives = 70/264 (26%), Gaps = 78/264 (29%)
Query: 412 MSRHTL-PLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTS----- 465
M ++ PLT++ S+ V + F Q L +E F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT--ASFFIASQ-----L--------QEQFNKILPEPT 45
Query: 466 ----QADTNLGSIELTVTY--------DSTTCS-----LHVTLHRAKG--LRAMDIHGTS 506
D EL + + + L++ L + L DIH +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 507 DPFCKLNLVPLTKTSHRLRT----KTCLRTINPEFHE----------KLTFYSV------ 546
+ N L KT ++ + + + ++
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 547 SETDLS-LQSLHILVLDDDKYGH---DFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPR 601
++ L+ L+ Y D + + L+ L R + + K +
Sbjct: 166 TDDYFEELRDLY------QTYHVLVGDLIKFSAETLSELIRTTLDAE------KVFTQGL 213
Query: 602 EEEVWGEEECWQHGKIFLTLC-FS 624
W E K +L S
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPIS 237
Score = 39.6 bits (92), Expect = 0.005
Identities = 46/265 (17%), Positives = 75/265 (28%), Gaps = 104/265 (39%)
Query: 188 LCKICAETREMWKKSNAWFFKVSGL---------PYECLDHYT-------TEAVSGLPYE 231
L K +++W +++ F G P H+ E S + +E
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 232 -CLDHYTT------EAG--LPKYTI--PKK-------TQP-----EKLAFNRRPIEN--L 266
+D E YT K TQP EK AF +++ L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF--EDLKSKGL 1752
Query: 267 KPPTW-----SL-----KIASANKSSEDNSSSDEEDA-RL--ARSKQVVSDARATCPNRE 313
P SL + A+ E + R + A P E
Sbjct: 1753 IPADATFAGHSLGEYAALASLAD-------VMSIESLVEVVFYRGM-TMQVA---VPRDE 1801
Query: 314 VVTTARSSY------P------CSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTSIANV 361
+ RS+Y P S+E + VE +++ I N
Sbjct: 1802 L---GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT------------GWLVEIVNY 1846
Query: 362 -SDTEQPIVIPIRKIASGGSVK-LE 384
+ +Q V G ++ L+
Sbjct: 1847 NVENQQ-YVA-------AGDLRALD 1863
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 44.6 bits (105), Expect = 2e-05
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +AK A + + + L + + T+ +R P + + F +
Sbjct: 16 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRGS------QPSWEQDFMF-EI 65
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582
+ DL L + V + +G PL +R
Sbjct: 66 NRLDLGLT---VEVWNKGLIWDTMVGTVWIPLRTIR 98
Score = 41.1 bits (96), Expect = 4e-04
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + K + + ++ L ++ + T + + P + ++F E
Sbjct: 16 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 743
+L L + VW+K + +G W+ + EG
Sbjct: 68 LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 44.2 bits (104), Expect = 2e-05
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
+L V L LR G +D K+ + S L + + F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFR-----WP 71
Query: 546 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL--RPHISRDLCLNLCKHYPVP 600
V+ + + L I + + K + +G R L ++ + L + +
Sbjct: 72 VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 46.4 bits (109), Expect = 3e-05
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTS--DPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFH 538
L V + + L ++ + S DP + + + + + +T NP +
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583
+ F V+ DL+L + +V D D DF+G++ P N L+
Sbjct: 554 MEFEF-EVTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
Score = 43.0 bits (100), Expect = 4e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 626 KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 680
+ L V +I L ++ N S DP + + + D R+ + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 726
EF E + +L+ + V D D ND++G + +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 76
Score = 41.1 bits (96), Expect = 6e-05
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193
+ CA C + + + C C VC+ C + W CK+C+
Sbjct: 24 SDRTCARCQESLGRLSPK----TN---TCRGCNHLVCRDC-----RIQESNGTWRCKVCS 71
Query: 194 ETR 196
Sbjct: 72 GPS 74
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 38.1 bits (88), Expect = 8e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC---GIESVSASKKENIWLCKICAE 194
C +C ++L + C +C Q C + + +W C C
Sbjct: 19 CVVCRQMTVASGNQL-------VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
Query: 195 TREMWKKSN 203
+ + N
Sbjct: 72 QMKRMAQKN 80
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 41.1 bits (95), Expect = 0.001
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 8/119 (6%)
Query: 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET 687
L + +I+ L P + +L L L+ R + E F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 688 KITELSKQTLVITVWDKDYGKSND-YLGCLE--LCCNSKGDRLRHWVDMMKYPDHKHEG 743
+ + + DK K Y+G + + + W + G
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSG 124
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 39.2 bits (91), Expect = 0.005
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 624 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF 683
++ L+V++I+ T L NG S+P+ ++ + + T TLNP +N F
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYT----TRTIQDTLNPKWN--F 436
Query: 684 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+ I +L + L +T++D+D +D+LG E+
Sbjct: 437 NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
Score = 37.3 bits (86), Expect = 0.017
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 455 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 514
I E ++ ++ + + S L V + A L+A +G S+P+C++++
Sbjct: 357 IKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM 416
Query: 515 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 573
S T+T T+NP+++ F+ DL L + + D D++ DFLG
Sbjct: 417 -----GSQSYTTRTIQDTLNPKWNFNCQFFI---KDLYQDVLCLTLFDRDQFSPDDFLGR 468
Query: 574 ARFPLNRLR 582
P+ ++R
Sbjct: 469 TEIPVAKIR 477
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 34.9 bits (80), Expect = 0.006
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 130 GGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKK--ENIW 187
G + ++ C +C +++S + + ++C C G Q C + +S + W
Sbjct: 1 GSSGSSGVCTICQEEYSEAPNEM-------VICDKCGQGYHQLCHTPHIDSSVIDSDEKW 53
Query: 188 LCKIC 192
LC+ C
Sbjct: 54 LCRQC 58
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 38.4 bits (88), Expect = 0.010
Identities = 62/370 (16%), Positives = 110/370 (29%), Gaps = 54/370 (14%)
Query: 241 GLPKYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANK-------SSEDNSSSDEEDA 293
G T P + P K E+L+ KI NK +S + E +
Sbjct: 429 GDMLLTEPLEKFPLKPGVPLPSPEDLRG-----KILIKNKKNQFSGPTSSSKDTGGEAEG 483
Query: 294 RLARSKQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIFTAIS 353
S V E +EEE + +++ + + + +S
Sbjct: 484 SSPPSAPAVWAGEEGTELEEEEVEEEEEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEMS 543
Query: 354 EFT----SIANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSS 409
VS I+S +K VD ++ R
Sbjct: 544 SLVNYIQPTKFVSFEFSAQKNRSYVISSFTELKAYDLLSKASVQFVD---YNKRQMSRIY 600
Query: 410 PLMSRHT----LPL--------TVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITE 457
P +R +P V N + P+ F +S LK +
Sbjct: 601 PKGTRMDSSNYMPQMFWNAGCQMVALNFQTMDLPMQ-QNMAVFEFNGQSGYLLKHEFMRR 659
Query: 458 EKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL 517
+ F D + T L +T+ + L + + ++ L L
Sbjct: 660 PDKQFNPFSVDRIDVVVATT---------LSITVISGQFLS----ERSVRTYVEVELFGL 706
Query: 518 ---TKTSHRLRTKTCLRTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGE 573
K +R + +INP + E+ F + +L+ L + V+++ + FLG
Sbjct: 707 PGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELAS--LRVAVMEEG---NKFLGH 761
Query: 574 ARFPLNRLRP 583
P+N L
Sbjct: 762 RIIPINALNS 771
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
domain, metal binding protein; NMR {Rattus norvegicus}
PDB: 2cjs_C
Length = 62
Score = 34.0 bits (77), Expect = 0.012
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 161 VCHDCRGGVCQKCGIESVSASKKENIWLCKICAETRE 197
C C+ C +CG S K +W+C +C + +E
Sbjct: 27 NCSYCQTKFCARCGGRVSLRSNKV-MWVCNLCRKQQE 62
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 36.9 bits (84), Expect = 0.028
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 520 TSHRLRTKTCLR-TINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFP 577
T + RT+T + NP + E+ F V L+ L I ++ F+G P
Sbjct: 757 TRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLAS--LRIAAFEEG---GKFVGHRILP 811
Query: 578 LNRLRP 583
++ +R
Sbjct: 812 VSAIRS 817
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 653 IKLYLKPDLHKRKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705
+ ++ P +RKY+T + + NP+++EE K+ + +L I +++
Sbjct: 748 VDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG 801
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 33.2 bits (75), Expect = 0.098
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 649 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 706
+ PF + +K L + KT V K T+ P + F + + I + +
Sbjct: 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY----EGRVIQIVLMRAAEE 82
Query: 707 GKSNDYLGCLEL--CCNSKGDRLRHWVDMM 734
S +G L C + W+D+
Sbjct: 83 PVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
Score = 30.8 bits (69), Expect = 0.65
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L + + + + PFC + + T T+ PE+ TF +
Sbjct: 8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKS--TFDAH 65
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 581
+ + I+++ + + E ++ L
Sbjct: 66 IYEG---RVIQIVLMRA---AEEPVSEVTVGVSVL 94
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Length = 59
Score = 31.5 bits (71), Expect = 0.10
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 92 EQEKIEEVIKRAEALDYIEQERVGRLVERVDNMK--RNVTG 130
EQE I +V++R AL E+ERV L E++ + + +N++G
Sbjct: 7 EQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQLKNMSG 47
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein,
protei secretion, microbial pathogenesis; HET: C8E;
2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Length = 129
Score = 33.0 bits (75), Expect = 0.13
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 103 AEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACA 139
A+ + + +V L +V+ + + G A+A A +
Sbjct: 31 AKGVTNLAG-QVNNLEGKVNKVGKRADAGTASALAAS 66
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 31.4 bits (71), Expect = 0.13
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC-GIESVSASKKENIWLCKICAETR 196
C++C D S + + L C C V Q+C G+ + E WLC+ C ++R
Sbjct: 19 CSICMDGESQNSNVI-------LFCDMCNLAVHQECYGVPYI----PEGQWLCRHCLQSR 67
Query: 197 EM 198
Sbjct: 68 AR 69
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 34.5 bits (78), Expect = 0.14
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 507 DPFCKLNL--VPLTKTSHRLRTKTCLR-TINPEFHEKL-TFYSVSETDLSLQSLHILVLD 562
+ ++ + +P + +TK ++P + EK+ F V DL++ + I+V +
Sbjct: 668 SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAV--VRIIVSE 725
Query: 563 DDKYGHDFLGEARFPLNRLRP 583
++ F+G PL+ ++P
Sbjct: 726 EN---GKFIGHRVMPLDGIKP 743
Score = 29.9 bits (66), Expect = 3.8
Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKL---YLKPDLHKRKYKT 668
+ K F ST + + S+ ++++ L D ++K+KT
Sbjct: 630 RKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKT 689
Query: 669 G-VKWKTLNPIFNEE--FAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSK 723
++ ++P ++E+ + + +L+ + I V +++ ++G + L
Sbjct: 690 KIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIVSEEN----GKFIGHRVMPLDGIKP 743
Query: 724 GDR 726
G R
Sbjct: 744 GYR 746
>2gr8_A Adhesin; trimeric autotransporter, adhesion, protein secretion,
microbial pathogenesis, membrane protein; 2.00A
{Haemophilus influenzae} SCOP: d.24.1.4
Length = 99
Score = 31.7 bits (72), Expect = 0.16
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 105 ALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACA 139
+ + + E+ G V + G A+A A +
Sbjct: 2 SWSHPQFEKSGGGGGLVPRGSKRADAGTASALAAS 36
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 32.7 bits (74), Expect = 0.16
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 487 LHVTLHRAKGLRAMDIHG-TSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTF 543
L + L G +P+C + + ++ K T+ P +
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKK--PTMYPPWDSTFDA 69
Query: 544 YSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 581
+ + + I+V + D + E L L
Sbjct: 70 HINKG-----RVMQIIVKGKNV---DLISETTVELYSL 99
Score = 28.1 bits (62), Expect = 5.0
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 649 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 706
+P+ + +K + + + K T+ P ++ F + + I V K
Sbjct: 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN----KGRVMQIIVKGKNVD 87
Query: 707 GKSNDYLGCLELC--CNSKGDRLRHWVDMM 734
S + L C + W+++
Sbjct: 88 LISETTVELYSLAERCRKNNGKTEIWLELK 117
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 34.1 bits (78), Expect = 0.19
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 169 VCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGLPYEC 216
+C CG+ +V A N + CK C + +++ +PY
Sbjct: 1162 ICGICGLMTVIAKLNHNQFECKGC--------DNKIDIYQIH-IPYAA 1200
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 30.8 bits (69), Expect = 0.35
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC-GIESVSASKKENIWLCKICAETR 196
C++C D S + + L C C V Q+C G+ + E WLC+ C ++R
Sbjct: 28 CSICMDGESQNSNVI-------LFCDMCNLAVHQECYGVPYI----PEGQWLCRHCLQSR 76
Query: 197 EM 198
Sbjct: 77 AR 78
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 32.4 bits (74), Expect = 0.60
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 400 FSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSP 434
FSSSATV + +P+ E P+ P +P
Sbjct: 132 FSSSATVYGDATRFPNMIPIP--EE--CPLGPTNP 162
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 29.6 bits (67), Expect = 0.97
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 1 MKKKKKKKKKKKKKKK 16
M ++ KK+ +KKK
Sbjct: 1 MVTPREPKKRTTRKKK 16
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 1.0
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 13/29 (44%)
Query: 160 LVCHDCRGG-------------VCQKCGI 175
L C +C+ VC CG+
Sbjct: 22 LTCPECKVYPPKIVERFSEGDVVCALCGL 50
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 31.7 bits (72), Expect = 1.0
Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 24/181 (13%)
Query: 230 YECLDHYTTEAGLPKYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSD 289
Y D P ++ + L F R +LK + K
Sbjct: 601 YFWRD--------PVELERVDSREDALVFGR---------IITLK-DTWGKQGGGTQQKA 642
Query: 290 EEDARLARSKQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIF 349
E R + + + R + A + P + E++ E + + I
Sbjct: 643 EGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGLGASEGDARTIA 702
Query: 350 --TAISEFTSIANVSDTEQPI----VIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSS 403
A+ F A DT + V + G VK+ V S + S+
Sbjct: 703 RDPALLAFVGGAAPGDTFAQVASWTVNELVAGLRAGEVKVRAADLAPLAEGVASGQLSAR 762
Query: 404 A 404
Sbjct: 763 I 763
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 31.3 bits (72), Expect = 1.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 400 FSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSP 434
FSSSATV P P+ E P+S +P
Sbjct: 126 FSSSATVYGVP----ERSPID--ET--FPLSATNP 152
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.2
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 78 QLRRWKKP-----EPLDPTEQEKIEEVIKRAE-ALD--YIEQERVGRLVERVDNMKRN 127
+R+W++ + LD + +E ++A+ L+ Q E+V+ K N
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS------EQVEKNKIN 137
Score = 30.5 bits (68), Expect = 1.4
Identities = 6/60 (10%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 1 MKKKKKKKKKKKKKKKKKIVIAIDKIYRFKAEKEPIQESLTASVLRNRLV--SFITSLSD 58
+++ K +++ ++K +++ + ++E+ + + + NR+ +F
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ------VEKNKINNRIADKAFYQQPDA 151
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.2 bits (70), Expect = 1.3
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 2 KKKKKKKKKKKKKKKKKIVIA------IDKIYRFKAEKEPIQES 39
+KK KK+ KKK+ + K+ +A K F +E ES
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 297
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MC midwest center for structural
genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica
subsp}
Length = 123
Score = 29.5 bits (66), Expect = 1.4
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 78 QLRRWKKPEPLDPTEQEKIEEVIKRAEALD----YIEQERVGRLVERVDNMKRNVTGGAA 133
Q+ + E ++ + + Q R+ RL + V +
Sbjct: 49 STANITISSCSSLMLQDLLREKLRAILDNEIEIKRLLQLRLDRLSDLVGQSTKQQAVNNT 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics,
ring-finger, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
g.44.1.1
Length = 93
Score = 28.9 bits (64), Expect = 1.6
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 133 AAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC 173
C +CGD+ + G + C++C C+ C
Sbjct: 14 LDGQFCEICGDQIGLTVE-----GDLFVACNECGFPACRPC 49
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 29.2 bits (65), Expect = 1.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 2 KKKKKKKKKKKKKKKKKI--VIAIDKIYRFKAEKE-PIQESLTASVLRNRL 49
KK KKK KK K + + +D+ + KE P ++ SVL +RL
Sbjct: 19 GGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRL 69
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 29.2 bits (65), Expect = 1.7
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 2 KKKKKKKKKKKKKKKKKI--VIAIDKIYRFKAEKE-PIQESLTASVLRNRL 49
K+KKKK K K+K+K+ + DK K E P + +T SVL RL
Sbjct: 20 GGKQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERL 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 30.7 bits (69), Expect = 2.1
Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 23/159 (14%)
Query: 3 KKKKKKKKKKKKKKKKIVIAIDKIYRFKAEKEPIQESLTASVLRNRLVSFITSLSDV--S 60
+ ++ K K + +++ I +A++ + + ++ + + + + +
Sbjct: 898 FEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVD-----FIQQTNLDDLPDKASIIDA 952
Query: 61 LFGFVHRLQTGWSVKAGQLRRWKKPEPLDPTE-QEKIEEVIKRAEALDYIEQERVGRLVE 119
F F R + + K E L+ + I +KR A + + L E
Sbjct: 953 FFTFAQR------EQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTE-----LNE 1001
Query: 120 RVDNMKRNVTGGAAAAHACALCGDKFSPIFDRL-GLFGA 157
+ + A K ++ G+ G
Sbjct: 1002 TLPKLSPLNPQYKTKKQAVF---QKIVSFIEKFKGVGGK 1037
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 30.1 bits (67), Expect = 2.1
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 169 VCQKCGIESVSASK---KENIWLCKICAETRE 197
C CG E + +CK ++
Sbjct: 174 RCDVCG-EYTYEADAKLLNGKPVCKPDYYGKK 204
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S
disease, APP, AICD, Fe65, PTB domain, alternative
splicing, polymorphism, alzheimer disease, apoptosis;
2.00A {Homo sapiens} PDB: 3dxd_A 3dxc_A
Length = 140
Score = 29.4 bits (66), Expect = 2.1
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 3 KKKKKKKKKKKKKKKKIVIAIDKIYRFKAEKEPIQESLTASVLRN---RLVSFITSLSDV 59
+ +++ + +A + I T +VL R +SF+ DV
Sbjct: 34 ESVLSSSSREQWTPSHVSVAPATLT--------ILHQQTEAVLGECRVRFLSFLAVGRDV 85
Query: 60 SLFGFVHRLQTG 71
F F+
Sbjct: 86 HTFAFIMAAGPA 97
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.4 bits (65), Expect = 2.2
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 2 KKKKKKKKKKKKKKKKKIVIAIDKIYRFKAEKEPIQES--LTASVLRNRL 49
K KKK K K K K + I+K P + LT S + +L
Sbjct: 24 KGGKKKWTKGKAKDKVNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEKL 73
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Length = 126
Score = 29.1 bits (65), Expect = 2.4
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 78 QLRRWKKPEPLDPTEQEKIEEVIKRAEALD----YIEQERVGRLVERVDNMKR 126
+LR + EPLD + +++ R D + ++ RL + + MKR
Sbjct: 59 RLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDLALPQLARLSDLLGRMKR 111
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 30.3 bits (68), Expect = 2.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 2 KKKKKKKKKKKKKKKKKIVIAI 23
K K+ +K ++I I
Sbjct: 19 SNGKNPFKRSTGRKVSNVIIII 40
Score = 29.2 bits (65), Expect = 6.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 2 KKKKKKKKKKKKKKKKKIVIAI 23
K K+ +K I+I +
Sbjct: 20 NGKNPFKRSTGRKVSNVIIIIL 41
Score = 29.2 bits (65), Expect = 6.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 KKKKKKKKKKKKKKKKKIVIAI 23
+ K K+ +K VI I
Sbjct: 18 RSNGKNPFKRSTGRKVSNVIII 39
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum
biogenesis, chaper cytoplasm, repressor, transcription;
3.20A {Salmonella typhimurium}
Length = 122
Score = 28.8 bits (64), Expect = 2.7
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 78 QLRRWKKPEPLDPTEQEKIEEVIKRAEALD----YIEQERVGRLVERVDNMKRNVTGGAA 133
+ + P + + Q+ + IK+ + + Q+R+ L + R + A
Sbjct: 46 TVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSLNNA 105
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 29.7 bits (67), Expect = 3.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 1 MKKKKKKKKKKKKKKKKKIVIAI 23
M + + + K+KK K++
Sbjct: 1 MTETRTETKQKKPSTFTKVMKIA 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.0 bits (67), Expect = 3.2
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 13 KKKKKKIVIAIDKIYRFKAEKEPIQESLTASVLRNRL-VSFITSLSDVSLFGFVHRLQTG 71
+ K ++I +D+ + A N + FI S S++ L +
Sbjct: 133 QASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLL---YDYLRV 189
Query: 72 WSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVD 122
++ R L P +E+ E ++R I+ + + E++
Sbjct: 190 EDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIG 240
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 27.4 bits (61), Expect = 4.2
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 14/44 (31%)
Query: 133 AAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCR---GGVCQKC 173
A AC CG F+ R H CR +C C
Sbjct: 19 EDAPACNGCGCVFTTTVRR-----------HHCRNCGYVLCGDC 51
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 29.5 bits (66), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 2 KKKKKKKKKKKKKKKKKI-----VIAIDKIY 27
KKKKKKKKK+ K+ + I +Y
Sbjct: 94 GATGKKKKKKKKKRGPKVQTDPPSVPICDLY 124
Score = 28.7 bits (64), Expect = 8.8
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 2 KKKKKKKKKKKKKKKKK 18
KKKKKKKKK+
Sbjct: 91 DGDGATGKKKKKKKKKR 107
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 27.4 bits (61), Expect = 4.5
Identities = 17/73 (23%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 129 TGGAAAAHACALCGDKFSPIFDRL-----GLFGAKCLVCHDCRGGVCQKCGIESVSASKK 183
G A C CG I +C VC DC + QK
Sbjct: 9 IGNAQKLPMCDKCGT---GIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF------V 59
Query: 184 ENIWLCKICAETR 196
E+ C+ A R
Sbjct: 60 EDQIYCEKHARER 72
>2lhj_A High mobility group protein homolog NHP1; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; NMR {Babesia bovis}
Length = 97
Score = 27.7 bits (62), Expect = 4.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 1 MKKKKKKKKKKKKKKKKK 18
M + ++ +K KK
Sbjct: 1 MAGASDRTGVRRPRKAKK 18
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 28.7 bits (65), Expect = 4.8
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 80 RRWKKPEPLDPTEQEKIEEVIKRA-EALDYIEQERVGR--LVERVDNMKRNVT-GGAAAA 135
W+ P P E+ +V +RA EA+ I G L+ VT G
Sbjct: 106 HFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLI---------VTHGVVLKT 156
Query: 136 HACALCGDKFSPIFDRLGLFGA 157
A ++ ++G
Sbjct: 157 LMAAFKDTPLDHLWSPPYMYGT 178
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
3s2x_A
Length = 729
Score = 29.5 bits (66), Expect = 5.9
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 91 TEQEKIEEVIKRAEALDYIEQERVGRLV-ERVDNMKRNVTGGAAAAHACALCGDKFSPIF 149
T++ K++E ++ A +R+ L E VD ++C LC F+P
Sbjct: 469 TDEAKVKEYMEVAREKYKERDDRMRGLTDETVDTF-----------YSCVLC-QSFAPNH 516
Query: 150 ------DRLGLFGA 157
+R+GL GA
Sbjct: 517 VCIVTPERVGLCGA 530
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 27.3 bits (61), Expect = 5.9
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 1 MKKKKKKKKKKKKKKKKKIVIAIDKIYRFKAEK 33
M K K KK+ +++ + + +
Sbjct: 1 MSTKNAKPKKEAQRRPSR-----KAKVKATLGE 28
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_W
Length = 130
Score = 28.0 bits (62), Expect = 6.1
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 15/97 (15%)
Query: 1 MKKKKKKKKKKKKKKKKKIVI-----AIDKIYRFKAEKEPIQE----------SLTASVL 45
+ K KKK VI DKI + ++ +QE +L SV
Sbjct: 5 VAVAAKGGAGGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVT 64
Query: 46 RNRLVSFITSLSDVSLFGFVHRLQTGWSVKAGQLRRW 82
R + +T SD + + T +K +R W
Sbjct: 65 VTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDW 101
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 29.4 bits (66), Expect = 6.3
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 169 VCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGLPYEC 216
VC +CG K N ++C I + F V+ + Y
Sbjct: 1063 VCDQCGYIGWYDKNK-NKYVCPIH--------GDKSNLFPVT-VSYAF 1100
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 27.7 bits (62), Expect = 7.0
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 1 MKKKKKKKKKKKKKKKKKIVIAIDKIY 27
++ + +K +KI + +
Sbjct: 9 GSRRNGRISSRKSASARKIPKGVIHVQ 35
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 28.7 bits (64), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 169 VCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGLPYEC 216
VC CG+ ++++ KK + + C+ C ++ F +V LPY
Sbjct: 1151 VCDICGLIAIASYKK-DSYECRSC--------QNRTRFSQVY-LPYAA 1188
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 27.4 bits (60), Expect = 9.1
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 133 AAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKIC 192
+C CG F+ A+ C DC+ C C S + LC+
Sbjct: 17 GLEPSCKSCGAHFA--------NTARKQTCLDCKKNFCMTC--SSQVGNGPRLCLLCQRF 66
Query: 193 AETREMW 199
T
Sbjct: 67 RATAFQR 73
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 27.5 bits (61), Expect = 9.7
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 7/34 (20%)
Query: 1 MKKKKKKKKKKK-------KKKKKKIVIAIDKIY 27
M KK +K+ + V + I
Sbjct: 1 MAPKKTAPVQKEVISYGPPNVGANENVFGVCHIM 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.397
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,284,888
Number of extensions: 682697
Number of successful extensions: 3625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3284
Number of HSP's successfully gapped: 200
Length of query: 754
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 653
Effective length of database: 3,881,772
Effective search space: 2534797116
Effective search space used: 2534797116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.5 bits)