Query psy785
Match_columns 112
No_of_seqs 116 out of 1243
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 20:25:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.1E-34 2.4E-39 173.3 10.7 109 1-110 59-168 (205)
2 KOG0078|consensus 100.0 1.8E-34 3.9E-39 174.2 11.3 109 1-110 62-170 (207)
3 KOG0092|consensus 100.0 1.8E-34 3.8E-39 171.8 9.7 110 1-111 55-164 (200)
4 KOG0094|consensus 100.0 4E-33 8.6E-38 166.5 10.3 109 2-110 73-181 (221)
5 KOG0093|consensus 100.0 1.3E-32 2.8E-37 158.0 8.7 110 1-111 71-180 (193)
6 KOG0098|consensus 100.0 1.7E-32 3.7E-37 162.8 9.1 109 1-110 56-164 (216)
7 KOG0394|consensus 100.0 2.2E-32 4.9E-37 161.9 9.5 110 1-110 59-174 (210)
8 cd04121 Rab40 Rab40 subfamily. 100.0 5.3E-31 1.1E-35 161.1 12.5 108 2-111 57-164 (189)
9 cd04120 Rab12 Rab12 subfamily. 100.0 9.5E-31 2.1E-35 161.3 12.8 110 1-111 50-160 (202)
10 KOG0079|consensus 100.0 1.6E-31 3.4E-36 153.8 8.2 109 1-111 58-166 (198)
11 KOG0087|consensus 100.0 4.5E-31 9.8E-36 159.3 8.4 108 2-110 65-172 (222)
12 KOG0081|consensus 100.0 8.4E-31 1.8E-35 152.5 9.0 111 1-111 68-178 (219)
13 KOG0088|consensus 100.0 3.6E-31 7.8E-36 153.9 7.4 108 2-110 64-171 (218)
14 KOG0080|consensus 100.0 3.8E-31 8.2E-36 154.0 6.6 111 1-111 61-171 (209)
15 KOG0091|consensus 100.0 3E-30 6.4E-35 150.6 10.0 111 1-111 59-170 (213)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.4E-30 2E-34 154.8 11.7 108 2-111 55-177 (182)
17 PTZ00099 rab6; Provisional 100.0 1.4E-29 3.1E-34 153.3 12.3 110 1-111 30-139 (176)
18 cd04133 Rop_like Rop subfamily 100.0 1E-29 2.3E-34 153.9 11.1 109 1-111 50-170 (176)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.5E-29 5.4E-34 151.8 12.7 110 2-111 52-161 (172)
20 KOG0083|consensus 100.0 1.7E-30 3.8E-35 147.4 5.8 110 1-111 48-157 (192)
21 cd04127 Rab27A Rab27a subfamil 100.0 4.7E-29 1E-33 151.2 12.4 110 2-111 65-174 (180)
22 cd01875 RhoG RhoG subfamily. 100.0 8.5E-29 1.8E-33 151.7 12.4 108 2-111 53-174 (191)
23 cd04131 Rnd Rnd subfamily. Th 100.0 6.2E-29 1.3E-33 150.8 11.2 108 2-111 51-173 (178)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-28 2.3E-33 154.7 12.5 108 1-110 62-184 (232)
25 cd04136 Rap_like Rap-like subf 100.0 1.7E-28 3.7E-33 146.3 12.8 110 2-111 51-160 (163)
26 KOG0086|consensus 100.0 3.1E-29 6.7E-34 145.2 8.7 108 1-109 59-166 (214)
27 cd04175 Rap1 Rap1 subgroup. T 100.0 2E-28 4.3E-33 146.5 12.5 110 2-111 51-160 (164)
28 cd04122 Rab14 Rab14 subfamily. 100.0 2E-28 4.4E-33 146.8 12.3 109 2-111 53-161 (166)
29 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-28 3.3E-33 150.9 11.7 107 1-111 67-193 (195)
30 cd04144 Ras2 Ras2 subfamily. 100.0 4.5E-28 9.7E-33 148.3 12.5 110 2-111 49-160 (190)
31 cd04176 Rap2 Rap2 subgroup. T 100.0 6.3E-28 1.4E-32 144.1 12.5 110 2-111 51-160 (163)
32 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.6E-28 1.4E-32 148.7 12.5 110 2-111 52-165 (201)
33 smart00176 RAN Ran (Ras-relate 100.0 4.8E-28 1E-32 149.2 11.8 106 2-111 46-151 (200)
34 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.9E-28 1.1E-32 146.5 11.4 108 2-111 51-172 (175)
35 PTZ00369 Ras-like protein; Pro 100.0 1.3E-27 2.9E-32 146.1 13.2 110 2-111 55-164 (189)
36 cd04117 Rab15 Rab15 subfamily. 100.0 1.4E-27 3E-32 142.7 12.9 109 2-111 51-159 (161)
37 cd04109 Rab28 Rab28 subfamily. 100.0 1.5E-27 3.2E-32 148.5 12.9 110 2-111 52-163 (215)
38 cd04126 Rab20 Rab20 subfamily. 100.0 1.9E-27 4.1E-32 148.2 13.1 109 2-111 46-187 (220)
39 cd01865 Rab3 Rab3 subfamily. 100.0 2.7E-27 5.8E-32 141.9 12.8 109 2-111 52-160 (165)
40 cd04111 Rab39 Rab39 subfamily. 100.0 2.3E-27 5E-32 147.3 12.7 110 2-111 54-163 (211)
41 cd01871 Rac1_like Rac1-like su 100.0 1.7E-27 3.6E-32 144.1 11.7 108 2-111 51-172 (174)
42 cd04106 Rab23_lke Rab23-like s 100.0 2.5E-27 5.4E-32 141.3 12.2 108 2-111 53-160 (162)
43 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-27 6.5E-32 141.1 12.6 110 2-111 52-161 (164)
44 smart00173 RAS Ras subfamily o 100.0 3.5E-27 7.7E-32 140.9 12.7 110 2-111 50-159 (164)
45 cd04140 ARHI_like ARHI subfami 100.0 5.2E-27 1.1E-31 140.6 13.3 110 2-111 51-162 (165)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.1E-27 8.9E-32 141.0 12.1 109 2-111 53-161 (166)
47 cd01867 Rab8_Rab10_Rab13_like 100.0 7.4E-27 1.6E-31 140.2 12.7 109 2-111 54-162 (167)
48 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.6E-27 1.4E-31 141.0 12.4 110 2-111 51-162 (170)
49 cd04119 RJL RJL (RabJ-Like) su 99.9 9.5E-27 2.1E-31 139.2 12.3 110 2-111 51-164 (168)
50 PLN03071 GTP-binding nuclear p 99.9 3.9E-27 8.5E-32 147.0 10.9 107 1-111 63-169 (219)
51 PF00071 Ras: Ras family; Int 99.9 7.2E-27 1.6E-31 139.3 11.6 109 2-111 50-158 (162)
52 KOG0095|consensus 99.9 6.5E-28 1.4E-32 139.3 6.7 109 1-110 57-165 (213)
53 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.7E-26 3.8E-31 137.3 13.0 109 2-111 51-159 (162)
54 cd04112 Rab26 Rab26 subfamily. 99.9 1.5E-26 3.1E-31 141.7 12.5 109 2-111 52-160 (191)
55 cd04128 Spg1 Spg1p. Spg1p (se 99.9 9.8E-27 2.1E-31 141.6 11.6 109 1-111 50-163 (182)
56 cd04110 Rab35 Rab35 subfamily. 99.9 2.3E-26 4.9E-31 141.7 13.1 108 2-111 57-164 (199)
57 smart00174 RHO Rho (Ras homolo 99.9 1.4E-26 3E-31 139.6 11.3 108 2-111 48-169 (174)
58 cd04134 Rho3 Rho3 subfamily. 99.9 1.1E-26 2.4E-31 142.1 10.9 108 2-111 50-171 (189)
59 cd04177 RSR1 RSR1 subgroup. R 99.9 2.9E-26 6.4E-31 137.7 12.5 110 2-111 51-161 (168)
60 cd04149 Arf6 Arf6 subfamily. 99.9 1.4E-26 3E-31 139.4 10.9 109 2-112 55-168 (168)
61 cd04103 Centaurin_gamma Centau 99.9 2.5E-26 5.5E-31 137.0 11.8 105 2-111 49-156 (158)
62 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.4E-26 7.4E-31 136.7 12.3 108 2-111 54-161 (164)
63 cd00877 Ran Ran (Ras-related n 99.9 1.9E-26 4.1E-31 138.5 11.1 106 2-111 51-156 (166)
64 cd04116 Rab9 Rab9 subfamily. 99.9 4.4E-26 9.5E-31 137.0 12.7 109 2-111 56-168 (170)
65 cd01866 Rab2 Rab2 subfamily. 99.9 4.6E-26 1E-30 136.9 12.7 109 2-111 55-163 (168)
66 cd01868 Rab11_like Rab11-like. 99.9 4.7E-26 1E-30 136.2 12.6 109 2-111 54-162 (165)
67 cd01864 Rab19 Rab19 subfamily. 99.9 5.9E-26 1.3E-30 135.9 12.9 109 2-111 54-163 (165)
68 cd04113 Rab4 Rab4 subfamily. 99.9 5.5E-26 1.2E-30 135.5 12.6 109 2-111 51-159 (161)
69 cd04115 Rab33B_Rab33A Rab33B/R 99.9 4.7E-26 1E-30 137.1 12.2 110 2-111 53-166 (170)
70 cd04125 RabA_like RabA-like su 99.9 7.9E-26 1.7E-30 138.1 13.1 109 2-111 51-159 (188)
71 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 6E-26 1.3E-30 141.6 12.6 107 2-110 51-172 (222)
72 cd04132 Rho4_like Rho4-like su 99.9 7.3E-26 1.6E-30 138.0 12.2 108 2-111 51-164 (187)
73 PLN03110 Rab GTPase; Provision 99.9 8.4E-26 1.8E-30 140.7 12.7 109 2-111 63-171 (216)
74 cd04146 RERG_RasL11_like RERG/ 99.9 9.4E-26 2E-30 135.1 11.5 110 2-111 49-161 (165)
75 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1E-25 2.2E-30 135.9 11.4 107 2-110 50-170 (173)
76 cd04124 RabL2 RabL2 subfamily. 99.9 1.8E-25 3.9E-30 133.5 11.9 105 2-111 51-155 (161)
77 KOG0097|consensus 99.9 3E-26 6.5E-31 131.5 8.0 108 1-109 61-168 (215)
78 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.2E-26 7E-31 136.6 8.5 108 2-111 46-158 (159)
79 cd01860 Rab5_related Rab5-rela 99.9 2.7E-25 5.8E-30 132.6 12.4 109 2-111 52-160 (163)
80 PLN03118 Rab family protein; P 99.9 3.6E-25 7.7E-30 137.5 12.9 110 2-111 64-174 (211)
81 cd01861 Rab6 Rab6 subfamily. 99.9 4.3E-25 9.4E-30 131.5 12.6 109 2-111 51-159 (161)
82 PLN03108 Rab family protein; P 99.9 3.7E-25 8.1E-30 137.3 12.6 109 2-111 57-165 (210)
83 cd01863 Rab18 Rab18 subfamily. 99.9 5.5E-25 1.2E-29 131.1 12.7 109 2-111 51-159 (161)
84 PLN00223 ADP-ribosylation fact 99.9 1.8E-25 3.8E-30 136.0 10.5 108 2-111 63-175 (181)
85 cd04143 Rhes_like Rhes_like su 99.9 5.9E-25 1.3E-29 139.2 13.1 110 2-111 50-168 (247)
86 KOG0395|consensus 99.9 3.9E-25 8.4E-30 135.6 11.9 111 1-111 52-162 (196)
87 smart00175 RAB Rab subfamily o 99.9 5.3E-25 1.2E-29 131.3 12.2 109 2-111 51-159 (164)
88 cd04123 Rab21 Rab21 subfamily. 99.9 8.9E-25 1.9E-29 130.0 12.6 109 2-111 51-159 (162)
89 smart00177 ARF ARF-like small 99.9 8E-26 1.7E-30 136.8 8.0 108 2-111 59-171 (175)
90 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.1E-25 2.4E-30 134.9 8.4 108 2-111 46-163 (164)
91 cd04148 RGK RGK subfamily. Th 99.9 7.6E-25 1.6E-29 136.9 12.2 108 2-111 52-160 (221)
92 cd04158 ARD1 ARD1 subfamily. 99.9 5E-25 1.1E-29 132.6 10.4 108 2-111 45-158 (169)
93 cd04118 Rab24 Rab24 subfamily. 99.9 1.2E-24 2.6E-29 133.2 12.1 108 2-111 52-163 (193)
94 cd04139 RalA_RalB RalA/RalB su 99.9 2.1E-24 4.6E-29 128.6 12.8 110 2-111 50-159 (164)
95 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-24 2.8E-29 133.9 11.9 110 2-111 51-171 (198)
96 KOG0393|consensus 99.9 4.1E-25 9E-30 133.9 8.8 107 2-110 55-175 (198)
97 cd04154 Arl2 Arl2 subfamily. 99.9 1.9E-24 4E-29 130.5 11.4 108 2-111 60-172 (173)
98 cd04147 Ras_dva Ras-dva subfam 99.9 3.1E-24 6.8E-29 132.1 12.4 110 2-111 49-160 (198)
99 cd04135 Tc10 TC10 subfamily. 99.9 2.5E-24 5.5E-29 129.7 11.1 108 2-111 50-171 (174)
100 cd01862 Rab7 Rab7 subfamily. 99.9 7.7E-24 1.7E-28 127.2 12.5 110 2-111 51-164 (172)
101 cd04157 Arl6 Arl6 subfamily. 99.9 9E-24 1.9E-28 125.8 11.7 109 2-112 47-162 (162)
102 cd00876 Ras Ras family. The R 99.9 1.6E-23 3.4E-28 124.3 12.7 110 2-111 49-158 (160)
103 cd04160 Arfrp1 Arfrp1 subfamil 99.9 9.3E-24 2E-28 126.5 11.3 109 2-112 52-167 (167)
104 cd04137 RheB Rheb (Ras Homolog 99.9 1.7E-23 3.6E-28 126.9 12.2 110 2-111 51-160 (180)
105 cd04161 Arl2l1_Arl13_like Arl2 99.9 3E-24 6.6E-29 129.0 8.9 110 2-111 45-166 (167)
106 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.6E-23 3.6E-28 126.5 11.3 108 2-111 61-173 (174)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.2E-23 2.6E-28 128.1 10.8 108 2-111 54-167 (183)
108 PTZ00133 ADP-ribosylation fact 99.9 1.8E-23 4E-28 127.2 11.3 108 2-111 63-175 (182)
109 cd04114 Rab30 Rab30 subfamily. 99.9 5.9E-23 1.3E-27 123.2 12.9 109 2-111 58-166 (169)
110 cd04151 Arl1 Arl1 subfamily. 99.9 8.5E-24 1.8E-28 125.8 9.0 108 2-111 45-157 (158)
111 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.3E-23 2.7E-28 125.1 9.7 108 2-111 46-159 (160)
112 cd01892 Miro2 Miro2 subfamily. 99.9 1.2E-23 2.7E-28 126.6 9.7 107 2-111 56-163 (169)
113 cd00154 Rab Rab family. Rab G 99.9 8.4E-23 1.8E-27 120.6 12.7 109 2-111 51-159 (159)
114 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-23 4.7E-28 123.9 10.0 109 2-112 45-158 (158)
115 cd04129 Rho2 Rho2 subfamily. 99.9 3.6E-23 7.8E-28 126.4 11.0 108 2-111 51-170 (187)
116 cd01870 RhoA_like RhoA-like su 99.9 5.5E-23 1.2E-27 124.0 11.6 108 2-111 51-172 (175)
117 cd00879 Sar1 Sar1 subfamily. 99.9 9.4E-23 2E-27 124.6 11.3 109 2-112 65-189 (190)
118 cd01893 Miro1 Miro1 subfamily. 99.9 1.7E-22 3.7E-27 121.2 11.6 108 2-111 49-161 (166)
119 cd00157 Rho Rho (Ras homology) 99.9 1.9E-22 4.2E-27 121.0 11.2 108 2-111 50-170 (171)
120 smart00178 SAR Sar1p-like memb 99.9 2.6E-22 5.6E-27 122.4 10.7 109 2-112 63-183 (184)
121 KOG4252|consensus 99.9 1.5E-23 3.2E-28 124.5 4.9 108 2-111 71-178 (246)
122 cd04102 RabL3 RabL3 (Rab-like3 99.9 1E-21 2.2E-26 121.2 11.7 99 2-100 56-176 (202)
123 cd01890 LepA LepA subfamily. 99.9 1.4E-21 3.1E-26 118.2 11.5 103 2-111 69-174 (179)
124 PF00025 Arf: ADP-ribosylation 99.9 1.6E-21 3.5E-26 118.0 10.3 109 2-112 60-174 (175)
125 cd04159 Arl10_like Arl10-like 99.9 7.2E-21 1.6E-25 112.4 9.4 108 2-111 46-158 (159)
126 PTZ00132 GTP-binding nuclear p 99.9 3E-20 6.6E-25 115.6 12.4 105 2-110 60-164 (215)
127 KOG3883|consensus 99.8 3.8E-20 8.2E-25 107.4 10.6 110 1-110 61-171 (198)
128 cd04155 Arl3 Arl3 subfamily. 99.8 9.1E-20 2E-24 109.8 12.5 106 2-112 60-173 (173)
129 cd01898 Obg Obg subfamily. Th 99.8 2.9E-20 6.2E-25 111.5 10.1 110 1-111 49-168 (170)
130 KOG0073|consensus 99.8 4.2E-20 9.1E-25 108.1 10.2 109 1-111 61-175 (185)
131 PLN00023 GTP-binding protein; 99.8 5E-20 1.1E-24 119.6 10.7 88 2-89 85-189 (334)
132 KOG0070|consensus 99.8 2E-20 4.4E-25 111.4 7.8 109 1-111 62-175 (181)
133 PRK12299 obgE GTPase CgtA; Rev 99.8 8.8E-20 1.9E-24 119.8 11.4 110 2-111 208-325 (335)
134 cd01897 NOG NOG1 is a nucleola 99.8 1.5E-19 3.3E-24 108.2 9.9 106 2-111 49-165 (168)
135 KOG0075|consensus 99.8 1.4E-19 2.9E-24 104.5 9.1 109 2-112 67-180 (186)
136 cd04171 SelB SelB subfamily. 99.8 3.2E-19 7E-24 106.2 11.0 104 1-111 52-163 (164)
137 TIGR02528 EutP ethanolamine ut 99.8 2.7E-19 5.9E-24 104.7 8.2 98 3-110 38-141 (142)
138 cd01879 FeoB Ferrous iron tran 99.8 2.4E-18 5.2E-23 102.0 10.5 102 2-111 45-154 (158)
139 TIGR02729 Obg_CgtA Obg family 99.8 1.9E-18 4.1E-23 113.5 10.8 109 2-111 207-326 (329)
140 cd00882 Ras_like_GTPase Ras-li 99.8 1.2E-17 2.5E-22 97.4 12.6 110 2-111 47-157 (157)
141 KOG0071|consensus 99.8 2.6E-18 5.7E-23 98.5 8.7 109 1-111 62-175 (180)
142 TIGR01393 lepA GTP-binding pro 99.8 3.7E-18 8.1E-23 119.2 10.9 103 2-111 72-177 (595)
143 cd01881 Obg_like The Obg-like 99.8 3.6E-18 7.8E-23 102.8 9.4 110 2-111 46-174 (176)
144 cd01888 eIF2_gamma eIF2-gamma 99.8 3.5E-18 7.7E-23 105.6 9.0 103 2-111 85-196 (203)
145 cd01891 TypA_BipA TypA (tyrosi 99.8 4.9E-18 1.1E-22 104.2 9.4 99 2-105 67-173 (194)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.3E-17 2.9E-22 99.7 10.2 105 2-111 52-163 (168)
147 TIGR00157 ribosome small subun 99.8 5.1E-18 1.1E-22 107.5 8.8 96 11-111 24-120 (245)
148 cd01878 HflX HflX subfamily. 99.8 1E-17 2.2E-22 103.5 9.6 103 2-111 91-202 (204)
149 KOG0076|consensus 99.8 2.7E-18 5.9E-23 101.5 6.1 108 2-111 71-184 (197)
150 PRK15467 ethanolamine utilizat 99.8 1.2E-17 2.6E-22 99.7 9.0 97 4-111 41-144 (158)
151 KOG4423|consensus 99.7 7.5E-19 1.6E-23 105.0 3.2 110 2-111 77-191 (229)
152 PRK04213 GTP-binding protein; 99.7 3.1E-18 6.8E-23 105.5 5.9 104 2-111 54-189 (201)
153 COG1100 GTPase SAR1 and relate 99.7 5.3E-17 1.2E-21 101.1 10.7 108 2-110 56-181 (219)
154 TIGR00231 small_GTP small GTP- 99.7 7.1E-17 1.5E-21 94.9 10.4 107 2-110 52-160 (161)
155 PRK05433 GTP-binding protein L 99.7 6.1E-17 1.3E-21 113.3 11.4 103 2-111 76-181 (600)
156 KOG0072|consensus 99.7 2.7E-17 5.8E-22 94.8 7.7 111 1-111 63-176 (182)
157 cd01894 EngA1 EngA1 subfamily. 99.7 8E-17 1.7E-21 95.2 9.9 101 2-112 47-156 (157)
158 PRK12297 obgE GTPase CgtA; Rev 99.7 2.1E-16 4.5E-21 106.6 12.1 106 2-111 208-324 (424)
159 TIGR00436 era GTP-binding prot 99.7 1.4E-16 3.1E-21 102.3 10.6 103 2-111 50-161 (270)
160 cd01889 SelB_euk SelB subfamil 99.7 1.9E-16 4.2E-21 97.0 10.7 107 1-112 69-184 (192)
161 PRK03003 GTP-binding protein D 99.7 9.5E-17 2E-21 110.0 9.4 105 2-111 261-379 (472)
162 TIGR00487 IF-2 translation ini 99.7 2.1E-16 4.4E-21 110.3 10.9 101 2-110 137-246 (587)
163 cd00881 GTP_translation_factor 99.7 2.5E-16 5.5E-21 95.6 9.8 105 2-111 64-184 (189)
164 KOG0096|consensus 99.7 1.2E-17 2.6E-22 100.0 3.8 106 2-111 61-166 (216)
165 TIGR03156 GTP_HflX GTP-binding 99.7 2.4E-16 5.2E-21 104.4 10.2 102 2-111 239-349 (351)
166 PRK15494 era GTPase Era; Provi 99.7 3.8E-16 8.3E-21 103.1 10.2 102 1-111 101-213 (339)
167 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3E-16 6.6E-21 106.5 9.9 97 2-111 253-357 (442)
168 TIGR00437 feoB ferrous iron tr 99.7 2.3E-16 4.9E-21 110.4 9.2 102 2-111 43-152 (591)
169 COG2229 Predicted GTPase [Gene 99.7 9.9E-16 2.2E-20 91.5 10.6 103 2-110 70-174 (187)
170 TIGR03594 GTPase_EngA ribosome 99.7 4.9E-16 1.1E-20 105.3 10.6 103 2-110 222-340 (429)
171 PRK12296 obgE GTPase CgtA; Rev 99.7 5.3E-16 1.2E-20 106.1 10.3 109 2-111 208-337 (500)
172 PRK05291 trmE tRNA modificatio 99.7 2.4E-16 5.1E-21 107.4 8.2 95 2-111 265-367 (449)
173 PRK03003 GTP-binding protein D 99.7 5.7E-16 1.2E-20 106.2 10.1 100 2-111 88-196 (472)
174 CHL00189 infB translation init 99.7 8.6E-16 1.9E-20 109.1 10.2 101 2-110 297-406 (742)
175 PF00009 GTP_EFTU: Elongation 99.7 1.8E-15 3.9E-20 92.5 10.2 106 1-111 71-184 (188)
176 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1E-15 2.2E-20 90.4 8.5 96 2-111 51-154 (157)
177 PRK05306 infB translation init 99.7 1.5E-15 3.3E-20 108.5 10.7 101 2-110 339-448 (787)
178 TIGR00475 selB selenocysteine- 99.7 1.6E-15 3.4E-20 106.1 10.4 101 2-110 52-162 (581)
179 KOG0074|consensus 99.6 2.5E-16 5.3E-21 90.6 4.9 109 1-110 63-175 (185)
180 cd00880 Era_like Era (E. coli 99.6 2.1E-15 4.6E-20 88.6 9.1 105 2-111 47-161 (163)
181 PRK12298 obgE GTPase CgtA; Rev 99.6 4.6E-15 9.9E-20 99.4 10.9 109 2-111 209-330 (390)
182 TIGR00491 aIF-2 translation in 99.6 3.7E-15 8.1E-20 104.0 10.6 101 2-110 71-212 (590)
183 KOG1673|consensus 99.6 2E-15 4.4E-20 88.2 7.7 106 2-109 71-181 (205)
184 TIGR03680 eif2g_arch translati 99.6 2.6E-15 5.7E-20 101.3 9.2 107 2-111 82-193 (406)
185 TIGR00483 EF-1_alpha translati 99.6 1.1E-15 2.4E-20 103.7 7.4 103 1-106 86-199 (426)
186 PRK11058 GTPase HflX; Provisio 99.6 7.9E-15 1.7E-19 99.3 10.9 104 2-111 247-359 (426)
187 PRK04000 translation initiatio 99.6 5.8E-15 1.2E-19 99.7 9.6 106 2-111 87-198 (411)
188 cd01895 EngA2 EngA2 subfamily. 99.6 2.4E-14 5.2E-19 85.6 11.4 105 2-111 52-172 (174)
189 PRK00093 GTP-binding protein D 99.6 1.4E-14 3.1E-19 98.4 10.7 98 2-111 51-159 (435)
190 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.9E-14 4.1E-19 89.3 10.1 101 1-105 78-185 (208)
191 PF08477 Miro: Miro-like prote 99.6 3.8E-15 8.3E-20 84.7 6.2 65 2-68 52-119 (119)
192 PRK00089 era GTPase Era; Revie 99.6 1.6E-14 3.6E-19 93.7 9.7 105 2-111 55-168 (292)
193 TIGR01394 TypA_BipA GTP-bindin 99.6 1.2E-14 2.7E-19 101.7 9.5 106 1-111 65-188 (594)
194 PRK12317 elongation factor 1-a 99.6 9E-15 2E-19 99.2 8.1 104 1-106 85-197 (425)
195 cd04163 Era Era subfamily. Er 99.6 4E-14 8.7E-19 84.0 9.5 105 2-111 53-166 (168)
196 cd01883 EF1_alpha Eukaryotic e 99.6 2.3E-14 5E-19 89.6 8.3 100 1-104 78-195 (219)
197 PRK09518 bifunctional cytidyla 99.6 5.3E-14 1.2E-18 100.5 10.9 100 2-111 325-433 (712)
198 PRK10512 selenocysteinyl-tRNA- 99.6 6.1E-14 1.3E-18 98.6 10.8 102 2-111 53-163 (614)
199 PRK09518 bifunctional cytidyla 99.6 3.7E-14 8.1E-19 101.3 9.7 103 2-111 500-618 (712)
200 TIGR03594 GTPase_EngA ribosome 99.6 7.6E-14 1.6E-18 94.7 10.5 98 2-111 49-157 (429)
201 TIGR03598 GTPase_YsxC ribosome 99.5 9.3E-14 2E-18 84.3 9.3 97 2-103 66-179 (179)
202 PRK00454 engB GTP-binding prot 99.5 1.2E-13 2.6E-18 84.6 9.8 105 2-111 72-191 (196)
203 cd04105 SR_beta Signal recogni 99.5 6.7E-14 1.5E-18 86.6 8.6 70 2-71 50-123 (203)
204 PRK14845 translation initiatio 99.5 2E-13 4.3E-18 100.0 11.8 101 2-110 528-669 (1049)
205 PRK04004 translation initiatio 99.5 1.5E-13 3.2E-18 96.2 10.4 101 2-110 73-214 (586)
206 PF02421 FeoB_N: Ferrous iron 99.5 5.5E-14 1.2E-18 83.4 7.0 100 2-109 49-156 (156)
207 PRK00093 GTP-binding protein D 99.5 8E-14 1.7E-18 94.8 8.7 103 2-110 223-340 (435)
208 cd04165 GTPBP1_like GTPBP1-lik 99.5 4.8E-13 1E-17 83.9 11.4 104 2-110 86-219 (224)
209 KOG0462|consensus 99.5 1.5E-13 3.3E-18 93.7 9.2 103 2-111 127-232 (650)
210 PRK09554 feoB ferrous iron tra 99.5 2.3E-13 5.1E-18 97.6 10.5 101 2-110 52-164 (772)
211 PRK10218 GTP-binding protein; 99.5 4.2E-13 9.2E-18 94.2 11.4 106 1-111 69-192 (607)
212 cd04167 Snu114p Snu114p subfam 99.5 4.7E-13 1E-17 83.4 9.3 64 2-70 73-136 (213)
213 PF10662 PduV-EutP: Ethanolami 99.5 5E-13 1.1E-17 77.9 8.5 100 3-111 39-143 (143)
214 COG0481 LepA Membrane GTPase L 99.5 3.9E-13 8.4E-18 90.7 9.0 103 2-111 78-183 (603)
215 COG0532 InfB Translation initi 99.5 1.2E-12 2.6E-17 89.1 10.8 98 2-110 57-166 (509)
216 cd01885 EF2 EF2 (for archaea a 99.5 8.6E-13 1.9E-17 82.6 9.3 64 2-70 75-138 (222)
217 PRK12289 GTPase RsgA; Reviewed 99.5 5.6E-13 1.2E-17 88.3 8.9 94 12-111 78-172 (352)
218 cd01884 EF_Tu EF-Tu subfamily. 99.4 4.4E-12 9.6E-17 78.1 10.8 96 2-102 67-171 (195)
219 cd01854 YjeQ_engC YjeQ/EngC. 99.4 1.2E-12 2.6E-17 84.9 8.3 85 21-111 76-161 (287)
220 PRK00098 GTPase RsgA; Reviewed 99.4 9.3E-13 2E-17 85.8 7.6 85 22-111 79-164 (298)
221 TIGR00485 EF-Tu translation el 99.4 2.7E-12 5.8E-17 86.5 9.7 94 2-100 77-179 (394)
222 cd01896 DRG The developmentall 99.4 4E-12 8.7E-17 80.2 9.9 47 58-111 177-223 (233)
223 PTZ00327 eukaryotic translatio 99.4 4.8E-12 1E-16 86.5 10.3 105 2-110 119-229 (460)
224 PLN00043 elongation factor 1-a 99.4 2.3E-12 5E-17 88.0 8.1 98 2-104 87-203 (447)
225 PRK09866 hypothetical protein; 99.4 1.7E-11 3.7E-16 85.9 12.3 108 1-111 231-350 (741)
226 PRK12736 elongation factor Tu; 99.4 8.1E-12 1.7E-16 84.2 10.5 104 2-110 77-197 (394)
227 TIGR02034 CysN sulfate adenyly 99.4 5.6E-12 1.2E-16 85.3 9.4 99 2-104 82-187 (406)
228 cd04168 TetM_like Tet(M)-like 99.4 1.1E-11 2.4E-16 78.4 10.1 83 1-90 65-147 (237)
229 PRK12288 GTPase RsgA; Reviewed 99.4 4.6E-12 9.9E-17 84.0 8.6 87 21-111 118-205 (347)
230 COG1159 Era GTPase [General fu 99.4 1.1E-11 2.4E-16 79.5 9.7 105 1-110 55-168 (298)
231 PRK05124 cysN sulfate adenylyl 99.4 5.3E-12 1.2E-16 86.8 8.8 101 1-105 108-216 (474)
232 cd01855 YqeH YqeH. YqeH is an 99.4 5.9E-12 1.3E-16 77.1 8.0 91 13-111 24-122 (190)
233 cd04169 RF3 RF3 subfamily. Pe 99.4 8.7E-12 1.9E-16 80.1 8.8 85 1-92 72-156 (267)
234 COG1160 Predicted GTPases [Gen 99.3 2.7E-11 5.9E-16 81.5 10.7 104 2-110 228-347 (444)
235 cd01859 MJ1464 MJ1464. This f 99.3 7.3E-12 1.6E-16 74.5 7.0 90 14-110 3-92 (156)
236 cd01876 YihA_EngB The YihA (En 99.3 2.3E-11 5.1E-16 72.2 8.6 103 2-111 47-168 (170)
237 PRK13351 elongation factor G; 99.3 4.1E-11 9E-16 85.7 10.9 66 1-71 74-139 (687)
238 KOG1489|consensus 99.3 5.3E-11 1.2E-15 77.0 10.3 107 2-111 246-364 (366)
239 PRK12735 elongation factor Tu; 99.3 2.7E-11 6E-16 81.7 9.4 104 2-110 77-199 (396)
240 cd00066 G-alpha G protein alph 99.3 2.3E-11 4.9E-16 79.9 8.2 109 2-110 163-307 (317)
241 KOG1707|consensus 99.3 2.2E-11 4.7E-16 83.8 7.4 108 2-109 58-170 (625)
242 PRK13768 GTPase; Provisional 99.3 5.3E-11 1.2E-15 76.0 8.7 108 2-111 99-244 (253)
243 TIGR03597 GTPase_YqeH ribosome 99.3 3.3E-11 7.2E-16 80.4 7.9 93 10-110 50-149 (360)
244 PRK05506 bifunctional sulfate 99.3 4.9E-11 1.1E-15 84.6 8.8 100 1-104 105-211 (632)
245 cd04170 EF-G_bact Elongation f 99.2 8E-11 1.7E-15 75.7 8.9 98 2-106 66-165 (268)
246 cd01886 EF-G Elongation factor 99.2 7.7E-11 1.7E-15 75.9 8.2 92 1-99 65-160 (270)
247 PRK00741 prfC peptide chain re 99.2 6.8E-11 1.5E-15 82.2 8.2 66 1-71 80-145 (526)
248 smart00275 G_alpha G protein a 99.2 1.5E-10 3.2E-15 76.8 9.2 109 2-110 186-330 (342)
249 COG1160 Predicted GTPases [Gen 99.2 2.7E-10 5.8E-15 76.8 10.3 98 2-111 53-162 (444)
250 KOG1145|consensus 99.2 3.4E-10 7.5E-15 77.8 10.9 98 2-110 203-312 (683)
251 PRK12740 elongation factor G; 99.2 2.5E-10 5.3E-15 81.6 10.5 64 2-70 62-125 (668)
252 COG0486 ThdF Predicted GTPase 99.2 1.4E-10 3E-15 78.3 8.2 98 2-110 267-372 (454)
253 KOG0077|consensus 99.2 2E-10 4.3E-15 68.0 7.5 109 1-111 65-190 (193)
254 PRK00049 elongation factor Tu; 99.2 5.4E-10 1.2E-14 75.5 10.5 104 2-110 77-199 (396)
255 CHL00071 tufA elongation facto 99.2 4.1E-10 8.9E-15 76.4 9.3 96 2-102 77-181 (409)
256 PLN03126 Elongation factor Tu; 99.2 5.5E-10 1.2E-14 76.9 9.8 95 2-101 146-249 (478)
257 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 3.1E-10 6.7E-15 71.5 7.7 108 1-111 49-173 (232)
258 PTZ00141 elongation factor 1- 99.1 6.6E-10 1.4E-14 76.1 9.6 98 2-104 87-203 (446)
259 TIGR00484 EF-G translation elo 99.1 7.6E-10 1.6E-14 79.3 10.1 93 1-100 76-172 (689)
260 COG0536 Obg Predicted GTPase [ 99.1 7.4E-10 1.6E-14 72.4 8.8 110 2-111 209-330 (369)
261 PLN03127 Elongation factor Tu; 99.1 1.9E-09 4.2E-14 73.8 10.2 104 2-110 126-248 (447)
262 PF09439 SRPRB: Signal recogni 99.1 1E-09 2.2E-14 66.6 7.9 71 2-72 51-127 (181)
263 TIGR00503 prfC peptide chain r 99.1 6.1E-10 1.3E-14 77.5 7.7 65 1-70 81-145 (527)
264 cd01858 NGP_1 NGP-1. Autoanti 99.1 8.8E-10 1.9E-14 65.6 6.5 85 20-110 5-91 (157)
265 cd01899 Ygr210 Ygr210 subfamil 99.0 3E-09 6.5E-14 70.0 9.2 50 57-110 214-265 (318)
266 cd01849 YlqF_related_GTPase Yl 99.0 2.6E-09 5.6E-14 63.5 7.0 81 25-110 1-81 (155)
267 COG4917 EutP Ethanolamine util 99.0 2.8E-09 6E-14 60.6 6.4 98 4-111 41-143 (148)
268 COG2262 HflX GTPases [General 99.0 1.6E-08 3.4E-13 67.6 10.3 85 21-111 269-353 (411)
269 cd01856 YlqF YlqF. Proteins o 99.0 3E-09 6.4E-14 64.3 6.2 90 12-110 8-97 (171)
270 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 5.9E-09 1.3E-13 61.1 7.3 77 18-101 6-84 (141)
271 COG0370 FeoB Fe2+ transport sy 98.9 6.6E-09 1.4E-13 73.1 8.2 102 2-111 52-161 (653)
272 PRK12739 elongation factor G; 98.9 1.2E-08 2.6E-13 73.3 9.7 93 1-100 74-170 (691)
273 KOG1423|consensus 98.9 1.2E-08 2.7E-13 66.1 8.7 107 1-112 121-269 (379)
274 PRK01889 GTPase RsgA; Reviewed 98.9 1.1E-08 2.4E-13 68.4 8.6 83 21-110 110-193 (356)
275 COG1162 Predicted GTPases [Gen 98.9 1.3E-08 2.9E-13 65.9 8.7 97 11-111 67-164 (301)
276 KOG1144|consensus 98.9 5.1E-09 1.1E-13 74.4 7.1 102 2-111 542-684 (1064)
277 cd04104 p47_IIGP_like p47 (47- 98.9 1.9E-08 4.1E-13 62.1 8.9 102 2-110 54-180 (197)
278 COG2895 CysN GTPases - Sulfate 98.9 1.7E-08 3.7E-13 66.5 8.7 98 1-104 87-193 (431)
279 PRK13796 GTPase YqeH; Provisio 98.9 2.4E-08 5.3E-13 66.9 8.9 82 21-110 66-155 (365)
280 COG5256 TEF1 Translation elong 98.9 1.8E-08 3.8E-13 67.5 7.9 101 2-104 87-201 (428)
281 PRK00007 elongation factor G; 98.8 6E-08 1.3E-12 69.8 10.0 92 1-99 76-171 (693)
282 TIGR03596 GTPase_YlqF ribosome 98.8 2.6E-08 5.6E-13 64.5 7.1 87 15-110 13-99 (276)
283 COG1217 TypA Predicted membran 98.8 7.3E-08 1.6E-12 65.7 9.0 105 2-111 70-192 (603)
284 KOG0090|consensus 98.8 3.1E-07 6.6E-12 56.9 10.7 69 2-70 84-158 (238)
285 TIGR00101 ureG urease accessor 98.8 9E-08 2E-12 59.2 8.4 79 24-111 113-193 (199)
286 TIGR00490 aEF-2 translation el 98.7 2.9E-08 6.3E-13 71.7 6.5 64 2-70 88-151 (720)
287 COG0218 Predicted GTPase [Gene 98.7 1.8E-07 3.8E-12 57.4 8.8 104 2-111 72-194 (200)
288 PF03029 ATP_bind_1: Conserved 98.7 9.9E-09 2.2E-13 65.1 3.3 107 2-109 93-232 (238)
289 PRK09563 rbgA GTPase YlqF; Rev 98.7 8.6E-08 1.9E-12 62.4 6.8 86 16-110 17-102 (287)
290 COG1084 Predicted GTPase [Gene 98.7 1.5E-07 3.2E-12 61.5 7.3 103 2-109 217-331 (346)
291 TIGR00073 hypB hydrogenase acc 98.7 9.2E-08 2E-12 59.5 6.3 55 57-111 148-204 (207)
292 KOG0082|consensus 98.6 4.2E-07 9.2E-12 60.3 9.0 110 1-110 196-340 (354)
293 PRK09435 membrane ATPase/prote 98.6 4.4E-07 9.5E-12 60.1 8.6 98 2-111 151-257 (332)
294 COG4108 PrfC Peptide chain rel 98.6 2.4E-07 5.3E-12 62.7 7.1 87 1-94 82-168 (528)
295 PRK09602 translation-associate 98.6 7.8E-07 1.7E-11 60.3 9.4 44 57-104 217-260 (396)
296 COG3276 SelB Selenocysteine-sp 98.6 7.8E-07 1.7E-11 60.2 8.9 102 2-111 52-159 (447)
297 cd01850 CDC_Septin CDC/Septin. 98.6 2.4E-07 5.2E-12 60.0 6.4 67 23-96 114-184 (276)
298 COG5257 GCD11 Translation init 98.6 1.7E-07 3.8E-12 61.3 5.6 100 2-111 88-199 (415)
299 PLN00116 translation elongatio 98.6 1.9E-07 4.1E-12 68.5 6.5 64 2-70 100-163 (843)
300 TIGR00750 lao LAO/AO transport 98.6 2.7E-07 5.9E-12 60.4 6.5 98 2-111 129-235 (300)
301 COG1163 DRG Predicted GTPase [ 98.6 1E-06 2.2E-11 57.8 8.7 47 58-111 240-286 (365)
302 cd01882 BMS1 Bms1. Bms1 is an 98.5 2.5E-06 5.4E-11 53.8 9.9 91 2-100 85-182 (225)
303 PRK07560 elongation factor EF- 98.5 3E-07 6.6E-12 66.6 6.0 64 2-70 89-152 (731)
304 KOG0458|consensus 98.5 4.5E-07 9.8E-12 63.1 6.5 101 1-104 256-372 (603)
305 COG3596 Predicted GTPase [Gene 98.5 1.6E-06 3.4E-11 55.7 7.9 107 2-111 89-219 (296)
306 KOG1490|consensus 98.5 1.2E-06 2.6E-11 60.4 7.6 103 2-108 217-335 (620)
307 PTZ00416 elongation factor 2; 98.5 5.2E-07 1.1E-11 66.2 6.1 64 2-70 94-157 (836)
308 COG0480 FusA Translation elong 98.4 5E-07 1.1E-11 64.9 5.7 65 1-70 77-141 (697)
309 KOG0468|consensus 98.4 7E-07 1.5E-11 63.4 4.6 64 1-69 198-261 (971)
310 KOG1707|consensus 98.3 2.6E-06 5.7E-11 59.5 6.8 85 22-110 494-579 (625)
311 PF00503 G-alpha: G-protein al 98.3 1.4E-06 3E-11 59.1 5.3 109 2-110 238-386 (389)
312 KOG1532|consensus 98.3 3.9E-05 8.5E-10 49.7 10.9 106 2-110 118-260 (366)
313 KOG0461|consensus 98.3 7.2E-06 1.6E-10 54.6 7.7 101 1-110 71-189 (522)
314 smart00010 small_GTPase Small 98.3 7.9E-06 1.7E-10 46.2 6.9 76 17-103 40-115 (124)
315 KOG3886|consensus 98.2 7.5E-06 1.6E-10 51.6 6.2 68 2-71 55-130 (295)
316 PF01926 MMR_HSR1: 50S ribosom 98.2 1.5E-05 3.2E-10 45.0 7.1 58 2-66 49-116 (116)
317 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 4.2E-05 9E-10 47.1 8.7 107 2-110 51-180 (196)
318 PF06858 NOG1: Nucleolar GTP-b 98.1 2E-05 4.4E-10 38.9 5.8 44 23-68 13-58 (58)
319 KOG1191|consensus 98.1 4.8E-06 1E-10 57.2 4.3 109 2-111 318-447 (531)
320 KOG3905|consensus 98.1 0.00017 3.6E-09 47.9 10.9 54 57-110 222-286 (473)
321 PF00350 Dynamin_N: Dynamin fa 98.1 1.3E-05 2.9E-10 47.9 5.4 62 2-67 103-168 (168)
322 COG5258 GTPBP1 GTPase [General 98.1 0.00012 2.6E-09 49.5 10.0 103 2-109 203-334 (527)
323 smart00053 DYNc Dynamin, GTPas 98.0 5.3E-05 1.1E-09 48.3 7.9 67 1-71 126-206 (240)
324 KOG0099|consensus 98.0 1.5E-05 3.2E-10 51.3 4.4 69 2-70 204-282 (379)
325 PRK10463 hydrogenase nickel in 97.9 1.9E-05 4.2E-10 51.5 4.7 56 56-111 229-286 (290)
326 cd03110 Fer4_NifH_child This p 97.9 0.00045 9.8E-09 41.8 10.1 81 2-92 95-175 (179)
327 COG0378 HypB Ni2+-binding GTPa 97.9 2.7E-05 5.9E-10 47.8 4.5 53 59-111 144-198 (202)
328 KOG0466|consensus 97.9 2.5E-05 5.4E-10 51.3 4.4 101 1-111 126-238 (466)
329 PF05783 DLIC: Dynein light in 97.8 0.00045 9.8E-09 48.1 9.9 109 2-110 75-260 (472)
330 TIGR02836 spore_IV_A stage IV 97.8 0.00077 1.7E-08 46.3 10.3 85 19-109 139-232 (492)
331 PTZ00258 GTP-binding protein; 97.8 0.00056 1.2E-08 46.6 9.5 44 57-100 220-266 (390)
332 KOG1143|consensus 97.6 0.00033 7.3E-09 47.4 6.7 103 1-108 250-382 (591)
333 COG0050 TufB GTPases - transla 97.6 0.0004 8.7E-09 45.6 6.5 89 2-98 77-177 (394)
334 TIGR00991 3a0901s02IAP34 GTP-b 97.5 0.0011 2.4E-08 43.9 8.2 70 1-72 87-168 (313)
335 PRK09601 GTP-binding protein Y 97.5 0.0023 4.9E-08 43.3 9.9 42 57-98 199-241 (364)
336 KOG0705|consensus 97.5 0.00019 4.2E-09 50.4 4.9 94 18-111 90-186 (749)
337 KOG3887|consensus 97.5 0.0037 8.1E-08 40.1 9.7 108 2-111 77-199 (347)
338 COG1161 Predicted GTPases [Gen 97.5 0.0005 1.1E-08 45.7 5.8 91 8-106 18-109 (322)
339 KOG1954|consensus 97.4 0.00053 1.1E-08 46.4 5.4 67 1-71 148-225 (532)
340 cd04178 Nucleostemin_like Nucl 97.4 0.0009 1.9E-08 40.6 5.8 44 25-71 1-44 (172)
341 KOG0467|consensus 97.3 0.00062 1.4E-08 49.5 5.5 62 2-68 74-135 (887)
342 cd01900 YchF YchF subfamily. 97.3 0.0032 7E-08 41.0 7.8 41 58-98 196-237 (274)
343 KOG0465|consensus 97.2 0.00052 1.1E-08 48.8 4.2 63 2-69 106-168 (721)
344 KOG0460|consensus 97.2 0.0025 5.4E-08 42.7 7.1 89 5-98 122-219 (449)
345 COG1703 ArgK Putative periplas 97.2 0.0022 4.7E-08 42.2 6.7 80 22-111 163-251 (323)
346 KOG0085|consensus 97.2 0.00044 9.6E-09 44.0 3.1 109 2-110 201-345 (359)
347 KOG1424|consensus 97.2 0.0023 4.9E-08 44.8 6.5 76 16-98 164-244 (562)
348 PF03308 ArgK: ArgK protein; 97.2 0.00022 4.8E-09 45.8 1.6 80 21-110 140-226 (266)
349 KOG0463|consensus 97.0 0.0046 9.9E-08 42.2 6.9 100 2-107 221-351 (641)
350 KOG0464|consensus 96.9 0.00015 3.1E-09 49.7 -0.8 64 2-70 104-167 (753)
351 cd01853 Toc34_like Toc34-like 96.9 0.0074 1.6E-07 38.8 7.0 69 2-71 81-163 (249)
352 PF04548 AIG1: AIG1 family; I 96.9 0.0084 1.8E-07 37.5 7.0 94 2-97 51-163 (212)
353 KOG2484|consensus 96.8 0.0042 9.2E-08 42.3 5.5 81 12-99 135-217 (435)
354 COG1149 MinD superfamily P-loo 96.8 0.025 5.5E-07 36.8 8.5 78 2-92 166-243 (284)
355 KOG0448|consensus 96.8 0.024 5.2E-07 41.2 9.1 91 2-98 208-310 (749)
356 KOG0459|consensus 96.8 0.0017 3.6E-08 44.4 3.3 103 1-106 158-278 (501)
357 cd02038 FleN-like FleN is a me 96.6 0.034 7.5E-07 32.4 7.8 64 2-70 47-110 (139)
358 KOG2486|consensus 96.5 0.0055 1.2E-07 40.0 4.3 102 2-110 185-312 (320)
359 KOG4273|consensus 96.5 0.016 3.5E-07 37.5 6.2 83 23-109 78-217 (418)
360 PF05049 IIGP: Interferon-indu 96.5 0.017 3.7E-07 39.3 6.6 92 2-100 88-202 (376)
361 TIGR00064 ftsY signal recognit 96.4 0.11 2.3E-06 34.0 9.7 90 2-105 157-259 (272)
362 KOG0469|consensus 96.4 0.006 1.3E-07 43.1 4.0 63 2-69 100-162 (842)
363 PRK13505 formate--tetrahydrofo 95.9 0.11 2.3E-06 37.2 8.1 41 56-98 371-411 (557)
364 PRK14974 cell division protein 95.9 0.17 3.6E-06 34.2 8.8 91 2-106 225-322 (336)
365 KOG0447|consensus 95.8 0.077 1.7E-06 38.2 7.1 69 14-85 439-507 (980)
366 PF11111 CENP-M: Centromere pr 95.7 0.2 4.3E-06 30.6 7.9 86 23-110 64-149 (176)
367 PHA02518 ParA-like protein; Pr 95.7 0.23 4.9E-06 30.7 8.6 64 2-69 79-145 (211)
368 PRK10416 signal recognition pa 95.7 0.25 5.5E-06 33.1 9.2 90 2-105 199-301 (318)
369 cd02036 MinD Bacterial cell di 95.5 0.28 6E-06 29.4 9.4 83 2-92 65-147 (179)
370 cd03111 CpaE_like This protein 95.5 0.2 4.4E-06 27.8 7.0 62 2-66 45-106 (106)
371 KOG2423|consensus 94.9 0.24 5.3E-06 34.4 7.1 75 21-101 211-287 (572)
372 KOG0410|consensus 94.9 0.093 2E-06 35.3 5.1 79 20-109 254-336 (410)
373 TIGR03348 VI_IcmF type VI secr 94.9 0.14 3E-06 40.0 6.6 68 3-71 164-257 (1169)
374 TIGR03371 cellulose_yhjQ cellu 94.8 0.58 1.3E-05 29.6 9.3 65 2-70 117-181 (246)
375 PRK13185 chlL protochlorophyll 94.6 0.74 1.6E-05 29.8 9.2 82 2-92 120-202 (270)
376 cd02117 NifH_like This family 94.5 0.65 1.4E-05 28.9 9.5 87 2-93 119-207 (212)
377 COG4963 CpaE Flp pilus assembl 94.5 1 2.2E-05 30.9 9.2 66 2-71 220-285 (366)
378 COG3640 CooC CO dehydrogenase 94.5 0.78 1.7E-05 29.6 8.5 60 3-70 137-198 (255)
379 COG0012 Predicted GTPase, prob 94.1 0.23 5E-06 33.9 5.6 42 56-98 205-248 (372)
380 cd03114 ArgK-like The function 94.0 0.33 7.1E-06 28.7 5.7 55 2-68 94-148 (148)
381 PRK10818 cell division inhibit 93.8 1.1 2.5E-05 28.9 8.4 66 2-70 116-186 (270)
382 COG0523 Putative GTPases (G3E 93.6 1 2.2E-05 30.4 7.9 66 23-96 116-184 (323)
383 cd03112 CobW_like The function 93.5 0.49 1.1E-05 28.2 5.9 60 3-69 90-158 (158)
384 PF00735 Septin: Septin; Inte 93.5 0.28 6.2E-06 32.2 5.2 44 23-72 113-157 (281)
385 PRK13849 putative crown gall t 93.2 1.4 3E-05 28.1 8.1 64 2-68 86-151 (231)
386 TIGR00959 ffh signal recogniti 92.9 2.3 5E-05 29.8 9.1 84 2-96 185-274 (428)
387 cd02032 Bchl_like This family 92.8 1.7 3.7E-05 28.0 9.2 66 2-69 118-184 (267)
388 PRK00771 signal recognition pa 92.7 2.5 5.5E-05 29.7 9.3 84 2-96 178-267 (437)
389 TIGR01968 minD_bact septum sit 92.6 1.8 3.8E-05 27.6 8.7 62 2-69 114-175 (261)
390 CHL00175 minD septum-site dete 92.5 1.9 4.2E-05 28.0 8.9 62 2-69 129-190 (281)
391 TIGR00993 3a0901s04IAP86 chlor 92.5 0.92 2E-05 33.7 6.8 70 2-71 168-250 (763)
392 TIGR01425 SRP54_euk signal rec 92.4 1.8 3.9E-05 30.4 8.0 84 2-96 185-274 (429)
393 PF09419 PGP_phosphatase: Mito 92.3 1.6 3.6E-05 26.5 8.8 67 39-109 61-127 (168)
394 PF01656 CbiA: CobQ/CobB/MinD/ 92.2 0.62 1.3E-05 28.2 5.2 66 2-71 97-162 (195)
395 KOG3929|consensus 91.8 0.65 1.4E-05 30.5 5.0 16 56-71 189-204 (363)
396 PF14331 ImcF-related_N: ImcF- 91.6 0.86 1.9E-05 29.7 5.6 50 23-72 25-84 (266)
397 cd02037 MRP-like MRP (Multiple 91.1 2.1 4.6E-05 25.6 9.6 84 2-92 70-162 (169)
398 KOG2485|consensus 91.0 0.72 1.6E-05 30.9 4.7 50 16-72 39-88 (335)
399 TIGR01281 DPOR_bchL light-inde 90.7 3.1 6.8E-05 26.8 8.9 66 2-69 118-184 (268)
400 COG3523 IcmF Type VI protein s 89.8 2 4.4E-05 33.9 6.8 68 3-71 177-270 (1188)
401 cd03115 SRP The signal recogni 89.6 3 6.6E-05 24.9 8.4 82 2-94 85-172 (173)
402 cd02040 NifH NifH gene encodes 89.4 4.1 8.9E-05 26.2 9.3 64 2-66 119-184 (270)
403 PRK10867 signal recognition pa 89.2 6.1 0.00013 27.9 9.2 84 2-96 186-275 (433)
404 PF08438 MMR_HSR1_C: GTPase of 88.6 0.89 1.9E-05 25.6 3.3 32 63-98 1-33 (109)
405 cd00477 FTHFS Formyltetrahydro 88.5 3.7 7.9E-05 29.5 6.8 52 56-109 355-408 (524)
406 KOG0781|consensus 87.8 7.7 0.00017 28.0 7.9 91 2-96 469-566 (587)
407 KOG1547|consensus 87.1 2.2 4.8E-05 27.9 4.7 66 23-94 155-223 (336)
408 PF09547 Spore_IV_A: Stage IV 87.0 6.7 0.00015 27.9 7.3 61 43-109 170-232 (492)
409 PF07015 VirC1: VirC1 protein; 86.8 6.3 0.00014 25.4 7.6 99 2-106 86-186 (231)
410 CHL00072 chlL photochlorophyll 85.0 8.9 0.00019 25.4 10.7 66 2-69 118-184 (290)
411 PF02492 cobW: CobW/HypB/UreG, 84.4 2.4 5.2E-05 25.7 3.9 58 23-87 113-170 (178)
412 PRK12727 flagellar biosynthesi 83.9 15 0.00032 27.0 9.7 86 2-98 431-521 (559)
413 cd02042 ParA ParA and ParB of 83.6 5.2 0.00011 21.6 6.9 43 2-47 42-84 (104)
414 KOG1486|consensus 83.0 3.2 6.9E-05 27.4 4.1 47 58-111 239-285 (364)
415 COG2759 MIS1 Formyltetrahydrof 82.9 13 0.00028 26.7 7.1 88 21-110 317-422 (554)
416 TIGR01969 minD_arch cell divis 82.7 9.7 0.00021 24.1 6.8 61 2-69 111-172 (251)
417 PF01268 FTHFS: Formate--tetra 82.6 1.3 2.7E-05 32.0 2.4 85 22-108 320-422 (557)
418 TIGR01007 eps_fam capsular exo 82.3 9.3 0.0002 23.5 7.2 63 2-70 130-193 (204)
419 PF00448 SRP54: SRP54-type pro 82.1 9.8 0.00021 23.7 8.9 83 2-96 86-175 (196)
420 PTZ00386 formyl tetrahydrofola 82.0 15 0.00032 27.2 7.3 52 56-109 436-491 (625)
421 PF10087 DUF2325: Uncharacteri 81.9 6.4 0.00014 21.4 6.2 23 17-39 42-64 (97)
422 KOG0780|consensus 81.5 13 0.00027 26.3 6.6 40 2-41 186-231 (483)
423 PRK11537 putative GTP-binding 80.9 14 0.00031 24.9 7.7 81 4-95 95-186 (318)
424 KOG1487|consensus 80.5 1.9 4.1E-05 28.5 2.5 46 58-111 232-278 (358)
425 KOG1534|consensus 80.4 2.9 6.2E-05 26.9 3.2 68 3-71 101-178 (273)
426 cd04170 EF-G_bact Elongation f 80.3 3 6.5E-05 27.0 3.4 22 90-111 242-263 (268)
427 TIGR01287 nifH nitrogenase iro 80.3 13 0.00029 24.1 9.2 64 2-66 118-183 (275)
428 PRK13507 formate--tetrahydrofo 80.2 14 0.00029 27.2 6.7 52 56-109 400-453 (587)
429 COG4359 Uncharacterized conser 78.6 5.1 0.00011 25.1 3.8 35 77-111 78-112 (220)
430 COG0012 Predicted GTPase, prob 76.6 3.8 8.3E-05 28.2 3.1 33 2-34 69-108 (372)
431 TIGR03453 partition_RepA plasm 76.5 22 0.00048 24.5 8.3 32 2-35 237-268 (387)
432 TIGR00092 GTP-binding protein 75.2 13 0.00028 25.8 5.3 33 2-34 69-108 (368)
433 COG5019 CDC3 Septin family pro 74.6 26 0.00056 24.4 7.1 65 23-92 133-199 (373)
434 PRK06731 flhF flagellar biosyn 72.9 24 0.00052 23.3 8.4 84 2-96 157-246 (270)
435 KOG2052|consensus 72.4 7.1 0.00015 27.8 3.6 46 1-46 212-257 (513)
436 PRK14722 flhF flagellar biosyn 72.0 30 0.00066 24.0 9.7 92 2-97 218-317 (374)
437 PRK05703 flhF flagellar biosyn 71.4 33 0.00072 24.2 9.1 85 2-98 302-394 (424)
438 PRK12726 flagellar biosynthesi 71.4 33 0.00071 24.2 8.1 86 2-98 288-379 (407)
439 PRK13869 plasmid-partitioning 71.4 32 0.0007 24.0 8.1 66 2-70 254-327 (405)
440 PRK13506 formate--tetrahydrofo 71.2 32 0.00069 25.4 6.6 52 56-109 392-446 (578)
441 PLN02759 Formate--tetrahydrofo 70.8 28 0.0006 25.9 6.3 52 56-109 449-503 (637)
442 TIGR03815 CpaE_hom_Actino heli 69.9 30 0.00065 23.1 7.1 47 2-51 207-253 (322)
443 cd02035 ArsA ArsA ATPase funct 69.9 24 0.00053 22.1 6.7 65 2-70 116-183 (217)
444 PRK11670 antiporter inner memb 69.5 34 0.00074 23.6 10.1 64 2-70 218-282 (369)
445 cd04168 TetM_like Tet(M)-like 69.5 12 0.00026 24.0 4.0 23 89-111 210-232 (237)
446 PRK13705 plasmid-partitioning 69.3 35 0.00077 23.7 8.3 66 2-70 237-307 (388)
447 PF14784 ECIST_Cterm: C-termin 69.3 15 0.00032 21.4 4.0 41 22-62 82-123 (126)
448 TIGR03488 cas_Cas5p CRISPR-ass 68.9 4.1 8.9E-05 24.9 1.7 82 4-98 107-190 (237)
449 COG0541 Ffh Signal recognition 68.4 40 0.00086 24.1 6.5 35 2-36 185-225 (451)
450 PF13653 GDPD_2: Glycerophosph 68.3 6.7 0.00015 16.6 1.9 24 2-28 2-25 (30)
451 KOG2655|consensus 67.6 22 0.00048 24.6 5.1 43 23-72 129-173 (366)
452 cd01886 EF-G Elongation factor 66.5 13 0.00028 24.4 3.8 23 89-111 243-265 (270)
453 PRK11889 flhF flagellar biosyn 66.4 45 0.00097 23.8 8.8 85 2-97 323-413 (436)
454 PRK13230 nitrogenase reductase 65.7 35 0.00075 22.3 8.6 49 2-51 119-168 (279)
455 TIGR01005 eps_transp_fam exopo 64.7 47 0.001 25.2 6.8 64 2-70 658-721 (754)
456 PRK14723 flhF flagellar biosyn 64.4 64 0.0014 24.9 8.9 88 2-98 266-360 (767)
457 COG2179 Predicted hydrolase of 64.3 31 0.00068 21.2 5.9 59 22-93 26-89 (175)
458 KOG1491|consensus 62.8 9.8 0.00021 26.2 2.7 33 2-34 86-125 (391)
459 PF11071 DUF2872: Protein of u 61.9 26 0.00057 20.6 4.0 41 17-64 66-107 (141)
460 PRK13556 azoreductase; Provisi 60.7 24 0.00053 22.0 4.2 46 20-65 86-143 (208)
461 PRK13233 nifH nitrogenase redu 60.6 44 0.00095 21.7 8.6 65 2-67 121-187 (275)
462 cd02033 BchX Chlorophyllide re 60.6 51 0.0011 22.5 8.7 80 2-92 150-235 (329)
463 cd04169 RF3 RF3 subfamily. Pe 60.4 5.9 0.00013 25.9 1.4 23 89-111 240-262 (267)
464 PRK00741 prfC peptide chain re 59.5 6.9 0.00015 28.3 1.8 23 89-111 249-271 (526)
465 PF05014 Nuc_deoxyrib_tr: Nucl 58.7 30 0.00065 19.2 5.0 44 20-69 58-101 (113)
466 KOG1486|consensus 58.1 54 0.0012 22.0 5.4 37 2-38 111-154 (364)
467 TIGR00503 prfC peptide chain r 56.2 8.6 0.00019 27.8 1.8 23 89-111 250-272 (527)
468 TIGR03646 YtoQ_fam YtoQ family 56.1 40 0.00088 19.9 4.2 41 17-64 69-110 (144)
469 KOG2743|consensus 56.0 14 0.0003 25.2 2.5 32 4-35 150-189 (391)
470 PF00205 TPP_enzyme_M: Thiamin 55.3 37 0.0008 19.4 4.1 38 56-97 11-48 (137)
471 TIGR03566 FMN_reduc_MsuE FMN r 55.2 26 0.00056 21.1 3.6 49 17-66 62-110 (174)
472 PF12098 DUF3574: Protein of u 55.1 18 0.0004 20.2 2.6 32 2-33 38-69 (104)
473 TIGR02475 CobW cobalamin biosy 55.1 65 0.0014 22.0 8.6 32 4-35 97-135 (341)
474 KOG0052|consensus 54.7 5.9 0.00013 27.5 0.7 68 2-71 84-156 (391)
475 KOG1249|consensus 54.6 30 0.00066 25.3 4.1 84 20-111 107-208 (572)
476 PRK10037 cell division protein 54.1 56 0.0012 20.9 7.8 31 2-34 120-150 (250)
477 COG1512 Beta-propeller domains 54.0 60 0.0013 21.6 5.2 48 22-69 62-110 (271)
478 PRK13555 azoreductase; Provisi 53.6 51 0.0011 20.8 4.7 47 20-66 86-144 (208)
479 KOG1432|consensus 53.4 74 0.0016 22.1 6.1 64 21-88 98-163 (379)
480 PF03709 OKR_DC_1_N: Orn/Lys/A 53.2 40 0.00086 18.9 6.0 43 22-67 35-77 (115)
481 COG0552 FtsY Signal recognitio 52.3 76 0.0016 21.9 7.4 85 2-98 224-321 (340)
482 PRK14721 flhF flagellar biosyn 51.6 85 0.0018 22.3 7.9 84 2-97 272-362 (420)
483 COG1358 RPL8A Ribosomal protei 51.1 15 0.00032 21.1 1.9 41 23-70 43-83 (116)
484 COG4502 5'(3')-deoxyribonucleo 50.6 54 0.0012 19.7 4.5 44 22-67 82-125 (180)
485 TIGR00315 cdhB CO dehydrogenas 50.3 57 0.0012 19.9 4.6 36 56-95 27-62 (162)
486 KOG2733|consensus 49.7 81 0.0018 22.2 5.4 20 25-44 63-82 (423)
487 PRK13235 nifH nitrogenase redu 49.7 70 0.0015 20.8 9.3 65 2-67 120-186 (274)
488 COG1419 FlhF Flagellar GTP-bin 49.0 95 0.0021 22.0 8.9 83 2-95 284-372 (407)
489 cd01983 Fer4_NifH The Fer4_Nif 48.3 38 0.00082 17.3 6.6 35 2-36 36-71 (99)
490 cd08166 MPP_Cdc1_like_1 unchar 46.4 73 0.0016 20.0 5.3 65 23-87 42-111 (195)
491 TIGR02016 BchX chlorophyllide 46.2 88 0.0019 20.9 8.9 82 2-92 125-210 (296)
492 KOG1533|consensus 46.0 38 0.00083 22.3 3.3 66 2-70 99-176 (290)
493 PF02603 Hpr_kinase_N: HPr Ser 45.6 26 0.00056 20.2 2.4 36 56-98 80-115 (127)
494 COG4108 PrfC Peptide chain rel 45.1 13 0.00028 26.6 1.2 22 90-111 252-273 (528)
495 cd07393 MPP_DR1119 Deinococcus 44.6 73 0.0016 20.2 4.5 20 20-39 38-57 (232)
496 PRK12724 flagellar biosynthesi 44.4 1.2E+02 0.0025 21.8 7.7 85 2-98 302-396 (432)
497 PRK00170 azoreductase; Reviewe 44.4 49 0.0011 20.2 3.7 47 20-66 83-141 (201)
498 COG0252 AnsB L-asparaginase/ar 44.1 66 0.0014 22.3 4.4 40 24-70 101-140 (351)
499 PRK13695 putative NTPase; Prov 43.4 72 0.0015 19.1 7.0 68 20-99 93-161 (174)
500 PF07764 Omega_Repress: Omega 43.0 10 0.00023 19.0 0.4 15 95-109 44-58 (71)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.1e-34 Score=173.28 Aligned_cols=109 Identities=40% Similarity=0.625 Sum_probs=103.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++|+|||+||+||+++..+||++|+|+|+|||+++..||+++..|+.++.++.. .++|.++||||+|+.+.+.++.+++
T Consensus 59 KlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a 137 (205)
T KOG0084|consen 59 KLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEA 137 (205)
T ss_pred EEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHH
Confidence 589999999999999999999999999999999999999999999999998763 5689999999999999999999999
Q ss_pred HHHHHHhCCc-EEEeecCCCCChhHHhhhhc
Q psy785 81 ASLARAFACT-FLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~ 110 (112)
++++.+++++ ++|+||+++.||++.|..+.
T Consensus 138 ~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la 168 (205)
T KOG0084|consen 138 QEFADELGIPIFLETSAKDSTNVEDAFLTLA 168 (205)
T ss_pred HHHHHhcCCcceeecccCCccCHHHHHHHHH
Confidence 9999999998 99999999999999998875
No 2
>KOG0078|consensus
Probab=100.00 E-value=1.8e-34 Score=174.21 Aligned_cols=109 Identities=41% Similarity=0.649 Sum_probs=104.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++|+|||+||++|..+.++||++|+++++|||+++..||+++..|+..+.++.. .+.|.++||||+|+...++++.+..
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~-~~v~~~LvGNK~D~~~~R~V~~e~g 140 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS-DDVVKILVGNKCDLEEKRQVSKERG 140 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC-CCCcEEEeeccccccccccccHHHH
Confidence 479999999999999999999999999999999999999999999999999864 4899999999999999899999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
++++.++|++++|+||++|.||++.|..|+
T Consensus 141 e~lA~e~G~~F~EtSAk~~~NI~eaF~~La 170 (207)
T KOG0078|consen 141 EALAREYGIKFFETSAKTNFNIEEAFLSLA 170 (207)
T ss_pred HHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence 999999999999999999999999998875
No 3
>KOG0092|consensus
Probab=100.00 E-value=1.8e-34 Score=171.85 Aligned_cols=110 Identities=31% Similarity=0.470 Sum_probs=103.6
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+|+||||+|||+|.++.+.||++|+++|+|||+++.+||..++.|+.++.+... +++-+.++|||+|+.+.+.+..++.
T Consensus 55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea 133 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEA 133 (200)
T ss_pred EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHH
Confidence 478999999999999999999999999999999999999999999999988764 6778888999999999899999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++.+.|..++|+||++|.||+++|..+.+
T Consensus 134 ~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 134 QAYAESQGLLFFETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred HHHHHhcCCEEEEEecccccCHHHHHHHHHH
Confidence 9999999999999999999999999998865
No 4
>KOG0094|consensus
Probab=100.00 E-value=4e-33 Score=166.51 Aligned_cols=109 Identities=36% Similarity=0.545 Sum_probs=104.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
||+|||||||+|+.+.+.|++++.++|+|||+++..||++...|+..+.+..+..+.-+++||||.||.+.++++.++..
T Consensus 73 LQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~ 152 (221)
T KOG0094|consen 73 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE 152 (221)
T ss_pred EEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH
Confidence 79999999999999999999999999999999999999999999999999887777888999999999999999999999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..+++++..++++||+.|+||.++|.++.
T Consensus 153 ~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 153 RKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred HHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 99999999999999999999999999865
No 5
>KOG0093|consensus
Probab=100.00 E-value=1.3e-32 Score=157.99 Aligned_cols=110 Identities=40% Similarity=0.655 Sum_probs=103.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++|+|||+|||+|+.+...+|++++++|+|||+++++||..+.+|...+..++. .+.|+|+++||+|+.+++.++.+..
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw-~naqvilvgnKCDmd~eRvis~e~g 149 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW-DNAQVILVGNKCDMDSERVISHERG 149 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec-cCceEEEEecccCCccceeeeHHHH
Confidence 479999999999999999999999999999999999999999999999877643 5799999999999999999999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.++.++|+++||+||+.+.||+++|+++++
T Consensus 150 ~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 150 RQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred HHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 6
>KOG0098|consensus
Probab=100.00 E-value=1.7e-32 Score=162.77 Aligned_cols=109 Identities=38% Similarity=0.557 Sum_probs=103.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||+||++|.+..++||+++-++++|||+++.+||+.+..|+.++.++. .+++.++++|||+|+...+.++.++.
T Consensus 56 KlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEG 134 (216)
T KOG0098|consen 56 KLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEG 134 (216)
T ss_pred EEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999985 36789999999999999999999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.|++++|+.+.++||+++.||+|+|....
T Consensus 135 eaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 135 EAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred HHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999998653
No 7
>KOG0394|consensus
Probab=100.00 E-value=2.2e-32 Score=161.92 Aligned_cols=110 Identities=27% Similarity=0.485 Sum_probs=100.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCC--cccc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEE--ERVV 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~--~~~~ 75 (112)
++++|||+||++|+++...+|+++|+|+++||+++++||+.+..|..++...... ...|+|++|||+|+.+ ++.+
T Consensus 59 tlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V 138 (210)
T KOG0394|consen 59 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV 138 (210)
T ss_pred EEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee
Confidence 5899999999999999999999999999999999999999999999999887764 4589999999999975 3789
Q ss_pred cHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhc
Q psy785 76 GKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 76 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.+.++.||...| +|+||+|||.+.||.+.|+.+.
T Consensus 139 S~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia 174 (210)
T KOG0394|consen 139 SEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIA 174 (210)
T ss_pred eHHHHHHHHHhcCCceeEEecccccccHHHHHHHHH
Confidence 9999999999875 7999999999999999998764
No 8
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=5.3e-31 Score=161.08 Aligned_cols=108 Identities=31% Similarity=0.426 Sum_probs=100.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|+++|..+++.+++++|++++|||++++.||+.+..|+.++.++. ++.|+++||||.|+...+.++.++++
T Consensus 57 l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~ 134 (189)
T cd04121 57 LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQ 134 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHH
Confidence 7899999999999999999999999999999999999999999999997754 57999999999999876778888899
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..++++++|||++|.||+++|++++.
T Consensus 135 ~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 135 AYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999863
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=9.5e-31 Score=161.34 Aligned_cols=110 Identities=36% Similarity=0.556 Sum_probs=99.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
.+++|||+|+++|..+++.+++++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.+...+.
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~ 128 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQG 128 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHH
Confidence 36899999999999999999999999999999999999999999999876643 35799999999999987777888888
Q ss_pred HHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAF-ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++++. ++.+++|||++|.||+++|+++++
T Consensus 129 ~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 129 EKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 8888775 789999999999999999999864
No 10
>KOG0079|consensus
Probab=99.97 E-value=1.6e-31 Score=153.77 Aligned_cols=109 Identities=38% Similarity=0.552 Sum_probs=103.1
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++||||+|||+|+.+...+|++.+++++|||+++.+||.++.+|++++...+ ...|-++||||.|.++++.+..+++
T Consensus 58 kLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dA 135 (198)
T KOG0079|consen 58 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDA 135 (198)
T ss_pred EEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHH
Confidence 47999999999999999999999999999999999999999999999998876 4699999999999999999999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.|+...|+++||+||+.+.|++.+|..+..
T Consensus 136 r~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 136 RAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred HHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 9999999999999999999999999987754
No 11
>KOG0087|consensus
Probab=99.97 E-value=4.5e-31 Score=159.31 Aligned_cols=108 Identities=34% Similarity=0.487 Sum_probs=102.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
.+||||+||++|+++...||++|.++++|||++...+|+.+.+|+.++..+.+ +++++++||||+||...+.++.++..
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k 143 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGK 143 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhH
Confidence 58999999999999999999999999999999999999999999999999864 58999999999999888889999999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.++++.++.++++||..+.||+++|+.++
T Consensus 144 ~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 144 AFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred hHHHhcCceEEEecccccccHHHHHHHHH
Confidence 99999999999999999999999998765
No 12
>KOG0081|consensus
Probab=99.97 E-value=8.4e-31 Score=152.46 Aligned_cols=111 Identities=32% Similarity=0.557 Sum_probs=104.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||+|||+|+++...++++|.+++++||.+++.||-++++|+..+..+.-..+..++++|||+|+.+.+.++..++
T Consensus 68 hLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa 147 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQA 147 (219)
T ss_pred EEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHH
Confidence 58999999999999999999999999999999999999999999999998887667778999999999999999999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++.++++|+||+||-+|.||++..+.|.+
T Consensus 148 ~~La~kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred HHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence 9999999999999999999999998887653
No 13
>KOG0088|consensus
Probab=99.97 E-value=3.6e-31 Score=153.90 Aligned_cols=108 Identities=33% Similarity=0.561 Sum_probs=101.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.||||+||++|.++.+.||++.+++++|||+++.+||+.+++|..++....+ ..+-.++||||+|+.+++.++.++++
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe 142 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAE 142 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHH
Confidence 68999999999999999999999999999999999999999999999987543 56889999999999999999999999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+++.-|..++++||+.+.||.++|+.|.
T Consensus 143 ~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 143 AYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred HHHHhhchhheecccccccCHHHHHHHHH
Confidence 99999999999999999999999999764
No 14
>KOG0080|consensus
Probab=99.97 E-value=3.8e-31 Score=153.97 Aligned_cols=111 Identities=40% Similarity=0.598 Sum_probs=105.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++-||||+|||+|+.+.++||++|.++|+|||++..++|.++..|+.++.-++.-+++-.++||||+|..+++.++.++.
T Consensus 61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG 140 (209)
T KOG0080|consen 61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEG 140 (209)
T ss_pred EEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHH
Confidence 46799999999999999999999999999999999999999999999999888777889999999999887899999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++++++++-++|+||++..||..+|+.+++
T Consensus 141 ~kfAr~h~~LFiE~SAkt~~~V~~~Feelve 171 (209)
T KOG0080|consen 141 LKFARKHRCLFIECSAKTRENVQCCFEELVE 171 (209)
T ss_pred HHHHHhhCcEEEEcchhhhccHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 15
>KOG0091|consensus
Probab=99.97 E-value=3e-30 Score=150.64 Aligned_cols=111 Identities=32% Similarity=0.497 Sum_probs=102.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-CCcEEEEeeCCCCCCcccccHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTD-DVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
++++|||+||++|+++..+||+|.-+++++||+++..||+.+.+|..+..-+...+ .+-+.+||.|.|+...++++.++
T Consensus 59 klqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE 138 (213)
T KOG0091|consen 59 KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE 138 (213)
T ss_pred EEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH
Confidence 58999999999999999999999999999999999999999999999988776644 45577899999999999999999
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++++...|+.++|+||++|.||++.|+-+.+
T Consensus 139 aEklAa~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 139 AEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence 99999999999999999999999999987653
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=9.4e-30 Score=154.82 Aligned_cols=108 Identities=24% Similarity=0.404 Sum_probs=97.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE--------- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------- 71 (112)
+++|||+|+++|..+++.+++++|++++|||++++.||+.+ ..|+..+.+.. ++.|+++||||.|+.+
T Consensus 55 l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~ 132 (182)
T cd04172 55 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELS 132 (182)
T ss_pred EEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHH
Confidence 78999999999999999999999999999999999999997 79999998764 5689999999999864
Q ss_pred ---cccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785 72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND 111 (112)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~ 111 (112)
.+.++.+++++++++.++ +++||||++|.| |+++|+.++.
T Consensus 133 ~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 133 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 245788899999999996 999999999998 9999998753
No 17
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=1.4e-29 Score=153.28 Aligned_cols=110 Identities=35% Similarity=0.499 Sum_probs=98.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.||||||++++..++..+++++|++++|||++++.+++.+..|+..+.+... .+.|+++|+||+|+.+.+.+...+.
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~piilVgNK~DL~~~~~v~~~e~ 108 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEG 108 (176)
T ss_pred EEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccCCCHHHH
Confidence 378999999999999999999999999999999999999999999999877542 5689999999999976666777788
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..+++.++++||++|.||+++|+++++
T Consensus 109 ~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~ 139 (176)
T PTZ00099 109 MQKAQEYNTMFHETSAKAGHNIKVLFKKIAA 139 (176)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 8888888899999999999999999999864
No 18
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=1e-29 Score=153.87 Aligned_cols=109 Identities=25% Similarity=0.503 Sum_probs=97.6
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc------
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEER------ 73 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------ 73 (112)
.+++|||+|+++|..++..++++++++++|||+++++||+.+ ..|+..+.+.. .+.|+++||||+|+.+.+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~ 127 (176)
T cd04133 50 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADH 127 (176)
T ss_pred EEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhc
Confidence 378999999999999999999999999999999999999998 68999987764 469999999999996532
Q ss_pred ----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 ----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++.++..++++..+. +++||||++|.||+++|+.+++
T Consensus 128 ~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 128 PGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence 4778889999999988 6999999999999999998864
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=2.5e-29 Score=151.76 Aligned_cols=110 Identities=48% Similarity=0.773 Sum_probs=100.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++|..++..+++++|++++|||++++.|++.+..|...+.+.....++|+++|+||+|+.+.+.++..+..
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~ 131 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR 131 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH
Confidence 68999999999999999999999999999999999999999999888877654467999999999999776778888888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..++++++|||++|.||+++|++++.
T Consensus 132 ~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 132 NLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred HHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 899889999999999999999999999864
No 20
>KOG0083|consensus
Probab=99.96 E-value=1.7e-30 Score=147.41 Aligned_cols=110 Identities=34% Similarity=0.614 Sum_probs=101.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++|+|||+||++|++....||+++|+++++||+++..||++++.|+.+|.++.. ..+.++++|||+|+..++.+..++.
T Consensus 48 klqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg 126 (192)
T KOG0083|consen 48 KLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDG 126 (192)
T ss_pred EEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchH
Confidence 479999999999999999999999999999999999999999999999988753 4678899999999977788888899
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++++.+++|+.++||++|.|++..|..+.+
T Consensus 127 ~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 127 EKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred HHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 9999999999999999999999999987653
No 21
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=4.7e-29 Score=151.17 Aligned_cols=110 Identities=32% Similarity=0.549 Sum_probs=100.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||+++++++..+..|+..+.......+.|+++|+||+|+.+.+.+..++..
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~ 144 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK 144 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence 68999999999999999999999999999999999999999999999987654467899999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 145 ~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 145 ALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999864
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=8.5e-29 Score=151.66 Aligned_cols=108 Identities=27% Similarity=0.447 Sum_probs=94.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||+|+++|..+++.+++++|++++|||+++++||+.+. .|...+.... .++|+++||||.|+.+.+
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~ 130 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLK 130 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHh
Confidence 689999999999999999999999999999999999999996 5888776643 579999999999996432
Q ss_pred -----cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 74 -----VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..++..+++++.+ ++++++||++|.||+++|+++++
T Consensus 131 ~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 131 EQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred hccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 355677888888888 59999999999999999999864
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=6.2e-29 Score=150.81 Aligned_cols=108 Identities=23% Similarity=0.391 Sum_probs=96.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEE--------- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------- 71 (112)
+++|||+|+++|..+++.+++++|++++|||+++++||+.+ ..|+..+.+.. ++.|+++||||.|+.+
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~ 128 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELS 128 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHH
Confidence 78999999999999999999999999999999999999996 78999998764 5789999999999864
Q ss_pred ---cccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785 72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND 111 (112)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~ 111 (112)
.+.++.+++.++++++++ +++||||++|.| |+++|..++.
T Consensus 129 ~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 129 HQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 235778899999999997 899999999995 9999998753
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.1e-28 Score=154.73 Aligned_cols=108 Identities=23% Similarity=0.413 Sum_probs=96.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCC--------
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEE-------- 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~-------- 71 (112)
.++||||+|+++|..+++.+++++|++++|||+++++||+. +..|+..+.+.. ++.|+++||||+|+.+
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l 139 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMEL 139 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhh
Confidence 37899999999999999999999999999999999999998 488999998754 4689999999999864
Q ss_pred ----cccccHHHHHHHHHHhCC-cEEEeecCCCC-ChhHHhhhhc
Q psy785 72 ----ERVVGKEQGASLARAFAC-TFLETSAKAKV-NSWLCVECTN 110 (112)
Q Consensus 72 ----~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~v~~~~~~l~ 110 (112)
.+.++.+++++++++.++ .+++|||++|. ||+++|+.++
T Consensus 140 ~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~ 184 (232)
T cd04174 140 SNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSAS 184 (232)
T ss_pred ccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHH
Confidence 256778899999999998 69999999998 8999999875
No 25
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=1.7e-28 Score=146.34 Aligned_cols=110 Identities=73% Similarity=1.077 Sum_probs=99.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++|..+++.+++++|++++|||++++.+++.+..|+..+.+.....++|+++++||+|+.+.+.+..+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 130 (163)
T cd04136 51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQ 130 (163)
T ss_pred EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHH
Confidence 67999999999999999999999999999999999999999999999987655567999999999999766666667777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++.++.+++++||++|.|+.++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 131 ALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 788888889999999999999999999875
No 26
>KOG0086|consensus
Probab=99.96 E-value=3.1e-29 Score=145.16 Aligned_cols=108 Identities=32% Similarity=0.444 Sum_probs=100.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++||||+||++|++..+.||++|-+.++|||+++.++|+.+..|+..+.... .+++-++++|||.|+.+.++++..++
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEA 137 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEA 137 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHH
Confidence 58999999999999999999999999999999999999999999999987653 46788999999999999999999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
..++++..+.+.++||++|.||+|.|-..
T Consensus 138 s~FaqEnel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 138 SRFAQENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred HhhhcccceeeeeecccccccHHHHHHHH
Confidence 99999999999999999999999999764
No 27
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=2e-28 Score=146.50 Aligned_cols=110 Identities=80% Similarity=1.129 Sum_probs=99.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.......+.|+++++||+|+.+.+..+.....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 130 (164)
T cd04175 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 130 (164)
T ss_pred EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH
Confidence 67999999999999999999999999999999999999999999999987655578999999999999876666667777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 131 NLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred HHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999864
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=2e-28 Score=146.82 Aligned_cols=109 Identities=36% Similarity=0.466 Sum_probs=98.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|||++++.+++.+..|+..+.... ....|+++|+||+|+.+.+.++.++..
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~ 131 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAK 131 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHH
Confidence 6899999999999999999999999999999999999999999998886653 256899999999999877777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|+.++|..+..
T Consensus 132 ~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 132 QFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 899888999999999999999999998763
No 29
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.5e-28 Score=150.93 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=93.5
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC--------
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE-------- 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~-------- 71 (112)
.+++|||||++++ +.+.+++++|++++|||++++.|++.+. .|+..+.... .+.|+++||||+|+..
T Consensus 67 ~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~ 142 (195)
T cd01873 67 SLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNR 142 (195)
T ss_pred EEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhh
Confidence 3789999999863 4567899999999999999999999996 5998887654 4689999999999863
Q ss_pred -----------cccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 -----------ERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 -----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.++.+++++++++++++++||||++|.||+++|+.++.
T Consensus 143 ~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 143 ARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 3567888999999999999999999999999999999875
No 30
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=4.5e-28 Score=148.31 Aligned_cols=110 Identities=54% Similarity=0.851 Sum_probs=98.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+...+.+....
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~ 128 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE 128 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH
Confidence 68999999999999999999999999999999999999999999998876543 2568999999999997767777777
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++++.++++++++||++|.|++++|+++.+
T Consensus 129 ~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 129 GAALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred HHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 77888888999999999999999999999864
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=6.3e-28 Score=144.13 Aligned_cols=110 Identities=55% Similarity=0.857 Sum_probs=98.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+.+.....++|+++++||+|+.+.+.+...+..
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~ 130 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGR 130 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHH
Confidence 67999999999999999999999999999999999999999999999887654467999999999999765666666677
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|+.++|++++.
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 131 ALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred HHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 788778889999999999999999999874
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6.6e-28 Score=148.70 Aligned_cols=110 Identities=27% Similarity=0.442 Sum_probs=98.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+++|||||+++|..+++.++++++++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+.+....+
T Consensus 52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 131 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE 131 (201)
T ss_pred EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH
Confidence 68999999999999999999999999999999999999999999988865432 256899999999999765667788
Q ss_pred HHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++++..+ .+++++||++|.|++++|+++++
T Consensus 132 ~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 132 QMDQFCKENGFIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred HHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 8889999888 59999999999999999999874
No 33
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=4.8e-28 Score=149.16 Aligned_cols=106 Identities=29% Similarity=0.501 Sum_probs=93.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||+|+++|..+++.++++++++++|||+++..+++.+..|+..+.+.. .++|+++||||+|+.. +.+..+. .
T Consensus 46 l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~ 121 (200)
T smart00176 46 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-I 121 (200)
T ss_pred EEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-H
Confidence 6899999999999999999999999999999999999999999999998764 5799999999999864 3333333 4
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..++++++|||++|.||.++|++++.
T Consensus 122 ~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 122 TFHRKKNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 677778899999999999999999999874
No 34
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=4.9e-28 Score=146.53 Aligned_cols=108 Identities=25% Similarity=0.428 Sum_probs=94.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||+|+++|..++..+++++|++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~ 128 (175)
T cd01874 51 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLA 128 (175)
T ss_pred EEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhh
Confidence 689999999999999999999999999999999999999996 5988887653 46899999999998543
Q ss_pred ----ccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.++.+++++++++.+ +.++++||++|.|++++|+.++.
T Consensus 129 ~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 129 KNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 4566677788888887 69999999999999999998864
No 35
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=146.08 Aligned_cols=110 Identities=56% Similarity=0.889 Sum_probs=98.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++|..++..+++++|++++|||++++++++.+..|+..+.+.....+.|+++++||+|+.+.+.+...+..
T Consensus 55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~ 134 (189)
T PTZ00369 55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ 134 (189)
T ss_pred EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence 67999999999999999999999999999999999999999999999887655568999999999999766666677777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++..++++++++||++|.|+.++|+++++
T Consensus 135 ~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 135 ELAKSFGIPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred HHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999864
No 36
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=1.4e-27 Score=142.72 Aligned_cols=109 Identities=31% Similarity=0.547 Sum_probs=99.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..+++++|++++|||++++++++.+..|+..+.... ..+.|+++|+||.|+.+.+.+..++..
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~ 129 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGN 129 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999887653 246899999999999776777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||++|.|++++|++|++
T Consensus 130 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 130 KLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 899888999999999999999999999875
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=1.5e-27 Score=148.49 Aligned_cols=110 Identities=29% Similarity=0.362 Sum_probs=99.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++.+..++..+++++|++++|||++++++++.+..|+..+.+.... .+.|+++|+||+|+.+.+.+..+.
T Consensus 52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~ 131 (215)
T cd04109 52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDK 131 (215)
T ss_pred EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHH
Confidence 689999999999999999999999999999999999999999999999876532 356899999999997667777788
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++.++++++++||++|.|++++|++++.
T Consensus 132 ~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 132 HARFAQANGMESCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 88899888999999999999999999998864
No 38
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=1.9e-27 Score=148.24 Aligned_cols=109 Identities=29% Similarity=0.409 Sum_probs=96.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC----------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE---------- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~---------- 71 (112)
+.+|||||+++|..++..+++++|++++|||++++.+|+.+..|+..+.+.. ..+.|+++|+||+|+.+
T Consensus 46 l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~ 124 (220)
T cd04126 46 ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKD 124 (220)
T ss_pred EEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccccccccc
Confidence 6899999999999999999999999999999999999999998888776642 35689999999999965
Q ss_pred ---------cccccHHHHHHHHHHhC--------------CcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ---------ERVVGKEQGASLARAFA--------------CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ---------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+..+++..++++.+ ++++||||++|.||+++|..+++
T Consensus 125 ~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~ 187 (220)
T cd04126 125 AGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN 187 (220)
T ss_pred ccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence 46677888999998876 68999999999999999998864
No 39
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.95 E-value=2.7e-27 Score=141.87 Aligned_cols=109 Identities=41% Similarity=0.679 Sum_probs=98.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++++++.+..|+..+.+.. ....|+++++||+|+.+.+....+...
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~ 130 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGR 130 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987653 246899999999999876666777778
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++..++++++++||++|.|+.++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 131 QLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999864
No 40
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.3e-27 Score=147.31 Aligned_cols=110 Identities=33% Similarity=0.543 Sum_probs=100.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.+.......|+++++||.|+.+.+.+..++..
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~ 133 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE 133 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999987655456789999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+.+++
T Consensus 134 ~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 134 KLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred HHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 899989999999999999999999999864
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=1.7e-27 Score=144.07 Aligned_cols=108 Identities=23% Similarity=0.425 Sum_probs=95.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||+++|..+++.+++++|++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~ 128 (174)
T cd01871 51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK 128 (174)
T ss_pred EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHh
Confidence 689999999999999999999999999999999999999985 6888876643 57999999999999542
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.++.+++.+++++++. ++++|||++|.|++++|+.++.
T Consensus 129 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 129 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 24677888889998885 9999999999999999998864
No 42
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=2.5e-27 Score=141.28 Aligned_cols=108 Identities=32% Similarity=0.503 Sum_probs=98.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++++++.+..|+..+.+.. .++|+++|+||+|+.....+..++..
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~ 130 (162)
T cd04106 53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAE 130 (162)
T ss_pred EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHH
Confidence 7899999999999999999999999999999999999999999999887643 57999999999999776677777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 131 ALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999875
No 43
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=3e-27 Score=141.09 Aligned_cols=110 Identities=48% Similarity=0.817 Sum_probs=98.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++++||+|+...+.+..+...
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~ 131 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ 131 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH
Confidence 67999999999999999999999999999999999999999999998887654467899999999999766666666777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|++++.
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 132 ELARKLKIPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred HHHHHcCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999864
No 44
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=3.5e-27 Score=140.94 Aligned_cols=110 Identities=61% Similarity=0.965 Sum_probs=99.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++++++.+..|...+.+.....+.|+++++||+|+.+.+....+...
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~ 129 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGK 129 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHH
Confidence 67999999999999999999999999999999999999999999988877655567899999999999766666677777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+.+++++||++|.|++++|+++++
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 130 ELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred HHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999874
No 45
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=5.2e-27 Score=140.61 Aligned_cols=110 Identities=39% Similarity=0.672 Sum_probs=97.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++++..++..++++++++++|||++++.+++.+..|+..+.+.... .++|+++|+||+|+.+.+.+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 130 (165)
T cd04140 51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE 130 (165)
T ss_pred EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH
Confidence 689999999999999999999999999999999999999999998887765432 578999999999997656666677
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++..++++++++||++|.|++++|+++++
T Consensus 131 ~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 131 GAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred HHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 77788888899999999999999999999875
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.95 E-value=4.1e-27 Score=141.03 Aligned_cols=109 Identities=37% Similarity=0.600 Sum_probs=98.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++++++.+..|+..+.+.. ..+.|+++++||+|+.+.+.+..++..
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~ 131 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQ 131 (166)
T ss_pred EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 256899999999999776677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||++|.|++++|+.+.+
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 132 EFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred HHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 47
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.95 E-value=7.4e-27 Score=140.18 Aligned_cols=109 Identities=42% Similarity=0.672 Sum_probs=98.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.+.. ..+.|+++++||+|+.+.+....++..
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 132 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGE 132 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 356899999999999876666777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++.++++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 133 ALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999864
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.95 E-value=6.6e-27 Score=140.99 Aligned_cols=110 Identities=25% Similarity=0.368 Sum_probs=94.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~ 79 (112)
+++|||||+++|..++..+++++|++++|||++++.+++.+..|+..+.+.......|+++|+||+|+.+... ...+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~ 130 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQD 130 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHH
Confidence 7899999999999999999999999999999999999999999999987654444578999999999865333 23556
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++.+++.+++++||++|.|++++|+.+++
T Consensus 131 ~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 131 AIKLAAEMQAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 66777778889999999999999999998864
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.95 E-value=9.5e-27 Score=139.17 Aligned_cols=110 Identities=23% Similarity=0.407 Sum_probs=98.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC----CCCcEEEEeeCCCCCCcccccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT----DDVPMVLVGNKCDLEEERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~D~~~~~~~~~ 77 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.... .+.|+++|+||+|+.++.....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 130 (168)
T cd04119 51 VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE 130 (168)
T ss_pred EEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH
Confidence 689999999999999999999999999999999999999999999999876543 5689999999999976566677
Q ss_pred HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 78 EQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++.+.++++.+++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 131 DEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 7777888888899999999999999999999864
No 50
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=3.9e-27 Score=147.00 Aligned_cols=107 Identities=31% Similarity=0.448 Sum_probs=93.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||+|+++|..++..++++++++++|||++++.+++.+..|+..+.+.. .++|+++||||+|+.+ +.+..+..
T Consensus 63 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~ 139 (219)
T PLN03071 63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV 139 (219)
T ss_pred EEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH
Confidence 37899999999999999999999999999999999999999999999998754 5799999999999864 33334444
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..++++++|||++|.|++++|+++++
T Consensus 140 -~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 140 -TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred -HHHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 667777889999999999999999999864
No 51
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=7.2e-27 Score=139.34 Aligned_cols=109 Identities=34% Similarity=0.611 Sum_probs=101.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++||++|+++|..+...+++++|+++++||+++++|++.+..|+..+..... .+.|++++|||.|+.+.+.++.++++
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~ 128 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQ 128 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHH
Confidence 78999999999999999999999999999999999999999999999988764 46899999999999877888899999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++++++.+++++||+++.|+.++|..+++
T Consensus 129 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 129 EFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp HHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998875
No 52
>KOG0095|consensus
Probab=99.95 E-value=6.5e-28 Score=139.26 Aligned_cols=109 Identities=35% Similarity=0.485 Sum_probs=100.1
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||+||++|+++..+||+.|++++++||++...+|+-+..|+.++.++.. ..+--|+||||+|+.++++++.+..
T Consensus 57 klqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qig 135 (213)
T KOG0095|consen 57 KLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIG 135 (213)
T ss_pred EEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHH
Confidence 489999999999999999999999999999999999999999999999998864 3466788999999998889988888
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+++.....+.++++||+...|++.+|..+.
T Consensus 136 eefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 136 EEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred HHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 999988888999999999999999998764
No 53
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=1.7e-26 Score=137.31 Aligned_cols=109 Identities=50% Similarity=0.831 Sum_probs=97.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..++++++++++|+|+++..+++.+..|+..+.+.....+.|+++|+||+|+.+ +.....+..
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~ 129 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQ 129 (162)
T ss_pred EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHH
Confidence 5789999999999999999999999999999999999999999999988776556799999999999865 445566777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++++
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 130 DLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred HHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 788888999999999999999999999864
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=1.5e-26 Score=141.73 Aligned_cols=109 Identities=35% Similarity=0.633 Sum_probs=97.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||++++...+..+++++|++++|+|++++++++.+..|+..+.+.. ..++|+++++||+|+..++.+..++..
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~ 130 (191)
T cd04112 52 LQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE 130 (191)
T ss_pred EEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999988753 246899999999999766666677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++++++++||++|.|++++|+++.+
T Consensus 131 ~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 131 RLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999864
No 55
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=9.8e-27 Score=141.62 Aligned_cols=109 Identities=21% Similarity=0.330 Sum_probs=91.5
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc-----ccc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE-----RVV 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-----~~~ 75 (112)
.+++|||+|+++|..++..+++++|++++|||++++.+++.+..|+..+.+... ...| ++||||+|+... ...
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~ 127 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEE 127 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhh
Confidence 378999999999999999999999999999999999999999999999877542 3456 678999998521 111
Q ss_pred cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++.+++++..+++++++||++|.|++++|+++.+
T Consensus 128 ~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 128 ITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred hHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 234566788888899999999999999999998864
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.95 E-value=2.3e-26 Score=141.70 Aligned_cols=108 Identities=35% Similarity=0.529 Sum_probs=97.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..++++++++++|||++++++++.+..|+..+.... ...|+++|+||+|+.+.+.+...+..
T Consensus 57 l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~ 134 (199)
T cd04110 57 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAY 134 (199)
T ss_pred EEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHH
Confidence 6799999999999999999999999999999999999999999999987653 56899999999999876667777888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||++|.|++++|+++..
T Consensus 135 ~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 135 KFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred HHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 888888999999999999999999999764
No 57
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=1.4e-26 Score=139.60 Aligned_cols=108 Identities=28% Similarity=0.476 Sum_probs=94.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||||+++|..++..+++++|++++|||++++++++.+. .|+..+.+.. .+.|+++|+||+|+.+..
T Consensus 48 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 125 (174)
T smart00174 48 LGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELS 125 (174)
T ss_pred EEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhh
Confidence 689999999999999999999999999999999999999985 5998887753 579999999999986422
Q ss_pred -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++.++..++++..+. +++++||++|.|++++|+.+++
T Consensus 126 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 126 KQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred cccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 2566777888888886 9999999999999999998864
No 58
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=1.1e-26 Score=142.06 Aligned_cols=108 Identities=28% Similarity=0.428 Sum_probs=92.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||+|+++|..+++.++++++++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+...+
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~ 127 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQ 127 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHh
Confidence 689999999999999999999999999999999999999886 5988887653 578999999999996533
Q ss_pred -----cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 74 -----VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..++...++...+ +++++|||++|.|++++|+++++
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 128 RYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred hccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 234555667777766 68999999999999999999864
No 59
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=2.9e-26 Score=137.71 Aligned_cols=110 Identities=57% Similarity=0.903 Sum_probs=98.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++|..+++.++++++++++|+|.+++++++.+..|...+.+.....+.|+++++||+|+.+.+....++..
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~ 130 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGV 130 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHH
Confidence 58999999999999999999999999999999999999999999998887655568999999999999776666677777
Q ss_pred HHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++.++ .+++++||++|.|++++|+++..
T Consensus 131 ~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 131 SLSQQWGNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred HHHHHcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 7777777 79999999999999999999874
No 60
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.94 E-value=1.4e-26 Score=139.37 Aligned_cols=109 Identities=13% Similarity=0.212 Sum_probs=89.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+ .....+..
T Consensus 55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~ 132 (168)
T cd04149 55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQ 132 (168)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHH
Confidence 7899999999999999999999999999999999999998888877776543335689999999999864 23445555
Q ss_pred HHHHH-----hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARA-----FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
++... ..++++++||++|.|+.++|++|.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~~ 168 (168)
T cd04149 133 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168 (168)
T ss_pred HHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhcC
Confidence 54321 23478999999999999999999864
No 61
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=2.5e-26 Score=137.03 Aligned_cols=105 Identities=22% Similarity=0.424 Sum_probs=90.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC--cccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE--ERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~ 79 (112)
+++|||+|++. ..+++++|++++|||+++++||+.+..|+..+.......++|+++||||.|+.. .+.+..++
T Consensus 49 l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~ 123 (158)
T cd04103 49 LLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR 123 (158)
T ss_pred EEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH
Confidence 68999999985 346689999999999999999999999999998876556789999999999852 46677777
Q ss_pred HHHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAF-ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+++++. ++++++|||++|.||+++|+.+++
T Consensus 124 ~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 124 ARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 88888776 589999999999999999999874
No 62
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=3.4e-26 Score=136.66 Aligned_cols=108 Identities=31% Similarity=0.426 Sum_probs=95.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++.+..+++.+++++|++++|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+...+......
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQ 131 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999887754 56899999999999766666666666
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+....+++++++||++|.|++++|+.+++
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 132 AFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred HHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 777777889999999999999999998864
No 63
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.94 E-value=1.9e-26 Score=138.46 Aligned_cols=106 Identities=29% Similarity=0.493 Sum_probs=92.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..++.++|++++|||++++++++.+..|+..+.+... ++|+++|+||+|+.+ +... ....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~-~~~~-~~~~ 126 (166)
T cd00877 51 FNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKD-RKVK-AKQI 126 (166)
T ss_pred EEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhccc-ccCC-HHHH
Confidence 68999999999998999999999999999999999999999999999988653 799999999999973 3332 3344
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|++|++
T Consensus 127 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 127 TFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred HHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 566667789999999999999999999874
No 64
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.94 E-value=4.4e-26 Score=137.04 Aligned_cols=109 Identities=29% Similarity=0.515 Sum_probs=96.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+++|||||++++..++..+++++|++++|||++++++++.+..|...+...... .++|+++++||+|+. .+.+..+
T Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~ 134 (170)
T cd04116 56 LQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTE 134 (170)
T ss_pred EEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHH
Confidence 689999999999999999999999999999999999999999999888765432 468999999999986 3556677
Q ss_pred HHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.++++++++. +++++||++|.|+.++|+.+++
T Consensus 135 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 135 EAQAWCRENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 88889888875 8999999999999999999875
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.94 E-value=4.6e-26 Score=136.89 Aligned_cols=109 Identities=38% Similarity=0.583 Sum_probs=98.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.. .++.|+++++||+|+.+.+..+.++..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~ 133 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGE 133 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 257899999999999866667777888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||+++.|++++|.++.+
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 134 AFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999988764
No 66
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.94 E-value=4.7e-26 Score=136.24 Aligned_cols=109 Identities=31% Similarity=0.459 Sum_probs=98.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..++++++++++|+|++++.+++.+..|+..+.+... .+.|+++|+||.|+...+....++..
T Consensus 54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi~vv~nK~Dl~~~~~~~~~~~~ 132 (165)
T cd01868 54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTEEAK 132 (165)
T ss_pred EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999877642 35899999999999776667777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++++
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 133 AFAEKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999864
No 67
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=5.9e-26 Score=135.94 Aligned_cols=109 Identities=36% Similarity=0.529 Sum_probs=97.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++++|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+........
T Consensus 54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 132 (165)
T cd01864 54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEAC 132 (165)
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987653 357899999999999776667777888
Q ss_pred HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++. .++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 133 TLAEKNGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHHcCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 88888776 7899999999999999999864
No 68
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.94 E-value=5.5e-26 Score=135.48 Aligned_cols=109 Identities=31% Similarity=0.436 Sum_probs=98.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+.+.+..++..
T Consensus 51 l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~ 129 (161)
T cd04113 51 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEAS 129 (161)
T ss_pred EEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHH
Confidence 6899999999999999999999999999999999999999999998886653 357899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||+++.|+.++|++++.
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 130 RFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999875
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.94 E-value=4.7e-26 Score=137.11 Aligned_cols=110 Identities=31% Similarity=0.472 Sum_probs=98.4
Q ss_pred ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||+|++++. .+++.+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+...+.+.....
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 132 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLA 132 (170)
T ss_pred EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHH
Confidence 6899999999886 578889999999999999999999999999999988765556799999999999987677777788
Q ss_pred HHHHHHhCCcEEEeecCC---CCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKA---KVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~~ 111 (112)
.++++..+++++++||++ +.+++++|..+++
T Consensus 133 ~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 133 QRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred HHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 888888889999999999 8899999998864
No 70
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.94 E-value=7.9e-26 Score=138.09 Aligned_cols=109 Identities=32% Similarity=0.503 Sum_probs=97.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+..... ...|+++++||+|+.+.+.+......
T Consensus 51 ~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~-~~~~~ivv~nK~Dl~~~~~v~~~~~~ 129 (188)
T cd04125 51 LQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR-ENVIKVIVANKSDLVNNKVVDSNIAK 129 (188)
T ss_pred EEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCCCcccccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999887542 45899999999999876777777778
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 130 ~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 130 SFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888888899999999999999999998764
No 71
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=6e-26 Score=141.65 Aligned_cols=107 Identities=21% Similarity=0.387 Sum_probs=92.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
|++|||+|++.|..+++.+++++|++++|||++++++++.+ ..|...+.... ++.|+++||||+|+.+.
T Consensus 51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~ 128 (222)
T cd04173 51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELS 128 (222)
T ss_pred EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhh
Confidence 68999999999999999999999999999999999999998 56877765543 57999999999999642
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTN 110 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~ 110 (112)
..++.++...++++.+. +++||||+++.+ |+++|+.++
T Consensus 129 ~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~ 172 (222)
T cd04173 129 KQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVAT 172 (222)
T ss_pred hccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHH
Confidence 13667788899999996 999999999985 999998765
No 72
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=7.3e-26 Score=137.99 Aligned_cols=108 Identities=25% Similarity=0.409 Sum_probs=94.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc----cccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE----RVVG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----~~~~ 76 (112)
+++|||||++++..+++.+++++|++++|||++++++++.+. .|+..+.... .+.|+++|+||.|+.+. +.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~ 128 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVT 128 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcC
Confidence 689999999999999999999999999999999999999985 5888776543 57899999999998643 2456
Q ss_pred HHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 77 KEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..+++..++. +++++||++|.|+.++|+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 129 PAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred HHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHH
Confidence 7778888888888 9999999999999999998764
No 73
>PLN03110 Rab GTPase; Provisional
Probab=99.94 E-value=8.4e-26 Score=140.75 Aligned_cols=109 Identities=31% Similarity=0.467 Sum_probs=98.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..++++++++++|||++++.+++.+..|+..+.... ..++|+++++||+|+...+.+..+...
T Consensus 63 l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~ 141 (216)
T PLN03110 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQ 141 (216)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999887753 257899999999999776777777888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+.++.
T Consensus 142 ~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 142 ALAEKEGLSFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 74
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=9.4e-26 Score=135.07 Aligned_cols=110 Identities=39% Similarity=0.605 Sum_probs=95.2
Q ss_pred ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||+++ +......+++++|++++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+.+.+..++
T Consensus 49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 128 (165)
T cd04146 49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEE 128 (165)
T ss_pred EEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHH
Confidence 68999999985 345677789999999999999999999999999988887653 3579999999999997666677777
Q ss_pred HHHHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKV-NSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 111 (112)
..++++..+.+++++||++|. |++++|+.+++
T Consensus 129 ~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 129 GEKLASELGCLFFEVSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred HHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHH
Confidence 888888889999999999995 99999999864
No 75
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=1e-25 Score=135.94 Aligned_cols=107 Identities=27% Similarity=0.486 Sum_probs=92.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE--------- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------- 71 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+. .|+..+.... .+.|+++++||+|+.+
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 127 (173)
T cd04130 50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLA 127 (173)
T ss_pred EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHh
Confidence 689999999999999999999999999999999999999884 6888877532 4689999999999863
Q ss_pred ---cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 72 ---ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+.+..++...+++..+. +++++||++|.|++++|+.++
T Consensus 128 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 128 RYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 235566778888888887 999999999999999999864
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.94 E-value=1.8e-25 Score=133.53 Aligned_cols=105 Identities=26% Similarity=0.417 Sum_probs=90.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|+++|..+++.+++++|++++|+|++++.+++.+..|+..+.+.. .++|+++++||+|+.+. . ..+..
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~--~-~~~~~ 125 (161)
T cd04124 51 VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPS--V-TQKKF 125 (161)
T ss_pred EEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchh--H-HHHHH
Confidence 6899999999999999999999999999999999999999999999987643 46899999999998532 1 23445
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+.+++
T Consensus 126 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 126 NFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 566667889999999999999999998864
No 77
>KOG0097|consensus
Probab=99.94 E-value=3e-26 Score=131.52 Aligned_cols=108 Identities=36% Similarity=0.475 Sum_probs=98.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||+||++|+...+++|+++-+.+.|||++...+++.+..|+....... .++..+++++||.|+...+.+..++.
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeea 139 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEA 139 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHH
Confidence 47999999999999999999999999999999999999999999998876643 25677888999999998899999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
.+++++.|+.++++||++|.|+++.|-..
T Consensus 140 k~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 140 KEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred HHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 99999999999999999999999998654
No 78
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=3.2e-26 Score=136.62 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=85.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG- 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~- 80 (112)
+++|||||++++..++..+++++|++++|+|++++.+++....|+..+.........|+++++||+|+.+.. ...+.
T Consensus 46 ~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~ 123 (159)
T cd04150 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVT 123 (159)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHH
Confidence 689999999999999999999999999999999999999988887777654333468999999999986422 22222
Q ss_pred HHHH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLA----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+. ...++.++++||++|.|++++|++|.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 124 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 2221 112346789999999999999999876
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=2.7e-25 Score=132.61 Aligned_cols=109 Identities=31% Similarity=0.464 Sum_probs=98.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++...+..+++++|++++|+|++++++++....|+..+..... .+.|+++++||+|+.+.+..+.....
T Consensus 52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~ 130 (163)
T cd01860 52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQ 130 (163)
T ss_pred EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHH
Confidence 68999999999999999999999999999999999999999999999887653 67899999999998766666777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|+.++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 131 EYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999875
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.93 E-value=3.6e-25 Score=137.45 Aligned_cols=110 Identities=43% Similarity=0.643 Sum_probs=95.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||||++++..++..+++++|++++|||.+++++++.+.. |...+.......+.|+++|+||+|+...+.+..++.
T Consensus 64 l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~ 143 (211)
T PLN03118 64 LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEG 143 (211)
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHH
Confidence 6899999999999999999999999999999999999999876 655555443335689999999999977666777777
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++...+++++++||++|.|++++|+++.+
T Consensus 144 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 144 MALAKEHGCLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 7888888999999999999999999999864
No 81
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.93 E-value=4.3e-25 Score=131.47 Aligned_cols=109 Identities=33% Similarity=0.520 Sum_probs=97.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++++||+|+.+.+....++..
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~ 129 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGE 129 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHH
Confidence 68999999999999999999999999999999999999999999998876432 36899999999999665666677777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..+++++++||+++.|++++++++.+
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 130 KKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888899999999999999999999865
No 82
>PLN03108 Rab family protein; Provisional
Probab=99.93 E-value=3.7e-25 Score=137.34 Aligned_cols=109 Identities=36% Similarity=0.565 Sum_probs=98.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..+++++|++++|||++++.+++.+..|+..+.... ....|+++++||+|+...+.++.++..
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~ 135 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGE 135 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999998876653 257899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||+++.|++++|++++.
T Consensus 136 ~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 136 QFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999989999999999999999999998763
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.93 E-value=5.5e-25 Score=131.10 Aligned_cols=109 Identities=37% Similarity=0.549 Sum_probs=98.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.++....+.|+++++||+|+.. .....++..
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~ 129 (161)
T cd01863 51 LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGL 129 (161)
T ss_pred EEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHH
Confidence 6899999999999999999999999999999999999999999999998887667899999999999973 444566777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++++.+.+
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 130 KFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred HHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 84
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=1.8e-25 Score=136.00 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=84.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+|..+++++|++++|+|+++++++.....|+..+.......++|+++++||+|+.... ..++..
T Consensus 63 ~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~ 140 (181)
T PLN00223 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEIT 140 (181)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHH
Confidence 789999999999999999999999999999999999998887777776543333578999999999986432 233322
Q ss_pred HHHHHh-----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF-----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...-. .+.++++||++|.|+.++|++|.+
T Consensus 141 ~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 141 DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
T ss_pred HHhCccccCCCceEEEeccCCCCCCHHHHHHHHHH
Confidence 222111 124668999999999999999875
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.93 E-value=5.9e-25 Score=139.24 Aligned_cols=110 Identities=37% Similarity=0.580 Sum_probs=94.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--------DTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~D~~~~~ 73 (112)
++||||+|++.|..++..++.++|++++|||+++++||+.+..|+..+.... ...++|+++++||+|+...+
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~ 129 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR 129 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc
Confidence 6799999999999988889999999999999999999999999998887642 22468999999999997655
Q ss_pred cccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..++..+++.. .++.++++||++|.|++++|+++++
T Consensus 130 ~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 130 EVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred ccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 6666777666653 3678999999999999999999864
No 86
>KOG0395|consensus
Probab=99.93 E-value=3.9e-25 Score=135.63 Aligned_cols=111 Identities=60% Similarity=0.947 Sum_probs=103.6
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|+||+|++.+..+...++++++++++||++++..||+.+..++..+.+......+|+++||||+|+...+.++.+++
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg 131 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG 131 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH
Confidence 36899999999999999999999999999999999999999999999997766667799999999999988889999999
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..++++++|+||+.+.+++++|..|..
T Consensus 132 ~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 132 KALARSWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred HHHHHhcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 9999999999999999999999999998763
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.93 E-value=5.3e-25 Score=131.29 Aligned_cols=109 Identities=36% Similarity=0.570 Sum_probs=98.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|||++++.+++.+..|+..+..+.. .++|+++++||+|+.+......+...
T Consensus 51 ~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~ 129 (164)
T smart00175 51 LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAE 129 (164)
T ss_pred EEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHH
Confidence 67999999999999999999999999999999999999999999999887653 57999999999998765666777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++++.+.+
T Consensus 130 ~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 130 AFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 88
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=8.9e-25 Score=129.95 Aligned_cols=109 Identities=32% Similarity=0.535 Sum_probs=97.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++.+..+++.+++++|++++|+|++++++++.+..|+..+..... .++|+++++||+|+...+....+...
T Consensus 51 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~ 129 (162)
T cd04123 51 LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAE 129 (162)
T ss_pred EEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHH
Confidence 68999999999999999999999999999999999999999999998877643 37899999999999866666677777
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++.+..+.+++++||++|.|++++++++.+
T Consensus 130 ~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 130 EYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 788888999999999999999999999864
No 89
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=8e-26 Score=136.80 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=86.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++++++....|+..+.+.....+.|+++|+||.|+.+.. ...+..
T Consensus 59 l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~ 136 (175)
T smart00177 59 FTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEIT 136 (175)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHH
Confidence 689999999999999999999999999999999999999988888887654333568999999999986422 222222
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.. ....+.++++||++|.|++++|++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 171 (175)
T smart00177 137 EKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN 171 (175)
T ss_pred HHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence 211 112345778999999999999999865
No 90
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.93 E-value=1.1e-25 Score=134.92 Aligned_cols=108 Identities=21% Similarity=0.267 Sum_probs=90.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH----
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK---- 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~---- 77 (112)
+++|||||++++..++..+++++|++++|+|.+++.++.....|+..+.... .++|+++|+||+|+...+....
T Consensus 46 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~ 123 (164)
T cd04162 46 MELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKE 123 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHH
Confidence 7899999999999999999999999999999999999998888888876543 5799999999999875443321
Q ss_pred HHHHHHHHHhCCcEEEeecCC------CCChhHHhhhhcc
Q psy785 78 EQGASLARAFACTFLETSAKA------KVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~l~~ 111 (112)
..+..++++.+++++++||++ ++||+++|+.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 124 LELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred hCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 123445566678999999999 9999999999875
No 91
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.93 E-value=7.6e-25 Score=136.88 Aligned_cols=108 Identities=37% Similarity=0.550 Sum_probs=92.8
Q ss_pred ceEEeCCCcccchhhHHhhcc-cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMK-NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||||++ ......++. ++|++++|||++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..++.
T Consensus 52 l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 129 (221)
T cd04148 52 LVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG 129 (221)
T ss_pred EEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH
Confidence 6899999998 233445666 9999999999999999999999999887765446799999999999977677777777
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..++++++++||++|.||+++|+++++
T Consensus 130 ~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 130 RACAVVFDCKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred HHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 7888888899999999999999999999874
No 92
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=5e-25 Score=132.60 Aligned_cols=108 Identities=15% Similarity=0.244 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...++.+++++|++++|+|.+++.+++....|+..+.+.....+.|+++++||+|+.. ....++..
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~ 122 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMT 122 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHH
Confidence 6899999999999999999999999999999999999999999988887654445689999999999863 34455555
Q ss_pred HHHHHh------CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF------ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++.... .+.++++||++|.||+++|++|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 123 ELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred HHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence 554322 236889999999999999999874
No 93
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.93 E-value=1.2e-24 Score=133.24 Aligned_cols=108 Identities=27% Similarity=0.395 Sum_probs=93.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc----ccccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE----RVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~----~~~~~ 77 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. +.+..
T Consensus 52 l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~ 129 (193)
T cd04118 52 LGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDF 129 (193)
T ss_pred EEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCH
Confidence 6799999999999999999999999999999999999999999999887642 46899999999998532 23445
Q ss_pred HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 78 EQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..+++...+.+++++||++|.|++++|+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 130 HDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5667777778889999999999999999999864
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=2.1e-24 Score=128.63 Aligned_cols=110 Identities=50% Similarity=0.806 Sum_probs=97.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..++++++++++++|++++.+++.+..|...+.......++|+++|+||+|+.+.+........
T Consensus 50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~ 129 (164)
T cd04139 50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAA 129 (164)
T ss_pred EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999998888655567999999999999764455566677
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++.+++++||++|.|++++|+++.+
T Consensus 130 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 130 NLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 778888899999999999999999998864
No 95
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.93 E-value=1.3e-24 Score=133.87 Aligned_cols=110 Identities=32% Similarity=0.481 Sum_probs=89.3
Q ss_pred ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~ 71 (112)
+++|||||.+++.. .....++++|++++|||+++++|++.+..|+..+.+... ..++|+++|+||+|+.+
T Consensus 51 l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 51 LHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred EEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 67999999765421 133457899999999999999999999999988877642 35799999999999976
Q ss_pred cccccHHHHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLAR-AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+....+..+.++. .++++++++||++|.|++++|+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 131 HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 56666666666654 45889999999999999999998764
No 96
>KOG0393|consensus
Probab=99.92 E-value=4.1e-25 Score=133.91 Aligned_cols=107 Identities=30% Similarity=0.473 Sum_probs=95.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+.+|||+||++|..+++..|+++|+++++|++.++.|++++ ..|++++..++ ++.|+++||+|.|+..+
T Consensus 55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~ 132 (198)
T KOG0393|consen 55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQ 132 (198)
T ss_pred EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHH
Confidence 68999999999999898899999999999999999999997 67999999987 78999999999999743
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..+..++....+++.|. .++||||+++.|+.++|+..+
T Consensus 133 ~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~ 175 (198)
T KOG0393|consen 133 RQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAI 175 (198)
T ss_pred hccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHH
Confidence 24667778889999884 999999999999999998764
No 97
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.92 E-value=1.9e-24 Score=130.47 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++.+..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+.. ..++..
T Consensus 60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~ 137 (173)
T cd04154 60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIR 137 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHH
Confidence 689999999999999999999999999999999999999888888877654334679999999999986432 344444
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.. ..+++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 138 EALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 4432 23568999999999999999999875
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=3.1e-24 Score=132.10 Aligned_cols=110 Identities=41% Similarity=0.620 Sum_probs=92.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC-cccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE-ERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~ 80 (112)
+++|||||+++|..+++.++.++|++++|+|++++.+++.+..|+..+.+.....++|+++++||+|+.+ .+.+..+..
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~ 128 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDA 128 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHH
Confidence 6899999999999999999999999999999999999999999999988876656799999999999865 244444444
Q ss_pred HHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLAR-AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+... ..+.+++++||++|.|++++|+++++
T Consensus 129 ~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 129 LSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred HHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 43333 34678999999999999999999864
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.92 E-value=2.5e-24 Score=129.72 Aligned_cols=108 Identities=25% Similarity=0.435 Sum_probs=93.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++.|..++..+++++|++++|+|++++.+++.+. .|+..+... ..+.|+++++||+|+.+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~ 127 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLN 127 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHh
Confidence 679999999999999999999999999999999999999885 588777654 367999999999998542
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.++.+++..+++..+. ++++|||++|.|++++|+.+++
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 128 DMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred hccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence 24566777888888886 8999999999999999998864
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.92 E-value=7.7e-24 Score=127.22 Aligned_cols=110 Identities=31% Similarity=0.529 Sum_probs=95.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+++|||||++.+..++..+++++|++++++|++++.+++....|...+...... .++|+++++||+|+..++....+
T Consensus 51 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~ 130 (172)
T cd01862 51 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK 130 (172)
T ss_pred EEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH
Confidence 679999999999999999999999999999999999999988898877665432 37899999999999755555677
Q ss_pred HHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....+++..+ .+++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 131 KAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred HHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 7777888777 69999999999999999998764
No 101
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=9e-24 Score=125.85 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=86.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++++..++..+++++|++++|+|++++.++.....|+..+.+... ..++|+++++||+|+.+... ..+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~ 124 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVK 124 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHH
Confidence 68999999999999999999999999999999999999888888887766432 24799999999999864321 222
Q ss_pred HHHHHH-----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 80 GASLAR-----AFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 80 ~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
...... ...++++++||++|.|++++|++|.+|
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 125 ITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred HHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 222111 123468999999999999999999876
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=1.6e-23 Score=124.34 Aligned_cols=110 Identities=57% Similarity=0.961 Sum_probs=99.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++||+||++.+..++..+++++|++++|+|++++++++.+..|...+.........|+++++||+|+.+.+....+...
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 128 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGK 128 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHH
Confidence 68999999999999999999999999999999999999999999888887655457999999999999876666777888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+...++.+++++||+++.|++++|+++.+
T Consensus 129 ~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 129 ALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 888888899999999999999999999875
No 103
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.91 E-value=9.3e-24 Score=126.47 Aligned_cols=109 Identities=23% Similarity=0.357 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++.+..++..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+.+. ....+..
T Consensus 52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~ 129 (167)
T cd04160 52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIK 129 (167)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHH
Confidence 68999999999999999999999999999999999889888888888876544467999999999998642 2233333
Q ss_pred HHHHH-------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARA-------FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
++... .+++++++||++|.|+++++++|.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 130 EVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred HHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 33322 24589999999999999999999864
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.91 E-value=1.7e-23 Score=126.89 Aligned_cols=110 Identities=37% Similarity=0.620 Sum_probs=97.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..++.++++++++||+++..+++.+..|+..+.+.....+.|+++++||+|+...+........
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~ 130 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK 130 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH
Confidence 58999999999999999999999999999999999999999999888887655567899999999999765666666667
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++.++.+++++||+++.|+.++++++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 131 ELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 777778889999999999999999999864
No 105
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.91 E-value=3e-24 Score=129.01 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=88.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH-HH-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK-EQ- 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~- 79 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+........ ..
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~ 124 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEY 124 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887764446799999999999975432111 11
Q ss_pred --HHHHHHHh--CCcEEEeecCCC------CChhHHhhhhcc
Q psy785 80 --GASLARAF--ACTFLETSAKAK------VNSWLCVECTND 111 (112)
Q Consensus 80 --~~~~~~~~--~~~~~~~Sa~~~------~~v~~~~~~l~~ 111 (112)
...++++. .+.+++|||++| .|+.+.|+||.+
T Consensus 125 ~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 125 LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 12233223 357888999998 899999999975
No 106
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=1.6e-23 Score=126.53 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=86.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG- 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~- 80 (112)
+.+|||||++++...+..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+... ...++.
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~ 138 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEIS 138 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHH
Confidence 68999999999999999999999999999999999999888787777766544457999999999998642 223322
Q ss_pred HHHH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLA----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+. ...+++++++||++|.|++++|++|.+
T Consensus 139 ~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 139 ESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 2221 223567999999999999999999875
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.91 E-value=1.2e-23 Score=128.06 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=87.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++.+++....|+..+.+.....++|+++++||+|+.+. .......
T Consensus 54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~ 131 (183)
T cd04152 54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVE 131 (183)
T ss_pred EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHH
Confidence 68999999999999999999999999999999999999988888888876654467999999999998632 2233333
Q ss_pred HHHH--Hh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR--AF----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~--~~----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.. .. +++++++||++|.|++++++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 132 KLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred HHhCccccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence 3322 11 246899999999999999999864
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.91 E-value=1.8e-23 Score=127.24 Aligned_cols=108 Identities=16% Similarity=0.250 Sum_probs=83.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++++++....++..+.........|+++++||.|+.+.. ...+..
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~ 140 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVT 140 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHH
Confidence 689999999999999999999999999999999999999888777766543223568999999999986422 222221
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ....+.++++||++|.|+.++|+++.+
T Consensus 141 ~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 141 EKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred HHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 111 112235779999999999999999864
No 109
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=5.9e-23 Score=123.18 Aligned_cols=109 Identities=33% Similarity=0.452 Sum_probs=94.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+.|+++++||+|+.+.+.+......
T Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~ 136 (169)
T cd04114 58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAE 136 (169)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHH
Confidence 6799999999999988999999999999999999999999999998876643 246899999999999766666666566
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+....+++++||++|.|+.++|+.+.+
T Consensus 137 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 137 EFSDAQDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred HHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 666666789999999999999999999864
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.91 E-value=8.5e-24 Score=125.84 Aligned_cols=108 Identities=14% Similarity=0.182 Sum_probs=82.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|.+++.++.....|+..+.+.....++|+++++||+|+.+.. ...+..
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~ 122 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEIS 122 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHH
Confidence 689999999999999999999999999999999988887666666555443333578999999999986422 122221
Q ss_pred H-HH----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 S-LA----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~-~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. +. ...+++++++||++|.|++++|+++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 123 EKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 1 11 112357999999999999999999875
No 111
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=1.3e-23 Score=125.10 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=86.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.++.....|+..+.+.....+.|+++++||+|+.... ...+..
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~ 123 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEIT 123 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHH
Confidence 689999999999999999999999999999999999999888888887665433579999999999986321 122222
Q ss_pred H------HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 S------LARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~------~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. ++.+.+++++++||++|.|++++|+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 124 RRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 1 12223457999999999999999999875
No 112
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.91 E-value=1.2e-23 Score=126.59 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+||++|++.+..++..+++++|++++|+|.+++.+++.+..|+..+.. ..++|+++|+||+|+.+.+........
T Consensus 56 l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~ 132 (169)
T cd01892 56 LILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPD 132 (169)
T ss_pred EEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHH
Confidence 67999999999999999999999999999999999999999888876533 246899999999999654443334456
Q ss_pred HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.+++ .++++||++|.|++++|+.+.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 163 (169)
T cd01892 133 EFCRKLGLPPPLHFSSKLGDSSNELFTKLAT 163 (169)
T ss_pred HHHHHcCCCCCEEEEeccCccHHHHHHHHHH
Confidence 67777777 5799999999999999998864
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.91 E-value=8.4e-23 Score=120.64 Aligned_cols=109 Identities=35% Similarity=0.574 Sum_probs=96.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+||+||++.+...+..+++++|++++|+|++++++++.+..|+..+..... .+.|+++++||+|+........++..
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~ 129 (159)
T cd00154 51 LQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIPIILVGNKIDLEDQRQVSTEEAQ 129 (159)
T ss_pred EEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEcccccccccccHHHHH
Confidence 68999999999999999999999999999999999999999999988877542 46899999999999744566677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+.+++++||+++.|+++++.++.+
T Consensus 130 ~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 130 QFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 888888899999999999999999999864
No 114
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.90 E-value=2.2e-23 Score=123.94 Aligned_cols=109 Identities=16% Similarity=0.206 Sum_probs=89.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++.+...+..+++++|++++|+|+++++++.....|+..+.......+.|+++++||+|+.... ..++..
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~ 122 (158)
T cd00878 45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELI 122 (158)
T ss_pred EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHH
Confidence 689999999999999999999999999999999999999888888887775545679999999999987533 222222
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
.... ...++++++||++|.|++++|++|.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 123 EKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred HhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 2222 234589999999999999999999864
No 115
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=3.6e-23 Score=126.36 Aligned_cols=108 Identities=25% Similarity=0.425 Sum_probs=91.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC---------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE--------- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--------- 71 (112)
+.+|||+|++.+......+++++++++++||++++++++.+. .|+..+.+.. .+.|+++|+||+|+.+
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~ 128 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYR 128 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccc
Confidence 679999999988877777889999999999999999999986 5999887654 4699999999999853
Q ss_pred -cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 72 -ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+..+....+++..+. ++++|||++|.|++++|+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 129 TQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred cCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHH
Confidence 233445667778888885 8999999999999999999864
No 116
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.90 E-value=5.5e-23 Score=123.98 Aligned_cols=108 Identities=27% Similarity=0.474 Sum_probs=89.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||+++|..++..+++++|+++++||++++++++.+. .|...+.... .+.|+++++||+|+.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~ 128 (175)
T cd01870 51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELA 128 (175)
T ss_pred EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhh
Confidence 689999999999988888899999999999999999998885 5888776542 47899999999998542
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+......++++..+. ++++|||++|.|++++|+++.+
T Consensus 129 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 129 KMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred hccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 12334556677777665 8999999999999999999864
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=9.4e-23 Score=124.57 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..++++++++++|+|.++..+++....|+..+.+.....+.|+++++||+|+.. ....++.+
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~ 142 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELR 142 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHH
Confidence 5789999999999999999999999999999999999988888888887654446799999999999863 34455555
Q ss_pred HHHHH----------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARA----------------FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+.... ..+++++|||++|.|++++|+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 143 QALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred HHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 54432 22478999999999999999999763
No 118
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1.7e-22 Score=121.16 Aligned_cols=108 Identities=28% Similarity=0.309 Sum_probs=85.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 78 (112)
+++|||||++.+...+..+++++|++++|+|++++.+++.+. .|...+.... .+.|+++|+||+|+.+.... ..+
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~ 126 (166)
T cd01893 49 TTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEE 126 (166)
T ss_pred EEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHH
Confidence 679999999988888888899999999999999999999975 6888777643 47899999999999754432 122
Q ss_pred HHHHHHHHh-C-CcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAF-A-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~-~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....+...+ + .+++++||++|.|++++|+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 127 EMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred HHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 233333433 3 38999999999999999998753
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.89 E-value=1.9e-22 Score=121.02 Aligned_cols=108 Identities=28% Similarity=0.472 Sum_probs=90.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||||++++.......++.+|++++|||++++.++.... .|+..+.... .+.|+++|+||+|+.+..
T Consensus 50 l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~ 127 (171)
T cd00157 50 LGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLE 127 (171)
T ss_pred EEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcc
Confidence 689999999999888888899999999999999999887764 5777776643 479999999999986543
Q ss_pred ----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 ----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..+...++...+++ +++++||++|.|++++|+++++
T Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 128 KGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 2345566777777887 9999999999999999999875
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.89 E-value=2.6e-22 Score=122.35 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=87.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|+++++++.....|+..+.+.....++|+++++||+|+.. ..+.++..
T Consensus 63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~ 140 (184)
T smart00178 63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELR 140 (184)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHH
Confidence 6799999999999999999999999999999999999988888887776543335789999999999863 33444444
Q ss_pred HHHHH------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARA------------FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+.... ..+.+++|||++|.|++++++||.++
T Consensus 141 ~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 141 YALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred HHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 33210 13469999999999999999999753
No 121
>KOG4252|consensus
Probab=99.89 E-value=1.5e-23 Score=124.51 Aligned_cols=108 Identities=27% Similarity=0.405 Sum_probs=101.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+||+.|..+...||++|.++++||+.++..||+.+..|+..+.... .++|.++|-||+|+.+..++...+.+
T Consensus 71 ~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE 148 (246)
T KOG4252|consen 71 SMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVE 148 (246)
T ss_pred HHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHH
Confidence 4689999999999999999999999999999999999999999999998854 67999999999999998999889999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
-+++.+...++.+|++...||..+|..|++
T Consensus 149 ~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 149 GLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999998875
No 122
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.88 E-value=1e-21 Score=121.22 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=82.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------------CCCCCcEEEE
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------------DTDDVPMVLV 63 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv 63 (112)
+++|||+|+++|..++..+++++|++++|||+++++|++.+..|+.++.... ...++|+++|
T Consensus 56 l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilV 135 (202)
T cd04102 56 VELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVI 135 (202)
T ss_pred EEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999997642 1246899999
Q ss_pred eeCCCCCCcccccHHH----HHHHHHHhCCcEEEeecCCCC
Q psy785 64 GNKCDLEEERVVGKEQ----GASLARAFACTFLETSAKAKV 100 (112)
Q Consensus 64 ~nK~D~~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~ 100 (112)
|||.|+.+++.+.... ...++.+.+.+.++.+++++.
T Consensus 136 GnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 136 GTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred EECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 9999997655444432 334677789999999998764
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=1.4e-21 Score=118.22 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=81.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|+++..+.+....|.... . .++|+++|+||+|+.+.. ......
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~ 141 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQ 141 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHH
Confidence 679999999999999999999999999999999876666666664322 2 468999999999986422 122334
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.+++ +++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence 55565665 4899999999999999999864
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.87 E-value=1.6e-21 Score=118.04 Aligned_cols=109 Identities=22% Similarity=0.343 Sum_probs=90.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+||.+|+..++..|+.+++++|++|+|+|.++++.+......+..+.......++|+++++||+|+.+ ....++..
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~ 137 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIK 137 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHH
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHH
Confidence 6899999999999999999999999999999999988888888888887765557899999999999864 23344443
Q ss_pred HHHH------HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLAR------AFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
.... ...+.++.|||.+|.|+.+.++||.++
T Consensus 138 ~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 138 EYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp HHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 3221 234579999999999999999999763
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.85 E-value=7.2e-21 Score=112.43 Aligned_cols=108 Identities=17% Similarity=0.281 Sum_probs=85.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++...+..+++++|++++|+|++++.++.....|+..+.......++|+++++||+|+.+... .....
T Consensus 46 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~ 123 (159)
T cd04159 46 LKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELI 123 (159)
T ss_pred EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHH
Confidence 6899999999999999999999999999999999998888877877776544346789999999999865332 12211
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ....++++++||++|.|++++++++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 124 EQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 111 112357899999999999999999875
No 126
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=3e-20 Score=115.63 Aligned_cols=105 Identities=30% Similarity=0.500 Sum_probs=89.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..++.+++++++++|+++..++..+..|+..+.+.. .++|+++++||+|+.+. .... ...
T Consensus 60 i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~-~~~~-~~~ 135 (215)
T PTZ00132 60 FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDR-QVKA-RQI 135 (215)
T ss_pred EEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccc-cCCH-HHH
Confidence 6899999999999999999999999999999999999999999999987653 56899999999998643 2222 233
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+++..++.++++||++|.|++++|.+++
T Consensus 136 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 136 TFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 56667788999999999999999998875
No 127
>KOG3883|consensus
Probab=99.85 E-value=3.8e-20 Score=107.44 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=101.4
Q ss_pred CceEEeCCCcccc-hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 1 MLEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
++.++||+|...+ ..+.+.|+.-+|++++||+..+++||+.+......|.++.+...+|+++++||.|+.++.++....
T Consensus 61 ~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~ 140 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDV 140 (198)
T ss_pred eEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHH
Confidence 4789999998887 678888999999999999999999999999988899988888899999999999998888898999
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+..|++.-.+..++++|++...+.+.|..+.
T Consensus 141 A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 141 AQIWAKREKVKLWEVTAMDRPSLYEPFTYLA 171 (198)
T ss_pred HHHHHhhhheeEEEEEeccchhhhhHHHHHH
Confidence 9999999999999999999999999998764
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.84 E-value=9.1e-20 Score=109.76 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||+.++...+..+++++|++++|+|.++..++.....|+..+.+.....++|+++++||+|+.+... .+.
T Consensus 60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~-- 135 (173)
T cd04155 60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE-- 135 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH--
Confidence 6799999999998889999999999999999999888888777777766544345799999999999864322 222
Q ss_pred HHHHHhC--------CcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARAFA--------CTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~~~--------~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+....+ ++++++||++|.|++++|+++.+|
T Consensus 136 -i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 136 -IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred -HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 222222 257899999999999999999865
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.84 E-value=2.9e-20 Score=111.55 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=82.3
Q ss_pred CceEEeCCCccc----chhhHHhh---cccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCC
Q psy785 1 MLEILDTAGTEQ----FTAMRDLY---MKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEE 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~ 71 (112)
.+.+|||||+.. ...+...+ ++++|++++|+|++++ ++++.+..|...+...... .++|+++|+||+|+.+
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 368999999642 22223333 4569999999999998 7899888998888765432 4689999999999865
Q ss_pred cccccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.... ......+... .+.+++++||+++.|++++|+++.+
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 129 EEEL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred chhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHh
Confidence 4433 3334444444 3678999999999999999999875
No 130
>KOG0073|consensus
Probab=99.84 E-value=4.2e-20 Score=108.11 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=90.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH-
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ- 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~- 79 (112)
++++||.+||...++.|+.|++.+|++|+|+|.+++..++.....+..+.......+.|+++++||.|+.. ..+...
T Consensus 61 ~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i 138 (185)
T KOG0073|consen 61 TLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEI 138 (185)
T ss_pred EEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHH
Confidence 47899999999999999999999999999999999999998887777776644446799999999999973 222222
Q ss_pred -----HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 -----GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 -----~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++...++++.|||.+|.++.+.+.|+.+
T Consensus 139 ~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 139 SKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred HHhhCHHHhccccCceEEEEeccccccHHHHHHHHHH
Confidence 33445666889999999999999999999864
No 131
>PLN00023 GTP-binding protein; Provisional
Probab=99.84 E-value=5e-20 Score=119.57 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=76.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----------CCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----------TDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~D~~ 70 (112)
++||||+|+++|..++..++++++++|+|||+++..+++.+..|+..+..... ..++|+++||||+|+.
T Consensus 85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 78999999999999999999999999999999999999999999999987632 1258999999999996
Q ss_pred Ccc---c---ccHHHHHHHHHHhCC
Q psy785 71 EER---V---VGKEQGASLARAFAC 89 (112)
Q Consensus 71 ~~~---~---~~~~~~~~~~~~~~~ 89 (112)
+.+ . ...+.+++++++.++
T Consensus 165 ~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 165 PKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccccHHHHHHHHHHcCC
Confidence 532 2 256788999998875
No 132
>KOG0070|consensus
Probab=99.83 E-value=2e-20 Score=111.36 Aligned_cols=109 Identities=17% Similarity=0.291 Sum_probs=90.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
.|++||.+||++++.+|+.|+++.+++|+|+|.++.+.+...+.-+..+..+.+..+.|+++++||.|++.. .+..+.
T Consensus 62 ~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei 139 (181)
T KOG0070|consen 62 SFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEI 139 (181)
T ss_pred EEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHH
Confidence 378999999999999999999999999999999999999988888888888776678999999999999743 233332
Q ss_pred HHHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.. +...+.+..|||.+|.|+.|.++|+.+
T Consensus 140 ~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 140 TNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HhHhhhhccCCCCcEEeeccccccccHHHHHHHHHH
Confidence 2221 223568899999999999999999864
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=8.8e-20 Score=119.85 Aligned_cols=110 Identities=18% Similarity=0.138 Sum_probs=84.8
Q ss_pred ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||... ....+..++++++++++|+|+++.++++.+..|..++..+... .++|+++|+||+|+.+..
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~ 287 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE 287 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch
Confidence 68999999642 2223334567899999999999888899999999998876432 468999999999997544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.........++...+.+++++||+++.|++++++++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 288 EEREKRAALELAALGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 33333344455556789999999999999999998864
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.82 E-value=1.5e-19 Score=108.24 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|||||+.... .........+|++++|+|+++..+ ++....|+..+.+.. .+.|+++++||+|+.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~ 126 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccC
Confidence 6899999984211 111111234689999999988754 355567877776532 468999999999997
Q ss_pred CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...... ..++....+++++++||++|.|++++++++.+
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 127 TFEDLSE--IEEEEELEGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred chhhHHH--HHHhhhhccCceEEEEecccCCHHHHHHHHHH
Confidence 5443322 34455545679999999999999999999864
No 135
>KOG0075|consensus
Probab=99.82 E-value=1.4e-19 Score=104.48 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=87.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+||.|||++|.++|..|+++++++++++|.++++.++.-+.-+..+.....-.++|++++|||.|++. ..+...+.
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li 144 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALI 144 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHH
Confidence 6799999999999999999999999999999999998887777777777765557899999999999864 22232222
Q ss_pred HH-----HHHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SL-----ARAFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
.- .....+..|.+||++..|++.+.+|++++
T Consensus 145 ~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 145 ERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred HHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 11 11223468999999999999999999864
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=3.2e-19 Score=106.21 Aligned_cols=104 Identities=18% Similarity=0.064 Sum_probs=73.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--c
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--V 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~ 75 (112)
.+++|||||++++......+++++|++++|+|+++ +.+.+.+. .+.. . ...|+++++||+|+.+... .
T Consensus 52 ~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~ 124 (164)
T cd04171 52 RLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILEL-L--GIKRGLVVLTKADLVDEDWLEL 124 (164)
T ss_pred EEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHH-h--CCCcEEEEEECccccCHHHHHH
Confidence 36899999999987777778899999999999986 33333221 1221 1 2249999999999965321 1
Q ss_pred cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+..+..+. .+.+++++||++|.|++++++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 125 VEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 12233333333 3579999999999999999998764
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.80 E-value=2.7e-19 Score=104.69 Aligned_cols=98 Identities=20% Similarity=0.150 Sum_probs=74.1
Q ss_pred eEEeCCCcc-----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH
Q psy785 3 EILDTAGTE-----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK 77 (112)
Q Consensus 3 ~i~Dt~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 77 (112)
.+|||||+. .+..+.. .++++|++++|+|++++.++.. ..|... ...|+++++||+|+.+ +....
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~-------~~~p~ilv~NK~Dl~~-~~~~~ 107 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASI-------FVKPVIGLVTKIDLAE-ADVDI 107 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHh-------ccCCeEEEEEeeccCC-cccCH
Confidence 589999983 3444433 5899999999999999988754 234322 1249999999999864 33345
Q ss_pred HHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 78 EQGASLARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+...++++..+. +++++||++|.|++++|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 108 ERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 566677777776 899999999999999999875
No 138
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.79 E-value=2.4e-18 Score=101.95 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=76.8
Q ss_pred ceEEeCCCcccchh------hHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA------MRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||++.+.. ++..++. ++|++++|+|.+++++.. .|...+.+ .++|+++++||+|+.+..
T Consensus 45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKR 117 (158)
T ss_pred EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccc
Confidence 68999999987653 3555664 999999999998765432 34444433 468999999999997544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... .....+...++.+++++||.+|.|+.++++++.+
T Consensus 118 ~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~ 154 (158)
T cd01879 118 GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAE 154 (158)
T ss_pred cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHH
Confidence 332 2345666777899999999999999999998753
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.79 E-value=1.9e-18 Score=113.47 Aligned_cols=109 Identities=17% Similarity=0.110 Sum_probs=82.0
Q ss_pred ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+... ...+..++++++++++|+|+++. ++++.+..|..++..+... .++|+++|+||+|+.
T Consensus 207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 689999997521 12233346689999999999986 6788888888888765432 478999999999996
Q ss_pred CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ..+..+.+.+..+.+++++||+++.|++++++++.+
T Consensus 287 ~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 287 DEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred ChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence 5432 233344455566789999999999999999998864
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.79 E-value=1.2e-17 Score=97.40 Aligned_cols=110 Identities=40% Similarity=0.651 Sum_probs=85.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH-H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ-G 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~ 80 (112)
+.+||+||+..+...+...++++|++++++|.+++.+......|.............|+++++||+|+.......... .
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~ 126 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELA 126 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHH
Confidence 689999999988888888999999999999999999988887773333333334679999999999986543332222 2
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.......+.+++++|+.++.|+.++++++.+
T Consensus 127 ~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 127 EQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred HHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 3334445679999999999999999999863
No 141
>KOG0071|consensus
Probab=99.78 E-value=2.6e-18 Score=98.53 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=92.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+|++||.+||++.+.+|+.||.+..++|||+|.++.+.++..+.-+..+..+.+....|+++.+||.|++... .++++
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei 139 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEI 139 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHH
Confidence 4789999999999999999999999999999999999899888888888888777889999999999997533 34444
Q ss_pred HHHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+. +...+-+.++||.+|.|+.+.|.|+.+
T Consensus 140 ~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsn 175 (180)
T KOG0071|consen 140 QDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSN 175 (180)
T ss_pred HHHhccccccCCccEeeccccccchhHHHHHHHHHh
Confidence 4332 334578899999999999999999875
No 142
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.78 E-value=3.7e-18 Score=119.22 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=80.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||+++|...+..+++++|++++|+|+++..+.+....|...+. .++|+++++||+|+.... ......
T Consensus 72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~ 144 (595)
T TIGR01393 72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKK 144 (595)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHH
Confidence 6899999999999999999999999999999998766666666654332 358999999999986322 122234
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++...+++ +++++||++|.|+.++|+++.+
T Consensus 145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~ 177 (595)
T TIGR01393 145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVK 177 (595)
T ss_pred HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHH
Confidence 45555565 4899999999999999998864
No 143
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=3.6e-18 Score=102.81 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=78.9
Q ss_pred ceEEeCCCcccc----hhh---HHhhcccCCEEEEEEeCCCh------hhHHHHHHHHHHHHhhcCC------CCCcEEE
Q psy785 2 LEILDTAGTEQF----TAM---RDLYMKNGQGFILVYSITAQ------STFNDLSDLREQILRVKDT------DDVPMVL 62 (112)
Q Consensus 2 ~~i~Dt~g~~~~----~~~---~~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~p~iv 62 (112)
+.+|||||.... ..+ ....++++|++++|+|+++. .+++....|...+...... .++|+++
T Consensus 46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 125 (176)
T cd01881 46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY 125 (176)
T ss_pred EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence 689999997421 112 23357789999999999987 5777777777777654321 4689999
Q ss_pred EeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 63 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|+||+|+..................+.+++++||+++.|++++++++..
T Consensus 126 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 126 VLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 9999999754433222222333334668999999999999999998764
No 144
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.77 E-value=3.5e-18 Score=105.64 Aligned_cols=103 Identities=20% Similarity=0.167 Sum_probs=72.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-- 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-- 75 (112)
+.||||||++++...+...+.++|++++|+|++++ .+.+.+.. +.. . ...|+++++||+|+.+....
T Consensus 85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~-~--~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEI-M--GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHH-c--CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999877777778899999999999863 22332222 221 1 22478999999998642221
Q ss_pred cHHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+...++.... +++++++||++|.|++++++.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 112233333332 568999999999999999998864
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.77 E-value=4.9e-18 Score=104.24 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=70.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~ 80 (112)
+++|||||+++|...+..+++++|++++|+|+++.. ......|+..+.. .++|+++++||+|+.+... ....+.
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~ 141 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEV 141 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHH
Confidence 689999999999999999999999999999998732 2222334444332 4689999999999864322 112333
Q ss_pred HHHHHH-------hCCcEEEeecCCCCChhHH
Q psy785 81 ASLARA-------FACTFLETSAKAKVNSWLC 105 (112)
Q Consensus 81 ~~~~~~-------~~~~~~~~Sa~~~~~v~~~ 105 (112)
.++... .+++++++||++|.|+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 142 FDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 343322 3678999999999877544
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=1.3e-17 Score=99.70 Aligned_cols=105 Identities=22% Similarity=0.135 Sum_probs=73.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~ 80 (112)
+.+|||||++.|..++...++.+|++++|+|+++....+.... +..+.. .++|+++|+||+|+.+..... ....
T Consensus 52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~ 126 (168)
T cd01887 52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEA-IKLAKA----ANVPFIVALNKIDKPNANPERVKNEL 126 (168)
T ss_pred EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH----cCCCEEEEEEceecccccHHHHHHHH
Confidence 6899999999999888889999999999999987432222111 122222 468999999999986422110 1111
Q ss_pred HHHHH------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLAR------AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+.. ...++++++||++|.|+.++++++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 127 SELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred HHhhccccccccCcCcEEEeecccCCCHHHHHHHHHH
Confidence 11111 11358999999999999999999864
No 147
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.76 E-value=5.1e-18 Score=107.54 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=78.9
Q ss_pred ccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785 11 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC 89 (112)
Q Consensus 11 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 89 (112)
++|+.+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+.+....+....+ ...++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~ 98 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGY 98 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCC
Confidence 678889999999999999999999887 89999999876643 5699999999999975444333333333 35788
Q ss_pred cEEEeecCCCCChhHHhhhhcc
Q psy785 90 TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 90 ~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++++||++|.|++++|+.+.+
T Consensus 99 ~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred eEEEEecCCchhHHHHHhhhcC
Confidence 9999999999999999998764
No 148
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.76 E-value=1e-17 Score=103.51 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=76.2
Q ss_pred ceEEeCCCccc---------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQ---------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.+|||||..+ +...+ ..+.++|++++|+|.+++.+......|...+... ...++|+++|+||+|+.+.
T Consensus 91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCCh
Confidence 67999999732 11111 2367899999999999988887776776665543 2356899999999998654
Q ss_pred ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.... ......+.+++++||++|.|+.++++++.+
T Consensus 169 ~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 169 EELE-----ERLEAGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred HHHH-----HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3221 333445668999999999999999998864
No 149
>KOG0076|consensus
Probab=99.75 E-value=2.7e-18 Score=101.47 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=88.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.|||.+||+..+++|..||..++++++++|+++++-++....-++.+..+-...+.|+++.+||.|+.+.-. ..++.
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~ 148 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELD 148 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHH
Confidence 6799999999999999999999999999999999999988887777777766668999999999999875322 23322
Q ss_pred HH---HH---HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SL---AR---AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~---~~---~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. +. +...++.++||.+|.||++..+|++.
T Consensus 149 ~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 149 GVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred HHhhhhhhcCCccCccccchhhhcccHHHHHHHHHH
Confidence 22 22 22468999999999999999999863
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.75 E-value=1.2e-17 Score=99.67 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=71.6
Q ss_pred EEeCCCcc-----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 4 ILDTAGTE-----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 4 i~Dt~g~~-----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+|||||+. .+..+. ..++++|++++|+|.++..++. ..|+..+ ..+.|+++++||+|+.. ...+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~ 109 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD---ADVA 109 (158)
T ss_pred cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc---ccHH
Confidence 69999973 222222 3478999999999999877652 3344333 13579999999999853 2345
Q ss_pred HHHHHHHHhCC--cEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFAC--TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++.+.++ +++++||++|.|++++|+.+.+
T Consensus 110 ~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 110 ATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred HHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 56667777775 8999999999999999998764
No 151
>KOG4423|consensus
Probab=99.75 E-value=7.5e-19 Score=104.98 Aligned_cols=110 Identities=28% Similarity=0.393 Sum_probs=93.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccc-cH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVV-GK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~-~~ 77 (112)
+++||.+||++|..+.+.+|+.+.+..+|||++..-+|+....|..++..... ..+.|+++.+||+|....... ..
T Consensus 77 lqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~ 156 (229)
T KOG4423|consen 77 LQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEAT 156 (229)
T ss_pred HHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhH
Confidence 57999999999999999999999999999999999999999999988865432 246899999999998643222 23
Q ss_pred HHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 78 EQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....++++++|+ .++++|+|.+.++.|.-+.+++
T Consensus 157 ~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe 191 (229)
T KOG4423|consen 157 RQFDNFKKENGFEGWTETSAKENKNIPEAQRELVE 191 (229)
T ss_pred HHHHHHHhccCccceeeeccccccChhHHHHHHHH
Confidence 567788899998 8999999999999999888765
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.75 E-value=3.1e-18 Score=105.51 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=68.6
Q ss_pred ceEEeCCC-----------cccchhhHHhhcc----cCCEEEEEEeCCChhhHHHHHHHH--------HHHHhhcCCCCC
Q psy785 2 LEILDTAG-----------TEQFTAMRDLYMK----NGQGFILVYSITAQSTFNDLSDLR--------EQILRVKDTDDV 58 (112)
Q Consensus 2 ~~i~Dt~g-----------~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~ 58 (112)
+.+||||| ++++...+..++. .++++++|+|.+....+. ..|. ..+.......++
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 131 (201)
T PRK04213 54 FILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGI 131 (201)
T ss_pred eEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCC
Confidence 68999999 5677776666654 457888888875432110 1110 011111112468
Q ss_pred cEEEEeeCCCCCCcccccHHHHHHHHHHhCC---------cEEEeecCCCCChhHHhhhhcc
Q psy785 59 PMVLVGNKCDLEEERVVGKEQGASLARAFAC---------TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 59 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|+++|+||+|+.+.. .+...++++.+++ +++++||++| |++++++++.+
T Consensus 132 p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 132 PPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred CeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHH
Confidence 999999999986433 2344555555554 5899999999 99999999864
No 153
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.74 E-value=5.3e-17 Score=101.07 Aligned_cols=108 Identities=33% Similarity=0.385 Sum_probs=84.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV------ 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------ 74 (112)
+.+|||+|+++|..+++.++.+++++++++|.+. ..+.+....|...+..... ...|+++++||+|+.....
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~ 134 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEIL 134 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHH
Confidence 7899999999999999999999999999999999 5566667889988877643 4689999999999976532
Q ss_pred ------ccHHHHHHHHHHh---CCcEEEeecC--CCCChhHHhhhhc
Q psy785 75 ------VGKEQGASLARAF---ACTFLETSAK--AKVNSWLCVECTN 110 (112)
Q Consensus 75 ------~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~v~~~~~~l~ 110 (112)
.........+... ...++++|++ .+.++.++|..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~ 181 (219)
T COG1100 135 NQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181 (219)
T ss_pred hhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHH
Confidence 2222222222222 3358999999 9999999998764
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.73 E-value=7.1e-17 Score=94.92 Aligned_cols=107 Identities=24% Similarity=0.407 Sum_probs=82.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ-STFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+.+|||||+.++..++..+.+++++++.++|.... .++.... .|...+...... +.|+++++||+|+.... .....
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~ 129 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHV 129 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHH
Confidence 67899999999999999999999999999999877 6666554 676666665433 78999999999996533 22222
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
...+......+++++||++|.|+.++|+++.
T Consensus 130 ~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 130 AFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 2233333356899999999999999998863
No 155
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.73 E-value=6.1e-17 Score=113.32 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=78.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||+.+|...+..+++.+|++++|+|+++....+....|.... . .++|+++|+||+|+.+... .....
T Consensus 76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~--~~v~~ 148 (600)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADP--ERVKQ 148 (600)
T ss_pred EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccH--HHHHH
Confidence 689999999999988999999999999999998865555555554332 1 4689999999999864221 22233
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++...+++ +++++||++|.|+.++++++.+
T Consensus 149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~ 181 (600)
T PRK05433 149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVE 181 (600)
T ss_pred HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 44444555 3899999999999999998864
No 156
>KOG0072|consensus
Probab=99.73 E-value=2.7e-17 Score=94.77 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=83.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH--
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE-- 78 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-- 78 (112)
++++||.+|+-.....|+.||.+.|++|+|+|.++.+.+.-....+-.+.+..+..+..+++++||+|....-..++.
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~ 142 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLK 142 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHH
Confidence 479999999999999999999999999999999998866555455555555555566788999999998642211111
Q ss_pred -HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 -QGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 -~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
......+..-+.++++||.+|.|+++..+||.+
T Consensus 143 ~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~ 176 (182)
T KOG0072|consen 143 MLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQR 176 (182)
T ss_pred HhChHHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence 111122333479999999999999999999864
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=8e-17 Score=95.17 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=71.2
Q ss_pred ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||...+.. .+...++++|++++++|..+..+.... .....+.+ .+.|+++++||+|+.+..
T Consensus 47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChH
Confidence 67999999887543 334567899999999999765433322 11222222 358999999999986533
Q ss_pred cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhccC
Q psy785 74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
.. .......+. +++++||++|.|++++++++.++
T Consensus 122 ~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 122 DE-----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HH-----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 21 222334566 88999999999999999998753
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=2.1e-16 Score=106.55 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=80.1
Q ss_pred ceEEeCCCccc----chhhHH---hhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ----FTAMRD---LYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
+.+|||||... ...+.. .++++++++++|+|+++. ++++.+..|..++..+... .++|.++|+||+|+.
T Consensus 208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 68999999642 112333 345679999999999865 6778888888888776432 478999999999984
Q ss_pred CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. .+....+.+.++.+++++||+++.|++++++++.+
T Consensus 288 ~~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~ 324 (424)
T PRK12297 288 EA----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAE 324 (424)
T ss_pred CC----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 21 33445566666788999999999999999998753
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.72 E-value=1.4e-16 Score=102.30 Aligned_cols=103 Identities=14% Similarity=-0.013 Sum_probs=72.9
Q ss_pred ceEEeCCCcccc-hh-------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQF-TA-------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.||||||.... .. ....+++++|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+..
T Consensus 50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~ 123 (270)
T TIGR00436 50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKD 123 (270)
T ss_pred EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHH
Confidence 679999997542 11 2344678999999999998876654 334444433 468999999999986422
Q ss_pred cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. .......++...++ +++++||++|.|++++++.+.+
T Consensus 124 ~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 124 K-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred H-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 2 12333444444455 8999999999999999998764
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.9e-16 Score=97.05 Aligned_cols=107 Identities=17% Similarity=0.012 Sum_probs=69.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKE 78 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 78 (112)
++.+|||||+..+..........+|++++|+|.++.........+. +... .+.|+++++||+|+...... ..+
T Consensus 69 ~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~ 143 (192)
T cd01889 69 QITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIE 143 (192)
T ss_pred eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHH
Confidence 3689999999765333333456789999999998754333322222 1121 35799999999998642221 122
Q ss_pred HHHHHH-HH------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 79 QGASLA-RA------FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 79 ~~~~~~-~~------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+..+.. .. .+++++++||++|.|++++++.+.+|
T Consensus 144 ~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 144 KMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 222211 11 25689999999999999999988764
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=9.5e-17 Score=109.98 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=72.1
Q ss_pred ceEEeCCCcc----------cchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTE----------QFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||.. .|..+. ..+++++|++++|+|+++..+.+.+. ++..+.. .++|+++|+||+|+.
T Consensus 261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLV 335 (472)
T ss_pred EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccC
Confidence 5799999953 333332 23578999999999999988777663 4444433 568999999999996
Q ss_pred Ccccc--cHHHHHH-HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVV--GKEQGAS-LARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.... ...+... +......+++++||++|.|++++|+.+.+
T Consensus 336 ~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~ 379 (472)
T PRK03003 336 DEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALET 379 (472)
T ss_pred ChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 42211 0111111 11112358999999999999999998753
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.70 E-value=2.1e-16 Score=110.31 Aligned_cols=101 Identities=21% Similarity=0.217 Sum_probs=72.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.||||||+++|..++...+..+|++++|+|+++...-+....+ .... ..++|+++++||+|+.+. ..+...
T Consensus 137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~----~~~vPiIVviNKiDl~~~---~~e~v~ 208 (587)
T TIGR00487 137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAK----AANVPIIVAINKIDKPEA---NPDRVK 208 (587)
T ss_pred EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHH----HcCCCEEEEEECcccccC---CHHHHH
Confidence 68999999999999998889999999999998763222222122 1121 246899999999998532 122222
Q ss_pred HHHHH-------hC--CcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARA-------FA--CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~-------~~--~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..... ++ .+++++||++|.|+.++++++.
T Consensus 209 ~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 209 QELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred HHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhh
Confidence 22222 22 4799999999999999999874
No 163
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.70 E-value=2.5e-16 Score=95.65 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=76.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 79 (112)
+.+|||||+.++...+..+++++|++++|+|.+.+.+.... .++..+.. .+.|+++++||+|+...... ....
T Consensus 64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~ 138 (189)
T cd00881 64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLRE 138 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHH
Confidence 68999999999988888999999999999999876544322 33333332 56899999999998752221 1122
Q ss_pred HHHHHHH--------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARA--------------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~--------------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+..+. ...+++++||++|.|++++++++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 139 IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 2232222 2468999999999999999998764
No 164
>KOG0096|consensus
Probab=99.70 E-value=1.2e-17 Score=100.00 Aligned_cols=106 Identities=29% Similarity=0.481 Sum_probs=90.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+..|||+|++.+..+...+|=+..+.+++||++..-.+.++.+|-.++.+.+ .++|++++|||.|...+.. ..+..
T Consensus 61 f~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~--k~k~v 136 (216)
T KOG0096|consen 61 FNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKV--KAKPV 136 (216)
T ss_pred EEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccc--ccccc
Confidence 6789999999999999999999999999999999999999999999998876 5699999999999865431 22333
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+..++.++++||+++.|.+..|.++..
T Consensus 137 ~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 137 SFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred eeeecccceeEEeecccccccccchHHHhh
Confidence 455566889999999999999999998863
No 165
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.70 E-value=2.4e-16 Score=104.38 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=73.1
Q ss_pred ceEEeCCCcc---------cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTE---------QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.+|||||.. .|...+ ..+.++|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+.
T Consensus 239 i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 239 VLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred EEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh
Confidence 6899999972 232222 2478999999999999988877776665555443 2346899999999998642
Q ss_pred ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ... .....+++++||++|.|++++++++.+
T Consensus 317 ~~v-----~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 317 PRI-----ERL-EEGYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred HhH-----HHH-HhCCCCEEEEEccCCCCHHHHHHHHHh
Confidence 221 111 112346899999999999999998864
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.69 E-value=3.8e-16 Score=103.10 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=70.1
Q ss_pred CceEEeCCCccc-chhhH-------HhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 1 MLEILDTAGTEQ-FTAMR-------DLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~-~~~~~-------~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
++.||||||+.+ +..+. ...++++|++++|+|..+ ++.... .|+..+.. .+.|+++|+||+|+.+
T Consensus 101 qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 101 QVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIES 174 (339)
T ss_pred EEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCcc
Confidence 368999999853 22222 124779999999999765 333332 34444443 3468889999999864
Q ss_pred cccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. ......+.+...+ .+++++||++|.|++++++++.+
T Consensus 175 ~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~ 213 (339)
T PRK15494 175 K---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITS 213 (339)
T ss_pred c---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHH
Confidence 2 2334445554443 48999999999999999999864
No 167
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.69 E-value=3e-16 Score=106.53 Aligned_cols=97 Identities=23% Similarity=0.219 Sum_probs=73.1
Q ss_pred ceEEeCCCcccchhh--------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAM--------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||+.++... ...+++++|++++|+|.+++.+.+.. |+..+.. .+.|+++|+||+|+.+.
T Consensus 253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~- 325 (442)
T TIGR00450 253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN- 325 (442)
T ss_pred EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-
Confidence 579999998765432 23578899999999999988877664 6655533 46899999999998642
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....+++..+.+++++||++ .||+++|+.+.+
T Consensus 326 -----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 326 -----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred -----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 11344556678899999998 688888887653
No 168
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.69 E-value=2.3e-16 Score=110.35 Aligned_cols=102 Identities=20% Similarity=0.194 Sum_probs=75.6
Q ss_pred ceEEeCCCcccchhh------HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAM------RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||++++... .+.++ +++|++++|+|.++.+.. ..+..++.+ .++|+++++||+|+.+.+
T Consensus 43 i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 43 IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKK 115 (591)
T ss_pred EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhC
Confidence 689999999877542 34443 479999999999874321 123333332 468999999999986544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... .+.+.+.+..+++++++||++|.|++++++++.+
T Consensus 116 ~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 116 GIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred CCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 443 3456777888999999999999999999998753
No 169
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=9.9e-16 Score=91.47 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=79.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++++|||||+||..+|+.+.+++++.++++|.+.+..+ .....+..+.. . ..+|+++++||+|+.+.. ++++.+
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~--~~ip~vVa~NK~DL~~a~--ppe~i~ 143 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-R--NPIPVVVAINKQDLFDAL--PPEKIR 143 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-c--cCCCEEEEeeccccCCCC--CHHHHH
Confidence 68999999999999999999999999999999998877 22233332222 1 239999999999997533 345555
Q ss_pred HHHHH--hCCcEEEeecCCCCChhHHhhhhc
Q psy785 82 SLARA--FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.... ...+.++++|.++.+..+.+..+.
T Consensus 144 e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 144 EALKLELLSVPVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred HHHHhccCCCceeeeecccchhHHHHHHHHH
Confidence 54443 378999999999999988887664
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=4.9e-16 Score=105.35 Aligned_cols=103 Identities=22% Similarity=0.211 Sum_probs=70.5
Q ss_pred ceEEeCCCcccchhh-----------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAM-----------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.++... ...+++++|++++|+|+++..+.+... +...+.+ .++|+++|+||+|+.
T Consensus 222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccC
Confidence 679999997543321 123678999999999999876665542 3333332 468999999999997
Q ss_pred CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhc
Q psy785 71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
++.. ..+.... ....+ ..+++++||++|.|+.++|+++.
T Consensus 297 ~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 297 KDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred CCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 3211 1122222 22222 36899999999999999999875
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=5.3e-16 Score=106.05 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=76.3
Q ss_pred ceEEeCCCcccc----h---hhHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcC----------CCCCcE
Q psy785 2 LEILDTAGTEQF----T---AMRDLYMKNGQGFILVYSITAQ----STFNDLSDLREQILRVKD----------TDDVPM 60 (112)
Q Consensus 2 ~~i~Dt~g~~~~----~---~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~~----------~~~~p~ 60 (112)
|.+|||||.... . .....++++++++++|+|+++. ++++.+..|..++..+.. ...+|.
T Consensus 208 f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~ 287 (500)
T PRK12296 208 FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR 287 (500)
T ss_pred EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence 689999996321 1 1122357889999999999753 456666666666655542 246899
Q ss_pred EEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 61 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++|+||+|+.+.... .+.........+++++++||+++.|+++++.++.+
T Consensus 288 IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~e 337 (500)
T PRK12296 288 LVVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAE 337 (500)
T ss_pred EEEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999643332 12222333445789999999999999999998764
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=2.4e-16 Score=107.37 Aligned_cols=95 Identities=24% Similarity=0.213 Sum_probs=71.9
Q ss_pred ceEEeCCCcccchhh--------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAM--------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||++++... ...+++++|++++|+|.+++.+.+....|.. ..+.|+++|+||+|+.+..
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccc
Confidence 689999998765432 2336789999999999998877765544432 2468999999999996433
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ...+.+++++||++|.|++++++++.+
T Consensus 338 ~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~ 367 (449)
T PRK05291 338 DLE--------EENGKPVIRISAKTGEGIDELREAIKE 367 (449)
T ss_pred hhh--------hccCCceEEEEeeCCCCHHHHHHHHHH
Confidence 221 234568999999999999999998753
No 173
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=5.7e-16 Score=106.19 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=70.2
Q ss_pred ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||++. +...+..+++++|++++|+|+++..+... ..|...+.. .++|+++|+||+|+....
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~ 162 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE 162 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc
Confidence 67999999763 33445667899999999999998755432 233333332 468999999999985321
Q ss_pred cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
......+ ..++ ..+++||++|.|++++|+++++
T Consensus 163 ---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~ 196 (472)
T PRK03003 163 ---ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLA 196 (472)
T ss_pred ---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHh
Confidence 1111122 2344 5679999999999999998864
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.67 E-value=8.6e-16 Score=109.07 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=73.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.||||||++.|..++...+..+|++++|+|+++....+....| ..+. ..++|+++++||+|+.+.. .....
T Consensus 297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~~~k----~~~iPiIVViNKiDl~~~~---~e~v~ 368 (742)
T CHL00189 297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-NYIQ----AANVPIIVAINKIDKANAN---TERIK 368 (742)
T ss_pred EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-HHHH----hcCceEEEEEECCCccccC---HHHHH
Confidence 68999999999999999999999999999998774222222222 1122 2568999999999986422 12211
Q ss_pred HH-------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785 82 SL-------ARAFA--CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 82 ~~-------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+. ...++ ++++++||++|.|+.++++.+.
T Consensus 369 ~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 369 QQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred HHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 11 22233 6899999999999999999875
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.66 E-value=1.8e-15 Score=92.54 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=73.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~ 79 (112)
.+.++||||+.+|.......++.+|++++|+|+.+...... ...+..+.. .++|++++.||+|+...+. ...++
T Consensus 71 ~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~ 145 (188)
T PF00009_consen 71 KITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEE 145 (188)
T ss_dssp EEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHH
T ss_pred ceeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHHHHHH
Confidence 36899999999998877778999999999999986543332 222333333 5689999999999872111 00111
Q ss_pred HH-HHHHHhC------CcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GA-SLARAFA------CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~-~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. .+.+..+ ++++++||++|.|+.++++.+.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 11 2333332 47999999999999999998764
No 176
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.66 E-value=1e-15 Score=90.40 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=71.6
Q ss_pred ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||...+.. .....+.++|++++|+|++++.+......+.. ..+.|+++++||+|+.+..
T Consensus 51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc
Confidence 67999999765532 12345779999999999998776665443322 2568999999999987533
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. .....+.+++++||+++.|+.++++++.+
T Consensus 124 ~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 124 EL-------LSLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred cc-------ccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 32 22334568999999999999999998764
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.5e-15 Score=108.54 Aligned_cols=101 Identities=24% Similarity=0.256 Sum_probs=72.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~ 77 (112)
+.||||||++.|..++...++.+|++++|+|+++. .+.+. | ..+ ...++|+++++||+|+..... ...
T Consensus 339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~---i-~~a----~~~~vPiIVviNKiDl~~a~~e~V~ 410 (787)
T PRK05306 339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA---I-NHA----KAAGVPIIVAINKIDKPGANPDRVK 410 (787)
T ss_pred EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH---H-HHH----HhcCCcEEEEEECccccccCHHHHH
Confidence 68999999999999998889999999999999873 33332 2 111 225689999999999864211 001
Q ss_pred HHHH---HHHHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785 78 EQGA---SLARAFA--CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 78 ~~~~---~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..+. .+...++ ++++++||++|.|++++++.+.
T Consensus 411 ~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 411 QELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred HHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhh
Confidence 1111 1223333 6899999999999999999875
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.65 E-value=1.6e-15 Score=106.08 Aligned_cols=101 Identities=18% Similarity=0.125 Sum_probs=75.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV-- 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~-- 75 (112)
+.||||||+++|.......+.++|++++|+|+++ +.+.+.+. .+.. .++| +++++||+|+.+....
T Consensus 52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~----lgi~~iIVVlNK~Dlv~~~~~~~ 123 (581)
T TIGR00475 52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL----LGIPHTIVVITKADRVNEEEIKR 123 (581)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCCCCCHHHHHH
Confidence 6899999999998888888899999999999987 34444332 1221 3567 9999999999753322
Q ss_pred cHHHHHHHHHHh----CCcEEEeecCCCCChhHHhhhhc
Q psy785 76 GKEQGASLARAF----ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 76 ~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..++..++.... +++++++||++|.|++++++.+.
T Consensus 124 ~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~ 162 (581)
T TIGR00475 124 TEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELK 162 (581)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHH
Confidence 123344444443 46899999999999999998764
No 179
>KOG0074|consensus
Probab=99.65 E-value=2.5e-16 Score=90.64 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=85.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.+||.+||...+..|..||.+.|++|+|+|.++..-|+.+..-+.++.+.......|+.+.+||.|+...... ++..
T Consensus 63 ~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia 141 (185)
T KOG0074|consen 63 HLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIA 141 (185)
T ss_pred EEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHH
Confidence 478999999999999999999999999999999999999988777777776655578999999999998643222 1111
Q ss_pred HH----HHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 81 AS----LARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.. -.+...+.+.++||.++.|+.....|+.
T Consensus 142 ~klnl~~lrdRswhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 142 LKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred HhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence 11 1223356889999999999888777654
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.65 E-value=2.1e-15 Score=88.65 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=74.3
Q ss_pred ceEEeCCCcccchh-------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTA-------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+.+|||||+..+.. .....++++|++++++|.+...+..... +...... .+.|+++++||+|+.....
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhh
Confidence 68999999776543 4445788999999999999887665543 3333322 5789999999999875332
Q ss_pred ccHHH---HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 75 VGKEQ---GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ~~~~~---~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..... ........+.+++++||+++.|+.++++++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 21111 11122223569999999999999999998864
No 181
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.6e-15 Score=99.45 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=79.0
Q ss_pred ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSIT---AQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
+.|+||||..+- ......++++++++++|+|++ ..++++.+..|..++..+... .++|.++|+||+|+.
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 689999997531 112223688999999999988 456777777888877765322 468999999999986
Q ss_pred CcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.... .+....+.+..+ .+++++||+++.|++++++.+.+
T Consensus 289 ~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 289 DEEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred ChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHH
Confidence 53332 233444545444 37899999999999999998764
No 182
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.64 E-value=3.7e-15 Score=104.05 Aligned_cols=101 Identities=23% Similarity=0.158 Sum_probs=71.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV---- 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---- 74 (112)
+.||||||++.|..++..+++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.+...
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~----~~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YKTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH----cCCCEEEEEECCCccchhhhccC
Confidence 6799999999999999999999999999999987 445544322 222 4689999999999863110
Q ss_pred --------ccHHHH------------HHHHH------------Hh--CCcEEEeecCCCCChhHHhhhhc
Q psy785 75 --------VGKEQG------------ASLAR------------AF--ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 75 --------~~~~~~------------~~~~~------------~~--~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
...... .++.. ++ ..+++++||++|.|++++..++.
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 000000 01110 11 25899999999999999998764
No 183
>KOG1673|consensus
Probab=99.63 E-value=2e-15 Score=88.15 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=86.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--cc---cc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--RV---VG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--~~---~~ 76 (112)
+.+||.+|++++..+.+..-.++-+++++||.+.+.+++++..|+.+....+. ..+| ++||+|.|.--. ++ ..
T Consensus 71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk-tAiP-ilvGTKyD~fi~lp~e~Q~~I 148 (205)
T KOG1673|consen 71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK-TAIP-ILVGTKYDLFIDLPPELQETI 148 (205)
T ss_pred EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC-ccce-EEeccchHhhhcCCHHHHHHH
Confidence 67999999999998888888999999999999999999999999999877542 3455 567999996311 11 11
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785 77 KEQGASLARAFACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
...++.+++-.+.+.+++|+..+.||..+|+-+
T Consensus 149 ~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~v 181 (205)
T KOG1673|consen 149 SRQARKYAKVMNASLFFCSTSHSINVQKIFKIV 181 (205)
T ss_pred HHHHHHHHHHhCCcEEEeeccccccHHHHHHHH
Confidence 234566777788999999999999999999764
No 184
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=2.6e-15 Score=101.27 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=72.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 79 (112)
+.+|||||+++|...+......+|++++|+|+++..........+..+.. . ...|+++++||+|+.+.... ...+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 68999999999987777778899999999999864211111122222221 1 22478999999998753221 1122
Q ss_pred HHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++.... +++++++||++|.|+++++++|.+
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~ 193 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEK 193 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence 33333332 568999999999999999998864
No 185
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.63 E-value=1.1e-15 Score=103.68 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=68.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNKCDLEEERV---- 74 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---- 74 (112)
++.||||||+++|.......++++|++++|+|+++.++... ...+. .+.+.. ...|+++++||+|+.+...
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHHHH
Confidence 36899999999887666666789999999999988743211 11111 122221 2357889999999963211
Q ss_pred ccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785 75 VGKEQGASLARAFA-----CTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 75 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 106 (112)
....+..++++..+ ++++++||++|.|+.+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11234445555554 579999999999998643
No 186
>PRK11058 GTPase HflX; Provisional
Probab=99.62 E-value=7.9e-15 Score=99.28 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=71.7
Q ss_pred ceEEeCCCcccc--hhhHH------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQF--TAMRD------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||..+. ..++. ..++++|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+..
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCch
Confidence 579999997432 22222 2468999999999999988777765544433332 22468999999999986421
Q ss_pred cccHHHHHHHHHHhCCc-EEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACT-FLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. .... ....+.+ ++++||++|.|++++++++.+
T Consensus 326 ~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 326 E---PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred h---HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 1 1111 1123555 588999999999999998864
No 187
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.62 E-value=5.8e-15 Score=99.71 Aligned_cols=106 Identities=22% Similarity=0.140 Sum_probs=69.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 78 (112)
+.||||||+++|......-..++|++++|+|++++. .-+....+ ..+.. . ...|+++++||+|+.+..... .+
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDI-I--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHH-c--CCCcEEEEEEeeccccchhHHHHHH
Confidence 689999999988665555556789999999998542 11111111 11221 1 224689999999986532211 12
Q ss_pred HHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...+.... +.+++++||++|.|++++++.+.+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 198 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE 198 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 233333322 468999999999999999998764
No 188
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.62 E-value=2.4e-14 Score=85.64 Aligned_cols=105 Identities=21% Similarity=0.195 Sum_probs=70.2
Q ss_pred ceEEeCCCcccc----------h-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQF----------T-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~----------~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||..+. . ......++++|++++|+|.+++.+.... .+...+.. .+.|+++++||+|+.
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLV 126 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccC
Confidence 579999996432 1 1112356799999999999888665443 23233222 458999999999987
Q ss_pred CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..........+ ..+.. ..+++++||+++.|+.++++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 127 EKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 543222222222 22223 358999999999999999998753
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.60 E-value=1.4e-14 Score=98.41 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=69.6
Q ss_pred ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++|||||++. +......+++++|++++|+|..+..+.. .+..|+.. .++|+++|+||+|+.+
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~ 123 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPD 123 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCcc
Confidence 78999999887 2233455688999999999998753332 23344332 3689999999999753
Q ss_pred cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. .....++ ..+++ .++++||++|.|+.++++.+.+
T Consensus 124 ~----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 124 E----EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred c----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 1 1222222 34566 5899999999999999998764
No 190
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.60 E-value=1.9e-14 Score=89.35 Aligned_cols=101 Identities=22% Similarity=0.062 Sum_probs=65.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc----c
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV----G 76 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~----~ 76 (112)
.+.+|||||+++|...+...++.+|++++|+|++....-+.. .... +.... ...++++|+||+|+.+.... .
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i 153 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLL--GIRHVVVAVNKMDLVDYSEEVFEEI 153 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHc--CCCcEEEEEEchhcccCCHHHHHHH
Confidence 368999999998876666678999999999999865322211 1111 11211 12357778999998642211 1
Q ss_pred HHHHHHHHHHhCC---cEEEeecCCCCChhHH
Q psy785 77 KEQGASLARAFAC---TFLETSAKAKVNSWLC 105 (112)
Q Consensus 77 ~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~~ 105 (112)
..+..++.+.+++ +++++||++|.|+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1233444455553 5899999999998764
No 191
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.59 E-value=3.8e-15 Score=84.66 Aligned_cols=65 Identities=31% Similarity=0.627 Sum_probs=53.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH---HHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD---LREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~---~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+++||++|++.+...+...+.++|++++|||.+++.+++.+.. |+..+... ..++|+++|+||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 5799999999988877778999999999999999999988754 55555543 25599999999998
No 192
>PRK00089 era GTPase Era; Reviewed
Probab=99.59 E-value=1.6e-14 Score=93.67 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=70.8
Q ss_pred ceEEeCCCcccch--------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFT--------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||..... ......+.++|++++|+|+++..+- ........+. ..+.|+++|+||+|+...+
T Consensus 55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~~~~pvilVlNKiDl~~~~ 129 (292)
T PRK00089 55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLK----KVKTPVILVLNKIDLVKDK 129 (292)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh----hcCCCEEEEEECCcCCCCH
Confidence 6799999965432 2333457899999999999873211 1112222222 2458999999999997433
Q ss_pred cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.........+....+ .+++++||+++.|++++++++.+
T Consensus 130 ~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 130 EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 322334445555444 48999999999999999998764
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=1.2e-14 Score=101.69 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=77.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-cHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-GKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~ 79 (112)
++.+|||||+.+|...+...++.+|++++|+|+++. .......|+..+.. .++|+++++||+|+...+.. ...+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~e 139 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDE 139 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHH
Confidence 378999999999998889999999999999999763 23334456555554 46899999999998643211 1222
Q ss_pred HHHHHH-------HhCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785 80 GASLAR-------AFACTFLETSAKAKV----------NSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~-------~~~~~~~~~Sa~~~~----------~v~~~~~~l~~ 111 (112)
...+.. ...++++++||++|. |+..+|+.+.+
T Consensus 140 i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~ 188 (594)
T TIGR01394 140 VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVR 188 (594)
T ss_pred HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHH
Confidence 233322 235689999999996 78888887764
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.58 E-value=9e-15 Score=99.21 Aligned_cols=104 Identities=16% Similarity=0.076 Sum_probs=66.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----cc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV----VG 76 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~----~~ 76 (112)
++.||||||+++|.......++++|++++|+|++++.++.....+...+.... ...|+++++||+|+.+... ..
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHH
Confidence 36899999999886545455789999999999986312211111111122211 2246899999999864211 11
Q ss_pred HHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785 77 KEQGASLARAFA-----CTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 77 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 106 (112)
.++..++....+ ++++++||++|.|+.++.
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 233444454444 479999999999998744
No 195
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.57 E-value=4e-14 Score=84.00 Aligned_cols=105 Identities=17% Similarity=0.049 Sum_probs=71.0
Q ss_pred ceEEeCCCcccchh--------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA--------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||...... .....+.++|++++++|.+++.+- ....+...+.. .+.|+++++||+|+....
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK----SKTPVILVLNKIDLVKDK 127 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----hCCCEEEEEEchhccccH
Confidence 57999999764322 334457899999999999886211 11122233332 358999999999986433
Q ss_pred cccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....+....+....+ .+++++|++++.|++++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 128 EDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 222333334444443 58999999999999999998865
No 196
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.57 E-value=2.3e-14 Score=89.62 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=64.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc-
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE- 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~- 72 (112)
.+.+|||||+.+|...+...++.+|++++|+|+++.. ..+....| ... .. ....|+++++||+|+...
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RT--LGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HH--cCCCeEEEEEEcccccccc
Confidence 3689999999888766666678899999999998742 11122222 111 11 123688899999998631
Q ss_pred -cccc----HHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785 73 -RVVG----KEQGASLARAFA-----CTFLETSAKAKVNSWL 104 (112)
Q Consensus 73 -~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 104 (112)
.... .+.+.......+ ++++++||++|.|+.+
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 1111 112222333333 5799999999999874
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=5.3e-14 Score=100.54 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=68.2
Q ss_pred ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||.+. +......+++.+|++++|+|.++.-.... ..|...+.. .++|+++|+||+|+....
T Consensus 325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~ 399 (712)
T PRK09518 325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE 399 (712)
T ss_pred EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch
Confidence 68999999763 23344556889999999999976422111 134444433 568999999999985321
Q ss_pred cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....++ ...+. ..+++||++|.|+.++++++.+
T Consensus 400 ----~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 400 ----YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred ----hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 111222 22344 5689999999999999998764
No 198
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=6.1e-14 Score=98.62 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=71.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG- 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~- 76 (112)
+.||||||+++|.......+.++|++++|+|++.. .+.+.+ ..+.. .++| +++|+||+|+.+.....
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl----~il~~----lgi~~iIVVlNKiDlv~~~~~~~ 124 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL----AILQL----TGNPMLTVALTKADRVDEARIAE 124 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH----HHHHH----cCCCeEEEEEECCccCCHHHHHH
Confidence 57999999999976666678899999999998763 333332 11221 2355 57899999986532221
Q ss_pred -HHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785 77 -KEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 77 -~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++....+ .+++++||++|.|++++++.+.+
T Consensus 125 v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 125 VRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 223334444434 58999999999999999998753
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=3.7e-14 Score=101.31 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=70.3
Q ss_pred ceEEeCCCccc----------chhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ----------FTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~----------~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.+ |..+. ...++++|++++|+|+++..+.+.... ...+.. .++|+++|+||+|+.
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL~ 574 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDLM 574 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhcC
Confidence 57999999642 22222 234789999999999998877776543 333333 468999999999996
Q ss_pred CcccccHHHHHH-HHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGAS-LARAF----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... .+...+ +...+ ..+++++||++|.|++++++.+.+
T Consensus 575 ~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 575 DEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred ChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4321 112222 22221 237899999999999999998753
No 200
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.55 E-value=7.6e-14 Score=94.72 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=70.3
Q ss_pred ceEEeCCCc--------ccchhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGT--------EQFTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.+|||||. +.+......+++++|++++|+|.....+.. .+..|+ .+ .++|+++|+||+|+.+
T Consensus 49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l---~~----~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWL---RK----SGKPVILVANKIDGKK 121 (429)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH---HH----hCCCEEEEEECccCCc
Confidence 689999996 334455666789999999999997653332 233333 22 3589999999999864
Q ss_pred cccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.... . .....+++ +++++||+.|.|+.++++.+.+
T Consensus 122 ~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~ 157 (429)
T TIGR03594 122 EDAV----A-AEFYSLGFGEPIPISAEHGRGIGDLLDAILE 157 (429)
T ss_pred cccc----H-HHHHhcCCCCeEEEeCCcCCChHHHHHHHHH
Confidence 3321 1 12345677 8999999999999999998753
No 201
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.54 E-value=9.3e-14 Score=84.32 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=62.5
Q ss_pred ceEEeCCCcc----------cchhhHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTE----------QFTAMRDLYMK---NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~----------~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.+|||||.. .+..+...+++ .++++++++|.+++-+..... ++..+.. .++|+++++||+|
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D 140 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKAD 140 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcc
Confidence 6899999942 34444445554 468999999998754444332 2222222 4689999999999
Q ss_pred CCCcccc--cHHHHHHHHHHhC--CcEEEeecCCCCChh
Q psy785 69 LEEERVV--GKEQGASLARAFA--CTFLETSAKAKVNSW 103 (112)
Q Consensus 69 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~ 103 (112)
+.+.... ..++.++.....+ .+++++||++|.|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 8643221 1233344444433 489999999999974
No 202
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.54 E-value=1.2e-13 Score=84.61 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred ceEEeCCCc----------ccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGT----------EQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.+|||||. +++..+...+++. ++++++++|.+.+.+.... .....+.. .++|+++++||+|
T Consensus 72 l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~D 146 (196)
T PRK00454 72 LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKAD 146 (196)
T ss_pred EEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcc
Confidence 679999994 3445555555554 4678888998765433221 11111221 4689999999999
Q ss_pred CCCccccc--HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 69 LEEERVVG--KEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..... .....+.......+++++||+++.|++++++.+.+
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 191 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAK 191 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHH
Confidence 86533211 12233333333579999999999999999998753
No 203
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=6.7e-14 Score=86.61 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=57.5
Q ss_pred ceEEeCCCcccchhhHHhhcccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNG-QGFILVYSITAQ-STFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~ 71 (112)
+++|||||++++...+..+++++ +++|+|+|+++. .++.....|+..+..... ..++|+++++||+|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 68999999999988888899998 999999999987 677777777665544322 15799999999999864
No 204
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.53 E-value=2e-13 Score=99.98 Aligned_cols=101 Identities=23% Similarity=0.234 Sum_probs=70.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-- 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 76 (112)
+.||||||++.|..+....+..+|++++|+|+++ +.+++.+. .+.. .++|+++++||+|+.+....+
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~ 599 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISED 599 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccc
Confidence 6899999999998888888889999999999986 44444432 2222 358999999999985321100
Q ss_pred --------------HHHHH----HH----H------------HHh--CCcEEEeecCCCCChhHHhhhhc
Q psy785 77 --------------KEQGA----SL----A------------RAF--ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 77 --------------~~~~~----~~----~------------~~~--~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..+.. +. . +++ ..+++++||++|.|++++...+.
T Consensus 600 ~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 600 EPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 00110 00 0 111 24899999999999999998764
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.53 E-value=1.5e-13 Score=96.25 Aligned_cols=101 Identities=22% Similarity=0.184 Sum_probs=70.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--c
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--G 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 76 (112)
+.||||||+++|..++...++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+...... .
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCEEEEEECcCCchhhhhhcC
Confidence 5799999999999988888899999999999987 555554432 222 46899999999998521000 0
Q ss_pred --------------HHH-------HHHHHHHh---------------CCcEEEeecCCCCChhHHhhhhc
Q psy785 77 --------------KEQ-------GASLARAF---------------ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 77 --------------~~~-------~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
... ......+. ..+++++||++|.|+.++++.+.
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 000 00011111 24789999999999999887653
No 206
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.52 E-value=5.5e-14 Score=83.36 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=67.3
Q ss_pred ceEEeCCCcccch------hhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFT------AMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
++++|+||..... ...+.++ ..+|+++.|+|.++.+.-.. ...++.+ .++|++++.||+|...++
T Consensus 49 ~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 49 VELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY---LTLQLLE----LGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp EEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH---HHHHHHH----TTSSEEEEEETHHHHHHT
T ss_pred EEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH---HHHHHHH----cCCCEEEEEeCHHHHHHc
Confidence 6899999954322 2333343 58999999999987543222 2333444 469999999999986544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
.... ....+.+.+++|++++||+++.|++++++.+
T Consensus 122 g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 122 GIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred CCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 4322 3566777889999999999999999998764
No 207
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.52 E-value=8e-14 Score=94.80 Aligned_cols=103 Identities=23% Similarity=0.220 Sum_probs=69.1
Q ss_pred ceEEeCCCcccc----------hhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQF----------TAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~----------~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||..+. ... ...+++.+|++++|+|++++.+.++.. +...+.+ .+.|+++++||+|+.
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLV 297 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCC
Confidence 679999996432 211 223678999999999999876665542 2333332 468999999999987
Q ss_pred CcccccHHHHHHHHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785 71 EERVVGKEQGASLARA----FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.... .+........ ...+++++||++|.|+.++++.+.
T Consensus 298 ~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 298 DEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred CHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 42211 1111112222 246999999999999999998764
No 208
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.52 E-value=4.8e-13 Score=83.94 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=67.4
Q ss_pred ceEEeCCCcccchhhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--H
Q psy785 2 LEILDTAGTEQFTAMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 77 (112)
+.+.||||+++|.......+ ..+|++++|+|+.....-. ...++..+.. .++|++++.||+|+.+..... .
T Consensus 86 i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 86 VTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA----LNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred EEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHH
Confidence 67999999998855333333 3689999999987643322 2233333333 458999999999986432211 1
Q ss_pred HHHHHHHHH--------------------------hCCcEEEeecCCCCChhHHhhhhc
Q psy785 78 EQGASLARA--------------------------FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+..+.... ...|++.+||.+|.|++++.+.|.
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 111222110 123899999999999999988764
No 209
>KOG0462|consensus
Probab=99.51 E-value=1.5e-13 Score=93.73 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=79.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++++||||+.+|.......+.-|+|+++|+|.+..---+.+.+++..+. .+..+|.|.||+|++..+. +....
T Consensus 127 LNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adp--e~V~~ 199 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADP--ERVEN 199 (650)
T ss_pred EEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCH--HHHHH
Confidence 6899999999998888888899999999999988765666666555543 4688999999999975332 22222
Q ss_pred HHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFA---CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...-++ -+.+.+||++|.|++++++++++
T Consensus 200 q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~ 232 (650)
T KOG0462|consen 200 QLFELFDIPPAEVIYVSAKTGLNVEELLEAIIR 232 (650)
T ss_pred HHHHHhcCCccceEEEEeccCccHHHHHHHHHh
Confidence 3333333 38999999999999999999875
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.51 E-value=2.3e-13 Score=97.64 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=75.0
Q ss_pred ceEEeCCCcccchhh----------HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAM----------RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~----------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+++|||||+.++... .+.++ ..+|++++|+|.++.+... .|..++.+ .++|+++++||+|+
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl 124 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDI 124 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhh
Confidence 689999998876421 22232 4899999999998754322 24344443 46899999999998
Q ss_pred CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+.+.. ....+++.+.++++++++||++|.|++++.+.+.
T Consensus 125 ~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~ 164 (772)
T PRK09554 125 AEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAID 164 (772)
T ss_pred hhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence 654443 3455677788899999999999999999988764
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.51 E-value=4.2e-13 Score=94.17 Aligned_cols=106 Identities=17% Similarity=0.104 Sum_probs=73.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~ 79 (112)
++++|||||+.+|...+..+++.+|++++|+|+++....+. ..++..+.. .++|.++++||+|+..... ....+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~e 143 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQ 143 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHH
Confidence 36899999999999999999999999999999986432222 233333333 4689999999999864221 11222
Q ss_pred HHHHHHH-------hCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785 80 GASLARA-------FACTFLETSAKAKV----------NSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~-------~~~~~~~~Sa~~~~----------~v~~~~~~l~~ 111 (112)
....... ..++++++||++|. |+..+++.+++
T Consensus 144 i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~ 192 (607)
T PRK10218 144 VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVD 192 (607)
T ss_pred HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHH
Confidence 2332211 24789999999998 57777776653
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.48 E-value=4.7e-13 Score=83.35 Aligned_cols=64 Identities=28% Similarity=0.393 Sum_probs=50.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+++|......++..+|++++|+|.+...+... ..|+..... .++|+++++||+|+.
T Consensus 73 i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 73 FNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 6899999999998888888999999999999987665433 334443332 358999999999974
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=5e-13 Score=77.91 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=71.4
Q ss_pred eEEeCCCcc----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 3 EILDTAGTE----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 3 ~i~Dt~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
.++||||.- +++.-.-....+||.++++.|.+++.+.-. +.+. ...+.|+|-|+||+|+..+ ....+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa---~~f~~pvIGVITK~Dl~~~-~~~i~ 109 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFA---SMFNKPVIGVITKIDLPSD-DANIE 109 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhh---cccCCCEEEEEECccCccc-hhhHH
Confidence 468999933 333333344569999999999998753211 1111 1246899999999999732 22455
Q ss_pred HHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++.+..|+ ++|++|+.+|.|++++.++|.+
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHhC
Confidence 66677777787 7899999999999999998753
No 214
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=3.9e-13 Score=90.68 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=81.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
|+++||||+.+|.--....+..|.|.++++|.++.-.-+.+.+.+..+. .+..++-|.||+|++.... +...+
T Consensus 78 lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp--ervk~ 150 (603)
T COG0481 78 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP--ERVKQ 150 (603)
T ss_pred EEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH--HHHHH
Confidence 7899999999997767777889999999999998766677777666654 4578899999999975321 22333
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++..-.|+ ..+.+|||+|.||+++++.+++
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~ 183 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE 183 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence 44444565 6789999999999999999875
No 215
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.2e-12 Score=89.08 Aligned_cols=98 Identities=27% Similarity=0.280 Sum_probs=72.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.|.||||++.|..++..=..=+|.+++|+++++ |.+.+.+.. ++ ..+.|+++..||+|..+.. +.
T Consensus 57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak----~a~vP~iVAiNKiDk~~~n---p~ 125 (509)
T COG0532 57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK----AAGVPIVVAINKIDKPEAN---PD 125 (509)
T ss_pred EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH----HCCCCEEEEEecccCCCCC---HH
Confidence 6899999999999988766677899999999987 345554432 22 3679999999999987422 22
Q ss_pred HHH-HH------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785 79 QGA-SL------ARAFA--CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 79 ~~~-~~------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
... ++ ...++ ..++++||++|.|+.+++..+.
T Consensus 126 ~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 126 KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 222 21 12222 4799999999999999998764
No 216
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.46 E-value=8.6e-13 Score=82.64 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=50.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+++|.......++.+|++++|+|++.....+....| ..... .++|+++++||+|+.
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCCcc
Confidence 68999999999999899999999999999999876555432222 22222 458999999999975
No 217
>PRK12289 GTPase RsgA; Reviewed
Probab=99.46 E-value=5.6e-13 Score=88.33 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=69.6
Q ss_pred cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCc
Q psy785 12 QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACT 90 (112)
Q Consensus 12 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 90 (112)
+.+.+.+..+.++|.+++|+|+.++. +...+..|+..+.. .++|+++|+||+|+.+.... ..........+++
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~ 151 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQ 151 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCe
Confidence 34456667789999999999998775 44456777765533 56899999999999643221 2222333456889
Q ss_pred EEEeecCCCCChhHHhhhhcc
Q psy785 91 FLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 91 ~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++||+++.|++++++.+.+
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhcc
Confidence 999999999999999988764
No 218
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.43 E-value=4.4e-12 Score=78.09 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~ 77 (112)
+.|.||||+.+|.......+..+|++++|+|+.....-+. ...+..+.+ .++| ++++.||+|+....... .
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~ 141 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVE 141 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence 6799999999887766677889999999999876432221 222333333 4466 67889999986322211 1
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCCCh
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKVNS 102 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~v 102 (112)
++........+ .+++++||++|.|+
T Consensus 142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 142 MEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 23334444433 58999999999875
No 219
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.42 E-value=1.2e-12 Score=84.87 Aligned_cols=85 Identities=20% Similarity=0.085 Sum_probs=66.7
Q ss_pred cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCC
Q psy785 21 MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK 99 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 99 (112)
+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+... ...........+++++++||+++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 88999999999999887 88888888877654 4689999999999964321 12223334456889999999999
Q ss_pred CChhHHhhhhcc
Q psy785 100 VNSWLCVECTND 111 (112)
Q Consensus 100 ~~v~~~~~~l~~ 111 (112)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999887753
No 220
>PRK00098 GTPase RsgA; Reviewed
Probab=99.42 E-value=9.3e-13 Score=85.79 Aligned_cols=85 Identities=20% Similarity=0.094 Sum_probs=64.0
Q ss_pred ccCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCC
Q psy785 22 KNGQGFILVYSITAQSTFN-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV 100 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 100 (112)
.++|.+++|+|++++.+.. .+..|+..+.. .++|+++|+||+|+.+... ......+..+..+++++++||+++.
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 8999999999998876544 34677766543 5689999999999963222 1223334455668899999999999
Q ss_pred ChhHHhhhhcc
Q psy785 101 NSWLCVECTND 111 (112)
Q Consensus 101 ~v~~~~~~l~~ 111 (112)
|++++++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999987753
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.41 E-value=2.7e-12 Score=86.51 Aligned_cols=94 Identities=18% Similarity=0.176 Sum_probs=61.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~ 77 (112)
+.||||||+++|......-..++|++++|+|+......+.. ..+..+.. .++|.+ +++||+|+.+..... .
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~ 151 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE 151 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHH
Confidence 68999999998865555556788999999999863222221 22222332 357765 689999986532211 1
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCC
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKV 100 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~ 100 (112)
.+...+.+..+ ++++++||++|.
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 152 MEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHhcCCCccCccEEECcccccc
Confidence 23445555554 689999999875
No 222
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.41 E-value=4e-12 Score=80.25 Aligned_cols=47 Identities=32% Similarity=0.164 Sum_probs=36.3
Q ss_pred CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|+++|+||+|+.+ .++...++. ...++++||++|.|++++++.+.+
T Consensus 177 ~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 177 IPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHH
Confidence 69999999999853 233333433 346899999999999999998864
No 223
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.40 E-value=4.8e-12 Score=86.49 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=69.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 78 (112)
+.|+||||+++|......-+..+|++++|+|+.... .-+..+. +. +.... .-.|++++.||+|+.+..... .+
T Consensus 119 i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 119 VSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred EeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HH-HHHHc--CCCcEEEEEecccccCHHHHHHHHH
Confidence 579999999998666556677999999999998631 1111122 22 22211 124688999999987422211 11
Q ss_pred HHHHHHHH---hCCcEEEeecCCCCChhHHhhhhc
Q psy785 79 QGASLARA---FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 79 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+...+... .+.+++++||++|.|++.+++.|.
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~ 229 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYIC 229 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 22222222 256999999999999999998876
No 224
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=2.3e-12 Score=87.96 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFN-------DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~ 73 (112)
+.++||||+++|.......+..+|++++|+|+++. +++ .....+..+.. .++| +++++||+|+.+..
T Consensus 87 i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 87 CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCchh
Confidence 68999999999988888888999999999999862 222 22222222211 4565 68889999975211
Q ss_pred ------cccHHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785 74 ------VVGKEQGASLARAFA-----CTFLETSAKAKVNSWL 104 (112)
Q Consensus 74 ------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 104 (112)
....+++..++++.+ ++++++||++|.|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 011334555666555 5799999999999854
No 225
>PRK09866 hypothetical protein; Provisional
Probab=99.39 E-value=1.7e-11 Score=85.87 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=70.4
Q ss_pred CceEEeCCCccc-----chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 1 MLEILDTAGTEQ-----FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
++.|.||||... ........+.++|++++|+|.+...+..+ ......+.+.. .+.|+++|+||+|..++...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccc
Confidence 367899999754 22233446899999999999987433322 12233333321 23599999999998643332
Q ss_pred cHHHHHHHHHHh----C--C-cEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARAF----A--C-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~~----~--~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+....+.... + + .++++||++|.|++++++.+..
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 234444443211 2 3 7999999999999999988764
No 226
>PRK12736 elongation factor Tu; Reviewed
Probab=99.38 E-value=8.1e-12 Score=84.22 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=67.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~ 77 (112)
+.|+||||+++|......-+..+|++++|+|.+....-+. ...+..+.. .++| +++++||+|+.+..... .
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~ 151 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVE 151 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHH
Confidence 6799999999886655555678999999999876422222 222223333 3578 67889999986432221 1
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCC--------ChhHHhhhhc
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKV--------NSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~--------~v~~~~~~l~ 110 (112)
.+...+....+ .+++++||++|. ++.++++.+.
T Consensus 152 ~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~ 197 (394)
T PRK12736 152 MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD 197 (394)
T ss_pred HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence 23344444444 489999999983 4666666553
No 227
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.38 E-value=5.6e-12 Score=85.26 Aligned_cols=99 Identities=20% Similarity=0.064 Sum_probs=63.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc----H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG----K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~----~ 77 (112)
+.||||||+++|......-+..+|++++|+|......-+....|. .+.. . ...++++++||+|+.+..... .
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~-~--~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASL-L--GIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHH-c--CCCcEEEEEEecccccchHHHHHHHH
Confidence 679999999998665556678999999999987543222212221 1111 1 124688899999986422111 1
Q ss_pred HHHHHHHHHhC---CcEEEeecCCCCChhH
Q psy785 78 EQGASLARAFA---CTFLETSAKAKVNSWL 104 (112)
Q Consensus 78 ~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 104 (112)
++...+.+..+ .+++++||++|.|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222333334 4799999999999875
No 228
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.37 E-value=1.1e-11 Score=78.39 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=59.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.+|||||+.+|...+..+++.+|++++|+|.++.... ....++..+.+ .++|+++++||+|+.... ..+..
T Consensus 65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~--~~~~~ 137 (237)
T cd04168 65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGAD--LEKVY 137 (237)
T ss_pred EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCC--HHHHH
Confidence 368999999999988888899999999999999876443 23344444433 468999999999986422 13334
Q ss_pred HHHHHHhCCc
Q psy785 81 ASLARAFACT 90 (112)
Q Consensus 81 ~~~~~~~~~~ 90 (112)
.++...++..
T Consensus 138 ~~i~~~~~~~ 147 (237)
T cd04168 138 QEIKEKLSSD 147 (237)
T ss_pred HHHHHHHCCC
Confidence 4454555543
No 229
>PRK12288 GTPase RsgA; Reviewed
Probab=99.37 E-value=4.6e-12 Score=83.98 Aligned_cols=87 Identities=13% Similarity=0.043 Sum_probs=66.3
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-cHHHHHHHHHHhCCcEEEeecCCC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-GKEQGASLARAFACTFLETSAKAK 99 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 99 (112)
..|+|.+++|++.+.+.++..+..|+..+.. .++|+++|+||+|+.+.... ............+++++++||+++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3679999999999888899999999875543 56899999999999643211 112222333456889999999999
Q ss_pred CChhHHhhhhcc
Q psy785 100 VNSWLCVECTND 111 (112)
Q Consensus 100 ~~v~~~~~~l~~ 111 (112)
.|++++++.+..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999998754
No 230
>COG1159 Era GTPase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=79.48 Aligned_cols=105 Identities=20% Similarity=0.138 Sum_probs=69.2
Q ss_pred CceEEeCCCcccc--------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTEQF--------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
++-|.||||..+- .......++++|++++|+|++.+..-.+ ...+..+.. .+.|++++.||+|...+
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~----~~~pvil~iNKID~~~~ 129 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK----TKTPVILVVNKIDKVKP 129 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh----cCCCeEEEEEccccCCc
Confidence 3678999995532 2233445789999999999987432211 122333332 45799999999998765
Q ss_pred ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.....+....+.....+ .++++||++|.|++.+.+.+.
T Consensus 130 ~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~ 168 (298)
T COG1159 130 KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIK 168 (298)
T ss_pred HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHH
Confidence 54212223333333344 899999999999999988764
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.36 E-value=5.3e-12 Score=86.75 Aligned_cols=101 Identities=21% Similarity=0.051 Sum_probs=62.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH--
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE-- 78 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-- 78 (112)
++.||||||+++|......-++.+|++++|+|+.....-.....+. +.... ...|+++++||+|+.+.......
T Consensus 108 ~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i 183 (474)
T PRK05124 108 KFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKMDLVDYSEEVFERI 183 (474)
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEeeccccchhHHHHHH
Confidence 3679999999988654444579999999999987542211111111 11111 12478899999998642211111
Q ss_pred --HHHHHHHHhC----CcEEEeecCCCCChhHH
Q psy785 79 --QGASLARAFA----CTFLETSAKAKVNSWLC 105 (112)
Q Consensus 79 --~~~~~~~~~~----~~~~~~Sa~~~~~v~~~ 105 (112)
+...+....+ .+++++||++|.|+.++
T Consensus 184 ~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 184 REDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222233333 58999999999998764
No 232
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.36 E-value=5.9e-12 Score=77.13 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=62.6
Q ss_pred chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHH-----HHh
Q psy785 13 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLA-----RAF 87 (112)
Q Consensus 13 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~ 87 (112)
+..++..+++++|++++|+|++++.. .|...+... ..++|+++|+||+|+.+... .......+. +..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF--GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh--cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhc
Confidence 36677888999999999999987542 122223221 24689999999999864322 233333333 223
Q ss_pred CC---cEEEeecCCCCChhHHhhhhcc
Q psy785 88 AC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 88 ~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+. +++++||++|.|++++++.+.+
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~ 122 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKK 122 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 33 6899999999999999998764
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.35 E-value=8.7e-12 Score=80.15 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=56.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++|||||+.+|.......++.+|++++|+|.++..... ...++.... ..++|+++++||+|+..... ....
T Consensus 72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~----~~~~P~iivvNK~D~~~a~~--~~~~ 144 (267)
T cd04169 72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCR----LRGIPIITFINKLDREGRDP--LELL 144 (267)
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHH----hcCCCEEEEEECCccCCCCH--HHHH
Confidence 3789999999998877777889999999999997653222 223333222 25689999999999854221 2223
Q ss_pred HHHHHHhCCcEE
Q psy785 81 ASLARAFACTFL 92 (112)
Q Consensus 81 ~~~~~~~~~~~~ 92 (112)
.++...++.+.+
T Consensus 145 ~~l~~~l~~~~~ 156 (267)
T cd04169 145 DEIEEELGIDCT 156 (267)
T ss_pred HHHHHHHCCCce
Confidence 344444555433
No 234
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.34 E-value=2.7e-11 Score=81.47 Aligned_cols=104 Identities=22% Similarity=0.171 Sum_probs=71.2
Q ss_pred ceEEeCCCccc----------chh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ----------FTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~----------~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+.||+|..+ |+. -....+..++.+++|+|.+.+.+-++. .....+. ..+.+++++.||+|+.
T Consensus 228 ~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~----~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-RIAGLIE----EAGRGIVIVVNKWDLV 302 (444)
T ss_pred EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-HHHHHHH----HcCCCeEEEEEccccC
Confidence 67999999554 322 222347789999999999987665543 2223333 3678999999999987
Q ss_pred CcccccHHHHHHHH-HHh---C-CcEEEeecCCCCChhHHhhhhc
Q psy785 71 EERVVGKEQGASLA-RAF---A-CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~~~~~~~~~~~~-~~~---~-~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+......++..... +.+ + .+.+++||++|.++.++|+.+.
T Consensus 303 ~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 303 EEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred CchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 65333333333222 222 3 3899999999999999998764
No 235
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.33 E-value=7.3e-12 Score=74.47 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=60.3
Q ss_pred hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 14 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 14 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
..+.+...+++|++++|+|.+++..... ..+...+. ..++|+++|+||+|+.+.... .....+....+.++++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence 4566777888999999999977543221 11211121 245899999999998532211 1121233345678999
Q ss_pred eecCCCCChhHHhhhhc
Q psy785 94 TSAKAKVNSWLCVECTN 110 (112)
Q Consensus 94 ~Sa~~~~~v~~~~~~l~ 110 (112)
+||+++.|++++++.+.
T Consensus 76 iSa~~~~gi~~L~~~l~ 92 (156)
T cd01859 76 VSAKERLGTKILRRTIK 92 (156)
T ss_pred EEccccccHHHHHHHHH
Confidence 99999999999998875
No 236
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.32 E-value=2.3e-11 Score=72.23 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=65.6
Q ss_pred ceEEeCCCcc----------cchhhHHhhcc---cCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAGTE----------QFTAMRDLYMK---NGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~----------~~~~~~~~~~~---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+.+|||||.. .+......++. +++++++++|.....+ ...+..|+.. .+.|+++++||
T Consensus 47 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK 119 (170)
T cd01876 47 FRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTK 119 (170)
T ss_pred EEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEc
Confidence 6789999943 34444444544 4678999999876532 2223344322 24799999999
Q ss_pred CCCCCccccc--HHHHHHHHH--HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 67 CDLEEERVVG--KEQGASLAR--AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 67 ~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|+....... ........+ ....+++++||+++.|+.++++++.+
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHH
Confidence 9985432211 111222222 22358999999999999999998864
No 237
>PRK13351 elongation factor G; Reviewed
Probab=99.31 E-value=4.1e-11 Score=85.69 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=53.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
++++|||||+.+|...+..+++.+|++++|+|.++....+....|. .+.. .++|+++++||+|+..
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence 3789999999999888899999999999999998876665544442 2332 4689999999999753
No 238
>KOG1489|consensus
Probab=99.31 E-value=5.3e-11 Score=76.99 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=78.3
Q ss_pred ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
+.+-|.||.-+-. .....+++.|+.+++|+|.+.+ .+++.+.....++..+... ...|.++|+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 5677899844321 1233467899999999999998 8888888777777665443 678999999999985
Q ss_pred CcccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.. ...+.++++...- .++++||++++|+.++...+-+
T Consensus 326 eae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 326 EAE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred hHH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 311 1223556665543 4999999999999999887653
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.31 E-value=2.7e-11 Score=81.72 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~ 77 (112)
+.|+||||+++|......-+.++|++++|+|+.....-+ ....+..+.. .++|.+ +++||+|+.+..... .
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~ 151 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE 151 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHH
Confidence 679999999988665556677899999999997643222 1223333332 457866 579999986422211 1
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCC----------ChhHHhhhhc
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKV----------NSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~----------~v~~~~~~l~ 110 (112)
.+...+...++ ++++++||++|. ++..+++.+.
T Consensus 152 ~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~ 199 (396)
T PRK12735 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD 199 (396)
T ss_pred HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHH
Confidence 23344444443 579999999984 4566666553
No 240
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.29 E-value=2.3e-11 Score=79.95 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=77.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.+||++||...+..|..++.+++++++|+|.++. ..+......+..+.....-.+.|+++++||.|+..
T Consensus 163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 67999999999999999999999999999999873 33444444555555544446799999999999632
Q ss_pred c---------------c-cccHHHHHHHHHH----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785 72 E---------------R-VVGKEQGASLARA----------FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 72 ~---------------~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+ . ..+.+.+..+... ..+....++|.+..++..+|..+.
T Consensus 243 ~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~ 307 (317)
T cd00066 243 EKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVK 307 (317)
T ss_pred HhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHH
Confidence 1 0 2233344333322 123557789999999998887654
No 241
>KOG1707|consensus
Probab=99.27 E-value=2.2e-11 Score=83.84 Aligned_cols=108 Identities=23% Similarity=0.266 Sum_probs=82.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHH-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKE- 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~- 78 (112)
..+.||+..+.-....+.-++.||++.++|+++++.+++.+ ..|++.+.+.-+. .++|+|+||||.|.......+.+
T Consensus 58 t~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 58 TSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred eEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 35788876555555567788999999999999999999988 4699999886654 57999999999998754433222
Q ss_pred HHHHHHHHhC-C-cEEEeecCCCCChhHHhhhh
Q psy785 79 QGASLARAFA-C-TFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 79 ~~~~~~~~~~-~-~~~~~Sa~~~~~v~~~~~~l 109 (112)
....+..++. + ..++|||++..++.++|...
T Consensus 138 ~~~pim~~f~EiEtciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 138 NTLPIMIAFAEIETCIECSALTLANVSELFYYA 170 (625)
T ss_pred HHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhh
Confidence 2344444443 3 68999999999999998643
No 242
>PRK13768 GTPase; Provisional
Probab=99.27 E-value=5.3e-11 Score=75.99 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=66.1
Q ss_pred ceEEeCCCcccch---hhHHhhcc---c--CCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFT---AMRDLYMK---N--GQGFILVYSITAQSTFNDL--SDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~---~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+-+|||||+.+.. ..++.+++ + ++++++++|........+. ..|+....... .++|+++|.||+|+.+
T Consensus 99 ~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 99 YVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLS 176 (253)
T ss_pred EEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcC
Confidence 5699999987643 33333333 2 8999999999654322221 12322222111 4689999999999865
Q ss_pred cccccH--HHHH------------------------HHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGK--EQGA------------------------SLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~--~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...... .... +..+..+ .+++++||+++.|++++.+++.+
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~ 244 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQE 244 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence 332100 0000 1122234 48899999999999999998753
No 243
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.26 E-value=3.3e-11 Score=80.41 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=68.1
Q ss_pred cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHH----HHH
Q psy785 10 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGAS----LAR 85 (112)
Q Consensus 10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~ 85 (112)
.++|..+...++++++++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.+. ........+ +++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHH
Confidence 4567778888889999999999987654 23555555543 35799999999998653 223333333 355
Q ss_pred HhCC---cEEEeecCCCCChhHHhhhhc
Q psy785 86 AFAC---TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 86 ~~~~---~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.++ .++++||++|.|++++++.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 5666 489999999999999999875
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.25 E-value=4.9e-11 Score=84.63 Aligned_cols=100 Identities=19% Similarity=0.034 Sum_probs=63.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH---
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK--- 77 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--- 77 (112)
++.|+||||+++|......-+..+|++++|+|......-+....+ ..+... ...|+++++||+|+.+......
T Consensus 105 ~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i 180 (632)
T PRK05506 105 KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL---GIRHVVLAVNKMDLVDYDQEVFDEI 180 (632)
T ss_pred eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh---CCCeEEEEEEecccccchhHHHHHH
Confidence 367999999998865555567899999999998654321111111 112211 2257888999999864211101
Q ss_pred -HHHHHHHHHhCC---cEEEeecCCCCChhH
Q psy785 78 -EQGASLARAFAC---TFLETSAKAKVNSWL 104 (112)
Q Consensus 78 -~~~~~~~~~~~~---~~~~~Sa~~~~~v~~ 104 (112)
.+..++.+..++ +++++||++|.|+.+
T Consensus 181 ~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 181 VADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 122233344444 699999999999874
No 245
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.25 E-value=8e-11 Score=75.72 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=65.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||..++...+...++.+|++++|+|.+..........|. .+.. .++|.++++||+|..... ......
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~--~~~~~~ 138 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD--FDKTLA 138 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC--HHHHHH
Confidence 679999999988888888899999999999998765443333332 2222 468999999999986431 123334
Q ss_pred HHHHHhCCcEEEe--ecCCCCChhHHh
Q psy785 82 SLARAFACTFLET--SAKAKVNSWLCV 106 (112)
Q Consensus 82 ~~~~~~~~~~~~~--Sa~~~~~v~~~~ 106 (112)
.+...++.+++.+ ...++.++..+.
T Consensus 139 ~l~~~~~~~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 139 ALQEAFGRPVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred HHHHHhCCCeEEEEecccCCCceeEEE
Confidence 4444556554444 455555544333
No 246
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.23 E-value=7.7e-11 Score=75.88 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=61.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.+|||||+.++...+...++.+|++++|+|......-.. ...+..+.. .++|+++++||+|+.+... ....
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~a~~--~~~~ 137 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTGADF--FRVV 137 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCCCCH--HHHH
Confidence 36799999999988888889999999999999976432222 122233332 5689999999999864221 1122
Q ss_pred HHHHHHhCC----cEEEeecCCC
Q psy785 81 ASLARAFAC----TFLETSAKAK 99 (112)
Q Consensus 81 ~~~~~~~~~----~~~~~Sa~~~ 99 (112)
.++...++. ..+++|+..+
T Consensus 138 ~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 138 EQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHHHHHhCCCceEEEeccccCCC
Confidence 333333332 4678888755
No 247
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.23 E-value=6.8e-11 Score=82.18 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=49.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
++.+|||||+.+|.......++.+|++++|+|+++..... ...++... ...++|+++++||+|+..
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~----~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVC----RLRDTPIFTFINKLDRDG 145 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHH----HhcCCCEEEEEECCcccc
Confidence 3789999999999887777889999999999998643221 22333322 225799999999999864
No 248
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.22 E-value=1.5e-10 Score=76.84 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=76.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.+||.+||...+..|..++.+++++++|+|.++- ..++.....+..+.......+.|+++++||.|+..
T Consensus 186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 68999999999999999999999999999999863 23444444556666544446799999999999742
Q ss_pred c---------------ccccHHHHHHHHHH-----------hCCcEEEeecCCCCChhHHhhhhc
Q psy785 72 E---------------RVVGKEQGASLARA-----------FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 72 ~---------------~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
. ...+.+.+..+... ..+..+.+||.+-.++..+|..+.
T Consensus 266 ~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~ 330 (342)
T smart00275 266 EKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK 330 (342)
T ss_pred HHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence 1 01122333333221 124557889999888888887653
No 249
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.22 E-value=2.7e-10 Score=76.79 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=67.9
Q ss_pred ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
|.++||+|.+... ......+..||+++||+|....- .-+.+..|+. + .++|+++|+||+|..
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr---~----~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR---R----SKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH---h----cCCCEEEEEEcccCc
Confidence 6899999977422 12333577899999999986632 2233344432 2 458999999999975
Q ss_pred CcccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. .+........+|+ +++.+||.-|.|+.++.+++++
T Consensus 126 ~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~ 162 (444)
T COG1160 126 K-----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLE 162 (444)
T ss_pred h-----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHh
Confidence 2 1222222344677 8999999999999999998764
No 250
>KOG1145|consensus
Probab=99.22 E-value=3.4e-10 Score=77.84 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=72.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.|.||||+..|.+|+..=..-+|.+++|+...+ +.+.+.+. +....+.|+++..||+|.++. +++
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~pe 271 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---NPE 271 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---CHH
Confidence 6799999999999998877778899999998876 34444432 333468999999999997532 222
Q ss_pred H-HHHH------HHHhC--CcEEEeecCCCCChhHHhhhhc
Q psy785 79 Q-GASL------ARAFA--CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 79 ~-~~~~------~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
. .+++ ++.+| .+++++||++|.|++.+-+.+.
T Consensus 272 kv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 272 KVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred HHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 2 2222 23333 5899999999999999887764
No 251
>PRK12740 elongation factor G; Reviewed
Probab=99.21 E-value=2.5e-10 Score=81.57 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=50.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.++...+...++.+|++++++|.+..........|. .+.. .++|+++++||+|..
T Consensus 62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence 689999999998887888899999999999998866554443332 2222 468999999999975
No 252
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=78.33 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=67.6
Q ss_pred ceEEeCCCcccchhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++.||||.+...... ...++.||.+++|+|.+.+.+-.+... +. ....++|+++|.||.|+....
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~-----~~~~~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE-----LLPKKKPIIVVLNKADLVSKI 340 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH-----hcccCCCEEEEEechhccccc
Confidence 6899999987654433 235789999999999998632222211 11 123568999999999997644
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.... .....+.+++.+||++|.|++.+.+.+.
T Consensus 341 ~~~~-----~~~~~~~~~i~iSa~t~~Gl~~L~~~i~ 372 (454)
T COG0486 341 ELES-----EKLANGDAIISISAKTGEGLDALREAIK 372 (454)
T ss_pred ccch-----hhccCCCceEEEEecCccCHHHHHHHHH
Confidence 3211 1112245799999999999999988765
No 253
>KOG0077|consensus
Probab=99.18 E-value=2e-10 Score=68.05 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=82.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++.+|.+|+..-...|+.|+..+|++++.+|+.+.+.+...+.-++.+.......+.|+++.+||+|.+.. .++++.
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l 142 (193)
T KOG0077|consen 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDEL 142 (193)
T ss_pred eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHH
Confidence 467899999998888999999999999999999999888776665565555433478999999999998743 234333
Q ss_pred HH------HHHHh--------C---CcEEEeecCCCCChhHHhhhhcc
Q psy785 81 AS------LARAF--------A---CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~------~~~~~--------~---~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+- .+... + +.++.||...+.+.-+.|.|+.+
T Consensus 143 ~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 143 RFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred HHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence 22 11111 1 36788999999998899988754
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=99.18 E-value=5.4e-10 Score=75.52 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=66.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~ 77 (112)
+.|.||||+.+|......-+..+|++++|+|......-+. ...+..+.. .++|.+ ++.||+|+.+..... .
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~ 151 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVE 151 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHH
Confidence 5799999999886656666789999999999876432222 223333333 457876 589999986422211 1
Q ss_pred HHHHHHHHHh-----CCcEEEeecCCCC----------ChhHHhhhhc
Q psy785 78 EQGASLARAF-----ACTFLETSAKAKV----------NSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~~Sa~~~~----------~v~~~~~~l~ 110 (112)
.+...+.... +.+++++||+++. ++..+++.|.
T Consensus 152 ~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~ 199 (396)
T PRK00049 152 MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVD 199 (396)
T ss_pred HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHH
Confidence 1233333332 3589999999875 3456665553
No 255
>CHL00071 tufA elongation factor Tu
Probab=99.16 E-value=4.1e-10 Score=76.37 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=63.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~ 77 (112)
+.|.||||+.+|.......+..+|++++|+|+.....-+. ...+..+.. .++| ++++.||+|+.+..... .
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~ 151 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVE 151 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHH
Confidence 6799999999886656666789999999999876432222 222233332 4578 67899999987532211 1
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCCCh
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKVNS 102 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~v 102 (112)
.++..+.+..+ ++++++||.+|.++
T Consensus 152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 152 LEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 23344444433 58999999998743
No 256
>PLN03126 Elongation factor Tu; Provisional
Probab=99.15 E-value=5.5e-10 Score=76.93 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=62.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~ 77 (112)
+.|+||||+++|......-+..+|++++|+|......-+. ..++..+.. .++| ++++.||+|+.+..... .
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~ 220 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVE 220 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHH
Confidence 6799999999986656666778999999999876533222 233333333 4578 77899999986532211 1
Q ss_pred HHHHHHHHHh-----CCcEEEeecCCCCC
Q psy785 78 EQGASLARAF-----ACTFLETSAKAKVN 101 (112)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~~Sa~~~~~ 101 (112)
.+...+.+.. .++++++||.+|.+
T Consensus 221 ~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 221 LEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 2333444443 35899999998753
No 257
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.15 E-value=3.1e-10 Score=71.47 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred CceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.|++||+|||..+.. .....++++.++|+|+|+...+ .+..+...+..+.+.. ++..+-++.+|+|+..+
T Consensus 49 ~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-H
T ss_pred EEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCH
Confidence 378999999986543 4566789999999999998544 3344444555555543 67889999999998643
Q ss_pred cc--cc----HHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RV--VG----KEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~--~~----~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. .. .+...+.+...+ +.++.||.-+ ..+.+.+-++++
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq 173 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQ 173 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHH
Confidence 21 11 112223333445 6788888887 578887776654
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.14 E-value=6.6e-10 Score=76.08 Aligned_cols=98 Identities=18% Similarity=0.089 Sum_probs=63.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---h----HHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCC--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---T----FNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEE-- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s----~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~-- 71 (112)
+.|+||||+++|......-+..+|++++|+|.+... . -+..+.|. .+.. .++| ++++.||+|...
T Consensus 87 i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~----~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 87 FTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT----LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred EEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH----cCCCeEEEEEEccccccch
Confidence 689999999999776777788999999999987642 0 11222222 2222 4566 568999999531
Q ss_pred -c-cc--ccHHHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785 72 -E-RV--VGKEQGASLARAFA-----CTFLETSAKAKVNSWL 104 (112)
Q Consensus 72 -~-~~--~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 104 (112)
. .. ...+++.......+ ++++++||.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 11 11222333333333 5799999999999864
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.13 E-value=7.6e-10 Score=79.34 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=64.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.+|||||+.++...+...++.+|++++|+|.++....+....| ..+.. .++|+++++||+|+.... .....
T Consensus 76 ~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~~--~~~~~ 148 (689)
T TIGR00484 76 RINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTGAN--FLRVV 148 (689)
T ss_pred EEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence 478999999999887888889999999999999875444433223 22332 468999999999987422 12233
Q ss_pred HHHHHHhCC----cEEEeecCCCC
Q psy785 81 ASLARAFAC----TFLETSAKAKV 100 (112)
Q Consensus 81 ~~~~~~~~~----~~~~~Sa~~~~ 100 (112)
..+...++. ..+++|+..+.
T Consensus 149 ~~i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 149 NQIKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHHHhCCCceeEEeccccCCCc
Confidence 344444443 35777887763
No 260
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.12 E-value=7.4e-10 Score=72.41 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=75.7
Q ss_pred ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
|.+-|.||.-.- -.-...+++++.++++|+|++..+ ..+++.....++.++... .++|.++|+||+|+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 456788874321 122344688999999999998654 577777777888777543 689999999999975
Q ss_pred CcccccHHHHHHHHHHhCCcE-EEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFACTF-LETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+........+.+..++.. +.+||.++.|++++...+.+
T Consensus 289 ~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~ 330 (369)
T COG0536 289 LDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAE 330 (369)
T ss_pred cCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHH
Confidence 433332333334444455532 22999999999999887653
No 261
>PLN03127 Elongation factor Tu; Provisional
Probab=99.09 E-value=1.9e-09 Score=73.79 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=62.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccH---
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGK--- 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~--- 77 (112)
+.|.||||+++|......-...+|++++|+|......-+. ...+..+.. .++| ++++.||+|+.+......
T Consensus 126 i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~ 200 (447)
T PLN03127 126 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVE 200 (447)
T ss_pred EEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence 6799999999886544455567999999999875432222 222222332 4578 468899999875322111
Q ss_pred HHHHHHHHHh-----CCcEEEeecC---CCCC-------hhHHhhhhc
Q psy785 78 EQGASLARAF-----ACTFLETSAK---AKVN-------SWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~~Sa~---~~~~-------v~~~~~~l~ 110 (112)
.+..++.... .++++++||. +|.| +.++++.+.
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~ 248 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD 248 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence 1222222222 2578888876 4444 556665543
No 262
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.09 E-value=1e-09 Score=66.63 Aligned_cols=71 Identities=25% Similarity=0.477 Sum_probs=49.0
Q ss_pred ceEEeCCCcccchh-hHHh--hcccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQFTA-MRDL--YMKNGQGFILVYSITA-QSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~ 72 (112)
+++.|+||+++.+. +... +.+++.++|+|+|.+. +..+.....++-.+..... ...+|+++++||.|+...
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 67999999998765 4443 5889999999999974 4456666665555554443 257899999999998653
No 263
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.09 E-value=6.1e-10 Score=77.55 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=48.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++.+|||||+.+|.......++.+|++++|+|.++...- ....++.... ..++|+++++||+|+.
T Consensus 81 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 81 LVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTR----LRDTPIFTFMNKLDRD 145 (527)
T ss_pred EEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHH----hcCCCEEEEEECcccc
Confidence 368999999998887677788999999999999864211 1223333222 2568999999999985
No 264
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.05 E-value=8.8e-10 Score=65.63 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=54.1
Q ss_pred hcccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecC
Q psy785 20 YMKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.++++|.+++|+|..++.. ...+..+ +... ..++|+++|.||+|+.+.... ......+.+.+....+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHH---HHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 4679999999999988632 2223232 2221 245899999999999642211 111222222222345789999
Q ss_pred CCCChhHHhhhhc
Q psy785 98 AKVNSWLCVECTN 110 (112)
Q Consensus 98 ~~~~v~~~~~~l~ 110 (112)
++.|++++.+.+.
T Consensus 79 ~~~~~~~L~~~l~ 91 (157)
T cd01858 79 NPFGKGSLIQLLR 91 (157)
T ss_pred ccccHHHHHHHHH
Confidence 9999999888764
No 265
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.04 E-value=3e-09 Score=69.98 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCcEEEEeeCCCCCCcccccHHHHHHHHHHh-CCcEEEeecCCCCChhHHhh-hhc
Q psy785 57 DVPMVLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVNSWLCVE-CTN 110 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~-~l~ 110 (112)
.+|+++++||+|+.+... ....+.... ..+++++||+.+.++.++.+ .+.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~ 265 (318)
T cd01899 214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLI 265 (318)
T ss_pred CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHH
Confidence 479999999999753221 111222233 45899999999999999886 354
No 266
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.00 E-value=2.6e-09 Score=63.53 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=51.9
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 25 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 25 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
|.+++|+|+.++.+... .++.. ......++|+++|.||+|+.+.... ......+....+.+++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999988765432 23321 1111256899999999999642211 1111122223345789999999999999
Q ss_pred Hhhhhc
Q psy785 105 CVECTN 110 (112)
Q Consensus 105 ~~~~l~ 110 (112)
+.+.+.
T Consensus 76 L~~~i~ 81 (155)
T cd01849 76 KESAFT 81 (155)
T ss_pred HHHHHH
Confidence 998764
No 267
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.99 E-value=2.8e-09 Score=60.59 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEeCCCcc----cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 4 ILDTAGTE----QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 4 i~Dt~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
.+||||.- +++.-......++|.+++|..+++++|--. . ........|+|-+++|.|+.+... ...
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p---~f~~~~~k~vIgvVTK~DLaed~d--I~~ 110 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----P---GFLDIGVKKVIGVVTKADLAEDAD--ISL 110 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----c---ccccccccceEEEEecccccchHh--HHH
Confidence 47999843 333333345678999999999998864211 0 111124578999999999975333 445
Q ss_pred HHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++|..+-|. ++|++|+.++.|+++++..|..
T Consensus 111 ~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 111 VKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 5677777776 8999999999999999998764
No 268
>COG2262 HflX GTPases [General function prediction only]
Probab=98.96 E-value=1.6e-08 Score=67.62 Aligned_cols=85 Identities=24% Similarity=0.228 Sum_probs=59.4
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV 100 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 100 (112)
...+|.+++|+|.++|...+.+..-..-+ +..+...+|+++|.||+|+.++.. .......... ..+.+||++|.
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~ 342 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGE 342 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCc
Confidence 45899999999999997666655433333 333446699999999999765332 1111111112 58999999999
Q ss_pred ChhHHhhhhcc
Q psy785 101 NSWLCVECTND 111 (112)
Q Consensus 101 ~v~~~~~~l~~ 111 (112)
|++.+.+.+.+
T Consensus 343 gl~~L~~~i~~ 353 (411)
T COG2262 343 GLDLLRERIIE 353 (411)
T ss_pred CHHHHHHHHHH
Confidence 99999988753
No 269
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.96 E-value=3e-09 Score=64.25 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=58.7
Q ss_pred cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785 12 QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF 91 (112)
Q Consensus 12 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 91 (112)
+........+.++|.+++|+|+..+...... .+...+ .+.|+++|.||+|+.+... .....++.+..+.++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~v 78 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKV 78 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeE
Confidence 4444556678899999999999876432111 111111 3479999999999863221 111222223334578
Q ss_pred EEeecCCCCChhHHhhhhc
Q psy785 92 LETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 92 ~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.+||+++.|++++.+.+.
T Consensus 79 i~iSa~~~~gi~~L~~~l~ 97 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAK 97 (171)
T ss_pred EEEECCCcccHHHHHHHHH
Confidence 9999999999999988765
No 270
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=5.9e-09 Score=61.08 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=52.8
Q ss_pred HhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785 18 DLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS 95 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 95 (112)
...++++|++++|+|+.++.+.. .+..|+... . .++|++++.||+|+.++.. .....+..+..+.+++++|
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 44678999999999998876433 334443322 1 4689999999999864322 2233444555677899999
Q ss_pred cCCCCC
Q psy785 96 AKAKVN 101 (112)
Q Consensus 96 a~~~~~ 101 (112)
|+++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998864
No 271
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.94 E-value=6.6e-09 Score=73.07 Aligned_cols=102 Identities=22% Similarity=0.189 Sum_probs=73.3
Q ss_pred ceEEeCCCcccchh------hHHhh-c-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA------MRDLY-M-KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~------~~~~~-~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++.|.||.-.... ..+.+ . .++|+++-|+|.++-+.--.+ -.++.+ -++|++++.|++|..+++
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl---tlQLlE----~g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL---TLQLLE----LGIPMILALNMIDEAKKR 124 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH---HHHHHH----cCCCeEEEeccHhhHHhc
Confidence 68999999554321 22233 3 467999999999986532111 122333 468999999999986544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+ .-+..++.+.+|+|++++||++|.|++++.+.+.+
T Consensus 125 Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 125 GI-RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred CC-cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 43 34556777889999999999999999999988753
No 272
>PRK12739 elongation factor G; Reviewed
Probab=98.94 E-value=1.2e-08 Score=73.32 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=61.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.++||||+.+|...+...++.+|++++|+|......-+... .+..+.+ .++|.++++||+|+.... .....
T Consensus 74 ~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~----~~~p~iv~iNK~D~~~~~--~~~~~ 146 (691)
T PRK12739 74 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK----YGVPRIVFVNKMDRIGAD--FFRSV 146 (691)
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence 3689999999988777888899999999999997654333222 2222322 568999999999987422 12223
Q ss_pred HHHHHHhCC----cEEEeecCCCC
Q psy785 81 ASLARAFAC----TFLETSAKAKV 100 (112)
Q Consensus 81 ~~~~~~~~~----~~~~~Sa~~~~ 100 (112)
.++...++. ..+++|+..+.
T Consensus 147 ~~i~~~l~~~~~~~~iPis~~~~f 170 (691)
T PRK12739 147 EQIKDRLGANAVPIQLPIGAEDDF 170 (691)
T ss_pred HHHHHHhCCCceeEEecccccccc
Confidence 333333433 34567776654
No 273
>KOG1423|consensus
Probab=98.94 E-value=1.2e-08 Score=66.08 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=65.5
Q ss_pred CceEEeCCCcccchh------------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 1 MLEILDTAGTEQFTA------------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
++-|+||||.-.-.. ..+..+.+||++++|+|+++....-. -..+..+.++ ..+|-++|.||.|
T Consensus 121 Qlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid 196 (379)
T KOG1423|consen 121 QLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKID 196 (379)
T ss_pred EEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchh
Confidence 367999999432111 12224568999999999986322111 0122223333 4589999999999
Q ss_pred CCCcc-------------cccHHHHHHHHHHh-------------CC----cEEEeecCCCCChhHHhhhhccC
Q psy785 69 LEEER-------------VVGKEQGASLARAF-------------AC----TFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 69 ~~~~~-------------~~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
....+ +++.. ..++.+++ |+ .+|.+||++|.||+++-++|..|
T Consensus 197 ~~k~k~~Ll~l~~~Lt~g~l~~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq 269 (379)
T KOG1423|consen 197 KLKQKRLLLNLKDLLTNGELAKL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ 269 (379)
T ss_pred cchhhhHHhhhHHhccccccchh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence 76432 12110 11222222 12 48999999999999999998764
No 274
>PRK01889 GTPase RsgA; Reviewed
Probab=98.93 E-value=1.1e-08 Score=68.37 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=59.3
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHH-HhCCcEEEeecCCC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLAR-AFACTFLETSAKAK 99 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 99 (112)
..|+|.+++|++...+-+...+.+++..+.. .++|+++|.||+|+.+.. .+....+.. ..+++++.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 5789999999999754455556666655544 568889999999997431 111222222 34679999999999
Q ss_pred CChhHHhhhhc
Q psy785 100 VNSWLCVECTN 110 (112)
Q Consensus 100 ~~v~~~~~~l~ 110 (112)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999988764
No 275
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.93 E-value=1.3e-08 Score=65.88 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=72.7
Q ss_pred ccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785 11 EQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC 89 (112)
Q Consensus 11 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 89 (112)
++.+.+.+.-+.+.|-.++++...+|+ +...+.+++-.... .++..+++.||+|+.++.....++........|+
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy 142 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGY 142 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCe
Confidence 345566777777889999999988876 56666666544433 6788889999999986544332345556677899
Q ss_pred cEEEeecCCCCChhHHhhhhcc
Q psy785 90 TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 90 ~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++.+|++++.+++++...+..
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcC
Confidence 9999999999999999887753
No 276
>KOG1144|consensus
Probab=98.92 E-value=5.1e-09 Score=74.45 Aligned_cols=102 Identities=22% Similarity=0.160 Sum_probs=70.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE------ 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~------ 72 (112)
+-++||||++.|..++..-.+-||..|+|+|+.. +.+++++.. +.. .+.|+|+..||+|....
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~----rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRM----RKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHh----cCCCeEEeehhhhhhcccccCCC
Confidence 5689999999999988888889999999999865 345555432 222 56899999999995311
Q ss_pred ccc-------cHH-----------HHHHHHHH-hC-------------CcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVV-------GKE-----------QGASLARA-FA-------------CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~-------~~~-----------~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+ ... ...+++.. ++ +.++++||.+|.||-+++-+|++
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 000 000 01111110 11 25789999999999999988875
No 277
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.92 E-value=1.9e-08 Score=62.07 Aligned_cols=102 Identities=13% Similarity=0.023 Sum_probs=59.9
Q ss_pred ceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--
Q psy785 2 LEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-- 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-- 74 (112)
+.+|||||...... +....+.++|+++++.+. .... .-..|+..+.+ .+.|+++|+||+|+..+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~~~--~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~ 126 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RFSS--NDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQR 126 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CCCH--HHHHHHHHHHH----hCCCEEEEEecccchhhhhhc
Confidence 68999999754322 222236788999988542 2221 11345555554 3579999999999843111
Q ss_pred ---------ccHHHHHHHHHH-h---C---CcEEEeecC--CCCChhHHhhhhc
Q psy785 75 ---------VGKEQGASLARA-F---A---CTFLETSAK--AKVNSWLCVECTN 110 (112)
Q Consensus 75 ---------~~~~~~~~~~~~-~---~---~~~~~~Sa~--~~~~v~~~~~~l~ 110 (112)
...+..++.+.. . + .++|.+|+. .+.|+..+.+.+.
T Consensus 127 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~ 180 (197)
T cd04104 127 SKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLL 180 (197)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence 011122222221 1 2 278999998 5688888877664
No 278
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.7e-08 Score=66.54 Aligned_cols=98 Identities=20% Similarity=0.115 Sum_probs=64.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHH--HHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTDDVPMVLVGNKCDLEEERVVG-- 76 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 76 (112)
+|-+-||||++.|......=.+-||..|+++|.-.. -.+..++ ++..++. -.-+++..||+|+.+-.+.-
T Consensus 87 kFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 87 KFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred eEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCHHHHH
Confidence 467899999999987666667789999999998322 2222221 2222222 24678888999997533211
Q ss_pred --HHHHHHHHHHhCC---cEEEeecCCCCChhH
Q psy785 77 --KEQGASLARAFAC---TFLETSAKAKVNSWL 104 (112)
Q Consensus 77 --~~~~~~~~~~~~~---~~~~~Sa~~~~~v~~ 104 (112)
..+...++..+++ .++++||..|.||-.
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2233446666665 789999999998753
No 279
>PRK13796 GTPase YqeH; Provisional
Probab=98.88 E-value=2.4e-08 Score=66.94 Aligned_cols=82 Identities=21% Similarity=0.200 Sum_probs=56.4
Q ss_pred cccCC-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHH----HHHhCC---cEE
Q psy785 21 MKNGQ-GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASL----ARAFAC---TFL 92 (112)
Q Consensus 21 ~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~---~~~ 92 (112)
+...+ .+++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.+. ........++ ++..++ .++
T Consensus 66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 34445 899999987643 23455555543 35799999999999642 2223333333 445565 689
Q ss_pred EeecCCCCChhHHhhhhc
Q psy785 93 ETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 93 ~~Sa~~~~~v~~~~~~l~ 110 (112)
.+||+++.|++++++.+.
T Consensus 138 ~vSAk~g~gI~eL~~~I~ 155 (365)
T PRK13796 138 LISAQKGHGIDELLEAIE 155 (365)
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 999999999999999874
No 280
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=67.50 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=63.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 76 (112)
|.|.|+||+.+|-...-.-.++||+.|+|+|+.+.+ .| +...+--..+.+.. .-...|++.||+|+.+-.+.-
T Consensus 87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCHHH
Confidence 689999999988766666678999999999998763 11 11111111122221 124678889999997522111
Q ss_pred H----HHHHHHHHHhC-----CcEEEeecCCCCChhH
Q psy785 77 K----EQGASLARAFA-----CTFLETSAKAKVNSWL 104 (112)
Q Consensus 77 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 104 (112)
. .+...+.+..| ++++++||.+|.|+.+
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 12222344444 4699999999998764
No 281
>PRK00007 elongation factor G; Reviewed
Probab=98.82 E-value=6e-08 Score=69.80 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++.+.||||+.+|.......++.+|++++|+|....-..+....| ..+.+ .++|.++++||+|+.+.. .....
T Consensus 76 ~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~~~~--~~~~~ 148 (693)
T PRK00007 76 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRTGAD--FYRVV 148 (693)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCCCCC--HHHHH
Confidence 368999999998876667778899999999998765443333323 22333 468999999999987422 12333
Q ss_pred HHHHHHhCC----cEEEeecCCC
Q psy785 81 ASLARAFAC----TFLETSAKAK 99 (112)
Q Consensus 81 ~~~~~~~~~----~~~~~Sa~~~ 99 (112)
.++.+.++. ..+++||.++
T Consensus 149 ~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 149 EQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHhCCCeeeEEecCccCCc
Confidence 344444443 4567888776
No 282
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=2.6e-08 Score=64.47 Aligned_cols=87 Identities=17% Similarity=0.094 Sum_probs=57.3
Q ss_pred hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEe
Q psy785 15 AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLET 94 (112)
Q Consensus 15 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
......++.+|++++|+|+..+.+... .++.... .+.|+++|.||+|+.+... .....+..+..+.+++.+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEE
Confidence 345567889999999999976644322 1111111 2479999999999864221 112222223345688999
Q ss_pred ecCCCCChhHHhhhhc
Q psy785 95 SAKAKVNSWLCVECTN 110 (112)
Q Consensus 95 Sa~~~~~v~~~~~~l~ 110 (112)
||+++.|+.++.+.+.
T Consensus 84 Sa~~~~gi~~L~~~i~ 99 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAK 99 (276)
T ss_pred ECCCcccHHHHHHHHH
Confidence 9999999999877664
No 283
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.80 E-value=7.3e-08 Score=65.70 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=70.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~ 79 (112)
++|.||||+-+|.--.+..++=+|++++++|..... .=..+.-++...+ .+.+.|+|.||+|.+..+. +-.+.
T Consensus 70 INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~v 144 (603)
T COG1217 70 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEV 144 (603)
T ss_pred EEEecCCCcCCccchhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHH
Confidence 689999999999888888889999999999986532 1111222333333 5678899999999865332 11111
Q ss_pred HHHHH------HHhCCcEEEeecCCCC----------ChhHHhhhhcc
Q psy785 80 GASLA------RAFACTFLETSAKAKV----------NSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~------~~~~~~~~~~Sa~~~~----------~v~~~~~~l~~ 111 (112)
...+. .++.+|++..||++|. +...+|+.+++
T Consensus 145 fDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~ 192 (603)
T COG1217 145 FDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILD 192 (603)
T ss_pred HHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHH
Confidence 22222 2346899999999984 56666766653
No 284
>KOG0090|consensus
Probab=98.78 E-value=3.1e-07 Score=56.85 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=49.2
Q ss_pred ceEEeCCCcccchhhHHhhcc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMK---NGQGFILVYSITAQ-STFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~ 70 (112)
.++.|.||+.+.+.....+++ ++-+++||+|.... ........++=.+.-..+ ...+|++++.||.|+.
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 478999999998776666666 79999999998542 344444444444433332 3568999999999985
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.77 E-value=9e-08 Score=59.23 Aligned_cols=79 Identities=18% Similarity=0.038 Sum_probs=52.0
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCC
Q psy785 24 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVN 101 (112)
Q Consensus 24 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~ 101 (112)
++.++.|+|+.+.++... .+... -...-++++||+|+.+......+...+..+.+ +.+++++||++|.|
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~q-------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPG-------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhH-------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 688999999987655321 11111 11233889999999742122233334444443 46999999999999
Q ss_pred hhHHhhhhcc
Q psy785 102 SWLCVECTND 111 (112)
Q Consensus 102 v~~~~~~l~~ 111 (112)
++++|+++.+
T Consensus 184 i~el~~~i~~ 193 (199)
T TIGR00101 184 LDTVIDWIEH 193 (199)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.75 E-value=2.9e-08 Score=71.66 Aligned_cols=64 Identities=28% Similarity=0.301 Sum_probs=47.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.+|.......++.+|++++|+|....-..+....|. .+.+ .++|+++++||+|..
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK----ENVKPVLFINKVDRL 151 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH----cCCCEEEEEEChhcc
Confidence 689999999999887888899999999999987643222222222 1222 457889999999975
No 287
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.74 E-value=1.8e-07 Score=57.40 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=66.6
Q ss_pred ceEEeCCC----------cccchhhHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAG----------TEQFTAMRDLYMK---NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.+.|.|| ++....+...|++ +..++++++|+-.+....+. ..+.-+.+ .++|+++++||+|
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~D 146 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKAD 146 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccc
Confidence 57899998 3444555556654 46889999998665433222 22222333 5799999999999
Q ss_pred CCCcccccHHHHHHHHHHh----CCc--EEEeecCCCCChhHHhhhhcc
Q psy785 69 LEEERVVGKEQGASLARAF----ACT--FLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+.... .......++.. ... ++..|+.++.|++++...+.+
T Consensus 147 Ki~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~ 194 (200)
T COG0218 147 KLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILE 194 (200)
T ss_pred cCChhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHH
Confidence 8764332 12222333333 222 788899999999998877653
No 288
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.73 E-value=9.9e-09 Score=65.08 Aligned_cols=107 Identities=18% Similarity=0.120 Sum_probs=54.1
Q ss_pred ceEEeCCCcccchhhHHhhc--------ccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQFTAMRDLYM--------KNGQGFILVYSITAQST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+-++|||||.++...+...- ...-++++++|.....+ ...+..++..+.... ..+.|.+.|.||+|+.+.
T Consensus 93 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 93 YLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp EEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-H
T ss_pred EEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCcccc
Confidence 46899999998776555543 45678999999854322 222222222221111 035899999999999752
Q ss_pred cc-------cc------------HHHHHHHHHH---hC-C-cEEEeecCCCCChhHHhhhh
Q psy785 73 RV-------VG------------KEQGASLARA---FA-C-TFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 73 ~~-------~~------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~v~~~~~~l 109 (112)
.. .. ....+.+++- ++ . .++++|+.++.|+.+++..+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 10 00 0001111221 13 3 79999999999999998765
No 289
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.69 E-value=8.6e-08 Score=62.41 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=57.1
Q ss_pred hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS 95 (112)
Q Consensus 16 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 95 (112)
.....++.+|++++|+|...+.+... .++.... .+.|+++|.||+|+.+... .+...++.++.+.+++.+|
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vS 87 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAIN 87 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEE
Confidence 44556889999999999977644322 1122221 2579999999999853211 1122222334467889999
Q ss_pred cCCCCChhHHhhhhc
Q psy785 96 AKAKVNSWLCVECTN 110 (112)
Q Consensus 96 a~~~~~v~~~~~~l~ 110 (112)
|+++.|+.++.+.+.
T Consensus 88 a~~~~gi~~L~~~l~ 102 (287)
T PRK09563 88 AKKGQGVKKILKAAK 102 (287)
T ss_pred CCCcccHHHHHHHHH
Confidence 999999999887654
No 290
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.67 E-value=1.5e-07 Score=61.55 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=66.6
Q ss_pred ceEEeCCCcccch-----hh---HHhhcc-cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFT-----AM---RDLYMK-NGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-----~~---~~~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+|++||||.-+-. .+ .-..++ =.++++|++|.+.. -+.+.....+.++... ...|+++|.||+|+.
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~ 293 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIA 293 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEeccccc
Confidence 6899999944311 10 001122 25788999998754 3677777777777765 348999999999987
Q ss_pred CcccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhh
Q psy785 71 EERVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l 109 (112)
..... ++.......-+ .....+++..+.+++.+.+.+
T Consensus 294 ~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v 331 (346)
T COG1084 294 DEEKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEV 331 (346)
T ss_pred chhHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHH
Confidence 53332 33333333334 357888999988888766543
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.67 E-value=9.2e-08 Score=59.45 Aligned_cols=55 Identities=20% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCcEEEEeeCCCCCCcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..|.++++||+|+.+..........+..++.+ .+++++||++|.|++++++++.+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999996532222333444444433 69999999999999999999864
No 292
>KOG0082|consensus
Probab=98.64 E-value=4.2e-07 Score=60.31 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=74.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhh----------HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST----------FNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.++++|.+||..-..-|..++.++++++|+++++.-+. +..-...+..+-.+.--.+.++|++.||.|+-
T Consensus 196 ~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 196 KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLF 275 (354)
T ss_pred ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence 37899999999888889999999999999999876331 11112345555554434679999999999974
Q ss_pred Ccc---------------cccHHHHHHHHHH-----h-----CCcEEEeecCCCCChhHHhhhhc
Q psy785 71 EER---------------VVGKEQGASLARA-----F-----ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~---------------~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+++ ....+++..+.+. + .+-...++|.+-.+|..+|..+.
T Consensus 276 eEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 276 EEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred HHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 321 1122333332221 1 23456779999999999988764
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.62 E-value=4.4e-07 Score=60.13 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=60.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 79 (112)
+-|.||+|...-... ...-+|.++++.+....+.+.... ..+.+ +.-++|+||+|+.+.... ...+
T Consensus 151 ~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~e 218 (332)
T PRK09435 151 VILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAE 218 (332)
T ss_pred EEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHH
Confidence 468999996632222 356799999998754444443321 21222 344899999998653321 1111
Q ss_pred HHHHHHH-------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARA-------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
....... +..+++.+||+++.|++++++.+.+
T Consensus 219 l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 219 YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 2221111 1248999999999999999988753
No 294
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.4e-07 Score=62.73 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
++++.||||+++|+.-.-..+..+|.++.|+|....-.-+.+ .+.+-+...++|++-+.||.|..... +.+.+
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELL 154 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRDIPIFTFINKLDREGRD--PLELL 154 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-----HHHHHHhhcCCceEEEeeccccccCC--hHHHH
Confidence 378999999999988666678899999999998764221211 23444455789999999999975433 24555
Q ss_pred HHHHHHhCCcEEEe
Q psy785 81 ASLARAFACTFLET 94 (112)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (112)
.++.+.+++...++
T Consensus 155 dEiE~~L~i~~~Pi 168 (528)
T COG4108 155 DEIEEELGIQCAPI 168 (528)
T ss_pred HHHHHHhCcceecc
Confidence 66666676544433
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.60 E-value=7.8e-07 Score=60.34 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
.+|+++|+||.|...... ....+.+..+..++++||+.+.++.+
T Consensus 217 ~KPvI~VlNK~D~~~~~~----~l~~i~~~~~~~vvpISA~~e~~l~~ 260 (396)
T PRK09602 217 SKPMVIAANKADLPPAEE----NIERLKEEKYYIVVPTSAEAELALRR 260 (396)
T ss_pred CCCEEEEEEchhcccchH----HHHHHHhcCCCcEEEEcchhhhhHHH
Confidence 489999999999753221 12222222234799999999999887
No 296
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=7.8e-07 Score=60.20 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=69.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.|.|.||.+++-...-.-+...|.++++++.++ +.+.+.+. +.+.- .-.-.++|.||+|..++..+ .+
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdll--gi~~giivltk~D~~d~~r~-e~ 123 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLL--GIKNGIIVLTKADRVDEARI-EQ 123 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhc--CCCceEEEEeccccccHHHH-HH
Confidence 5799999999886655566778999999999954 33444332 12211 22345899999998764432 33
Q ss_pred HHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++.... ..+++.+|+++|.||+++...+.+
T Consensus 124 ~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~ 159 (447)
T COG3276 124 KIKQILADLSLANAKIFKTSAKTGRGIEELKNELID 159 (447)
T ss_pred HHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence 333333332 347899999999999999988764
No 297
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.58 E-value=2.4e-07 Score=60.05 Aligned_cols=67 Identities=9% Similarity=0.037 Sum_probs=39.8
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--ccHHHHHHHHHHhCCcEEEeec
Q psy785 23 NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--VGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.+|+++++++.+... ..+ ...++.+. ..+|+++|+||+|+....+ ...+...+.+..++++++....
T Consensus 114 rvh~~ly~i~~~~~~l~~~D--~~~lk~l~-----~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLD--IEFMKRLS-----KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHH--HHHHHHHh-----ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 478888888876421 221 12222222 2589999999999865322 2234455566667777776554
No 298
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.7e-07 Score=61.31 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=66.1
Q ss_pred ceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITAQS----TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~----s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+.|.|.||++-.-+ ..+++ .|+.++|+..+.+. +-+.+.- .+.. .-.-++++-||+|+..+..
T Consensus 88 VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-----leIi--gik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 88 VSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMA-----LEII--GIKNIIIVQNKIDLVSRER 157 (415)
T ss_pred EEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHH-----Hhhh--ccceEEEEecccceecHHH
Confidence 57899999886433 33444 49999999987653 3333211 1111 2256888999999986433
Q ss_pred c--cHHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 75 V--GKEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ~--~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. +.+++.+|.+.- +.|++++||..+.|++-+++.+.+
T Consensus 158 AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~ 199 (415)
T COG5257 158 ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEK 199 (415)
T ss_pred HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHH
Confidence 2 123334444421 569999999999999999988754
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.57 E-value=1.9e-07 Score=68.54 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=49.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++++||||+.+|.......++.+|++++|+|+...-......-|. .+.. .++|+++++||+|..
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence 579999999999887788889999999999988654333333332 2332 568999999999975
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.57 E-value=2.7e-07 Score=60.43 Aligned_cols=98 Identities=20% Similarity=0.135 Sum_probs=58.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH--HH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK--EQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~ 79 (112)
+-|.||+|.-... ......+|.++++.... +.+.+......+ .++|.++++||+|+.+...... ..
T Consensus 129 ~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~ 196 (300)
T TIGR00750 129 VIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLM 196 (300)
T ss_pred EEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHH
Confidence 4688999844211 12456788888886543 333333333333 3478899999999864322110 00
Q ss_pred ----HHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 ----GASLARA---FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ----~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+... ++.+++++||+++.|++++++++.+
T Consensus 197 ~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~ 235 (300)
T TIGR00750 197 LALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE 235 (300)
T ss_pred HHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence 0111111 1236899999999999999998754
No 301
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.56 E-value=1e-06 Score=57.78 Aligned_cols=47 Identities=34% Similarity=0.187 Sum_probs=36.2
Q ss_pred CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|.+.|.||+|+.. .++...+.+.. ..+++||..+.|++++.+.+.+
T Consensus 240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHH
Confidence 79999999999864 23333333322 8899999999999999998764
No 302
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.53 E-value=2.5e-06 Score=53.80 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=52.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccH---
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGK--- 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~--- 77 (112)
+.++||||.. ..+ ....+.+|++++++|.+........ ..+..+.. .+.|.+ +|.||+|+.+....-.
T Consensus 85 i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~ 156 (225)
T cd01882 85 LTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMETF-EFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTK 156 (225)
T ss_pred EEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHH
Confidence 5789999854 222 2346889999999998754332221 22222322 456754 5999999864221111
Q ss_pred HHHHH-HHHHh--CCcEEEeecCCCC
Q psy785 78 EQGAS-LARAF--ACTFLETSAKAKV 100 (112)
Q Consensus 78 ~~~~~-~~~~~--~~~~~~~Sa~~~~ 100 (112)
+.++. +..+. +.+++.+||+++.
T Consensus 157 ~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 157 KRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 11222 22222 3489999999874
No 303
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.51 E-value=3e-07 Score=66.63 Aligned_cols=64 Identities=28% Similarity=0.295 Sum_probs=47.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|+||||+.+|.......++.+|++++|+|....-..+....|.. +.+ .++|+++++||+|..
T Consensus 89 i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 89 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred EEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH----cCCCeEEEEECchhh
Confidence 5789999999998888888999999999999876533332233322 222 346889999999975
No 304
>KOG0458|consensus
Probab=98.51 E-value=4.5e-07 Score=63.07 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=62.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
.+.+.|+||+..|....-.-...||+.++|+|++... .|+ .++.. ..+.+.. .-...+++.||+|+.+=.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~L--gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSL--GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHc--CcceEEEEeecccccCccH
Confidence 3689999998888776666677899999999997642 221 11111 1222222 2356888999999974221
Q ss_pred ccHHH----HHHHH-HHh-----CCcEEEeecCCCCChhH
Q psy785 75 VGKEQ----GASLA-RAF-----ACTFLETSAKAKVNSWL 104 (112)
Q Consensus 75 ~~~~~----~~~~~-~~~-----~~~~~~~Sa~~~~~v~~ 104 (112)
--.++ +.-+. +.. .+.+++||+.+|.|+..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 11122 22222 222 34799999999998754
No 305
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.47 E-value=1.6e-06 Score=55.72 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=68.5
Q ss_pred ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--
Q psy785 2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE-- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-- 72 (112)
+.+|||||-++ +....+.++...|.++++.+..++.---+.. ++..+.... .+.|+++++|..|...+
T Consensus 89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDED-FLRDVIILG--LDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHH-HHHHHHHhc--cCceeEEEEehhhhhcccc
Confidence 68999999665 5556777788999999999998775222222 223333321 34899999999996432
Q ss_pred -----ccccHHHHHHH----HHHh------CCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 -----RVVGKEQGASL----ARAF------ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 -----~~~~~~~~~~~----~~~~------~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
........+++ +... --|++.+|+..+.|++++...+++
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~ 219 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALIT 219 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHH
Confidence 01111111111 1111 238888889999999999988764
No 306
>KOG1490|consensus
Probab=98.46 E-value=1.2e-06 Score=60.36 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=66.5
Q ss_pred ceEEeCCCcccch----------h-hHHhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFT----------A-MRDLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----------~-~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
.++.||||.-+.. + ..-.+++ .+++++.|.+.. .|....-..+..|...- .+.|.|+|.||+|
T Consensus 217 wQViDTPGILD~plEdrN~IEmqsITALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D 292 (620)
T KOG1490|consen 217 WQVIDTPGILDRPEEDRNIIEMQIITALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKID 292 (620)
T ss_pred eeecCCccccCcchhhhhHHHHHHHHHHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeeccc
Confidence 5789999954321 1 1112333 356666676554 46666666666665532 6799999999999
Q ss_pred CCCcccccHHHHH---HHHHHhCCcEEEeecCCCCChhHHhhh
Q psy785 69 LEEERVVGKEQGA---SLARAFACTFLETSAKAKVNSWLCVEC 108 (112)
Q Consensus 69 ~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 108 (112)
+-....++.+... .....-+++++++|+.+..||-++...
T Consensus 293 ~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 293 AMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred ccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHH
Confidence 9765655544322 223333579999999999998876544
No 307
>PTZ00416 elongation factor 2; Provisional
Probab=98.45 E-value=5.2e-07 Score=66.23 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=48.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|.||||+.+|.......++.+|++++|+|....-..+...-| ..+.+ .++|++++.||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence 67999999999987778888999999999998775333322223 33333 458999999999985
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=5e-07 Score=64.87 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=51.0
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.++++||||+-+|..-....++-+|+++.|+|....-..+...-|... ...++|.+++.||+|..
T Consensus 77 ~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-----~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 77 RINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-----DKYGVPRILFVNKMDRL 141 (697)
T ss_pred EEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-----hhcCCCeEEEEECcccc
Confidence 378999999999999999999999999999998765433333334322 23579999999999975
No 309
>KOG0468|consensus
Probab=98.36 E-value=7e-07 Score=63.37 Aligned_cols=64 Identities=27% Similarity=0.444 Sum_probs=51.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
.+++.||||+..|..-....++-+|++++++|+...-.++.-+ +.++....+.|+++|.||+|.
T Consensus 198 l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 198 LMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred eeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcEEEEEehhHH
Confidence 3789999999999888888899999999999998766554432 333333467999999999995
No 310
>KOG1707|consensus
Probab=98.33 E-value=2.6e-06 Score=59.45 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=62.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC-cEEEeecCCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKV 100 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 100 (112)
..||+++++||.+++.+++.+...+..-. ....+|+++|++|+|+.+..+...-.-.+++.++++ +.+.+|.+...
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~---~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYF---DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhh---hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence 57999999999999999988766443322 226799999999999976443222223789999998 56777777533
Q ss_pred ChhHHhhhhc
Q psy785 101 NSWLCVECTN 110 (112)
Q Consensus 101 ~v~~~~~~l~ 110 (112)
. .++|.+|.
T Consensus 571 s-~~lf~kL~ 579 (625)
T KOG1707|consen 571 S-NELFIKLA 579 (625)
T ss_pred C-chHHHHHH
Confidence 4 77887765
No 311
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.32 E-value=1.4e-06 Score=59.06 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=74.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS----------TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.++|.+||...+.-|..++.+++++++|++++.-+ .+..-...+..+.....-.+.|++++.||.|+-.
T Consensus 238 ~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 238 FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHH
Confidence 689999999988999999999999999999975421 2333334455555544446799999999999621
Q ss_pred -----cc-----------c--ccHHHHHHHHHHh------------CCcEEEeecCCCCChhHHhhhhc
Q psy785 72 -----ER-----------V--VGKEQGASLARAF------------ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 72 -----~~-----------~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.. . -+.+.+..+.... .+.+..++|.+..++..+|..+.
T Consensus 318 ~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~ 386 (389)
T PF00503_consen 318 EKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVK 386 (389)
T ss_dssp HHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHH
T ss_pred HHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhc
Confidence 11 1 2334444443321 12456889999889998888764
No 312
>KOG1532|consensus
Probab=98.29 E-value=3.9e-05 Score=49.67 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=61.9
Q ss_pred ceEEeCCCccc-chh------hHHhh-cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ-FTA------MRDLY-MKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~------~~~~~-~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
..++|||||-. |.. +...+ -....++++++|... +.+|-+=.-+--.+... ...|.+++.||.|+.
T Consensus 118 ~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 118 YVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTDVS 194 (366)
T ss_pred EEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccccc
Confidence 35899999764 221 22222 235678888888743 34443222222223221 568999999999987
Q ss_pred Ccccc-----cHHHHHH------------HHH-------H--hCCcEEEeecCCCCChhHHhhhhc
Q psy785 71 EERVV-----GKEQGAS------------LAR-------A--FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~~~-----~~~~~~~------------~~~-------~--~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
...-. +.+..++ +.+ + .++..+.+||.+|.|.+++|..+-
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~ 260 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD 260 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence 53210 0011111 001 1 146889999999999999998754
No 313
>KOG0461|consensus
Probab=98.28 E-value=7.2e-06 Score=54.55 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=59.1
Q ss_pred CceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEeeCCCCCCcccc-
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPMVLVGNKCDLEEERVV- 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~- 75 (112)
++.+.|+||+.. +++..+.+ .|..++++|+.....-+...- .+.++.. ...++|.||+|..++.+.
T Consensus 71 q~tlvDCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ 141 (522)
T KOG0461|consen 71 QFTLVDCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRA 141 (522)
T ss_pred eeEEEeCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhh
Confidence 368999999765 44555544 488899999865432222111 2222322 467888999998654221
Q ss_pred -cHHH-HHHHHHHh-------CCcEEEeecCCC----CChhHHhhhhc
Q psy785 76 -GKEQ-GASLARAF-------ACTFLETSAKAK----VNSWLCVECTN 110 (112)
Q Consensus 76 -~~~~-~~~~~~~~-------~~~~~~~Sa~~~----~~v~~~~~~l~ 110 (112)
..++ ..+..+.+ +.|++++||+.| .++.++.+.+-
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~ 189 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALE 189 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHH
Confidence 1112 22222222 259999999999 56666665543
No 314
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.26 E-value=7.9e-06 Score=46.21 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=54.0
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeec
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
...+++.+++++++++.+...+++.+ |...+.... ..+.|.++++||.|+.+......+. +.+++++|+
T Consensus 40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~ 108 (124)
T smart00010 40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSA 108 (124)
T ss_pred cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhC
Confidence 34567889999999999999998765 777765533 3468899999999985433333322 224566788
Q ss_pred CCCCChh
Q psy785 97 KAKVNSW 103 (112)
Q Consensus 97 ~~~~~v~ 103 (112)
++|.|+.
T Consensus 109 ~~~~~~~ 115 (124)
T smart00010 109 KTPEEGE 115 (124)
T ss_pred CCcchhh
Confidence 8888874
No 315
>KOG3886|consensus
Probab=98.20 E-value=7.5e-06 Score=51.61 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=47.1
Q ss_pred ceEEeCCCcccchh-----hHHhhcccCCEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTA-----MRDLYMKNGQGFILVYSITAQSTFNDL---SDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.+||++||+.+-. .....+++.++++++||++..+-..++ ..-++.+.++. +.-.+.....|+|+..
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcc
Confidence 67899999996432 333458899999999999876533333 33344455543 4566777889999975
No 316
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.20 E-value=1.5e-05 Score=45.01 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=37.3
Q ss_pred ceEEeCCCcccc----------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAGTEQF----------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+.++||||.... ....+ .+..+|++++|+|.+++.. +.....+..+. ...|+++|.||
T Consensus 49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 49 FILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp EEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred EEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence 579999996431 12222 3478999999999877422 22223333331 56899999998
No 317
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.14 E-value=4.2e-05 Score=47.12 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=59.5
Q ss_pred ceEEeCCCcccch--------hhH---HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFT--------AMR---DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~--------~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~ 69 (112)
+.++||||..+.. .+. .....++|++++|++..+. +-+. ...+..+.+.-+. .-.+++++.|+.|.
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 6899999955431 111 1234689999999998762 2111 1223333332221 23588899999986
Q ss_pred CCcccc------cHHHHHHHHHHhCCcEEEee-----cCCCCChhHHhhhhc
Q psy785 70 EEERVV------GKEQGASLARAFACTFLETS-----AKAKVNSWLCVECTN 110 (112)
Q Consensus 70 ~~~~~~------~~~~~~~~~~~~~~~~~~~S-----a~~~~~v~~~~~~l~ 110 (112)
...... .....+...+..+-.++..+ +..+.++.++++.+.
T Consensus 129 l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~ 180 (196)
T cd01852 129 LEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVE 180 (196)
T ss_pred cCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHH
Confidence 543211 11233444444444454444 455678888887764
No 318
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.14 E-value=2e-05 Score=38.93 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=28.5
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
=.+++++++|++... +++.....+.+++..- .++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 358899999997653 6777767777776642 4799999999998
No 319
>KOG1191|consensus
Probab=98.10 E-value=4.8e-06 Score=57.25 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=63.8
Q ss_pred ceEEeCCCccc-chh--------hHHhhcccCCEEEEEEeC--CChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEee
Q psy785 2 LEILDTAGTEQ-FTA--------MRDLYMKNGQGFILVYSI--TAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGN 65 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~--------~~~~~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~n 65 (112)
+.+.||||..+ ... ..+..++.+|++++|+|+ +.-.+-..+.+.+.....-.. ....|.+++.|
T Consensus 318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 318 VRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN 397 (531)
T ss_pred EEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence 67899999765 221 223347789999999998 333333333333333222110 12378999999
Q ss_pred CCCCCCc-ccccHHHHHHHHHHh---CC-cEEEeecCCCCChhHHhhhhcc
Q psy785 66 KCDLEEE-RVVGKEQGASLARAF---AC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 66 K~D~~~~-~~~~~~~~~~~~~~~---~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|.|+... ++... ....+.... .+ .+.++|+++++|++.+...+.+
T Consensus 398 k~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 398 KSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred hhhccCccccccC-CceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 9998754 22111 011111111 23 4556999999999998877643
No 320
>KOG3905|consensus
Probab=98.09 E-value=0.00017 Score=47.91 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCcEEEEeeCCCCC----Cccc-------ccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 57 DVPMVLVGNKCDLE----EERV-------VGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 57 ~~p~ivv~nK~D~~----~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
++|+++|++|+|.. .+.+ .....++++|-.+|..++.+|++...|++-+.+.++
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 48999999999973 1111 123346778888999999999999999998877765
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.07 E-value=1.3e-05 Score=47.87 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=42.8
Q ss_pred ceEEeCCCccc----chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 2 LEILDTAGTEQ----FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.|+||||... ...++..++..+|++++|.+.++..+-.....+...... .....++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 67999999643 235777888999999999999886554444444333332 334588888984
No 322
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.06 E-value=0.00012 Score=49.54 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=62.9
Q ss_pred ceEEeCCCcccc-hh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--H
Q psy785 2 LEILDTAGTEQF-TA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 77 (112)
+.|.||.|+|.| +. ++...-...|-.++++-.++.-+.- .+.-+.-+.. -..|++++.+|+|+.++.... .
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a----~~lPviVvvTK~D~~~ddr~~~v~ 277 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA----MELPVIVVVTKIDMVPDDRFQGVV 277 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh----hcCCEEEEEEecccCcHHHHHHHH
Confidence 578999999987 33 3344455789999999887654321 1111222222 468999999999987532110 0
Q ss_pred HHHH----------------------HHH-HHh-C-CcEEEeecCCCCChhHHhhhh
Q psy785 78 EQGA----------------------SLA-RAF-A-CTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 78 ~~~~----------------------~~~-~~~-~-~~~~~~Sa~~~~~v~~~~~~l 109 (112)
++.. ..+ +.. + .|++.+|+.+|.|++-+.+.+
T Consensus 278 ~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 278 EEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 0100 011 111 1 389999999999987665543
No 323
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.04 E-value=5.3e-05 Score=48.29 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=41.2
Q ss_pred CceEEeCCCccc-------------chhhHHhhccc-CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 1 MLEILDTAGTEQ-------------FTAMRDLYMKN-GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 1 ~~~i~Dt~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
.|.+.||||... ...+...++++ .+.+++|+|.+..-.-.........+. ..+.|+++|+||
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViTK 201 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVITK 201 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEEC
Confidence 378999999642 12345557774 458888998754322111112222222 256899999999
Q ss_pred CCCCC
Q psy785 67 CDLEE 71 (112)
Q Consensus 67 ~D~~~ 71 (112)
.|..+
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99865
No 324
>KOG0099|consensus
Probab=97.97 E-value=1.5e-05 Score=51.27 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
|+.+|.+||.+-+..|-.++.++.++++|+..+.- ..+......++.+++..-...+.+|++.||.|+.
T Consensus 204 FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 204 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred eeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 68899999999999999999999999999987542 1222223345555554434568899999999974
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.94 E-value=1.9e-05 Score=51.46 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=40.1
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+-+++.||+|+.+......+...+..+.. ..+++++||++|.|++++.++|.+
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999642222233333334433 458999999999999999999865
No 326
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.91 E-value=0.00045 Score=41.85 Aligned_cols=81 Identities=23% Similarity=0.188 Sum_probs=55.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+-++|||+... ......+..+|.+++++..+. .+...+..+.+.+.+ .+.|+.+|.||.|.... ...+..
T Consensus 95 ~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~---~~~~~~ 164 (179)
T cd03110 95 LIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLNDE---IAEEIE 164 (179)
T ss_pred EEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc---hHHHHH
Confidence 56899996542 233455688999999999874 456666666665554 34678899999996432 244566
Q ss_pred HHHHHhCCcEE
Q psy785 82 SLARAFACTFL 92 (112)
Q Consensus 82 ~~~~~~~~~~~ 92 (112)
++.++.+++++
T Consensus 165 ~~~~~~~~~vl 175 (179)
T cd03110 165 DYCEEEGIPIL 175 (179)
T ss_pred HHHHHcCCCeE
Confidence 67777787765
No 327
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.90 E-value=2.7e-05 Score=47.81 Aligned_cols=53 Identities=21% Similarity=0.019 Sum_probs=41.8
Q ss_pred cEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785 59 PMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 59 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
-=++|+||.|+.+.-..+.+...+-+++. +.+++++|+++|.|++++.+++..
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHh
Confidence 45788999999765555566666666665 459999999999999999998754
No 328
>KOG0466|consensus
Probab=97.88 E-value=2.5e-05 Score=51.28 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=62.8
Q ss_pred CceEEeCCCcccchhhHHhhccc---CCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKN---GQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~---~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
++.|.|+||++-.-+ ..+.+ .|+.++++-.+. |.+-+.+.. -++.+ -+.++++-||+|+..+.
T Consensus 126 HVSfVDCPGHDiLMa---TMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~-----LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMA---TMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK-----LKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCchHHHHH---HHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh-----hceEEEEechhhhhhHH
Confidence 467899999885432 22333 366666665433 334444322 12332 25788899999997654
Q ss_pred cccH--HHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGK--EQGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~--~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..+ +..+.+.+.- +.|++++||.-++|++.+.+.++.
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivk 238 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVK 238 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHh
Confidence 4322 2233444432 569999999999999999988764
No 329
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.82 E-value=0.00045 Score=48.10 Aligned_cols=109 Identities=15% Similarity=0.169 Sum_probs=73.4
Q ss_pred ceEEeCCCcccchhhHHhhccc----CCEEEEEEeCCChhh-HHHHHHHHHHHHhhc-----------------------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKN----GQGFILVYSITAQST-FNDLSDLREQILRVK----------------------- 53 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~----------------------- 53 (112)
+.+|-..|...+..+....+.. --.+++|+|.+.|.. ++.+..|+.-+.++.
T Consensus 75 l~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~ 154 (472)
T PF05783_consen 75 LNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQE 154 (472)
T ss_pred eeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5788888766666666554432 367889999999864 345666654442221
Q ss_pred -------C------------------------C-------CCCcEEEEeeCCCCCC----cc-------cccHHHHHHHH
Q psy785 54 -------D------------------------T-------DDVPMVLVGNKCDLEE----ER-------VVGKEQGASLA 84 (112)
Q Consensus 54 -------~------------------------~-------~~~p~ivv~nK~D~~~----~~-------~~~~~~~~~~~ 84 (112)
. . -++|++||++|+|... +. ....+.++.+|
T Consensus 155 Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c 234 (472)
T PF05783_consen 155 YVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC 234 (472)
T ss_pred hhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 0 0 1379999999999632 11 12234467788
Q ss_pred HHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 85 RAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 85 ~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
-.+|..++.||++...+++.+.+.+.
T Consensus 235 L~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 235 LKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred HhcCCeEEEeeccccccHHHHHHHHH
Confidence 88899999999999999987776653
No 330
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.79 E-value=0.00077 Score=46.34 Aligned_cols=85 Identities=9% Similarity=0.078 Sum_probs=55.0
Q ss_pred hhcc-cCCEEEEEE-eCC-----ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785 19 LYMK-NGQGFILVY-SIT-----AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF 91 (112)
Q Consensus 19 ~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 91 (112)
..+. .++..++|. |.+ .....+.-.+|+.++++ .++|++++.||.|-..+. ......++..+++.++
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv 212 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV 212 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence 3445 788888888 663 11233334567777776 579999999999933212 2334445666788898
Q ss_pred EEeecCCC--CChhHHhhhh
Q psy785 92 LETSAKAK--VNSWLCVECT 109 (112)
Q Consensus 92 ~~~Sa~~~--~~v~~~~~~l 109 (112)
+.+|+.+- ..|..+++.+
T Consensus 213 l~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 213 LAMDVESMRESDILSVLEEV 232 (492)
T ss_pred EEEEHHHcCHHHHHHHHHHH
Confidence 88888653 3566666554
No 331
>PTZ00258 GTP-binding protein; Provisional
Probab=97.76 E-value=0.00056 Score=46.56 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=29.4
Q ss_pred CCcEEEEeeCC--CCCCcccccHHHHHHHHHHh-CCcEEEeecCCCC
Q psy785 57 DVPMVLVGNKC--DLEEERVVGKEQGASLARAF-ACTFLETSAKAKV 100 (112)
Q Consensus 57 ~~p~ivv~nK~--D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 100 (112)
.+|+++++|+. |+........+...+++... +.+++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 48999999999 76221222344555666666 4789999986543
No 332
>KOG1143|consensus
Probab=97.63 E-value=0.00033 Score=47.38 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=62.7
Q ss_pred CceEEeCCCcccchhhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc----
Q psy785 1 MLEILDTAGTEQFTAMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV---- 74 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---- 74 (112)
.+.|+|.+|+.+|....-.-+. -.+..+++++....-.+. .+.-+..+.. -++|+.++.+|+|+..+..
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~t 324 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKT 324 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH----hCCCeEEEEEeeccccchhHHHH
Confidence 3679999999998653332222 367888888876543321 1222333443 4589999999999865311
Q ss_pred --------------------ccHHHHHHHHHHh---C-CcEEEeecCCCCChhHHhhh
Q psy785 75 --------------------VGKEQGASLARAF---A-CTFLETSAKAKVNSWLCVEC 108 (112)
Q Consensus 75 --------------------~~~~~~~~~~~~~---~-~~~~~~Sa~~~~~v~~~~~~ 108 (112)
.+..++...+++. + .|+|.+|+.+|+|++-+...
T Consensus 325 v~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 325 VKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred HHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 1122222222221 2 48999999999998755443
No 333
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.0004 Score=45.56 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=56.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccccc-
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVG- 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~- 76 (112)
.-..|+||+.+|-...-.-..+.|+.|+|+..++.. +-+.+ + +.+ .-+.| ++++.||+|+.++++..
T Consensus 77 yahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---L--lar---qvGvp~ivvflnK~Dmvdd~elle 148 (394)
T COG0050 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---L--LAR---QVGVPYIVVFLNKVDMVDDEELLE 148 (394)
T ss_pred EEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---h--hhh---hcCCcEEEEEEecccccCcHHHHH
Confidence 346799999998654444456789999999988743 33332 1 111 14565 56678999998755432
Q ss_pred --HHHHHHHHHHhCC-----cEEEeecCC
Q psy785 77 --KEQGASLARAFAC-----TFLETSAKA 98 (112)
Q Consensus 77 --~~~~~~~~~~~~~-----~~~~~Sa~~ 98 (112)
..+.+++..++++ |++.-||..
T Consensus 149 lVemEvreLLs~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 149 LVEMEVRELLSEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence 2234556667764 677667654
No 334
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.55 E-value=0.0011 Score=43.86 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=38.7
Q ss_pred CceEEeCCCcccchhhH-------Hhhc--ccCCEEEEEEeCCC--hhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCC
Q psy785 1 MLEILDTAGTEQFTAMR-------DLYM--KNGQGFILVYSITA--QSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD 68 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~-------~~~~--~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D 68 (112)
.+.+|||||..+..... ..++ .+.|++++|...+. ....+ ...+..+...-+. .-.+.|++.|+.|
T Consensus 87 ~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 87 TLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 37899999977542211 1111 26899999965432 22121 1222333332111 2357899999999
Q ss_pred CCCc
Q psy785 69 LEEE 72 (112)
Q Consensus 69 ~~~~ 72 (112)
..++
T Consensus 165 ~~~p 168 (313)
T TIGR00991 165 FSPP 168 (313)
T ss_pred cCCC
Confidence 7643
No 335
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.55 E-value=0.0023 Score=43.29 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=28.9
Q ss_pred CCcEEEEeeCCCCC-CcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 57 DVPMVLVGNKCDLE-EERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 57 ~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.+|+++++|+.|.. .......+...+++.+.+.+++++||.-
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 38999999999852 1112224555667767788999999853
No 336
>KOG0705|consensus
Probab=97.54 E-value=0.00019 Score=50.44 Aligned_cols=94 Identities=18% Similarity=0.394 Sum_probs=71.0
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--CcccccHHHHHHHHH-HhCCcEEEe
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EERVVGKEQGASLAR-AFACTFLET 94 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (112)
..+-..+|++||||...+..+++.+..+...+..+.....+|.++++++.-.. ..+.+......+.+. ...+.+|++
T Consensus 90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et 169 (749)
T KOG0705|consen 90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET 169 (749)
T ss_pred hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence 34556789999999999999999988877777766555678999888876543 234444555555444 456799999
Q ss_pred ecCCCCChhHHhhhhcc
Q psy785 95 SAKAKVNSWLCVECTND 111 (112)
Q Consensus 95 Sa~~~~~v~~~~~~l~~ 111 (112)
+|..|.++..+|+.+.+
T Consensus 170 ~atyGlnv~rvf~~~~~ 186 (749)
T KOG0705|consen 170 CATYGLNVERVFQEVAQ 186 (749)
T ss_pred chhhhhhHHHHHHHHHH
Confidence 99999999999987653
No 337
>KOG3887|consensus
Probab=97.50 E-value=0.0037 Score=40.14 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=63.0
Q ss_pred ceEEeCCCcccchh---hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCc-cccc
Q psy785 2 LEILDTAGTEQFTA---MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEE-RVVG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~-~~~~ 76 (112)
|++||.|||-.+.. -....++++-++++++|..+ +-.+.+.+.-.-+.+.... +++-+=++..|.|=..+ -.+.
T Consensus 77 f~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie 155 (347)
T KOG3887|consen 77 FQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE 155 (347)
T ss_pred eEEeecCCccccCCCccCHHHHHhccCeEEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh
Confidence 68999999986532 34556889999999999754 3444444433333333222 56888889999995432 1111
Q ss_pred HH-HH----HHHHHHhC---C--cEEEeecCCCCChhHHhhhhcc
Q psy785 77 KE-QG----ASLARAFA---C--TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 77 ~~-~~----~~~~~~~~---~--~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+ .+ ..-....| + .++-+| .-.+.+.|.|.++++
T Consensus 156 tqrdI~qr~~d~l~d~gle~v~vsf~LTS-IyDHSIfEAFSkvVQ 199 (347)
T KOG3887|consen 156 TQRDIHQRTNDELADAGLEKVQVSFYLTS-IYDHSIFEAFSKVVQ 199 (347)
T ss_pred hHHHHHHHhhHHHHhhhhccceEEEEEee-ecchHHHHHHHHHHH
Confidence 11 11 11111122 2 344444 445778888887664
No 338
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.45 E-value=0.0005 Score=45.72 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=58.5
Q ss_pred CCcc-cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785 8 AGTE-QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA 86 (112)
Q Consensus 8 ~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 86 (112)
+|+. ++.......+..+|+++.|+|+-+|.+... ..+.+.. .+.|.++|+||.|+.+... ..+-...+.++
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~ 89 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYFKKE 89 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence 5543 455666677889999999999988764322 2223322 3456699999999975333 12222223333
Q ss_pred hCCcEEEeecCCCCChhHHh
Q psy785 87 FACTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 87 ~~~~~~~~Sa~~~~~v~~~~ 106 (112)
.+...+.++++.+.+...+.
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred CCCccEEEEeecccCccchH
Confidence 46677888999888766555
No 339
>KOG1954|consensus
Probab=97.40 E-value=0.00053 Score=46.35 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=45.1
Q ss_pred CceEEeCCCccc-----------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 1 MLEILDTAGTEQ-----------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 1 ~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
++.+.||||.-. |.....=+.+.+|.++++||...-+-.+.....+..+.. ..-.+-+|.||.|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence 368999999332 233444467899999999998766544444444555544 33466778999998
Q ss_pred CC
Q psy785 70 EE 71 (112)
Q Consensus 70 ~~ 71 (112)
.+
T Consensus 224 Vd 225 (532)
T KOG1954|consen 224 VD 225 (532)
T ss_pred cC
Confidence 65
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.37 E-value=0.0009 Score=40.62 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=27.4
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 25 QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 25 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
|++++|+|+..+.+-.. ..+...+. ....+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcCC
Confidence 78999999977632211 11222211 1124589999999999964
No 341
>KOG0467|consensus
Probab=97.34 E-value=0.00062 Score=49.49 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=45.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.++|+||+-+|.+...+..+=+|+.+.++|+...-..+.. ..+.+.+. .+..+++|.||+|
T Consensus 74 ~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 74 INLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred EEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH----ccCceEEEEehhh
Confidence 67999999999999999888999999999998654322221 11222222 4567889999999
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.26 E-value=0.0032 Score=41.02 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=25.3
Q ss_pred CcEEEEeeCCCCCC-cccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 58 VPMVLVGNKCDLEE-ERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 58 ~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
+|+++++|+.|..- ...........++...+.+++++||.-
T Consensus 196 KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~ 237 (274)
T cd01900 196 KPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred CCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHH
Confidence 79999999998311 111112233444555677899999853
No 343
>KOG0465|consensus
Probab=97.25 E-value=0.00052 Score=48.80 Aligned_cols=63 Identities=27% Similarity=0.310 Sum_probs=46.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+.++||||+-+|..-....++-.|+++++++....-.-+...-|.. +.+ .++|.+.+.||+|.
T Consensus 106 iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r----y~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 106 INIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR----YNVPRICFINKMDR 168 (721)
T ss_pred eEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh----cCCCeEEEEehhhh
Confidence 6899999999998877778888899999988744322222233432 233 56999999999995
No 344
>KOG0460|consensus
Probab=97.24 E-value=0.0025 Score=42.75 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=53.7
Q ss_pred EeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCccccc---HHHH
Q psy785 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEERVVG---KEQG 80 (112)
Q Consensus 5 ~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~~~~~---~~~~ 80 (112)
.|+||+-+|-...-.=..+-|+.|+|+..++..=- ..+.-+...++ -++ -++++.||.|+.++.+.. +-+.
T Consensus 122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQ----VGV~~ivvfiNKvD~V~d~e~leLVEmE~ 196 (449)
T KOG0460|consen 122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQ----VGVKHIVVFINKVDLVDDPEMLELVEMEI 196 (449)
T ss_pred CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHH----cCCceEEEEEecccccCCHHHHHHHHHHH
Confidence 58999998865443334567999999999884311 11111111222 233 467788999998544321 2245
Q ss_pred HHHHHHhC-----CcEEEeecCC
Q psy785 81 ASLARAFA-----CTFLETSAKA 98 (112)
Q Consensus 81 ~~~~~~~~-----~~~~~~Sa~~ 98 (112)
+++..++| .|++.-||.-
T Consensus 197 RElLse~gf~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 197 RELLSEFGFDGDNTPVIRGSALC 219 (449)
T ss_pred HHHHHHcCCCCCCCCeeecchhh
Confidence 56666665 4788777654
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0022 Score=42.16 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=48.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH---HHHH----HHhC--CcEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG---ASLA----RAFA--CTFL 92 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~----~~~~--~~~~ 92 (112)
.-+|.++++.-+.-.+.++.++ ..+.+ +-=++|+||.|..... ....+. .... .+.+ .+++
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK---~GimE------iaDi~vINKaD~~~A~-~a~r~l~~al~~~~~~~~~~~W~ppv~ 232 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIK---AGIME------IADIIVINKADRKGAE-KAARELRSALDLLREVWRENGWRPPVV 232 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHH---hhhhh------hhheeeEeccChhhHH-HHHHHHHHHHHhhcccccccCCCCcee
Confidence 4578888877765555555433 23333 4458899999954311 111111 1111 1123 4899
Q ss_pred EeecCCCCChhHHhhhhcc
Q psy785 93 ETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 93 ~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+||..|.|++++.+.+.+
T Consensus 233 ~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 233 TTSALEGEGIDELWDAIED 251 (323)
T ss_pred EeeeccCCCHHHHHHHHHH
Confidence 9999999999999988754
No 346
>KOG0085|consensus
Probab=97.19 E-value=0.00044 Score=43.98 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=70.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
|++.|.+||..-...|-.++++...+++++..+. +...+.-...+..+..+.=-.+.++|++.||.|+.+
T Consensus 201 frmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLE 280 (359)
T KOG0085|consen 201 FRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 280 (359)
T ss_pred eeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhh
Confidence 6789999999888888888888877777765432 223333333444444443335789999999999864
Q ss_pred c----------------ccccHHHHHHHHHHh----C------CcEEEeecCCCCChhHHhhhhc
Q psy785 72 E----------------RVVGKEQGASLARAF----A------CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 72 ~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+ +..+.+.++++.-+. + +--.+++|.+..|+.-+|....
T Consensus 281 ekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 281 EKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred hhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 3 223333444443322 2 1235688999999998887653
No 347
>KOG1424|consensus
Probab=97.16 E-value=0.0023 Score=44.82 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=53.6
Q ss_pred hHHhh---cccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCc
Q psy785 16 MRDLY---MKNGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACT 90 (112)
Q Consensus 16 ~~~~~---~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 90 (112)
+|+.. ++..|+++.++|+-+|--| .++..|..+.. ..+-.++++||.||.+... .....++....+++
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~ 236 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIP 236 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCce
Confidence 45554 6789999999999887533 23444544432 3477899999999986443 34455667777899
Q ss_pred EEEeecCC
Q psy785 91 FLETSAKA 98 (112)
Q Consensus 91 ~~~~Sa~~ 98 (112)
+++-||..
T Consensus 237 ~vf~SA~~ 244 (562)
T KOG1424|consen 237 VVFFSALA 244 (562)
T ss_pred EEEEeccc
Confidence 99999987
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.16 E-value=0.00022 Score=45.79 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=46.7
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH-------hCCcEEE
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA-------FACTFLE 93 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~ 93 (112)
..-+|.+++|..+.-.+.++.++. -+.+ +.=++|+||.|...... ...+.+..... +..|++.
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimE------iaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~ 209 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKA---GIME------IADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLK 209 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-T---THHH------H-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEE
T ss_pred HHhcCeEEEEecCCCccHHHHHhh---hhhh------hccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEE
Confidence 346899999998866665543322 2222 45589999999542211 11222221111 1248999
Q ss_pred eecCCCCChhHHhhhhc
Q psy785 94 TSAKAKVNSWLCVECTN 110 (112)
Q Consensus 94 ~Sa~~~~~v~~~~~~l~ 110 (112)
+||.++.|++++.+.+.
T Consensus 210 tsA~~~~Gi~eL~~~i~ 226 (266)
T PF03308_consen 210 TSALEGEGIDELWEAID 226 (266)
T ss_dssp EBTTTTBSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 99999999999998775
No 349
>KOG0463|consensus
Probab=97.04 E-value=0.0046 Score=42.17 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=57.5
Q ss_pred ceEEeCCCcccchhhH--HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMR--DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+.|+|.+|+|+|-... ...-.-.|..++|+..+-. -+...+.-+..... -..|+.+|.+|+|+-+.... .+.
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa----L~VPVfvVVTKIDMCPANiL-qEt 294 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA----LHVPVFVVVTKIDMCPANIL-QET 294 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh----hcCcEEEEEEeeccCcHHHH-HHH
Confidence 6799999999985422 2222346888888876432 11111122222222 35899999999998643221 111
Q ss_pred ---HHHH--------------------------HHHhCCcEEEeecCCCCChhHHhh
Q psy785 80 ---GASL--------------------------ARAFACTFLETSAKAKVNSWLCVE 107 (112)
Q Consensus 80 ---~~~~--------------------------~~~~~~~~~~~Sa~~~~~v~~~~~ 107 (112)
+.++ ..+.-+|+|.+|-.+|.|+.-+..
T Consensus 295 mKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 295 MKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred HHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 1111 112226899999999999775543
No 350
>KOG0464|consensus
Probab=96.92 E-value=0.00015 Score=49.70 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=50.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++++||||+.+|.-....+++-.|+++.|||.+-.-.-+.+.-|.. ....++|...+.||+|..
T Consensus 104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrq-----adk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-----ADKFKIPAHCFINKMDKL 167 (753)
T ss_pred EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh-----ccccCCchhhhhhhhhhh
Confidence 5789999999999888999999999999999875433344444532 233679999999999964
No 351
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.92 E-value=0.0074 Score=38.82 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=37.6
Q ss_pred ceEEeCCCcccchh----------hHHhhcc--cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCC-CCCcEEEEeeCC
Q psy785 2 LEILDTAGTEQFTA----------MRDLYMK--NGQGFILVYSITAQS-TFNDLSDLREQILRVKDT-DDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----------~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~ 67 (112)
+.+|||||...... ....++. +.++++++..++... ...+ ...+..+.+..+. .-.++++|.||+
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~ 159 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHA 159 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCC
Confidence 68999999664421 0112332 678888887654332 1111 1222333332211 125799999999
Q ss_pred CCCC
Q psy785 68 DLEE 71 (112)
Q Consensus 68 D~~~ 71 (112)
|...
T Consensus 160 d~~~ 163 (249)
T cd01853 160 ASSP 163 (249)
T ss_pred ccCC
Confidence 9854
No 352
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.91 E-value=0.0084 Score=37.52 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=46.1
Q ss_pred ceEEeCCCcccch--------hhH---HhhcccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFT--------AMR---DLYMKNGQGFILVYSITAQST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~--------~~~---~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+.++||||-.+.. .+. .....+.+++++|+....... -...-.++..+... ..-.-++++.+..|.
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~--~~~k~~ivvfT~~d~ 128 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGE--EIWKHTIVVFTHADE 128 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCG--GGGGGEEEEEEEGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccH--HHHhHhhHHhhhccc
Confidence 6799999943211 111 123568999999999873321 11122233333221 112357778888876
Q ss_pred CCccccc-------HHHHHHHHHHhCCcEEEeecC
Q psy785 70 EEERVVG-------KEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 70 ~~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
..+..+. ...+..+.+..+-.+...+.+
T Consensus 129 ~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 129 LEDDSLEDYLKKESNEALQELIEKCGGRYHVFNNK 163 (212)
T ss_dssp GTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECCTT
T ss_pred cccccHHHHHhccCchhHhHHhhhcCCEEEEEecc
Confidence 5433311 122334455556566666655
No 353
>KOG2484|consensus
Probab=96.84 E-value=0.0042 Score=42.26 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=52.3
Q ss_pred cchhhHHhhcccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785 12 QFTAMRDLYMKNGQGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC 89 (112)
Q Consensus 12 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 89 (112)
.|....+..++.+|+++-|.|.-+|.+- ..+..|. .+. ..++..|+|.||+|+.++.. .+....+.+..+.
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V---~~~--~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAV---LQA--HGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHH---Hhc--cCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC
Confidence 4566667778899999999999888643 2344443 221 13488999999999986332 3444455555555
Q ss_pred cEEEeecCCC
Q psy785 90 TFLETSAKAK 99 (112)
Q Consensus 90 ~~~~~Sa~~~ 99 (112)
.+.+.++...
T Consensus 208 tv~fkast~~ 217 (435)
T KOG2484|consen 208 TVAFKASTQM 217 (435)
T ss_pred cceeeccccc
Confidence 5555554443
No 354
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.80 E-value=0.025 Score=36.79 Aligned_cols=78 Identities=22% Similarity=0.169 Sum_probs=51.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+-+.|+|.-- .--.-..+.++|.+++|-.+| +..+.++++.++.... .++|..+|.||.+... . +.+
T Consensus 166 ~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~----f~ip~~iViNr~~~g~-----s-~ie 232 (284)
T COG1149 166 LLIIDSAAGT--GCPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEH----FGIPTGIVINRYNLGD-----S-EIE 232 (284)
T ss_pred eeEEecCCCC--CChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHH----hCCceEEEEecCCCCc-----h-HHH
Confidence 3467777211 112234578999999998876 4566676666555544 5799999999995432 1 567
Q ss_pred HHHHHhCCcEE
Q psy785 82 SLARAFACTFL 92 (112)
Q Consensus 82 ~~~~~~~~~~~ 92 (112)
+++.+.+++++
T Consensus 233 ~~~~e~gi~il 243 (284)
T COG1149 233 EYCEEEGIPIL 243 (284)
T ss_pred HHHHHcCCCee
Confidence 78888777654
No 355
>KOG0448|consensus
Probab=96.79 E-value=0.024 Score=41.21 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=57.0
Q ss_pred ceEEeCCCcc---cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE-EeeCCCCCCcccccH
Q psy785 2 LEILDTAGTE---QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL-VGNKCDLEEERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv-v~nK~D~~~~~~~~~ 77 (112)
+.+.|.||.. ...+....+-.++|++|+|....+..+... .+++....+ .+|-|+ +.||+|....++.+.
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~-----~KpniFIlnnkwDasase~ec~ 281 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE-----EKPNIFILNNKWDASASEPECK 281 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc-----cCCcEEEEechhhhhcccHHHH
Confidence 4678999965 345566677889999999999877654433 334444332 256444 567889876555444
Q ss_pred HHHHHHHHHhC--------CcEEEeecCC
Q psy785 78 EQGASLARAFA--------CTFLETSAKA 98 (112)
Q Consensus 78 ~~~~~~~~~~~--------~~~~~~Sa~~ 98 (112)
+...+-..+++ =.+++|||+.
T Consensus 282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 282 EDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 44433333332 2588899664
No 356
>KOG0459|consensus
Probab=96.78 E-value=0.0017 Score=44.38 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=59.2
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHH---HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFND---LSDLREQILRVKDTDDVPMVLVGNKCDLEEER- 73 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~- 73 (112)
++.+.|+||+..|-...-.=..+||.-++|++.-.. ..|+. .+.- ..+.+. ..-.-.+++.||+|-+.-.
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREh-a~Lakt--~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREH-AMLAKT--AGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHH-HHHHHh--hccceEEEEEEeccCCccCc
Confidence 368899999988754333345678888888886221 12221 1111 111111 1235678889999965311
Q ss_pred -----cccHHHHHHHHHHhC------CcEEEeecCCCCChhHHh
Q psy785 74 -----VVGKEQGASLARAFA------CTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 106 (112)
....++...+.+..| ..++++|..+|.++.+-.
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 112233344444333 368999999999987754
No 357
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.63 E-value=0.034 Score=32.40 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=41.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.++|+|+.. .......+..+|.++++.+.+ ..++......++.+.+.. ...++.++.|+.+-.
T Consensus 47 ~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 47 YIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred EEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 4689999643 333456788999999999986 345554444444444322 345677899999743
No 358
>KOG2486|consensus
Probab=96.53 E-value=0.0055 Score=39.99 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=59.1
Q ss_pred ceEEeCCC----------cccchhhHHhhcc---cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAG----------TEQFTAMRDLYMK---NGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+.+.|.|| ..++..+...|+- +--.+.+++|++.+- .-.....|+.+ .++|..+|.||
T Consensus 185 ~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK 257 (320)
T KOG2486|consen 185 WYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTK 257 (320)
T ss_pred EEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeeh
Confidence 56788998 2233445555532 445666677765432 22233345332 67999999999
Q ss_pred CCCCCcc------c-ccHHH-HH---HHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 67 CDLEEER------V-VGKEQ-GA---SLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 67 ~D~~~~~------~-~~~~~-~~---~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+|..... + ...+. .. +.+.....|++.+|+.++.|+++++-.+.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehh
Confidence 9975321 1 11111 11 11222245888899999999998876554
No 359
>KOG4273|consensus
Probab=96.51 E-value=0.016 Score=37.50 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=55.5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCc---------------------------c-
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEE---------------------------R- 73 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~---------------------------~- 73 (112)
...+++.+||.+....+..+..|+.... .... -.+.+|||.|..+. .
T Consensus 78 pl~a~vmvfdlse~s~l~alqdwl~htd----insfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfg 153 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDALQDWLPHTD----INSFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFG 153 (418)
T ss_pred ceeeEEEEEeccchhhhHHHHhhccccc----cccchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcc
Confidence 3578899999999889999999965432 2222 34457899985421 0
Q ss_pred -------------c---ccHHHHHHHHHHhCCcEEEeecCCC------------CChhHHhhhh
Q psy785 74 -------------V---VGKEQGASLARAFACTFLETSAKAK------------VNSWLCVECT 109 (112)
Q Consensus 74 -------------~---~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~l 109 (112)
. .......+||.+.++++++.||.+. .||+.+|..|
T Consensus 154 isetegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal 217 (418)
T KOG4273|consen 154 ISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGAL 217 (418)
T ss_pred ccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHh
Confidence 0 1122356788888999999998553 4677777665
No 360
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.50 E-value=0.017 Score=39.34 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=42.3
Q ss_pred ceEEeCCCcccchhhHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC--CC---
Q psy785 2 LEILDTAGTEQFTAMRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL--EE--- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~--~~--- 71 (112)
+.+||.||......-... -+..-|.+|++.+.-= +..++ .....+.+ .++|+.+|-+|+|. .+
T Consensus 88 v~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~rf--~~ndv-~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~ 160 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSERF--TENDV-QLAKEIQR----MGKKFYFVRTKVDSDLYNERR 160 (376)
T ss_dssp EEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHH-HHHHHHHH----TT-EEEEEE--HHHHHHHHHC
T ss_pred CeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCCC--chhhH-HHHHHHHH----cCCcEEEEEecccccHhhhhc
Confidence 689999995432222222 3557898888776321 12222 12233433 56899999999995 11
Q ss_pred --ccccc----HHHHHHHHHH----hCC---cEEEeecCCCC
Q psy785 72 --ERVVG----KEQGASLARA----FAC---TFLETSAKAKV 100 (112)
Q Consensus 72 --~~~~~----~~~~~~~~~~----~~~---~~~~~Sa~~~~ 100 (112)
++..+ .+..++.|.+ .|+ ++|-+|+.+-.
T Consensus 161 ~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 161 RKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp C-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 11222 2233444432 233 78889988743
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.39 E-value=0.11 Score=33.97 Aligned_cols=90 Identities=13% Similarity=-0.036 Sum_probs=52.1
Q ss_pred ceEEeCCCcccchhhHH----h---hc-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRD----L---YM-----KNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-++||||........- . .. ..+|..++|+|.+... .++.. ..+.+. - -+.-++.||.|
T Consensus 157 ~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~---~-~~~g~IlTKlD 228 (272)
T TIGR00064 157 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEA---V-GLTGIILTKLD 228 (272)
T ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhh---C-CCCEEEEEccC
Confidence 45899999664332111 1 11 2489999999997532 33222 222221 1 24567799999
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLC 105 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 105 (112)
...... .........+.|+.+++ +|++++++
T Consensus 229 e~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 229 GTAKGG----IILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 754322 23344556688998888 67766554
No 362
>KOG0469|consensus
Probab=96.38 E-value=0.006 Score=43.08 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=45.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
++++|.||+.+|++.....++=.|+.+.|+|.-+.--.+.- .-+.+... .++..+++.||.|.
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHH----hhccceEEeehhhH
Confidence 68999999999999999999999999999998654322221 11222222 34666788999994
No 363
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=95.86 E-value=0.11 Score=37.23 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=31.2
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.++|++|+.||.|...+.+ .+.++++|.+.|+++..+..-.
T Consensus 371 FGvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~ 411 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWA 411 (557)
T ss_pred cCCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccc
Confidence 6799999999999864332 4667889999999887554433
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=95.85 E-value=0.17 Score=34.16 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=52.3
Q ss_pred ceEEeCCCcccchh-h---HHhh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTA-M---RDLY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+-++||+|.-.... + .+.. .-+.|..++|.|.+... ..+.. ..+.+. .+ +--++.||.|......
T Consensus 225 vVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~---~~-~~giIlTKlD~~~~~G 296 (336)
T PRK14974 225 VVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEA---VG-IDGVILTKVDADAKGG 296 (336)
T ss_pred EEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhc---CC-CCEEEEeeecCCCCcc
Confidence 46899999664321 1 1111 23678999999986543 22222 122211 12 3456799999754222
Q ss_pred ccHHHHHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785 75 VGKEQGASLARAFACTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 106 (112)
.....+...+.|+.+++ +|++++++.
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 22344455688998887 688876653
No 365
>KOG0447|consensus
Probab=95.77 E-value=0.077 Score=38.20 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHH
Q psy785 14 TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLAR 85 (112)
Q Consensus 14 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 85 (112)
..+...|..+.+++|+++.-...+ .-+.-...+...++..+...|+|.+|.|+.+....++..++++..
T Consensus 439 ~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 439 FSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred HHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 446677889999999998532222 222233344444555678899999999998766666766666654
No 366
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.74 E-value=0.2 Score=30.59 Aligned_cols=86 Identities=7% Similarity=0.012 Sum_probs=60.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCCh
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS 102 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 102 (112)
..|.++|++|.+...|++.++.=+..+....- -+ .+.++++-..-.+...+...+..+++..+.+|++.+.-.+..+.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff-lG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF-LG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh-cc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 57999999999999998877654333322111 13 34444555544444567788899999999999999988888777
Q ss_pred hHHhhhhc
Q psy785 103 WLCVECTN 110 (112)
Q Consensus 103 ~~~~~~l~ 110 (112)
..+-++|.
T Consensus 142 ~~lAqRLL 149 (176)
T PF11111_consen 142 TSLAQRLL 149 (176)
T ss_pred HHHHHHHH
Confidence 77766654
No 367
>PHA02518 ParA-like protein; Provisional
Probab=95.72 E-value=0.23 Score=30.65 Aligned_cols=64 Identities=13% Similarity=0.188 Sum_probs=38.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 69 (112)
+-|+||||.. .......+..+|.++++...+... ....+..++..+.... .+.| ..++.|+.+.
T Consensus 79 ~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 79 YVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK 145 (211)
T ss_pred EEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence 4689999863 345666788999999999886432 2333333444332221 2344 4456677653
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.72 E-value=0.25 Score=33.05 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=52.0
Q ss_pred ceEEeCCCcccch--------hhHHh---h-cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFT--------AMRDL---Y-MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~--------~~~~~---~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-++||||..... .+.+. . -..++..++|.|.+... .+..... ..+. . -+.-++.||.|
T Consensus 199 ~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~---~-~~~giIlTKlD 270 (318)
T PRK10416 199 VLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA---V-GLTGIILTKLD 270 (318)
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh---C-CCCEEEEECCC
Confidence 4689999965321 11111 1 13578899999997532 3322211 1111 1 24567899999
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLC 105 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 105 (112)
..... -.........+.|+.+++ +|++++++
T Consensus 271 ~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 271 GTAKG----GVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 54322 233445566799999988 67776554
No 369
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.45 E-value=0.28 Score=29.36 Aligned_cols=83 Identities=10% Similarity=0.085 Sum_probs=48.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+-++|||+.... .....+..+|.++++++.+. .++..+..++..+... ......++.|+.+..... ..+...
T Consensus 65 ~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 65 YILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred EEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccccc--hhhHHH
Confidence 468999975432 23445688999999998764 4555555555555442 223567889999864221 122233
Q ss_pred HHHHHhCCcEE
Q psy785 82 SLARAFACTFL 92 (112)
Q Consensus 82 ~~~~~~~~~~~ 92 (112)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444565543
No 370
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.45 E-value=0.2 Score=27.77 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=39.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+-+.|||+... ......+..+|.++++.+.+ ..+......+...+.+........+.+|+|+
T Consensus 45 ~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 45 YVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 46899997543 23345678899999998865 4566666666666655332113456677775
No 371
>KOG2423|consensus
Probab=94.92 E-value=0.24 Score=34.36 Aligned_cols=75 Identities=12% Similarity=0.153 Sum_probs=44.4
Q ss_pred cccCCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 21 MKNGQGFILVYSITAQST--FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
+...|+++-|+|.-+|.. ...+..+ +.+. .+.+-.|.|.||+||.+ ..+...=...+.+++..--|..|..+
T Consensus 211 iDSSDVvvqVlDARDPmGTrc~~ve~y---lkke--~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~n 284 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINN 284 (572)
T ss_pred hcccceeEEeeeccCCcccccHHHHHH---Hhhc--CCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcC
Confidence 457899999999988742 2333333 2332 26678999999999974 22222222333344444445566555
Q ss_pred CCC
Q psy785 99 KVN 101 (112)
Q Consensus 99 ~~~ 101 (112)
.+|
T Consensus 285 sfG 287 (572)
T KOG2423|consen 285 SFG 287 (572)
T ss_pred ccc
Confidence 555
No 372
>KOG0410|consensus
Probab=94.92 E-value=0.093 Score=35.34 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=49.2
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE----EEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM----VLVGNKCDLEEERVVGKEQGASLARAFACTFLETS 95 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 95 (112)
.+..+|.++.|.|++.|+.-+....-+.-+.+. +.+..|. +=|-||+|..+.....+ .++ .+.+|
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~is 322 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGIS 322 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc--------cCC--ccccc
Confidence 356899999999999997655444444433332 2222232 23558888654322111 122 67889
Q ss_pred cCCCCChhHHhhhh
Q psy785 96 AKAKVNSWLCVECT 109 (112)
Q Consensus 96 a~~~~~v~~~~~~l 109 (112)
|++|.|.+++...+
T Consensus 323 altgdgl~el~~a~ 336 (410)
T KOG0410|consen 323 ALTGDGLEELLKAE 336 (410)
T ss_pred cccCccHHHHHHHH
Confidence 99999999988764
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.85 E-value=0.14 Score=39.96 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=43.1
Q ss_pred eEEeCCCcc--------cchhhHHhhc---------ccCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhhcCCC
Q psy785 3 EILDTAGTE--------QFTAMRDLYM---------KNGQGFILVYSITAQ-----STF----NDLSDLREQILRVKDTD 56 (112)
Q Consensus 3 ~i~Dt~g~~--------~~~~~~~~~~---------~~~d~~i~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~ 56 (112)
-++||+|.. .....|..++ +..+|+|+++|+.+- ... ..++..+.++.+..+ .
T Consensus 164 vliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg-~ 242 (1169)
T TIGR03348 164 VLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG-A 242 (1169)
T ss_pred EEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 478999822 1223444442 358999999998542 111 234445555554432 4
Q ss_pred CCcEEEEeeCCCCCC
Q psy785 57 DVPMVLVGNKCDLEE 71 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~ 71 (112)
..|+.++.+|+|+..
T Consensus 243 ~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 243 RFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCEEEEEecchhhc
Confidence 799999999999874
No 374
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=94.83 E-value=0.58 Score=29.64 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=40.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+-++|||+. ........+..+|.++++...+ ..++..+......+.+.. ....+.-++.|+.+..
T Consensus 117 ~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 117 WVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPA 181 (246)
T ss_pred EEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcc
Confidence 458899973 3445566778999999999875 345555542222222211 1235577889999854
No 375
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.60 E-value=0.74 Score=29.77 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=45.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~ 80 (112)
+-|+||+|.-.... ....+..+|.++++... +..++..+......+.......++++. ++.|+.+. ....
T Consensus 120 ~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~ 190 (270)
T PRK13185 120 VILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLI 190 (270)
T ss_pred EEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHH
Confidence 46889986543222 22336679999998865 445565555544444332112456643 77899762 1223
Q ss_pred HHHHHHhCCcEE
Q psy785 81 ASLARAFACTFL 92 (112)
Q Consensus 81 ~~~~~~~~~~~~ 92 (112)
.++.+.++.+++
T Consensus 191 ~~~~~~~g~~vl 202 (270)
T PRK13185 191 DKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHcCCCEE
Confidence 445555555443
No 376
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.55 E-value=0.65 Score=28.95 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=48.3
Q ss_pred ceEEeCCCcccchhhHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~ 79 (112)
+-++||+|......+.. ...+.+|.++++.+.+ ..++..+....+.+.......+.+ .-++.||.+.. ...+.
T Consensus 119 ~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~ 193 (212)
T cd02117 119 VVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETEL 193 (212)
T ss_pred EEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHH
Confidence 35788876443222211 1124799999999874 445544444444444433222333 44789999853 22344
Q ss_pred HHHHHHHhCCcEEE
Q psy785 80 GASLARAFACTFLE 93 (112)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (112)
.+++.+.++.+++.
T Consensus 194 ~~~~~~~~~~~vl~ 207 (212)
T cd02117 194 IDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHcCCCEEE
Confidence 56667777765553
No 377
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=94.49 E-value=1 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=48.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.++|-| .-.......++.++|.+++|.+.+- .++...++.+..+.+.. ....+..++.||.+...
T Consensus 220 ~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 220 FVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLR-PNDPKPILVLNRVGVPK 285 (366)
T ss_pred eEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCCC
Confidence 4577888 3345567788999999999999764 46666677777777654 34567788899998754
No 378
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.49 E-value=0.78 Score=29.60 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=38.6
Q ss_pred eEEeCC-CcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-CcEEEEeeCCCCC
Q psy785 3 EILDTA-GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDD-VPMVLVGNKCDLE 70 (112)
Q Consensus 3 ~i~Dt~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~D~~ 70 (112)
-+.||- |.|.| .|...+++|.++.|+|++. +|+....+.. ++.+ .-+ .++.+|.||.|-.
T Consensus 137 VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taeri~-~L~~---elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 137 VIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAERIK-ELAE---ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred EEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHHHH-HHHH---HhCCceEEEEEeeccch
Confidence 356663 55543 3566789999999999874 4554433332 2222 234 7899999999853
No 379
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=94.06 E-value=0.23 Score=33.87 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCCcEEEEeeCCCCCCccccc--HHHHHHHHHHhCCcEEEeecCC
Q psy785 56 DDVPMVLVGNKCDLEEERVVG--KEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
..+|++.++||.|...... . .+...+++...+.+++++||.-
T Consensus 205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 4589999999999764322 2 3455666677778999999873
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.04 E-value=0.33 Score=28.73 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=33.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-|.||+|..... ...+..+|-++++..++--+..- .....+. ..--+++.||+|
T Consensus 94 ~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~---~~k~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 94 VIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQ---AIKAGIM------EIADIVVVNKAD 148 (148)
T ss_pred EEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHH---HhhhhHh------hhcCEEEEeCCC
Confidence 4689999955322 34788999999999876333221 1111222 234477899987
No 381
>PRK10818 cell division inhibitor MinD; Provisional
Probab=93.79 E-value=1.1 Score=28.87 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=41.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~~ 70 (112)
+.+.|+|+.-... ....+..+|.++++.+.+ ..++..+...+..+..... ..+.+..++.|+.+..
T Consensus 116 ~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 116 FIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred EEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 4689998655332 334468899999998876 3456566555555543211 1123457788988753
No 382
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=93.56 E-value=1 Score=30.37 Aligned_cols=66 Identities=26% Similarity=0.217 Sum_probs=40.2
Q ss_pred cCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhC--CcEEEeec
Q psy785 23 NGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFA--CTFLETSA 96 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 96 (112)
..|+++-|+|+..-..... +.......... -=+++.||.|+.+... .+..+...++.+ .+++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 4689999999876543222 22322222222 3378899999986543 445555566554 47887776
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.49 E-value=0.49 Score=28.22 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=33.8
Q ss_pred eEEeCCCcccchhhHHh--------hcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 3 EILDTAGTEQFTAMRDL--------YMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 3 ~i~Dt~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
-+.||+|..+-...... ..-.+++++.++|....... .....+..++.. -=+++.||+|+
T Consensus 90 I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 90 IVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred EEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 47899996543332222 23358999999997654321 111223333322 22568999985
No 384
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.47 E-value=0.28 Score=32.22 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=25.7
Q ss_pred cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 23 NGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
..|+|+++++++... +-.++ ...+.+. ...++|-|..|+|....
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred CcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccccCH
Confidence 479999999986531 11122 1222232 45789999999998653
No 385
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=93.22 E-value=1.4 Score=28.13 Aligned_cols=64 Identities=8% Similarity=0.226 Sum_probs=40.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D 68 (112)
+.|+||||... ......+..+|.+++.+..+. .++......+..+.+.. ...++|..++.|.++
T Consensus 86 ~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 86 YALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred EEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 46899998653 444556778999998887754 34444434433333221 124678889999986
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.90 E-value=2.3 Score=29.83 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=47.3
Q ss_pred ceEEeCCCcccchh-hHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-MRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|.||||...... +... ..-+++.+++|+|.+... ....+...+.+.. ++ .=++.||.|-.....
T Consensus 185 vVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i-~giIlTKlD~~~~~G- 256 (428)
T TIGR00959 185 VVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GL-TGVVLTKLDGDARGG- 256 (428)
T ss_pred EEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CC-CEEEEeCccCccccc-
Confidence 46899999643321 1111 123578999999987542 2223333333221 22 344589999643222
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.+.......+.|+.+++.
T Consensus 257 ---~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 257 ---AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---HHHHHHHHHCcCEEEEeC
Confidence 245566667888877765
No 387
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.77 E-value=1.7 Score=28.03 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=37.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~ 69 (112)
+-|+||+|...... ....+..+|.++++...+ ..++..+......+.......+.++ -++.|+.+.
T Consensus 118 ~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 118 VILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred EEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 45889987543221 122367899999988764 3444444444333332211234553 367899874
No 388
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.70 E-value=2.5 Score=29.74 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=46.5
Q ss_pred ceEEeCCCcccchh-hH---Hh--hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-MR---DL--YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-++||||...... +. .. ....+|.+++|+|.+... ...+....+.+ .-+ ..-+|.||.|-....
T Consensus 178 vVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~---~l~-i~gvIlTKlD~~a~~-- 248 (437)
T PRK00771 178 VIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE---AVG-IGGIIITKLDGTAKG-- 248 (437)
T ss_pred EEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh---cCC-CCEEEEecccCCCcc--
Confidence 46899999765432 11 11 134689999999986642 11122222221 111 234568999964322
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
-.+.......+.|+.+++.
T Consensus 249 --G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 --GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred --cHHHHHHHHHCcCEEEEec
Confidence 2233455566888877765
No 389
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=92.56 E-value=1.8 Score=27.60 Aligned_cols=62 Identities=13% Similarity=-0.014 Sum_probs=40.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+-++|+|+.-.. .....+..+|.++++...+ ..++..+...+..+.... ..++.++.|+.+.
T Consensus 114 ~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~iviN~~~~ 175 (261)
T TIGR01968 114 YVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG---IEKIHLIVNRLRP 175 (261)
T ss_pred EEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC---CCceEEEEeCcCc
Confidence 468999975432 2334567899999998875 456666666555554432 2367788899874
No 390
>CHL00175 minD septum-site determining protein; Validated
Probab=92.54 E-value=1.9 Score=28.03 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=39.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+-++|||+.-. ......+..+|.++++.+.+ ..++.........+.+.. . ...-++.|+.+-
T Consensus 129 ~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~--~~~~lvvN~~~~ 190 (281)
T CHL00175 129 YILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-I--YNVKLLVNRVRP 190 (281)
T ss_pred EEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-C--CceEEEEeccCh
Confidence 46899997543 23334457789999988865 456666655555555422 1 245677899874
No 391
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=92.47 E-value=0.92 Score=33.73 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=39.1
Q ss_pred ceEEeCCCcccch-------hh---HHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFT-------AM---RDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D 68 (112)
+.++||||..... .+ ...++. ++|++++|..+........-..++..+.+.-+. .-.-.|||.++.|
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 6899999966431 11 111333 589999998765332211111344444443332 1245788889998
Q ss_pred CCC
Q psy785 69 LEE 71 (112)
Q Consensus 69 ~~~ 71 (112)
..+
T Consensus 248 ~lp 250 (763)
T TIGR00993 248 SAP 250 (763)
T ss_pred cCC
Confidence 764
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.41 E-value=1.8 Score=30.38 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=45.4
Q ss_pred ceEEeCCCcccchh-hHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-MRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|+||||...... +... + ..+++-+++|+|.+....-.. ....+.+ .--+.-++.||.|-.....
T Consensus 185 vViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~----~~~~~g~IlTKlD~~argG- 256 (429)
T TIGR01425 185 IIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKD----SVDVGSVIITKLDGHAKGG- 256 (429)
T ss_pred EEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHh----ccCCcEEEEECccCCCCcc-
Confidence 46899999654321 1111 1 235788999999865432221 1122222 1135667799999753221
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.+.......+.|+.+++.
T Consensus 257 ---~aLs~~~~t~~PI~fig~ 274 (429)
T TIGR01425 257 ---GALSAVAATKSPIIFIGT 274 (429)
T ss_pred ---HHhhhHHHHCCCeEEEcC
Confidence 122344455777766654
No 393
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=92.25 E-value=1.6 Score=26.54 Aligned_cols=67 Identities=12% Similarity=0.098 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhh
Q psy785 39 FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 39 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
...+..|+.++.+.. ...-+++|.|-.-... ......++.+.+.++++++.-+++...+..++.+.+
T Consensus 61 ~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 61 PPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF 127 (168)
T ss_pred CHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence 356778888887642 1124888888765433 234567778888899999888888887777766654
No 394
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=92.15 E-value=0.62 Score=28.22 Aligned_cols=66 Identities=17% Similarity=0.057 Sum_probs=45.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+-+.|||+..... ....+..+|.++++++.+. .++..+..+...+..... .....-+|.||.+..+
T Consensus 97 ~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~-~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 97 YIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGK-KLKIIGVVINRVDPGN 162 (195)
T ss_dssp EEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTH-TEEEEEEEEEEETSCC
T ss_pred ceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhcc-ccceEEEEEeeeCCCc
Confidence 4689999755433 4556779999999999864 557777777766665421 1125677899998653
No 395
>KOG3929|consensus
Probab=91.77 E-value=0.65 Score=30.53 Aligned_cols=16 Identities=44% Similarity=0.656 Sum_probs=13.5
Q ss_pred CCCcEEEEeeCCCCCC
Q psy785 56 DDVPMVLVGNKCDLEE 71 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~ 71 (112)
..+|+++||.|+|.-.
T Consensus 189 ~P~PV~IVgsKYDvFq 204 (363)
T KOG3929|consen 189 FPVPVVIVGSKYDVFQ 204 (363)
T ss_pred CCCceEEeccchhhhc
Confidence 3589999999999854
No 396
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=91.62 E-value=0.86 Score=29.73 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=30.5
Q ss_pred cCCEEEEEEeCCCh-----h--hHHHH-HHHHHHHHhhcC--CCCCcEEEEeeCCCCCCc
Q psy785 23 NGQGFILVYSITAQ-----S--TFNDL-SDLREQILRVKD--TDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 23 ~~d~~i~v~d~~~~-----~--s~~~~-~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~ 72 (112)
..+|+|+++|+.+- . .+... ..+...+.+... ....|+.++.||+|+.+.
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~G 84 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPG 84 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccC
Confidence 57999999997431 1 12221 223333333222 157999999999998753
No 397
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=91.11 E-value=2.1 Score=25.57 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=50.2
Q ss_pred ceEEeCCCcccchhhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc-----c
Q psy785 2 LEILDTAGTEQFTAMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE-----R 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~-----~ 73 (112)
+-|.|||+.-. ....... ..+|.++++...+ +.+......+...+.+. +.+ .-++.|+.+...+ .
T Consensus 70 ~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvv~N~~~~~~~~~~~~~ 142 (169)
T cd02037 70 YLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV----NIPILGVVENMSYFVCPHCGKKI 142 (169)
T ss_pred EEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc----CCCeEEEEEcCCcccCCCCCCcc
Confidence 45899997532 2112222 5789999999876 45667777777776653 344 3467899874211 1
Q ss_pred cc-cHHHHHHHHHHhCCcEE
Q psy785 74 VV-GKEQGASLARAFACTFL 92 (112)
Q Consensus 74 ~~-~~~~~~~~~~~~~~~~~ 92 (112)
.. .....+++++.++.+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 143 YIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccCCccHHHHHHHcCCCEE
Confidence 11 12355677777766554
No 398
>KOG2485|consensus
Probab=91.04 E-value=0.72 Score=30.92 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=33.3
Q ss_pred hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 16 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.....++..|.+|=+=|+--|-|-.+. . +.+.. ..+|.|+|.||+|+-+.
T Consensus 39 ~i~~~l~~~D~iiEvrDaRiPLssrn~--~---~~~~~--~~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 39 AIQNRLPLVDCIIEVRDARIPLSSRNE--L---FQDFL--PPKPRIIVLNKMDLADP 88 (335)
T ss_pred HHHhhcccccEEEEeeccccCCccccH--H---HHHhc--CCCceEEEEecccccCc
Confidence 344567889999999998555433221 1 22222 35899999999999753
No 399
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.74 E-value=3.1 Score=26.84 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=36.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~ 69 (112)
+-++||+|.-..... ...+..+|.++++... +..++..+......+.+.....++++ .+|.|+.+.
T Consensus 118 ~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 118 VILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred EEEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 457899864322111 1236788999998765 34455554444443433221234553 467899874
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.82 E-value=2 Score=33.93 Aligned_cols=68 Identities=24% Similarity=0.213 Sum_probs=40.7
Q ss_pred eEEeCCCcccc--------hhhHHhh---------cccCCEEEEEEeCCChh----hH-----HHHHHHHHHHHhhcCCC
Q psy785 3 EILDTAGTEQF--------TAMRDLY---------MKNGQGFILVYSITAQS----TF-----NDLSDLREQILRVKDTD 56 (112)
Q Consensus 3 ~i~Dt~g~~~~--------~~~~~~~---------~~~~d~~i~v~d~~~~~----s~-----~~~~~~~~~i~~~~~~~ 56 (112)
-++||+|.... ...|..+ .+..+|+|+.+|+.+-- .. ..++.-+.++.+.. ..
T Consensus 177 VlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~ 255 (1188)
T COG3523 177 VLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HA 255 (1188)
T ss_pred EEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-cc
Confidence 37899983321 2344433 34689999999985421 11 11222334443322 25
Q ss_pred CCcEEEEeeCCCCCC
Q psy785 57 DVPMVLVGNKCDLEE 71 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~ 71 (112)
..|+.++.||.|+..
T Consensus 256 ~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 256 RLPVYLVLTKADLLP 270 (1188)
T ss_pred CCceEEEEecccccc
Confidence 799999999999875
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.59 E-value=3 Score=24.95 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=44.0
Q ss_pred ceEEeCCCcccchh----hHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA----MRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-+.||+|...+.. ..... ....+.+++|++....... ..+...+.+. .+ ..-++.||.|......
T Consensus 85 ~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~---~~-~~~viltk~D~~~~~g- 156 (173)
T cd03115 85 VVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEA---LG-ITGVILTKLDGDARGG- 156 (173)
T ss_pred EEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhh---CC-CCEEEEECCcCCCCcc-
Confidence 45799999643211 11111 2348999999998654322 2233333332 22 3456679999754221
Q ss_pred cHHHHHHHHHHhCCcEEEe
Q psy785 76 GKEQGASLARAFACTFLET 94 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~ 94 (112)
.....+...++|+..+
T Consensus 157 ---~~~~~~~~~~~p~~~~ 172 (173)
T cd03115 157 ---AALSIRAVTGKPIKFI 172 (173)
T ss_pred ---hhhhhHHHHCcCeEee
Confidence 2223556667766543
No 402
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=89.40 E-value=4.1 Score=26.19 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=34.8
Q ss_pred ceEEeCCCcccchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeC
Q psy785 2 LEILDTAGTEQFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK 66 (112)
+-|+||+|......+. .....-+|.++++...+ +.++..+......+.......+.++. ++.|+
T Consensus 119 ~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 119 FVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred EEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 4688998754322221 12223589999998875 44665555555444443322345554 44455
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=89.20 E-value=6.1 Score=27.88 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=45.5
Q ss_pred ceEEeCCCcccchh-hHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-MRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|.||||.-.... +... . .-.++.+++|+|.+... +..+....+.+. -++ .=+|.||.|-.....
T Consensus 186 vVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~---~~i-~giIlTKlD~~~rgG- 257 (433)
T PRK10867 186 VVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEA---LGL-TGVILTKLDGDARGG- 257 (433)
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhh---CCC-CEEEEeCccCccccc-
Confidence 46899999653311 1111 1 22678889999986532 222222223221 122 234569999643222
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.+.......+.|+.+++.
T Consensus 258 ---~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 ---AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---HHHHHHHHHCcCEEEEeC
Confidence 244556667888877765
No 404
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=88.62 E-value=0.89 Score=25.64 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=18.1
Q ss_pred EeeCCCCCCcccccHHHHHHHHHHhC-CcEEEeecCC
Q psy785 63 VGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKA 98 (112)
Q Consensus 63 v~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 98 (112)
++||+|+.. ..+...++.+++. .+++++||..
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HHH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHHH
Confidence 589999743 3445555666664 5888888863
No 405
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=88.47 E-value=3.7 Score=29.54 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=34.9
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC--CCChhHHhhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA--KVNSWLCVECT 109 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l 109 (112)
.++|++|..|+.....+. ..+..+++|.+.|.+...+..-. |.|-.++-+.+
T Consensus 355 fg~p~VVaiN~F~~Dt~~--Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~V 408 (524)
T cd00477 355 FGVPVVVAINKFSTDTDA--ELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAV 408 (524)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHH
Confidence 679999999999754333 34567888988898777654333 44555554443
No 406
>KOG0781|consensus
Probab=87.77 E-value=7.7 Score=27.98 Aligned_cols=91 Identities=12% Similarity=0.156 Sum_probs=52.3
Q ss_pred ceEEeCCCcccc-hhhHHhh-----cccCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQF-TAMRDLY-----MKNGQGFILVYSIT-AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~~~~~~-----~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+-+.||||...- ..+.++. ....|.+++|-..- .-++.+.+..+...+..+.....+. =++.+|.|...++.
T Consensus 469 VvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id-~~~ltk~dtv~d~v 547 (587)
T KOG0781|consen 469 VVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLID-GILLTKFDTVDDKV 547 (587)
T ss_pred EEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccc-eEEEEeccchhhHH
Confidence 468999996532 2222221 45789999997653 2367888877777776654222222 34689999865332
Q ss_pred ccHHHHHHHHHHhCCcEEEeec
Q psy785 75 VGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
-.+......-+.|++++-.
T Consensus 548 ---g~~~~m~y~~~~pi~fvg~ 566 (587)
T KOG0781|consen 548 ---GAAVSMVYITGKPILFVGV 566 (587)
T ss_pred ---HHHhhheeecCCceEEEec
Confidence 1112222333667777643
No 407
>KOG1547|consensus
Probab=87.07 E-value=2.2 Score=27.89 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCC--cccccHHHHHHHHHHhCCcEEEe
Q psy785 23 NGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEE--ERVVGKEQGASLARAFACTFLET 94 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
.+++|++.+..+.. ++.-+. ..++.+-+ -.-++-|.-|+|... ++..-.+.+++-...+++.+++-
T Consensus 155 RVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYPq 223 (336)
T KOG1547|consen 155 RVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYPQ 223 (336)
T ss_pred eEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcccccc
Confidence 46888888887653 222111 12222322 134555677888542 22222223333334445555443
No 408
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=87.04 E-value=6.7 Score=27.86 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCC--CChhHHhhhh
Q psy785 43 SDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAK--VNSWLCVECT 109 (112)
Q Consensus 43 ~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~~~~~l 109 (112)
.+-..++++ -++|++++.|-.+=. ...+.+...++..+++.+++++++.+- ..|..+++.+
T Consensus 170 ervI~ELk~----igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 170 ERVIEELKE----IGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHHHHHHHH----hCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 344555555 568999999988633 223345566777889999999988653 3555555543
No 409
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=86.85 E-value=6.3 Score=25.37 Aligned_cols=99 Identities=7% Similarity=0.073 Sum_probs=56.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+-|.||.|.... +....+..+|.+++=+-.+..+.-+. ...|+.++.+. ....+|.-++.+++.... .......
T Consensus 86 ~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~-~~~~ip~~Vl~Tr~~~~~-~~~~~~~ 161 (231)
T PF07015_consen 86 FVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKA-ERRDIPAAVLFTRVPAAR-LTRAQRI 161 (231)
T ss_pred EEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHh-hCCCCCeeEEEecCCcch-hhHHHHH
Confidence 468999885532 23445678999999888876543332 23455555432 235689999999987431 1111112
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 106 (112)
..+... ++|++.+......-..++|
T Consensus 162 ~~e~~~--~lpvl~t~l~eR~Af~~m~ 186 (231)
T PF07015_consen 162 ISEQLE--SLPVLDTELHERDAFRAMF 186 (231)
T ss_pred HHHHHh--cCCccccccccHHHHHHHH
Confidence 222222 5777777666554433333
No 410
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=84.98 E-value=8.9 Score=25.37 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=37.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~ 69 (112)
+-++||+|.-....+. ..+..||.++++.+.+ +.++..+...+..+.......+.+. -++.|+.+.
T Consensus 118 ~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 118 IILFDVLGDVVCGGFA-APLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred EEEEecCCcceechhh-hhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 4578998753222221 2356799999988764 4555555554444433222233433 377899873
No 411
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=84.38 E-value=2.4 Score=25.72 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=31.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF 87 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 87 (112)
..+.++.|+|..+..........+....+. -=+++.||+|+.+... ..+...+..++.
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~~-~i~~~~~~ir~l 170 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDEQ-KIERVREMIREL 170 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH---HHHHHHHHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChhh-HHHHHHHHHHHH
Confidence 468999999997654333333333222222 2377899999875331 124445555554
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.86 E-value=15 Score=26.96 Aligned_cols=86 Identities=20% Similarity=0.190 Sum_probs=45.1
Q ss_pred ceEEeCCCcccchhh-HHh--hc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785 2 LEILDTAGTEQFTAM-RDL--YM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-~~~--~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 76 (112)
+-|+||+|....... ... .+ ......++|++.+. +...+...+..+.. ..+.-+|.||.|... .
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG----R 499 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc----c
Confidence 568999996433211 100 01 11234566677653 23333333333322 136678899999742 1
Q ss_pred HHHHHHHHHHhCCcEEEeecCC
Q psy785 77 KEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.-.........+.++.+++.-.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~GQ 521 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTDGQ 521 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeCCC
Confidence 2344555666788877766433
No 413
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=83.61 E-value=5.2 Score=21.62 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=29.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLRE 47 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 47 (112)
+-++|+|+.... .....+..+|.++++.+.+ ..++..+..+++
T Consensus 42 ~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 42 YIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred EEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 458999975432 2336678899999999875 456666555544
No 414
>KOG1486|consensus
Probab=83.05 E-value=3.2 Score=27.40 Aligned_cols=47 Identities=26% Similarity=0.111 Sum_probs=35.0
Q ss_pred CcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++-|-||+|.. +.++..++++.-+ -+-+|+..+.|++.+++.+++
T Consensus 239 ~~ClYvYnKID~v-----s~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe 285 (364)
T KOG1486|consen 239 IKCLYVYNKIDQV-----SIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWE 285 (364)
T ss_pred EEEEEEeecccee-----cHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHH
Confidence 6889999999964 4556666666433 455688888999999998875
No 415
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=82.92 E-value=13 Score=26.70 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=50.3
Q ss_pred cccCCEEEEEEeCCC-------------hhhHHHHHHHHHHHHhhc---CCCCCcEEEEeeCCCCCCcccccHHHHHHHH
Q psy785 21 MKNGQGFILVYSITA-------------QSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERVVGKEQGASLA 84 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~-------------~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 84 (112)
--..|++++|..+-- .+..+.++.=+..+.+|. ...++|++|..||.-... +.....+.+++
T Consensus 317 gl~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt--~~Ei~~i~~~~ 394 (554)
T COG2759 317 GLKPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDT--EAEIAAIEKLC 394 (554)
T ss_pred CCCCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCC--HHHHHHHHHHH
Confidence 346789999876510 122222322222222222 136899999999997443 22345677888
Q ss_pred HHhCCcEEEee--cCCCCChhHHhhhhc
Q psy785 85 RAFACTFLETS--AKAKVNSWLCVECTN 110 (112)
Q Consensus 85 ~~~~~~~~~~S--a~~~~~v~~~~~~l~ 110 (112)
.+.+.++..+. ++-|.|-.++-++++
T Consensus 395 ~~~gv~~~ls~vwakGg~Gg~eLA~kVv 422 (554)
T COG2759 395 EEHGVEVALSEVWAKGGEGGIELAKKVV 422 (554)
T ss_pred HHcCCceeehhhhhccCccHHHHHHHHH
Confidence 88887665433 455666666655543
No 416
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=82.75 E-value=9.7 Score=24.07 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=36.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 69 (112)
+-++|||+.... .....+..+|.++++.+.+. .++............ .+.+ ..++.|+.+.
T Consensus 111 ~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~~----~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 111 FLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVAEK----LGTAILGVVLNRVTR 172 (251)
T ss_pred EEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHHh----cCCceEEEEEECCCc
Confidence 468999975432 23344568999999998754 344443332222222 2344 5688999975
No 417
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=82.59 E-value=1.3 Score=32.02 Aligned_cols=85 Identities=14% Similarity=0.115 Sum_probs=40.9
Q ss_pred ccCCEEEEEEeC-------------CChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCcccccHHHHHHHHH
Q psy785 22 KNGQGFILVYSI-------------TAQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEERVVGKEQGASLAR 85 (112)
Q Consensus 22 ~~~d~~i~v~d~-------------~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 85 (112)
-..|++++|..+ -..+..+.++.=+..+.+|.+ ..++|++|..|+.....+.+ .+...++|+
T Consensus 320 l~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aE--i~~I~~~~~ 397 (557)
T PF01268_consen 320 LKPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAE--IELIRELCE 397 (557)
T ss_dssp ---SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHH--HHHHHHHCC
T ss_pred cCcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHH--HHHHHHHHH
Confidence 357899999764 111223333332233333221 26899999999997643332 355677888
Q ss_pred HhCCcEEEeec--CCCCChhHHhhh
Q psy785 86 AFACTFLETSA--KAKVNSWLCVEC 108 (112)
Q Consensus 86 ~~~~~~~~~Sa--~~~~~v~~~~~~ 108 (112)
+.|.++..+.. +=|.|-.++.+.
T Consensus 398 ~~Gv~~avs~~wa~GGeGa~eLA~~ 422 (557)
T PF01268_consen 398 ELGVRAAVSEHWAKGGEGAVELAEA 422 (557)
T ss_dssp CCCEEEEEC-HHHHGGGGCHHHHHH
T ss_pred hCCCCEEEechhhcccccHHHHHHH
Confidence 88887554442 334454555444
No 418
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=82.29 E-value=9.3 Score=23.54 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=36.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~ 70 (112)
+-|.|||...... ......+.+|.++++.+... .+...+..-...+.+ .+. ..-+|.||.+..
T Consensus 130 ~ViiD~pp~~~~~-~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~----~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 130 YIIIDTPPIGTVT-DAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ----TGSNFLGVVLNKVDIS 193 (204)
T ss_pred EEEEeCCCccccc-hHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh----CCCCEEEEEEeCcccc
Confidence 4578998632211 12234567999999999753 344444444444433 233 455688999864
No 419
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=82.06 E-value=9.8 Score=23.66 Aligned_cols=83 Identities=19% Similarity=0.045 Sum_probs=45.6
Q ss_pred ceEEeCCCcccchh----hHHhh--cccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTA----MRDLY--MKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+-++||||...+.. ....+ ....+-+.+|.+.+... ..+..... .+. .+ +-=++.+|.|....
T Consensus 86 ~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~---~~-~~~lIlTKlDet~~-- 155 (196)
T PF00448_consen 86 LVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEA---FG-IDGLILTKLDETAR-- 155 (196)
T ss_dssp EEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHH---SS-TCEEEEESTTSSST--
T ss_pred EEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhc---cc-CceEEEEeecCCCC--
Confidence 46899999654322 11111 12578889999987643 23322222 221 12 23455999996432
Q ss_pred ccHHHHHHHHHHhCCcEEEeec
Q psy785 75 VGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.-.....+...+.|+-.+|-
T Consensus 156 --~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 156 --LGALLSLAYESGLPISYITT 175 (196)
T ss_dssp --THHHHHHHHHHTSEEEEEES
T ss_pred --cccceeHHHHhCCCeEEEEC
Confidence 23345666677888877664
No 420
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=81.97 E-value=15 Score=27.19 Aligned_cols=52 Identities=19% Similarity=0.062 Sum_probs=33.6
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHH-HhC-CcEEEeecCC--CCChhHHhhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLAR-AFA-CTFLETSAKA--KVNSWLCVECT 109 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~--~~~v~~~~~~l 109 (112)
.++|++|..|+.....+. ..+.++++|. +.| .+...+..-. |.|-.++-+.+
T Consensus 436 fgvpvVVAIN~F~tDT~~--Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~V 491 (625)
T PTZ00386 436 FGVPVVVALNKFSTDTDA--ELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQAL 491 (625)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHH
Confidence 689999999999754333 2456777888 778 4766655433 44555554443
No 421
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.88 E-value=6.4 Score=21.38 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=12.6
Q ss_pred HHhhcccCCEEEEEEeCCChhhH
Q psy785 17 RDLYMKNGQGFILVYSITAQSTF 39 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~ 39 (112)
.+..+..+|.+|++.|..+....
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~ 64 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAM 64 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHH
Confidence 44455556666666665554433
No 422
>KOG0780|consensus
Probab=81.51 E-value=13 Score=26.28 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=25.6
Q ss_pred ceEEeCCCcccc-hhhHHhh-----cccCCEEEEEEeCCChhhHHH
Q psy785 2 LEILDTAGTEQF-TAMRDLY-----MKNGQGFILVYSITAQSTFND 41 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~ 41 (112)
+-|.||+|.... .++.... .-+.|-+++|.|.+-..+-+.
T Consensus 186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA 231 (483)
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence 468999996643 2222221 336899999999976654433
No 423
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=80.94 E-value=14 Score=24.85 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=41.9
Q ss_pred EEeCCCcccchhhHHhhcc--------cCCEEEEEEeCCChhhHH-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 4 ILDTAGTEQFTAMRDLYMK--------NGQGFILVYSITAQSTFN-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 4 i~Dt~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
++.|.|.-.-..+...++. ..++++.++|+.+..... .......++. .-=+++.||+|+.+..
T Consensus 95 vIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-------~AD~IvlnK~Dl~~~~- 166 (318)
T PRK11537 95 VIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVAGEA- 166 (318)
T ss_pred EEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-------hCCEEEEeccccCCHH-
Confidence 5667776554444433321 358899999986533211 1111112221 1336789999987522
Q ss_pred ccHHHHHHHHHHhC--CcEEEee
Q psy785 75 VGKEQGASLARAFA--CTFLETS 95 (112)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~S 95 (112)
+......+..+ .+++.++
T Consensus 167 ---~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 167 ---EKLRERLARINARAPVYTVV 186 (318)
T ss_pred ---HHHHHHHHHhCCCCEEEEec
Confidence 34444455443 3555543
No 424
>KOG1487|consensus
Probab=80.54 E-value=1.9 Score=28.50 Aligned_cols=46 Identities=22% Similarity=0.068 Sum_probs=33.4
Q ss_pred CcEEEEeeCCCCCCcccccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 58 VPMVLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|++.+.||+|-..-.+.+. .+. ...+++||-.+.|++++++.+.+
T Consensus 232 Vp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 232 VPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred eeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhh
Confidence 79999999999643222211 123 35789999999999999988765
No 425
>KOG1534|consensus
Probab=80.40 E-value=2.9 Score=26.85 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=35.7
Q ss_pred eEEeCCCcccchh---hHHhhc---c--c-CCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 3 EILDTAGTEQFTA---MRDLYM---K--N-GQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 3 ~i~Dt~g~~~~~~---~~~~~~---~--~-~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
-++|+|||-.... ..+..+ + + --+++++.|..= -++...+...+..+.... .-.+|.|-|.+|+|+..
T Consensus 101 lifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi-~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 101 LIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI-SLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH-HhcCcchhhhhHHHHhh
Confidence 5899999876432 222221 1 1 234556666421 123333333333332221 14689999999999864
No 426
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=80.28 E-value=3 Score=27.01 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=19.8
Q ss_pred cEEEeecCCCCChhHHhhhhcc
Q psy785 90 TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 90 ~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|++..||+++.|+..+++.+.+
T Consensus 242 pv~~gSa~~~~G~~~ll~~~~~ 263 (268)
T cd04170 242 PVLCGSALTNIGVRELLDALVH 263 (268)
T ss_pred EEEEeeCCCCcCHHHHHHHHHH
Confidence 8999999999999999988753
No 427
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=80.27 E-value=13 Score=24.06 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=33.3
Q ss_pred ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeC
Q psy785 2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK 66 (112)
+-++||+|......+ .......+|.+++++.++ +.++..+...++.+.+.....+.++. ++.|+
T Consensus 118 ~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 118 FVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred EEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 457889774432221 111123679999988764 45666555554444333222344443 44454
No 428
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=80.23 E-value=14 Score=27.17 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=34.3
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC--CCChhHHhhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA--KVNSWLCVECT 109 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~~~~~l 109 (112)
.++|+++..|+.....+.+ .+.+++++.+.+.+...+..-. |.|-.++.+.+
T Consensus 400 fg~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~V 453 (587)
T PRK13507 400 SGINPVVCINAFYTDTHAE--IAIVRRLAEQAGARVAVSRHWEKGGEGALELADAV 453 (587)
T ss_pred cCCCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHHH
Confidence 6799999999997643332 4567788888888766544333 44555554443
No 429
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=78.65 E-value=5.1 Score=25.06 Aligned_cols=35 Identities=9% Similarity=-0.026 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 77 KEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..+|+++.+++++-+|+-...=|..+|+.+..
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 45667889999999999999999889999988764
No 430
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=76.64 E-value=3.8 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=24.5
Q ss_pred ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCC
Q psy785 2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSIT 34 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~ 34 (112)
++|.|.||.-+-- -.....++.+|+++.|+++.
T Consensus 69 ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 69 VEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 6899999955432 23344678999999999985
No 431
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=76.46 E-value=22 Score=24.51 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=22.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA 35 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 35 (112)
+-|+|||+... ......+..+|.+++.+..+.
T Consensus 237 ~IiiD~pp~~~--~~~~~al~aad~viipv~p~~ 268 (387)
T TIGR03453 237 VVVIDCPPQLG--FLTLSALCAATGVLITVHPQM 268 (387)
T ss_pred EEEEeCCccHh--HHHHHHHHHcCeeEEcCCCch
Confidence 46899996543 344556678899999887653
No 432
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=75.18 E-value=13 Score=25.77 Aligned_cols=33 Identities=15% Similarity=-0.080 Sum_probs=24.3
Q ss_pred ceEEeCCCcccc-------hhhHHhhcccCCEEEEEEeCC
Q psy785 2 LEILDTAGTEQF-------TAMRDLYMKNGQGFILVYSIT 34 (112)
Q Consensus 2 ~~i~Dt~g~~~~-------~~~~~~~~~~~d~~i~v~d~~ 34 (112)
+++.|.||...- .......++++|++++|++..
T Consensus 69 i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 69 TEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred EEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 678999996542 223444688999999999974
No 433
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=74.62 E-value=26 Score=24.35 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=33.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHHHHHHHHHhCCcEE
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQGASLARAFACTFL 92 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 92 (112)
++++|++.+.++... +..+. +..+++.. ...-+|-|+.|+|.....+. ..+...+....+++++|
T Consensus 133 RVH~cLYFI~Ptgh~-l~~~D--Ie~Mk~ls--~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 133 RVHACLYFIRPTGHG-LKPLD--IEAMKRLS--KRVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred ceEEEEEEecCCCCC-CCHHH--HHHHHHHh--cccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 478999999876532 11111 11122222 34566777889998643321 12223344444566555
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.88 E-value=24 Score=23.26 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=45.4
Q ss_pred ceEEeCCCcccch-hhHH---hhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFT-AMRD---LYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-++||||..... .... ..+ ...+-.++|+|.+... +.+..+...+.. . -+-=++.+|.|-....
T Consensus 157 ~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~-~~~~~I~TKlDet~~~-- 227 (270)
T PRK06731 157 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----I-HIDGIVFTKFDETASS-- 227 (270)
T ss_pred EEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----C-CCCEEEEEeecCCCCc--
Confidence 4589999966321 1111 122 2456788999976321 222223333222 1 2344568999975422
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
-.+...+...+.|+..++.
T Consensus 228 --G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 228 --GELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred --cHHHHHHHHHCcCEEEEeC
Confidence 2334556667888877664
No 435
>KOG2052|consensus
Probab=72.44 E-value=7.1 Score=27.81 Aligned_cols=46 Identities=7% Similarity=0.151 Sum_probs=38.5
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLR 46 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 46 (112)
++++..+-|.-+|...|+..++|-++.+-+|...++.|+-.-.+.+
T Consensus 212 qI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIY 257 (513)
T KOG2052|consen 212 QIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIY 257 (513)
T ss_pred eeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHH
Confidence 4677788899999999999999999999999999998875544433
No 436
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=72.05 E-value=30 Score=24.04 Aligned_cols=92 Identities=12% Similarity=0.044 Sum_probs=45.7
Q ss_pred ceEEeCCCcccchhh----HHhh--cccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCC-CCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAM----RDLY--MKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTD-DVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~-~~p~ivv~nK~D~~~~~ 73 (112)
+-++||+|....... .... ...+.-.++|++.+.. +.+..+..-+.......... .-+-=++.+|.|-...
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~- 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN- 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence 568999996643221 1111 1234556888888653 34443322222221111000 0123456799996432
Q ss_pred cccHHHHHHHHHHhCCcEEEeecC
Q psy785 74 VVGKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.-.+..+....+.|+..++.=
T Consensus 297 ---~G~~l~~~~~~~lPi~yvt~G 317 (374)
T PRK14722 297 ---LGGVLDTVIRYKLPVHYVSTG 317 (374)
T ss_pred ---ccHHHHHHHHHCcCeEEEecC
Confidence 223345556667777666543
No 437
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.43 E-value=33 Score=24.21 Aligned_cols=85 Identities=19% Similarity=0.090 Sum_probs=46.4
Q ss_pred ceEEeCCCcccch----hhHHhhcc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFT----AMRDLYMK---NGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+-|+||||..... .....++. ...-..+|++.+.. ..+.. ....+.. .+ +-=++.+|.|-...
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~---~~~~f~~----~~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD---IYKHFSR----LP-LDGLIFTKLDETSS- 372 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH---HHHHhCC----CC-CCEEEEeccccccc-
Confidence 4689999965432 12222333 33466777887543 23332 2222221 11 23577999996432
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCC
Q psy785 74 VVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.-.........++|+..++.=.
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~Gq 394 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTNGQ 394 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeCCC
Confidence 2245566777788887776543
No 438
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.39 E-value=33 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=44.7
Q ss_pred ceEEeCCCcccchh----hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA----MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|+||||...... ....+. -..+.+++|.+.+.. ..++...+.. +. .- -+--++.||.|-...
T Consensus 288 ~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~---f~-~l-~i~glI~TKLDET~~--- 357 (407)
T PRK12726 288 HILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPK---LA-EI-PIDGFIITKMDETTR--- 357 (407)
T ss_pred EEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHh---cC-cC-CCCEEEEEcccCCCC---
Confidence 46899999743321 111222 244666777776322 2222222222 11 11 234556999996432
Q ss_pred cHHHHHHHHHHhCCcEEEeecCC
Q psy785 76 GKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.-.+...+...+.|+..+|.=.
T Consensus 358 -~G~~Lsv~~~tglPIsylt~GQ 379 (407)
T PRK12726 358 -IGDLYTVMQETNLPVLYMTDGQ 379 (407)
T ss_pred -ccHHHHHHHHHCCCEEEEecCC
Confidence 2334456667788887776543
No 439
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=71.36 E-value=32 Score=24.04 Aligned_cols=66 Identities=5% Similarity=0.034 Sum_probs=36.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHH-------HHHhhcCCCCCcE-EEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLRE-------QILRVKDTDDVPM-VLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-------~i~~~~~~~~~p~-ivv~nK~D~~ 70 (112)
+-|+|||+...+ +....+..+|.+++.+..+. .++..+...+. .+.+.....+... -++.|+.|..
T Consensus 254 ~IiIDtpP~l~~--~t~~al~aAd~viiPv~p~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 254 VVVIDCPPQLGF--LTLSGLCAATSMVITVHPQM-LDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred EEEEECCCchhH--HHHHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 468999976543 44556677899999887643 34444333332 2222211112223 3788999853
No 440
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=71.25 E-value=32 Score=25.37 Aligned_cols=52 Identities=13% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHH-hCCcEEEeecCC--CCChhHHhhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARA-FACTFLETSAKA--KVNSWLCVECT 109 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~--~~~v~~~~~~l 109 (112)
.++|++|..|+.....+.+ .+..+++|.+ .+.+...+..-. |.|-.++-+.+
T Consensus 392 fg~pvVVaiN~F~~Dt~~E--i~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~V 446 (578)
T PRK13506 392 YGLPVVVAINRFPTDTDEE--LEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAV 446 (578)
T ss_pred cCCCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHH
Confidence 6799999999997543332 4567778887 566766555433 44555554443
No 441
>PLN02759 Formate--tetrahydrofolate ligase
Probab=70.75 E-value=28 Score=25.91 Aligned_cols=52 Identities=17% Similarity=-0.031 Sum_probs=34.6
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhC-CcEEEeecCC--CCChhHHhhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKA--KVNSWLCVECT 109 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~--~~~v~~~~~~l 109 (112)
.++|++|..|+.....+. ..+..+++|.+.| .+...+..-. |.|-.++-+.+
T Consensus 449 fg~pvVVaiN~F~~Dt~~--Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~V 503 (637)
T PLN02759 449 YGVNVVVAINMFATDTEA--ELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAV 503 (637)
T ss_pred cCCCeEEEecCCCCCCHH--HHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHH
Confidence 679999999999764333 3466778888888 4776655443 44555554443
No 442
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=69.91 E-value=30 Score=23.12 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=33.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR 51 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 51 (112)
+.++|||+... ......+..+|.++++.+.+ ..++....+++..+..
T Consensus 207 ~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~ 253 (322)
T TIGR03815 207 LVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGR 253 (322)
T ss_pred EEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhh
Confidence 46899997543 33566788999999999764 4566666666666554
No 443
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=69.91 E-value=24 Score=22.09 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=38.1
Q ss_pred ceEEeCCCccc-chhhHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ-FTAMRDLYMKN--GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+-++|||.... ...+....+.+ ++.+++|...+ ..+.......+..+.... -...-+|.|+....
T Consensus 116 ~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~---~~~~glVlN~~~~~ 183 (217)
T cd02035 116 VIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG---IPVDAVVVNRVLPA 183 (217)
T ss_pred EEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC---CCCCEEEEeCCcCc
Confidence 46899985432 22333334443 58888888875 445666656555555432 12345778988754
No 444
>PRK11670 antiporter inner membrane protein; Provisional
Probab=69.47 E-value=34 Score=23.61 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=33.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~ 70 (112)
+-++|||..-.-..+....+-.+|+++++...... ++.+...-...+.+ .+.|++ +|.|+.+..
T Consensus 218 yvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~~----~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 218 YLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFEK----VEVPVLGIVENMSMHI 282 (369)
T ss_pred EEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHhc----cCCCeEEEEEcCCccc
Confidence 35788984321111222223357999888877543 33333222222222 456654 678998754
No 445
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=69.45 E-value=12 Score=23.99 Aligned_cols=23 Identities=13% Similarity=-0.046 Sum_probs=19.9
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|++..||.++.|+..+++.+..
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~ 232 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITK 232 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHH
Confidence 38888899999999999988753
No 446
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=69.34 E-value=35 Score=23.71 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=35.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHH---HHHHHhhcCC--CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL---REQILRVKDT--DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~i~~~~~~--~~~p~ivv~nK~D~~ 70 (112)
+-|+|||..- ..+....+..+|.+++.+..+ ..++..+... +..+.+..+. .+..+-++.|+.|..
T Consensus 237 ~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 237 VIVIDSAPNL--GIGTINVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred EEEEECCCch--hHHHHHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 4689999654 334445566889999988764 3344443333 2333221100 112234678998854
No 447
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=69.30 E-value=15 Score=21.36 Aligned_cols=41 Identities=15% Similarity=0.303 Sum_probs=28.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~iv 62 (112)
+.-|+-|+.+-++...+=..+..|+..+.+.+.. ..+|+++
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 3457777776666655556778899999885433 5677775
No 448
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=68.89 E-value=4.1 Score=24.94 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=43.6
Q ss_pred EEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHH
Q psy785 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASL 83 (112)
Q Consensus 4 i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 83 (112)
+.|+...-.|+.+|...++++|+=.+-+..+.--.+.-+ .++--.++-|+.|..++..++...++.+
T Consensus 107 ~i~~~~~~ffndlwkr~frr~dag~ih~~gtenidy~~i-------------~dk~k~mcener~~e~~dk~d~~~le~f 173 (237)
T TIGR03488 107 IIDFDEPCFFNDLWKRAFRRADAGKIHFGGTENIDYRLI-------------MDKFKFMCENERDEENEDKIDNHALEKF 173 (237)
T ss_pred ccccCCcchHhHHHHHHHhhccCceecCCCcccceeeeh-------------hhhhhhhcccccchhhhhhhhhHHHHHH
Confidence 344444445677888888888875555544422111110 1122234567777766566655566666
Q ss_pred HHHh--CCcEEEeecCC
Q psy785 84 ARAF--ACTFLETSAKA 98 (112)
Q Consensus 84 ~~~~--~~~~~~~Sa~~ 98 (112)
.++. .++++.+....
T Consensus 174 ~kenid~~~~fyatpt~ 190 (237)
T TIGR03488 174 FKENIDFFPFFYATPTN 190 (237)
T ss_pred HHhcccceeeeeecCCc
Confidence 6653 23555544433
No 449
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.35 E-value=40 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred ceEEeCCCcccchh-hHHh-----hcccCCEEEEEEeCCCh
Q psy785 2 LEILDTAGTEQFTA-MRDL-----YMKNGQGFILVYSITAQ 36 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~ 36 (112)
+-|.||+|...... +... -.-++|=+++|+|..-.
T Consensus 185 vvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 185 VVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred EEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 46899999665432 2221 13478999999998654
No 450
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=68.25 E-value=6.7 Score=16.64 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=11.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEE
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFI 28 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i 28 (112)
+++| |+ +.........--++|++.
T Consensus 2 V~~W-T~--d~~~~~~~~l~~GVDgI~ 25 (30)
T PF13653_consen 2 VYFW-TP--DKPASWRELLDLGVDGIM 25 (30)
T ss_dssp EEEE-T----SHHHHHHHHHHT-SEEE
T ss_pred eEEe-cC--CCHHHHHHHHHcCCCEee
Confidence 5788 76 333444444445777764
No 451
>KOG2655|consensus
Probab=67.62 E-value=22 Score=24.64 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=26.2
Q ss_pred cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 23 NGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 23 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.+++|++.+.++.. .+++ + ..+++.. ....+|-|..|+|....
T Consensus 129 RVH~cLYFI~P~ghgL~p~D-i----~~Mk~l~--~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 129 RVHCCLYFISPTGHGLKPLD-I----EFMKKLS--KKVNLIPVIAKADTLTK 173 (366)
T ss_pred ceEEEEEEeCCCCCCCcHhh-H----HHHHHHh--ccccccceeeccccCCH
Confidence 57899999987654 2322 1 1122222 44677778889997643
No 452
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=66.53 E-value=13 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.0
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|++..||.++.|+..+++.+..
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~ 265 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVD 265 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHH
Confidence 38899999999999999988753
No 453
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=66.36 E-value=45 Score=23.77 Aligned_cols=85 Identities=14% Similarity=0.056 Sum_probs=45.9
Q ss_pred ceEEeCCCcccchh-h---HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-M---RDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~---~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|+||+|...... . ....+ ...+.+++|+|.+... +.+..+...+.. .+ +-=++.+|.|-...
T Consensus 323 vVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~-idglI~TKLDET~k--- 392 (436)
T PRK11889 323 YILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IH-IDGIVFTKFDETAS--- 392 (436)
T ss_pred EEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CC-CCEEEEEcccCCCC---
Confidence 46899999654221 1 11122 2467788889875322 222233333322 12 23456899996542
Q ss_pred cHHHHHHHHHHhCCcEEEeecC
Q psy785 76 GKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.-.+..++...+.|+..++.=
T Consensus 393 -~G~iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 393 -SGELLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred -ccHHHHHHHHHCcCEEEEeCC
Confidence 223345666778888776643
No 454
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=65.68 E-value=35 Score=22.25 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=27.6
Q ss_pred ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy785 2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR 51 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 51 (112)
+-++||+|..-...+ ....+.-+|.++++..++ +.++..+...+..+..
T Consensus 119 ~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll~~i~~ 168 (279)
T PRK13230 119 VVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNICKGIKR 168 (279)
T ss_pred EEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHHHHHHH
Confidence 357899764322221 111234589999998874 5566666554444443
No 455
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=64.69 E-value=47 Score=25.18 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=40.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+-++|||+...... ......-+|+++++... +..+...+...+..+... .....-+|.|+.|..
T Consensus 658 ~IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 658 CVVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL---NGEVTGVFLNMLDPN 721 (754)
T ss_pred EEEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc---CCceEEEEecCCChh
Confidence 46899997654322 23345578999988875 445566666666666542 122345788999854
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.38 E-value=64 Score=24.88 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=46.1
Q ss_pred ceEEeCCCcccch----hhHHhh--cccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFT----AMRDLY--MKNGQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+-|+||+|..... ...... ....+-.++|+|.+. .+.++.+..-+..... .+ +-=+|.+|.|-...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~----~~-i~glIlTKLDEt~~-- 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG----ED-VDGCIITKLDEATH-- 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc----CC-CCEEEEeccCCCCC--
Confidence 4689999943221 111111 234667889999874 3344433222211100 01 23456899996532
Q ss_pred ccHHHHHHHHHHhCCcEEEeecCC
Q psy785 75 VGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.-.+..+....++|+.+++.=.
T Consensus 339 --~G~iL~i~~~~~lPI~yit~GQ 360 (767)
T PRK14723 339 --LGPALDTVIRHRLPVHYVSTGQ 360 (767)
T ss_pred --ccHHHHHHHHHCCCeEEEecCC
Confidence 2233455666788877766433
No 457
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=64.33 E-value=31 Score=21.24 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=37.1
Q ss_pred ccCCEEEEEEeCC-----ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 22 KNGQGFILVYSIT-----AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 22 ~~~d~~i~v~d~~-----~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
+|..++++=+|-| +++.-..+..|+.++.. .++.++++.|... .....+++.++++++.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~----~gi~v~vvSNn~e---------~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKE----AGIKVVVVSNNKE---------SRVARAAEKLGVPFIY 89 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHh----cCCEEEEEeCCCH---------HHHHhhhhhcCCceee
Confidence 3566666665542 34455677899999877 5678888877432 2234455666666664
No 458
>KOG1491|consensus
Probab=62.85 E-value=9.8 Score=26.22 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=24.1
Q ss_pred ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCC
Q psy785 2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSIT 34 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~ 34 (112)
+++.|+||.-+-. --..+.++.+|+++.|+++.
T Consensus 86 l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 86 LTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred EEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 7899999865432 23345688999999999863
No 459
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=61.92 E-value=26 Score=20.59 Aligned_cols=41 Identities=2% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEe
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVG 64 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~ 64 (112)
.+..++.||.+|..|. +..+.|...+..-.- .-++|.|++-
T Consensus 66 T~~li~~aDvVVvrFG-------ekYKQWNaAfDAg~a~AlgKplI~lh 107 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFG-------EKYKQWNAAFDAGYAAALGKPLITLH 107 (141)
T ss_pred HHHHHhhCCEEEEEec-------hHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 4456889999999997 345667665543221 1468888743
No 460
>PRK13556 azoreductase; Provisional
Probab=60.72 E-value=24 Score=21.95 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=31.1
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEee
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DTDDVPMVLVGN 65 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~n 65 (112)
.+..||++|+.+.+-+..---.++.|+..+.... ...++|++++.+
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 4678999999998866443345567877777642 124577777765
No 461
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=60.61 E-value=44 Score=21.69 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=34.2
Q ss_pred ceEEeCCCcccchhhHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCC
Q psy785 2 LEILDTAGTEQFTAMRDLY-MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~ 67 (112)
+-++||+|.--...+.... -..+|.++++...+ +.++..+...++.+.+.....+++++ ++.|+.
T Consensus 121 ~iliD~~~~~~~~al~~~~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 121 FVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred EEEEecCCceeeccccccchhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 3578886633212111000 02588888888764 55666665554444332222455544 677864
No 462
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=60.56 E-value=51 Score=22.48 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=36.5
Q ss_pred ceEEeCCCccc---chhhHHhhcccCCEEEEEEeCCChhhHHH---HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQ---FTAMRDLYMKNGQGFILVYSITAQSTFND---LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-+.|++|... |..... ..-++.+ ++....+..++.. +.+.+..+.+.. ....-.-+|.||.|...
T Consensus 150 yVliD~~gdv~~ggf~l~i~--~~~ad~V-IVVt~pe~~si~~A~~v~kai~~~~~lg-~~~~i~GlViNr~d~~~---- 221 (329)
T cd02033 150 YVLLDFLGDVVCGGFGLPIA--RDMAQKV-IVVGSNDLQSLYVANNVCNAVEYFRKLG-GNVGVAGMVINKDDGTG---- 221 (329)
T ss_pred EEEEecCCcceeccccchhh--hcCCceE-EEeCCchHHHHHHHHHHHHHHHHHHHhC-CCCCceEEEEeCcCCcc----
Confidence 35678877442 211111 1124444 4444444455533 333444443321 11122667889998532
Q ss_pred cHHHHHHHHHHhCCcEE
Q psy785 76 GKEQGASLARAFACTFL 92 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (112)
..+.+++.++++++
T Consensus 222 ---~ie~~ae~lgi~vL 235 (329)
T cd02033 222 ---EAQAFAAHAGIPIL 235 (329)
T ss_pred ---hHHHHHHHhCCCEE
Confidence 23455555665443
No 463
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=60.43 E-value=5.9 Score=25.89 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=20.1
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|++..||.++.|+..+++.+..
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~ 262 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVD 262 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHH
Confidence 38899999999999999988754
No 464
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=59.52 E-value=6.9 Score=28.29 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=20.5
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|++..||.+|.||..+++.+.+
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~ 271 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVE 271 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHH
Confidence 48999999999999999998764
No 465
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=58.71 E-value=30 Score=19.18 Aligned_cols=44 Identities=7% Similarity=-0.112 Sum_probs=27.0
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
.+++||++|..++...+++.....-=+ ... .++|++++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~ElG~--A~a----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAFELGY--AYA----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHHHHHH--HHH----TTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHHHHHH--HHH----CCCEEEEEEcCCcc
Confidence 467899999999985555443322111 111 45899988877654
No 466
>KOG1486|consensus
Probab=58.11 E-value=54 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.3
Q ss_pred ceEEeCCCcccchhh----HH---hhcccCCEEEEEEeCCChhh
Q psy785 2 LEILDTAGTEQFTAM----RD---LYMKNGQGFILVYSITAQST 38 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~----~~---~~~~~~d~~i~v~d~~~~~s 38 (112)
+|+.|.||.-.--+. .+ ...+.||.++.|.|.+..+.
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSED 154 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchh
Confidence 688999985433221 11 23567999999999987653
No 467
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=56.20 E-value=8.6 Score=27.83 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=20.2
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.|++..||.+|.||..+++.+.+
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~ 272 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQ 272 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHH
Confidence 38899999999999999998764
No 468
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=56.12 E-value=40 Score=19.90 Aligned_cols=41 Identities=5% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEe
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVG 64 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~ 64 (112)
.+..++.||++|.-|. +..+.|...+..-.- .-++|.|++-
T Consensus 69 T~~li~~aDvvVvrFG-------ekYKQWNaAfDAg~aaAlgKplI~lh 110 (144)
T TIGR03646 69 TRKLIEKADVVIALFG-------EKYKQWNAAFDAGYAAALGKPLIILR 110 (144)
T ss_pred HHHHHhhCCEEEEEec-------hHHHHHHHHhhHHHHHHcCCCeEEec
Confidence 4456889999999997 445567665543221 1468888743
No 469
>KOG2743|consensus
Probab=55.96 E-value=14 Score=25.19 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEeCCCcccchhhHHhhcc--------cCCEEEEEEeCCC
Q psy785 4 ILDTAGTEQFTAMRDLYMK--------NGQGFILVYSITA 35 (112)
Q Consensus 4 i~Dt~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~ 35 (112)
+..|.|.-.--.+...++- ..|+++-++|+.+
T Consensus 150 llETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 150 LLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred EEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 4566665544443333332 3699999999754
No 470
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=55.35 E-value=37 Score=19.42 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecC
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.+.|++++|.-.... ...++..++++..++|++.+-.-
T Consensus 11 A~rP~il~G~g~~~~----~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 11 AKRPVILAGRGARRS----GAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp -SSEEEEE-HHHHHT----TCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CCCEEEEEcCCcChh----hHHHHHHHHHHHHCCCEEecCcc
Confidence 568999988766422 24677889999999999766433
No 471
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=55.23 E-value=26 Score=21.11 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=28.6
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
....+..+|++|+....-+..---.++.|+..+.. ....++|++++++-
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~-~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP-NALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH-hHhCCCEEEEEEec
Confidence 33456789999999877554322233344443321 12257898888773
No 472
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=55.15 E-value=18 Score=20.24 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=18.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSI 33 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~ 33 (112)
+.+||.-||=+-.......-+++-.++++++.
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~ 69 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPD 69 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCC
Confidence 57888888765433233333456666676654
No 473
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=55.12 E-value=65 Score=22.01 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=20.5
Q ss_pred EEeCCCcccchhhHHhhc-------ccCCEEEEEEeCCC
Q psy785 4 ILDTAGTEQFTAMRDLYM-------KNGQGFILVYSITA 35 (112)
Q Consensus 4 i~Dt~g~~~~~~~~~~~~-------~~~d~~i~v~d~~~ 35 (112)
+..|.|.-.-..+...+. -..++++.++|..+
T Consensus 97 vIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 97 LIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred EEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 567777655444444331 14689999999864
No 474
>KOG0052|consensus
Probab=54.74 E-value=5.9 Score=27.51 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=35.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh--h---hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ--S---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~--~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.+.|.+|+..+......-.+.+|+.++.+..... + +.+...+-...+... ..-.+.++.+||+|..+
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~t--lgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFT--LGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhcc--ccceeeeEEeecccccC
Confidence 57889999887754333335566766666655211 1 111111111111110 12367888899999754
No 475
>KOG1249|consensus
Probab=54.63 E-value=30 Score=25.33 Aligned_cols=84 Identities=12% Similarity=-0.028 Sum_probs=44.2
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh-----------C
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF-----------A 88 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~ 88 (112)
..++.-.+..|.|.++... . ....+...... .-.++.+||.|+.+.... .-......... +
T Consensus 107 ~~~~~~~~~~vvd~~d~p~--~---i~p~~~~~v~~--~~~~v~~n~vdl~p~d~~-~~~c~rc~~l~~~~~vk~~~~en 178 (572)
T KOG1249|consen 107 KQENPALARKVVDLSDEPC--S---IDPLLTNDVGS--PRLFVDGNKVDLLPKDSR-PGYCQRCHSLLHYGMIKAGGGEN 178 (572)
T ss_pred hhhcccceEEeeecccCcc--c---cccchhhcccC--CceEeecccccccccccc-chHHHHHHhhcccceeecccccC
Confidence 3445455666667665432 1 12223332222 236889999998753321 11111111110 1
Q ss_pred ------C-cEEEeecCCCCChhHHhhhhcc
Q psy785 89 ------C-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ------~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+ ....+|+++++|++++.-.+.+
T Consensus 179 ~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd 208 (572)
T KOG1249|consen 179 LNPDFDFDHVDLIRAKTGYGIEELIVMLVD 208 (572)
T ss_pred CCcccchhhhhhhhhhhcccHHHHHHHhhh
Confidence 1 3457789999999998876653
No 476
>PRK10037 cell division protein; Provisional
Probab=54.10 E-value=56 Score=20.92 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=23.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT 34 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~ 34 (112)
+-|+|||+... ......+..+|.+++++..+
T Consensus 120 ~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 120 WILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred EEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC
Confidence 46899997643 34566778899999999874
No 477
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=53.95 E-value=60 Score=21.57 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=32.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDL 69 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~ 69 (112)
.+++++|++++.++.++++....-+=+-++.-+ ..+--+++++.|-|.
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr 110 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDR 110 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCC
Confidence 368999999999998888776443322233221 245678999999994
No 478
>PRK13555 azoreductase; Provisional
Probab=53.57 E-value=51 Score=20.77 Aligned_cols=47 Identities=6% Similarity=0.105 Sum_probs=31.3
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEeeC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DTDDVPMVLVGNK 66 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~nK 66 (112)
.+..||++++++.+-+..---.++.|+..+.... ...++|++++.+.
T Consensus 86 ~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~ 144 (208)
T PRK13555 86 QFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGAR 144 (208)
T ss_pred HHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcC
Confidence 4678999999998876543345567877776531 1246777777653
No 479
>KOG1432|consensus
Probab=53.44 E-value=74 Score=22.13 Aligned_cols=64 Identities=11% Similarity=0.094 Sum_probs=37.0
Q ss_pred cccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccHHHHHHHHHHhC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGKEQGASLARAFA 88 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 88 (112)
.+..|.+++.-|.-...+..+.. .|.+.+.-. -..++| .+++||.-|. ......+...+.....
T Consensus 98 sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~-I~~~IPwA~~lGNHDde---s~ltr~ql~~~i~~lP 163 (379)
T KOG1432|consen 98 SEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPA-IDRKIPWAAVLGNHDDE---SDLTRLQLMKFISKLP 163 (379)
T ss_pred ccCCCEEEEeCCcccccccHhHHHHHHHHhhhH-hhcCCCeEEEecccccc---cccCHHHHHHHHhcCC
Confidence 56899999998875544444333 343333322 235788 5557787775 3444555555555443
No 480
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=53.25 E-value=40 Score=18.94 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=28.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
.+++...++++.. ....+.....+..+.... .++|+.++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 4677777777765 444455556667776654 679999988855
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.33 E-value=76 Score=21.90 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=45.3
Q ss_pred ceEEeCCCcccch--------hhHHh---hcc-cCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFT--------AMRDL---YMK-NGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~--------~~~~~---~~~-~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-+.||+|+-.-. .+.+. ... .++-+++++|.+.. ++++..+. +.+. -++.- ++.+|.|
T Consensus 224 vvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~ea------v~l~G-iIlTKlD 295 (340)
T COG0552 224 VVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEA------VGLDG-IILTKLD 295 (340)
T ss_pred EEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHh------cCCce-EEEEecc
Confidence 4589999954321 11111 111 23447777798765 34544332 2222 22333 3589999
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
-.....+ ...++..++.|+.++..=.
T Consensus 296 gtAKGG~----il~I~~~l~~PI~fiGvGE 321 (340)
T COG0552 296 GTAKGGI----ILSIAYELGIPIKFIGVGE 321 (340)
T ss_pred cCCCcce----eeeHHHHhCCCEEEEeCCC
Confidence 6443222 1346677888888876543
No 482
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.62 E-value=85 Score=22.30 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=44.5
Q ss_pred ceEEeCCCcccchh----hHHhhc--ccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTA----MRDLYM--KNGQGFILVYSITA-QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+.+.||+|...... ....+. ....-.++|++.+. ...+.. +...... .+ +-=++.+|.|-...
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~---~~~~f~~----~~-~~~~I~TKlDEt~~-- 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE---VISAYQG----HG-IHGCIITKVDEAAS-- 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH---HHHHhcC----CC-CCEEEEEeeeCCCC--
Confidence 46899999664322 122221 23456788888874 333333 2222211 12 33456899996432
Q ss_pred ccHHHHHHHHHHhCCcEEEeecC
Q psy785 75 VGKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.-.+..++...++|+..++.=
T Consensus 342 --~G~~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 342 --LGIALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred --ccHHHHHHHHhCCCEEEEECC
Confidence 223345666667777766543
No 483
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=51.07 E-value=15 Score=21.05 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=26.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+..+++.-|++.++....+ ...++..++|++.|.||..|-
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l-------~~lc~~~~vpyv~V~sk~~LG 83 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHL-------PALCEEKNVPYVYVGSKKELG 83 (116)
T ss_pred CCcEEEEecCCCHHHHHHHH-------HHHHHhcCCCEEEeCCHHHHH
Confidence 47777777777655444332 233334679999999988763
No 484
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=50.58 E-value=54 Score=19.74 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=30.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.-++++.--....+.|++.-..|+.+..... +.--++++|||-
T Consensus 82 ~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi--~~qn~vfCgnKn 125 (180)
T COG4502 82 SIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFI--SYQNIVFCGNKN 125 (180)
T ss_pred hhheEEEEEeccCCchhHHHHHHHHHHHCCCC--ChhhEEEecCCC
Confidence 34466666666668899999889987765432 345688888874
No 485
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=50.31 E-value=57 Score=19.86 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS 95 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 95 (112)
...|++++|.-.-. ....+.+.++++..++|++.+-
T Consensus 27 AKRPvIivG~ga~~----~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 27 AKRPLLIVGPENLE----DEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCCcEEEECCCcCc----ccHHHHHHHHHHHHCCCEEEcC
Confidence 46899999987732 1235677888999999988543
No 486
>KOG2733|consensus
Probab=49.71 E-value=81 Score=22.19 Aligned_cols=20 Identities=10% Similarity=0.405 Sum_probs=16.0
Q ss_pred CEEEEEEeCCChhhHHHHHH
Q psy785 25 QGFILVYSITAQSTFNDLSD 44 (112)
Q Consensus 25 d~~i~v~d~~~~~s~~~~~~ 44 (112)
..+|+++|.+|+.|+..+..
T Consensus 63 ~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 63 SSVILIADSANEASLDEMAK 82 (423)
T ss_pred cceEEEecCCCHHHHHHHHh
Confidence 45699999999999877643
No 487
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=49.68 E-value=70 Score=20.77 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=35.0
Q ss_pred ceEEeCCCcccchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCC
Q psy785 2 LEILDTAGTEQFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~ 67 (112)
+-++||+|.--...+. ...+..+|.+++++.. ++.++..+...++.+.+.....+.++. ++.|+.
T Consensus 120 ~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 120 YVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred EEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 3478997643212211 1112368889998865 456776666555554443222345442 566864
No 488
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.95 E-value=95 Score=22.04 Aligned_cols=83 Identities=20% Similarity=0.137 Sum_probs=43.4
Q ss_pred ceEEeCCCcccchh----hHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA----MRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-+.||+|...+.. -...++. ...-..++++.+.. .+++...+..... -+ .--++.+|.|-..
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~-i~~~I~TKlDET~---- 352 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FP-IDGLIFTKLDETT---- 352 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CC-cceeEEEcccccC----
Confidence 46899999665433 2222222 23445566666543 2344444444322 11 2234589999532
Q ss_pred cHHHHHHHHHHhCCcEEEee
Q psy785 76 GKEQGASLARAFACTFLETS 95 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~S 95 (112)
+.-.......+.+.|+-.++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 33444555666676666554
No 489
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=48.31 E-value=38 Score=17.30 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=22.9
Q ss_pred ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCCh
Q psy785 2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQ 36 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~ 36 (112)
+-+.|+++....... .......+|.++++++....
T Consensus 36 ~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 36 YVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 457888875533221 24456788999999987644
No 490
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=46.41 E-value=73 Score=20.03 Aligned_cols=65 Identities=8% Similarity=0.131 Sum_probs=37.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCCcEEEEeeCCCCCCc-ccccHHHHHHHHHHh
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKD----TDDVPMVLVGNKCDLEEE-RVVGKEQGASLARAF 87 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~ 87 (112)
++|+++++-|..+.........|...+.+... ..++|++.|.---|.-.. ....++...++.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 78999999999886543333334443333322 245777766655566432 223345555665554
No 491
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=46.17 E-value=88 Score=20.86 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=39.6
Q ss_pred ceEEeCCCcccc-hhhHHhhcccCCEEEEEEeCCChhhHHH---HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH
Q psy785 2 LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFND---LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 77 (112)
+-++|++|..-- ..........+|.++++.+.+ ..++.. +...+..+.+. +..-.+.-+|.|+.+...
T Consensus 125 ~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~~-~~~v~i~GVV~N~~~~~~------ 196 (296)
T TIGR02016 125 FVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRKL-GGRVGLLGLVVNRDDGSG------ 196 (296)
T ss_pred EEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHHc-CCCCcceEEEEeCCCCcc------
Confidence 457887763210 000111224688888887653 334433 33333333331 111224567889987421
Q ss_pred HHHHHHHHHhCCcEE
Q psy785 78 EQGASLARAFACTFL 92 (112)
Q Consensus 78 ~~~~~~~~~~~~~~~ 92 (112)
..++++++++++++
T Consensus 197 -~~~~~~~~~~i~vL 210 (296)
T TIGR02016 197 -EAQAFAREVGIPVL 210 (296)
T ss_pred -HHHHHHHHcCCCeE
Confidence 23455666665544
No 492
>KOG1533|consensus
Probab=46.04 E-value=38 Score=22.34 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred ceEEeCCCcccchh----hHHh--hcccCC---EEEEEEeC---CChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTA----MRDL--YMKNGQ---GFILVYSI---TAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----~~~~--~~~~~d---~~i~v~d~---~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
.-++|+|||..+.. ++.. .++.-+ +.+-++|. ++|.++-+ ..+..+.... .-..|-+-|.+|+|+
T Consensus 99 Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl-~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 99 YVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATML-HMELPHVNVLSKADL 175 (290)
T ss_pred EEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHH-hhcccchhhhhHhHH
Confidence 45899999886432 1111 122222 34445554 55655433 2333333221 135799999999997
Q ss_pred C
Q psy785 70 E 70 (112)
Q Consensus 70 ~ 70 (112)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 493
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=45.58 E-value=26 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.+.|++++..-.. .++...+.|+++++|++.++..+
T Consensus 80 ~~~P~iIvt~~~~-------~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 80 YNPPCIIVTRGLE-------PPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp TT-S-EEEETTT----------HHHHHHHHHCT--EEEESS-H
T ss_pred CCCCEEEEECcCC-------CCHHHHHHHHHhCCcEEEcCCcH
Confidence 5688888765442 35677888999999999776543
No 494
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=45.06 E-value=13 Score=26.61 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=19.9
Q ss_pred cEEEeecCCCCChhHHhhhhcc
Q psy785 90 TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 90 ~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|+|+-||.+|.||+.+++.+.+
T Consensus 252 PVFFGSAl~NFGV~~~L~~~~~ 273 (528)
T COG4108 252 PVFFGSALGNFGVDHFLDALVD 273 (528)
T ss_pred ceEehhhhhccCHHHHHHHHHh
Confidence 8999999999999999988764
No 495
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=44.63 E-value=73 Score=20.23 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=14.9
Q ss_pred hcccCCEEEEEEeCCChhhH
Q psy785 20 YMKNGQGFILVYSITAQSTF 39 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~ 39 (112)
.+.++|.+++.-|.++....
T Consensus 38 ~~~~~D~viiaGDl~~~~~~ 57 (232)
T cd07393 38 VVAPEDIVLIPGDISWAMKL 57 (232)
T ss_pred cCCCCCEEEEcCCCccCCCh
Confidence 34589999999999865433
No 496
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.40 E-value=1.2e+02 Score=21.80 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=43.9
Q ss_pred ceEEeCCCcccc-hh---hHHhhcc-----cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQF-TA---MRDLYMK-----NGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~-~~---~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+-++||||.... .. .+..+++ ...-.++|+|++... ....+. .... .-+ +-=++.+|.|-..
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~---~~f~----~~~-~~glIlTKLDEt~ 373 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL---KAYE----SLN-YRRILLTKLDEAD 373 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH---HHhc----CCC-CCEEEEEcccCCC
Confidence 458999996522 11 1122221 234678888876543 333322 2221 122 3345689999643
Q ss_pred cccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 72 ERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.. -.+.......+.|+..++.=.
T Consensus 374 ~~----G~il~i~~~~~lPI~ylt~GQ 396 (432)
T PRK12724 374 FL----GSFLELADTYSKSFTYLSVGQ 396 (432)
T ss_pred Cc----cHHHHHHHHHCCCEEEEecCC
Confidence 22 223455566787777666543
No 497
>PRK00170 azoreductase; Reviewed
Probab=44.36 E-value=49 Score=20.22 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=29.9
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEeeC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DTDDVPMVLVGNK 66 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~nK 66 (112)
.+..||++|+...+-...---.++.|+..+.... ...+++++++.+-
T Consensus 83 ~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 141 (201)
T PRK00170 83 EFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSR 141 (201)
T ss_pred HHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeC
Confidence 4678999999998765443334566777764311 1245777777764
No 498
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=44.11 E-value=66 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 24 GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 24 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.|++++..-. ++++....++..+.+ .++|++++|...-..
T Consensus 101 ~dGvVItHGT---DTmeeTA~~L~l~l~----~~kPVVlTGamr~s~ 140 (351)
T COG0252 101 VDGVVITHGT---DTMEETAFFLSLTLN----TPKPVVLTGAMRPAD 140 (351)
T ss_pred CCeEEEeCCC---chHHHHHHHHHHHhc----CCCCEEEeCCCCCCC
Confidence 4899988764 567777777777665 469999999887653
No 499
>PRK13695 putative NTPase; Provisional
Probab=43.42 E-value=72 Score=19.06 Aligned_cols=68 Identities=4% Similarity=0.079 Sum_probs=34.7
Q ss_pred hcccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 20 YMKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
.+++++. +++|--.+ +... ..+...+.... ..+.|++++.+|.... ....++....+..+++++-.+
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~~~~~ 160 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS--PKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYELTPEN 160 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh--HHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEEcchh
Confidence 4556776 57884111 1111 12233333332 3568999999985331 223344455566777775444
Q ss_pred C
Q psy785 99 K 99 (112)
Q Consensus 99 ~ 99 (112)
.
T Consensus 161 r 161 (174)
T PRK13695 161 R 161 (174)
T ss_pred h
Confidence 3
No 500
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=42.98 E-value=10 Score=18.99 Aligned_cols=15 Identities=27% Similarity=0.054 Sum_probs=11.5
Q ss_pred ecCCCCChhHHhhhh
Q psy785 95 SAKAKVNSWLCVECT 109 (112)
Q Consensus 95 Sa~~~~~v~~~~~~l 109 (112)
||++|.|+.|+.+..
T Consensus 44 tAknGgNvKEvme~~ 58 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQA 58 (71)
T ss_dssp HHHSSS-HHHHHHHH
T ss_pred ecccCCCHHHHHHHH
Confidence 799999999987653
Done!