BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy785
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 54 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LVGNKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 114 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 155
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 181 bits (460), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 88/102 (86%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDTDDVPM
Sbjct: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LVGNKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKIN 153
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 179 bits (454), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
+LVGNKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
+LVGNKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 78/99 (78%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+LEILDTAGTEQF +MRDLY+KNGQGFILVYS+ Q +F D+ +R+QI+RVK + VP+
Sbjct: 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
+LVGNK DLE ER V +G +LA + C F+ETSAK+K
Sbjct: 112 ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSK 150
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 75/100 (75%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+ILDTAG E+F AMR+ YM+ G+GF+LV+S+T + +F ++ + QILRVKD D+ PM+
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DL+ +R V +E+G LAR T++E SAK ++N
Sbjct: 115 LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMN 154
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 70 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 129
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V +Q LAR++ F+ETSAK +
Sbjct: 130 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 167
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V +Q LAR++ F+ETSAK +
Sbjct: 113 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 58 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 118 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 155
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 57 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 59 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 118
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 119 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 156
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 57 LLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 117 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 154
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGN+CDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNRCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D++ REQI RVKD+DDVPM
Sbjct: 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V +Q LA+++ F+ETSAK +
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTR 167
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDT G E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDT G E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+ +AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNKCDL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V +Q LAR++ F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V +Q LAR++ F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V +Q LAR++ F+ETSAK +
Sbjct: 113 VLVGNKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTR 150
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTA E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTA E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99
VLVGNK DL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTR 149
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 70/100 (70%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+ILDTAG E+F AMR+ YM+ G GF+LV++I + +FN++ L QILRVKD DD P+V
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE +R V + + ++ + + E SAK ++N
Sbjct: 119 LVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
++ILDTAG E + A+RD Y ++G+GF+LV+SIT +F ++ REQILRVK + D +P+
Sbjct: 57 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++VGNK DLEE R V E+ S A + ++ETSAK + N
Sbjct: 117 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRAN 157
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
++ILDTAG E + A+RD Y ++G+GF+LV+SIT +F ++ REQILRVK + D +P+
Sbjct: 53 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++VGNK DLEE R V E+ S A + ++ETSAK + N
Sbjct: 113 LVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRAN 153
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM
Sbjct: 62 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 121
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LV NK DL R V ++QG +A + ++ETSAK
Sbjct: 122 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 128 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +
Sbjct: 56 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LV NK DL R V ++QG +A + ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LV NK DL R V ++QG +A + ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 124 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +
Sbjct: 56 IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 116 LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 155
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LV NK DL R V ++QG +A + ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 71/100 (71%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPM 60
L+I DT G+ QF AM+ L + G FILVYSIT++ + +L + EQI +K D + +P+
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCD R V + +LAR + C F+ETSAK N
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 68/101 (67%), Gaps = 2/101 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPM 60
L+I DT G+ QF AM+ L + G FILV+S+T++ + +L + + I+++K + +D+P+
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCD E +R V + ++A+ + C F+ETSAK N
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYN 157
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E++ + Y + GFIL+Y IT + +FN + D QI + D+ ++
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQVL 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCD+E+ERVV E+G LA F E SAK +N
Sbjct: 115 LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E++ + Y + GFIL+Y IT + +FN + D QI + D+ ++
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI-KTYSWDNAQVI 132
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCD+EEERVV E+G LA F E SAK ++
Sbjct: 133 LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E++ + Y + GFIL Y IT + +FN + D QI + D+ ++
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQI-KTYSWDNAQVL 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCD E+ERVV E+G LA F E SAK +N
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+EILDTAG E T R+ +M+ G+GF+LVY IT + +F ++ L+ + +K +V ++
Sbjct: 78 MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
LVGNK DL+ R V E+G LA AC F E SA
Sbjct: 137 LVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E++ + Y + GF+L+Y I Q +F + D QI + D+ ++
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI-KTYSWDNAQVI 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDLE+ERVV E G LA F E SAK +N
Sbjct: 132 LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P+
Sbjct: 60 LLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V +G + A F C F+ETSA + N
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHN 158
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
L+I DTAG E+F + Y + G +LVY IT + +F+++ R I +++ + DV
Sbjct: 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI---RNWIRNIEEHASADVE 115
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+++GNKCD+ ++R V KE+G LA + F+ETSAKA +N
Sbjct: 116 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
L+I DTAG E+F + Y + G +LVY IT + +F+++ R I +++ + DV
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI---RNWIRNIEEHASADVE 113
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+++GNKCD+ ++R V KE+G LA + F+ETSAKA +N
Sbjct: 114 KMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E F ++ Y + G +LVY IT + TFN L+ E R ++ ++
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDA-RQHSNSNMVIM 119
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DLE R V KE+G + AR F+ETSAK N
Sbjct: 120 LIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASN 159
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E F ++ Y + G +LVY IT + TFN L+ E R + ++ ++
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIM 130
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DLE R V +E+G + AR F+ETSAK N
Sbjct: 131 LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+++DTAG ++++ Y + G+ILVYS+T+ +F + + ++L + +P++
Sbjct: 51 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 110
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK DL ERV+ E+G +LA ++ FLE+SAK
Sbjct: 111 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 146
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+++DTAG ++++ Y + G+ILVYS+T+ +F + + ++L + +P++
Sbjct: 54 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 113
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK DL ERV+ E+G +LA ++ FLE+SAK
Sbjct: 114 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 149
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+++DTAG ++++ Y + G+ILVYS+T+ +F + + ++L + +P++
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK DL ERV+ E+G +LA ++ FLE+SAK
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 62/96 (64%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+++DTAG ++++ Y + G+ILVYS+T+ +F + + ++L + +P++
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK DL ERV+ E+G +LA ++ FLE+SAK
Sbjct: 116 LVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL R V ++G
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 134
Query: 81 ASLARAFACTFLETSAKAKVN 101
+ A F C F+ETSA N
Sbjct: 135 RACAVVFDCKFIETSAALHHN 155
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL R V ++G
Sbjct: 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 129
Query: 81 ASLARAFACTFLETSAKAKVN 101
+ A F C F+ETSA N
Sbjct: 130 RACAVVFDCKFIETSAALHHN 150
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL R V ++G
Sbjct: 75 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 134
Query: 81 ASLARAFACTFLETSAKAKVN 101
+ A F C F+ETSA N
Sbjct: 135 RACAVVFDCKFIETSAALHHN 155
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P+
Sbjct: 60 LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V +G + A F C F+ETSA + N
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 158
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P+
Sbjct: 91 LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V +G + A F C F+ETSA + N
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T + +F+++ ++I R ++V +
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKL 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL +RVV ++G LA + F+ETSAK N
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYN 158
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 50 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 108
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 109 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 148
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 116 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 155
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 125
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 59/96 (61%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L ++DTAG ++++ + ++ G++LVYS+T+ +F + L +++ VP+V
Sbjct: 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK DL ER V +G LA ++ TF+E+SA+
Sbjct: 134 LVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 142
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 143 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 76 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 134
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 135 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 174
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 125
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL ++VV A + FLETSAK N
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P+
Sbjct: 60 LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V +G + A F F+ETSA + N
Sbjct: 118 ILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y ++ +L+Y +T +++F+++ +I DV ++
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALM 120
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK D ERVV +E G LA+ + F+ETSAK +N
Sbjct: 121 LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80
++ G +++VYSI + +F S+LR Q+ R D VP++LVGNK DL R V E+G
Sbjct: 75 LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG 134
Query: 81 ASLARAFACTFLETSAKAKVN 101
+ A F C F+ETSA + N
Sbjct: 135 RACAVVFDCKFIETSATLQHN 155
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN + ++I R T V +
Sbjct: 72 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 130
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL+++RVV + A A FLETSA N
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN + ++I R T V +
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL+++RVV + A A FLETSA N
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN + ++I R T V +
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKL 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNKCDL+++RVV + A A FLETSA N
Sbjct: 118 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVG KCDL ++VV A + FLETSAK N
Sbjct: 118 LVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 157
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y ++ +G ILVY IT + TF+DL + I + ++D ++
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELL 135
Query: 62 LVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
LVGNK D E +R + ++QG A+ F E SAK N
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G ILVY IT + TF ++ + + D+ ++
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D+ E RVV +QG +LA+ F+E+SAK
Sbjct: 113 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 147
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F A+ Y + G ++VY IT +ST+N LS + + + V ++
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-II 124
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DLE +R V E+ A FLE SAK N
Sbjct: 125 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G ILVY IT + TF ++ + + D+ ++
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D E RVV +QG +LA+ F+E+SAK
Sbjct: 113 LVGNKSD-XETRVVTADQGEALAKELGIPFIESSAK 147
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F+ S + + R + DV ++
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIM 123
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 124 LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F + Y + G ILVY +T + TF ++ + + D+ ++
Sbjct: 58 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 116
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D+ E RVV +QG +LA+ F+E+SAK
Sbjct: 117 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 151
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F + Y + G ILVY +T + TF ++ + + D+ ++
Sbjct: 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 129
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D+ E RVV +QG +LA+ F+E+SAK
Sbjct: 130 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAK 164
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q ++ ++ ++I R +++V +
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKL 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++VV A + FLETSAK N
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q ++ ++ ++I R +++V +
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKL 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++VV A + FLETSAK N
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 158
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111
L+GNK DL ++R V + Q LA + + ETSA N VE D
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLD 181
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE 107
L+GNK DL ++R V + Q LA + + ETSA N VE
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVE 177
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 62/110 (56%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T + +F ++ + Q+ +++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111
L GNK DLE++R V +E+ LA + + ETSA N +E D
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +V
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
L+GNK DL ++R V + Q LA + + ETSA N VE
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L + +T+Q +F ++ + Q+ ++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
L+GNK DL ++R V + Q LA + + ETSA N VE
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 59/107 (55%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L + +T+Q +F ++ + Q+ ++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
L+GNK DL ++R V + Q LA + + ETSA N VE
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F + Y + G ILVY +T + TF ++ + + D+ ++
Sbjct: 54 LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLL 112
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D E RVV +QG +LA+ F+E+SAK
Sbjct: 113 LVGNKSD-XETRVVTADQGEALAKELGIPFIESSAK 147
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG E+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ +
Sbjct: 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+VGNK DLE+ER V ++ S A + TSAK
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG E+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ +
Sbjct: 71 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 129
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+VGNK DLE+ER V ++ S A + TSAK
Sbjct: 130 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 165
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG E+F A+ +Y ++ G ILVY IT + +F + + ++ LR +++ +
Sbjct: 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLC 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+VGNK DLE+ER V ++ S A + TSAK
Sbjct: 116 IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 151
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVL 62
I DTAG E+F A+ +Y + I+VY IT + TF+ L + +RE LR + + +
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAI 115
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
GNKCDL + R V + A + F+ETSAK +N
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 154
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG +F A+ Y + G ++VY IT +ST+N LS + + + V ++
Sbjct: 81 LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-II 139
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DLE +R V E+ A FLE SAK N
Sbjct: 140 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 179
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVL 62
I DTAG E+F A+ +Y + I+VY IT + TF+ L + +RE LR + + +
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVVAI 116
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
GNKCDL + R V + A + F+ETSAK +N
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E+F A+ Y + Q +LV+S T + +F +S RE++ V + D+P
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTA 113
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LV NK DL ++ + E+ LA+ F TS K +N
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + R + DV ++
Sbjct: 57 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ I+VY IT + +F + + + IL + DV +
Sbjct: 52 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIA 110
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL + R V E+G A+ + F ETSAKA N
Sbjct: 111 LVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHN 150
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + R + DV ++
Sbjct: 64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 122
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 123 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF----NDLSDLREQILRVKDTDD 57
EI DTAG E+F ++ Y +N Q ++VY +T +F + + +L EQ + D
Sbjct: 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-----SKD 108
Query: 58 VPMVLVGNKCD-LEE--ERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ + LVGNK D L+E ER V +E+G LA F ETSAK N
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG E+F + Y + QG ILVY +T + TF L + ++ +D+
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX 125
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
LVGNK D +E R V + +G AR + F+E SAK
Sbjct: 126 LVGNKID-KENREVDRNEGLKFARKHSXLFIEASAK 160
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT Q TF +++ R + + + +
Sbjct: 59 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIA 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R+V E+ + A + F+ETSAK +N
Sbjct: 118 LAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMN 157
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + R + DV ++
Sbjct: 52 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 110
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 111 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 150
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F S + + R + DV ++
Sbjct: 53 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIM 111
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R + E+G A+ + F+ETSAK N
Sbjct: 112 LVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYN 151
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + R + DV ++
Sbjct: 57 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 116 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 155
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T+ +F ++ +I ++ DDV +
Sbjct: 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRI 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK D E +VV E A ETSAK VN
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + R + DV ++
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIM 125
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 126 LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L +D ++
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK DLE +V K A + ETSAK +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ DTAG E+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 56 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 113
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK D++E +V K + + R + + SAK+ N
Sbjct: 114 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 151
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ DTAG E+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 55 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 112
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK D++E +V K + + R + + SAK+ N
Sbjct: 113 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 150
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L +D ++
Sbjct: 59 MQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK DLE +V K A + ETSAK +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L +D ++
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK DLE +V K A + ETSAK +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
++ DTAG E+F +RD Y N Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 63 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 120
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK D++E +V K + + R + + SAK+ N
Sbjct: 121 LCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYN 158
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
+RD ++ G F++V+S+T + +F S + E +LR++ D+P++LVGNK DL
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 145
Query: 73 RVVGKEQGASLARAFACTFLETSAKAKVNS 102
R V E+G LA +C +ETSA N+
Sbjct: 146 REVSLEEGRHLAGTLSCKHIETSAALHHNT 175
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 58 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 116
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 156
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 116 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y ++ IL Y IT + +F L + +I + ++ V V
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITV 135
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL E R V +++ + A +LETSAK N
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 56 FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 115 LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 154
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
I DTAG E+F ++ +Y + ++VY IT Q +F L ++ L+ +++ M +
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIA 134
Query: 64 GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
GNKCDL + R V + A + +ETSAK +N
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L +D ++
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK D E +V K A + ETSAK +N
Sbjct: 119 PFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ +
Sbjct: 56 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ + A + F+ETSAK +N
Sbjct: 115 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 154
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMV 61
+I DTAG E++ A+ Y + G +LVY IT +++F ++ L+E LR ++ ++
Sbjct: 60 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE--LRDNADSNIVIL 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
LVGNK DL+ RV+ A+ F+ETSA
Sbjct: 118 LVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSA 152
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ +
Sbjct: 54 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 112
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ + A + F+ETSAK +N
Sbjct: 113 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 152
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + Q I+VY IT TF + +++ R + + ++ +
Sbjct: 56 FEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIA 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ + A + F+ETSAK +N
Sbjct: 115 LAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN 154
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
++D ++ G F++V+S+T + +F S + E +LR++ D+P++LVGNK DL
Sbjct: 68 LQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124
Query: 73 RVVGKEQGASLARAFACTFLETSAKAKVNS 102
R V E+G LA +C +ETSA N+
Sbjct: 125 REVSLEEGRHLAGTLSCKHIETSAALHHNT 154
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEE 72
++D ++ G F++V+S+T + +F S + E +LR++ D+P++LVGNK DL
Sbjct: 78 LQDHCLQTGDAFLIVFSVTDRRSF---SKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 134
Query: 73 RVVGKEQGASLARAFACTFLETSAKAKVNS 102
R V E+G LA +C +ETSA N+
Sbjct: 135 REVSLEEGRHLAGTLSCKHIETSAALHHNT 164
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDV 58
+L++ DTAG E+F ++ Y + G +L+Y +T + +F ++RE + ++D + V
Sbjct: 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF---LNIREWVDMIEDAAHETV 134
Query: 59 PMVLVGNKCDL------EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P++LVGNK D+ E ++ V G LA + F ETSAK N
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ Y + Q I+VY IT + +F + +++ R + + ++ +
Sbjct: 58 FEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIA 116
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F ETSAK N
Sbjct: 117 LSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXN 156
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 2 LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+++ DTAG E+F +M Y +N + VY +T ++F+ L E+ + +D+P
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LVGNKCDL V + A + ETSAK
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E++ ++ +Y + I+V+ +T Q++F ++ L+ + ++ M
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE-LQAQGNPNMVMA 121
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL + R V E + A+ F+ETSAK N
Sbjct: 122 LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 57 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 115 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 167
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L+ R + ++ ++
Sbjct: 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA-RTLASPNIVVI 134
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
L GNK DL+ ER V + + A+ FLETSA
Sbjct: 135 LCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 120
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 121 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 173
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 111
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 112 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTDDV 58
+I DTAG E++ A+ Y + G ++VY I+ S++ + LS+LRE D+V
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-----DDNV 119
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
+ L+GNK DL R V E+ + A+ F ETSA
Sbjct: 120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
++I DTAG E+F ++R + + +L +S+ +F +LS+ +++ + VK+ +
Sbjct: 62 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK D++E +V +E A + ETSAK N
Sbjct: 122 PFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 124 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 124 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 2 LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+++ DTAG E+F +M Y +N + VY T ++F+ L E+ + +D+P
Sbjct: 80 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR 139
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LVGNKCDL V + A + ETSAK
Sbjct: 140 ILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++
Sbjct: 59 LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
L GNK DL+ +R V + + A+ FLETSA
Sbjct: 118 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 152
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++
Sbjct: 62 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 120
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
L GNK DL+ +R V + + A+ FLETSA
Sbjct: 121 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 155
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L++ R+ + ++ ++
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA-RMLASQNIVII 119
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
L GNK DL+ +R V + + A+ FLETSA
Sbjct: 120 LCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
L+I DTAG E+F ++R + + +L +S+ + +F +L + +++ + VKD +
Sbjct: 58 LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK D E+ +V +E +LETSAK N
Sbjct: 118 PFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+ + +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
++I DTAG E+F ++R + + +L +S+ +F +LS+ +++ + VK+ +
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK D+ E +V +E A + ETSAK N
Sbjct: 118 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
++I DTAG E+F ++R + + +L +S+ +F +LS+ +++ + VK+ +
Sbjct: 60 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK D+ E +V +E A + ETSAK N
Sbjct: 120 PFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E++ +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y ++ G IL Y IT +S+F + E + + ++ V +
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL- 138
Query: 62 LVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVN 101
L+GNK DL E R V + SLA + C +ETSAK N
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCA-IETSAKDSSN 179
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T Q +FN++ ++I R +++V +
Sbjct: 49 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKL 107
Query: 62 LVGNKCDL 69
LVGNKCDL
Sbjct: 108 LVGNKCDL 115
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++L
Sbjct: 72 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 130
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 131 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 164
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++L
Sbjct: 60 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 118
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 119 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 152
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ +++ D++ V M L
Sbjct: 81 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-L 139
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ ++ LR ++ ++L
Sbjct: 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIML 139
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ ++ LR ++ + L
Sbjct: 57 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXL 115
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 116 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 149
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LVY I T+ ++ ++ LR ++ + L
Sbjct: 63 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIXL 121
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
VGNK DL R V ++ + A +F+ETSA
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 155
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F + D Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS-----WLCVECTND 111
L GNK D+++ +V K + R + + SAK+ N WL + D
Sbjct: 119 LCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 171
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDV 58
+++ DTAG E+F ++ + + +LVY +T S+F ++ R++ L V +
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 59 PMVLVGNKCDLEE-ERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
P V++GNK D EE +++V ++ LA++ TSAK +N
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND----LSDLREQILRVKDTDDV 58
+I DTAG E++ A+ Y + G ++VY I+ S++ + L++LRE D+V
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENA-----DDNV 116
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
+ L+GNK DL R V ++ + A F ETSA
Sbjct: 117 AVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSA 154
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMV 61
+I DTAG E++ + Y + G +LVY I T+ ++ L+E LR ++ ++
Sbjct: 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVIM 114
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96
LVGNK DL R V ++ + A +F+ETSA
Sbjct: 115 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV-KDTDDVPM 60
L+I D G M D Y+ QG +LVY IT +F +L D + +V ++++ P+
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 61 V-LVGNKCDLEEERVVGKEQGASLAR--AFACTFLETSAKAKVNSWLCVE 107
V LVGNK DLE R + E+ + F+ F+ SAK + +LC +
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGDSVFLCFQ 165
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LV+ +T T+ + +++ + V M L
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-L 135
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
VGNK DL + R V E+ A FLETSA N L E
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 181
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E++ A+ Y + G +LV+ +T T+ + +++ + V M L
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-L 120
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108
VGNK DL + R V E+ A FLETSA N L E
Sbjct: 121 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET 166
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 12/110 (10%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPM 60
L + DTAG E ++ +R L + F+L +S+ +++++ N L ++ R +VP+
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPI 116
Query: 61 VLVGNKCDLEEER--------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
VLVG K DL +++ V+ QG L + A ++E S+K + N
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DVPMVLVGNKCDLEEERVVGK 77
Y+ F++VYS+ ++ +F+ S E + L K+T +P +L+GNK D+ + R V K
Sbjct: 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK 147
Query: 78 EQGASLARAFACTFLETSA 96
+G +LA F C F E SA
Sbjct: 148 AEGVALAGRFGCLFFEVSA 166
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG ++F +R L N F+L +S+ + S+F ++S+ +R P++
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPII 128
Query: 62 LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
LVG + DL E E+ V +E LA A +++E SA + N
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + FIL +S+ +++++ ++S ++ I +K VP+
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVS--KKWIPELKHYAPGVPI 115
Query: 61 VLVGNKCDLEEER----------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
VLVG K DL +++ + QG L + A ++E S+K++ N
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 14/112 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + F+L +S+ +++++ ++ ++ + +K +P+
Sbjct: 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIH--KKWLPELKHYAPGIPI 113
Query: 61 VLVGNKCDLEEERVVGKE----------QGASLARAF-ACTFLETSAKAKVN 101
VLVG K DL +++ K+ QG L + A +LE S+K + N
Sbjct: 114 VLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L + FIL +S+ +++++ +++ LR VP++
Sbjct: 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPII 114
Query: 62 LVGNKCDLEEER----------VVGKEQGASLARAFACT-FLETSAKAKVN 101
LVG K DL +++ + QG L + ++E S+K + N
Sbjct: 115 LVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+ ++D+Y G IL + +T++ T +L+ ++ V ++ P+V
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIV 121
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ NK D++ + + K+ + + + E SAK N
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL + + V E+G +A R A +LE SAK K
Sbjct: 113 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFXPNVPI 132
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL + + V E+G +A R A +LE SAK K
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 132
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL + + V E+G +A R A +LE SAK K
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 110
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 111 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 110
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 111 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 59 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 116
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 117 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 168
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 113
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 113
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 58 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 115
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 58 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 115
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 114
Query: 61 VLVGNKCDLE------------EERVVGKEQGASLA-RAFACTFLETSAKAK 99
+LVGNK DL ++ V E+G +A R A ++E SAK K
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG + + +R L+ + +L + +T+ ++F+++ + R VP++
Sbjct: 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN-RWYPEVNHFCKKVPII 142
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSAKAKVN 101
+VG K DL +++ V +G +AR+ A +LE SA+ N
Sbjct: 143 VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 56 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 114
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 115 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 118
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 119 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 63 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 121
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 122 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 72 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 130
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 131 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F+ + +R + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F+ + +R + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F+ + +R + P++
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPII 263
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + R L + ++ +SI + + ++ + + VK +VP+
Sbjct: 55 LALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPI 112
Query: 61 VLVGNKCDLEEERVVGKE------------QGASLA-RAFACTFLETSAKAK 99
+LVGNK DL + +E +G +A R A ++E SAK K
Sbjct: 113 ILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + ++ +S+ + + ++ + + + VK +VP+
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPI 132
Query: 61 VLVGNKCDLEEERVVGKE------------QGASLA-RAFACTFLETSAKAK 99
+LV NK DL + V E G ++A R A +LE SAK K
Sbjct: 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + +++ ++ +R P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG +LA+ + +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + +++ ++ +R P++
Sbjct: 59 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPII 117
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG +LA+ + +LE SA
Sbjct: 118 LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + +++ ++ +R P++
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPII 118
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG +LA+ + +LE SA
Sbjct: 119 LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L ++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L ++ +S+ + ++F ++ +R + P++
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 111
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 112 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L ++ +S+ + ++F ++ +R + P++
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 113
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 114 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L ++ +S+ + ++F ++ +R + P++
Sbjct: 57 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 115
Query: 62 LVGNKCDLEEER------------VVGKEQGASLARAF-ACTFLETSA 96
LVG K DL +++ + QG ++A+ A +LE SA
Sbjct: 116 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 55 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 111
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 112 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 54 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 110
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 111 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 112
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 113 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 63 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 119
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 120 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 112
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 113 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 116
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 117 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 55 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 111
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 112 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 57 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 113
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 114 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 57 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 113
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 114 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 116
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 117 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVP 59
L + DTAG E + +R L F++ +S+ + S+F ++ + + E T P
Sbjct: 53 LGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT---P 109
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSA 96
+LVG + DL + ++ + E LAR A ++E SA
Sbjct: 110 FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L + DTAG E + +R L + ++ +SI + ++ + ++L VP+
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF--CQGVPI 117
Query: 61 VLVGNKCDL------------EEERVVGKEQGASLARAFACT-FLETSAK 97
+LVG K DL E ++ V ++G S+A T + E SAK
Sbjct: 118 ILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAK 167
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM- 60
L +LDTAG++ + Y ILV+ +++ +F E + + + P+
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 61 -VLVGNKCDLEEER 73
VLV NK DL +R
Sbjct: 135 AVLVANKTDLPPQR 148
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
+ D G ++ + Y +N QG I V + +++D +++L V + D ++L
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLF 124
Query: 64 GNKCDL 69
NK DL
Sbjct: 125 ANKQDL 130
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQG-------------------FILVYSITAQSTFNDL 42
L + DTAG E + +R L G F++ +S+ + ++F ++
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENV 114
Query: 43 SDLREQILRVKDTDDVPMVLVGNKCDLEEER------------VVGKEQGASLARAF-AC 89
+R + P++LVG K DL +++ + QG ++A+ A
Sbjct: 115 RAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 173
Query: 90 TFLETSA 96
+LE SA
Sbjct: 174 KYLECSA 180
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 1 MLEILDTAGTE--QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV 58
+L I D G QF A D + V+S+ + +F + + ++ ++ +V
Sbjct: 68 LLLIRDEGGPPELQFAAWVD-------AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEV 120
Query: 59 PMVLVGNK--CDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
PMVLVG + RV+ + L+ CT+ ET A +N
Sbjct: 121 PMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPM 60
+ D G ++ + Y +N QG I V + N + RE+++R+ D D +
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVL 269
Query: 61 VLVGNKCDL 69
++ NK DL
Sbjct: 270 LVFANKQDL 278
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ LDT G F+AMR G + + + + E I KD VP+V
Sbjct: 54 ITFLDTPGHAAFSAMR----ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAH-VPIV 108
Query: 62 LVGNKCDLEE 71
L NKCD E
Sbjct: 109 LAINKCDKAE 118
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPM 60
+ D G ++ + Y +N QG I V + N + RE+++R+ D D +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVL 104
Query: 61 VLVGNKCDL 69
++ NK DL
Sbjct: 105 LVFANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPM 60
+ D G ++ + Y +N QG I V + N + RE+++R+ D D +
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVL 120
Query: 61 VLVGNKCDL 69
++ NK DL
Sbjct: 121 LVFANKQDL 129
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPM 60
+ D G ++ + Y +N QG I V + N + RE+++R+ D D +
Sbjct: 50 VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVL 106
Query: 61 VLVGNKCDL 69
++ NK DL
Sbjct: 107 LVFANKQDL 115
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD---DVPM 60
+ D G ++ + Y +N QG I V + N + RE+++R+ D D +
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN---EAREELMRMLAEDELRDAVL 121
Query: 61 VLVGNKCDL 69
++ NK DL
Sbjct: 122 LVFANKQDL 130
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA------QSTFNDLSDLREQILRVKDT 55
++I D G +F +M + Y + +VY I A +++ N+L +L ++
Sbjct: 69 IKIWDIGGQPRFRSMWERYCRGVNA--IVYMIDAADREKIEASRNELHNLLDK----PQL 122
Query: 56 DDVPMVLVGNKCDL 69
+P++++GNK DL
Sbjct: 123 QGIPVLVLGNKRDL 136
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
+ D G ++ + Y +N QG I V + + +D +++L+ + D +++
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136
Query: 64 GNKCDL 69
NK D+
Sbjct: 137 ANKQDM 142
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64
D G Q + Y G + + F++ + + + + DVP V++G
Sbjct: 72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG 131
Query: 65 NKCD 68
NK D
Sbjct: 132 NKID 135
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64
D G Q + Y G + + F++ + + + + DVP V++G
Sbjct: 50 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG 109
Query: 65 NKCD 68
NK D
Sbjct: 110 NKID 113
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 29/68 (42%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+++ D G +F +M + Y + + + Q + +L +P++
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 62 LVGNKCDL 69
++GNK DL
Sbjct: 138 VLGNKRDL 145
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/68 (19%), Positives = 29/68 (42%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+++ D G +F +M + Y + + + Q + +L +P++
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 62 LVGNKCDL 69
++GNK DL
Sbjct: 129 VLGNKRDL 136
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
+ D G ++ + Y +N QG I V + + D ++L + D +++
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF 127
Query: 64 GNKCDL 69
NK DL
Sbjct: 128 ANKQDL 133
>pdb|3T8T|A Chain A, Crystal Structure Of Staphylococcus Aureus Cymr Oxidized
Form
Length = 143
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL 42
+ T G T M L K GQG I + SI ++ +DL
Sbjct: 6 ISTKGRYGLTLMISLAKKEGQGXISLKSIAEENNLSDL 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,066,788
Number of Sequences: 62578
Number of extensions: 107849
Number of successful extensions: 687
Number of sequences better than 100.0: 294
Number of HSP's better than 100.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 294
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)