Query psy785
Match_columns 112
No_of_seqs 116 out of 1243
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 20:25:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.7E-32 9.3E-37 169.0 12.4 109 2-111 64-172 (216)
2 3q72_A GTP-binding protein RAD 100.0 1.8E-27 6.2E-32 141.0 12.2 110 2-111 51-160 (166)
3 3kkq_A RAS-related protein M-R 100.0 3.3E-27 1.1E-31 142.0 12.9 110 2-111 68-178 (183)
4 3cbq_A GTP-binding protein REM 100.0 4.7E-27 1.6E-31 143.2 13.0 110 2-111 74-184 (195)
5 3t5g_A GTP-binding protein RHE 99.9 1.8E-27 6.1E-32 143.0 10.6 110 2-111 56-165 (181)
6 2hup_A RAS-related protein RAB 99.9 6.1E-27 2.1E-31 143.2 12.7 109 2-111 80-189 (201)
7 1c1y_A RAS-related protein RAP 99.9 6E-27 2.1E-31 138.7 11.9 110 2-111 53-163 (167)
8 1u8z_A RAS-related protein RAL 99.9 8.1E-27 2.8E-31 138.0 12.4 110 2-111 54-163 (168)
9 3q85_A GTP-binding protein REM 99.9 4.9E-27 1.7E-31 139.5 11.5 110 2-111 53-163 (169)
10 2fu5_C RAS-related protein RAB 99.9 5.1E-27 1.7E-31 141.2 11.4 109 2-111 59-167 (183)
11 2nzj_A GTP-binding protein REM 99.9 1.4E-26 4.9E-31 138.0 12.7 110 2-111 54-165 (175)
12 2bov_A RAla, RAS-related prote 99.9 2.5E-26 8.5E-31 140.3 13.7 110 2-111 64-173 (206)
13 1kao_A RAP2A; GTP-binding prot 99.9 9.2E-27 3.2E-31 137.6 11.3 110 2-111 53-162 (167)
14 1z06_A RAS-related protein RAB 99.9 1.9E-26 6.5E-31 139.5 12.9 110 2-111 71-184 (189)
15 3bc1_A RAS-related protein RAB 99.9 2.4E-26 8.2E-31 138.9 13.3 110 2-111 72-181 (195)
16 2ew1_A RAS-related protein RAB 99.9 1.4E-26 4.9E-31 141.8 12.2 109 2-111 77-185 (201)
17 2efe_B Small GTP-binding prote 99.9 3.8E-26 1.3E-30 136.9 13.8 109 2-111 63-171 (181)
18 1r2q_A RAS-related protein RAB 99.9 2.3E-26 7.9E-31 136.4 12.7 109 2-111 57-165 (170)
19 2g6b_A RAS-related protein RAB 99.9 2E-26 6.7E-31 138.1 12.4 109 2-111 62-170 (180)
20 2hxs_A RAB-26, RAS-related pro 99.9 7.2E-27 2.5E-31 139.8 10.5 110 2-111 58-169 (178)
21 2a9k_A RAS-related protein RAL 99.9 2.1E-26 7.3E-31 138.5 12.5 110 2-111 68-177 (187)
22 2fn4_A P23, RAS-related protei 99.9 1.5E-26 5E-31 138.6 11.7 110 2-111 59-168 (181)
23 3oes_A GTPase rhebl1; small GT 99.9 5.5E-27 1.9E-31 143.2 9.8 110 2-111 74-183 (201)
24 1ek0_A Protein (GTP-binding pr 99.9 4.2E-26 1.4E-30 135.3 13.1 109 2-111 54-165 (170)
25 1zbd_A Rabphilin-3A; G protein 99.9 4.9E-26 1.7E-30 139.0 13.6 109 2-111 59-167 (203)
26 1z0f_A RAB14, member RAS oncog 99.9 4.2E-26 1.4E-30 136.3 12.6 109 2-111 66-174 (179)
27 3tw8_B RAS-related protein RAB 99.9 3E-26 1E-30 137.2 11.9 108 2-111 60-167 (181)
28 2a5j_A RAS-related protein RAB 99.9 2.7E-26 9.2E-31 139.1 11.8 109 2-111 72-180 (191)
29 2fg5_A RAB-22B, RAS-related pr 99.9 3.1E-26 1.1E-30 139.0 12.0 109 2-111 74-182 (192)
30 3tkl_A RAS-related protein RAB 99.9 5.2E-26 1.8E-30 137.9 12.8 109 2-111 67-175 (196)
31 2g3y_A GTP-binding protein GEM 99.9 4.2E-26 1.4E-30 140.8 12.5 110 2-111 89-199 (211)
32 2bme_A RAB4A, RAS-related prot 99.9 4E-26 1.4E-30 137.5 12.1 109 2-111 61-169 (186)
33 3dz8_A RAS-related protein RAB 99.9 1.5E-26 5E-31 140.3 10.2 109 2-111 74-182 (191)
34 3ihw_A Centg3; RAS, centaurin, 99.9 3.7E-26 1.3E-30 138.1 11.9 105 2-111 69-176 (184)
35 3q3j_B RHO-related GTP-binding 99.9 1.5E-26 5.2E-31 142.8 10.4 108 2-111 77-199 (214)
36 2gf9_A RAS-related protein RAB 99.9 4.1E-26 1.4E-30 138.1 12.0 109 2-111 73-181 (189)
37 1z08_A RAS-related protein RAB 99.9 2.3E-26 7.8E-31 136.6 10.7 109 2-111 57-165 (170)
38 4dsu_A GTPase KRAS, isoform 2B 99.9 8.2E-26 2.8E-30 136.2 13.0 109 2-111 54-162 (189)
39 2f7s_A C25KG, RAS-related prot 99.9 1.8E-26 6.1E-31 142.3 10.2 110 2-111 86-195 (217)
40 2yc2_C IFT27, small RAB-relate 99.9 3.5E-26 1.2E-30 139.7 11.4 110 2-111 75-188 (208)
41 3c5c_A RAS-like protein 12; GD 99.9 1.6E-26 5.5E-31 139.9 9.7 109 2-111 71-182 (187)
42 2bcg_Y Protein YP2, GTP-bindin 99.9 6.4E-26 2.2E-30 138.8 12.4 109 2-111 59-167 (206)
43 2atv_A RERG, RAS-like estrogen 99.9 4.1E-26 1.4E-30 138.8 11.3 109 2-111 78-187 (196)
44 1z0j_A RAB-22, RAS-related pro 99.9 1.2E-25 4E-30 133.4 13.0 109 2-111 57-165 (170)
45 3reg_A RHO-like small GTPase; 99.9 5.9E-26 2E-30 137.8 11.9 108 2-111 73-184 (194)
46 2atx_A Small GTP binding prote 99.9 9E-26 3.1E-30 137.0 12.6 108 2-111 68-189 (194)
47 1z2a_A RAS-related protein RAB 99.9 4.1E-26 1.4E-30 135.2 10.7 108 2-111 56-163 (168)
48 2erx_A GTP-binding protein DI- 99.9 6.6E-26 2.3E-30 134.6 11.4 110 2-111 53-163 (172)
49 1f6b_A SAR1; gtpases, N-termin 99.9 5.6E-26 1.9E-30 138.7 10.9 108 2-111 71-195 (198)
50 2o52_A RAS-related protein RAB 99.9 4.1E-26 1.4E-30 139.4 10.3 109 2-111 76-184 (200)
51 1x3s_A RAS-related protein RAB 99.9 9.2E-26 3.2E-30 136.7 11.8 109 2-111 66-174 (195)
52 3t1o_A Gliding protein MGLA; G 99.9 3.3E-26 1.1E-30 138.7 9.8 106 2-111 76-188 (198)
53 2y8e_A RAB-protein 6, GH09086P 99.9 1.1E-25 3.7E-30 134.6 11.9 109 2-111 65-173 (179)
54 3cpj_B GTP-binding protein YPT 99.9 4.6E-26 1.6E-30 141.2 10.4 109 2-111 64-172 (223)
55 3bwd_D RAC-like GTP-binding pr 99.9 4.1E-26 1.4E-30 136.9 9.6 108 2-111 58-177 (182)
56 2il1_A RAB12; G-protein, GDP, 99.9 1.1E-25 3.6E-30 136.7 11.3 109 2-111 77-186 (192)
57 2p5s_A RAS and EF-hand domain 99.9 1.2E-25 4E-30 137.1 11.5 109 2-111 79-193 (199)
58 2ce2_X GTPase HRAS; signaling 99.9 4.7E-25 1.6E-29 130.1 13.5 109 2-111 53-161 (166)
59 1g16_A RAS-related protein SEC 99.9 1.4E-25 4.8E-30 133.1 11.1 108 2-111 54-161 (170)
60 2oil_A CATX-8, RAS-related pro 99.9 1.7E-25 5.7E-30 135.7 11.4 109 2-111 76-184 (193)
61 1wms_A RAB-9, RAB9, RAS-relate 99.9 5.4E-25 1.9E-29 131.5 13.4 109 2-111 58-170 (177)
62 1m2o_B GTP-binding protein SAR 99.9 1.6E-25 5.4E-30 135.9 11.2 109 2-112 69-189 (190)
63 2iwr_A Centaurin gamma 1; ANK 99.9 3.4E-25 1.2E-29 132.6 12.5 105 2-111 56-165 (178)
64 2q3h_A RAS homolog gene family 99.9 1.9E-25 6.5E-30 136.2 11.4 108 2-111 70-191 (201)
65 3clv_A RAB5 protein, putative; 99.9 5E-25 1.7E-29 133.9 13.3 106 2-111 95-200 (208)
66 3con_A GTPase NRAS; structural 99.9 5.2E-25 1.8E-29 133.1 13.2 109 2-111 71-179 (190)
67 1r8s_A ADP-ribosylation factor 99.9 3.5E-26 1.2E-30 135.2 7.7 108 2-111 46-158 (164)
68 1m7b_A RND3/RHOE small GTP-bin 99.9 1.3E-25 4.3E-30 135.5 9.9 108 2-111 57-179 (184)
69 2j0v_A RAC-like GTP-binding pr 99.9 5.6E-26 1.9E-30 139.6 8.5 108 2-111 59-176 (212)
70 1ky3_A GTP-binding protein YPT 99.9 4.6E-25 1.6E-29 132.1 11.7 110 2-111 60-174 (182)
71 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.6E-25 8.8E-30 133.7 10.5 108 2-111 55-176 (186)
72 2j1l_A RHO-related GTP-binding 99.9 1.8E-25 6.2E-30 137.8 9.9 108 2-111 84-205 (214)
73 2cjw_A GTP-binding protein GEM 99.9 7.1E-25 2.4E-29 133.3 12.2 110 2-111 58-168 (192)
74 2gco_A H9, RHO-related GTP-bin 99.9 7E-25 2.4E-29 133.9 12.2 108 2-111 75-196 (201)
75 4gzl_A RAS-related C3 botulinu 99.9 2.5E-25 8.5E-30 136.3 9.9 108 2-111 80-201 (204)
76 4djt_A GTP-binding nuclear pro 99.9 2.5E-25 8.6E-30 137.2 9.8 109 2-111 63-171 (218)
77 1gwn_A RHO-related GTP-binding 99.9 2.9E-25 1E-29 136.3 9.9 108 2-111 78-200 (205)
78 2gf0_A GTP-binding protein DI- 99.9 8.1E-25 2.8E-29 132.9 11.7 109 2-111 58-167 (199)
79 3cph_A RAS-related protein SEC 99.9 9.1E-25 3.1E-29 134.0 11.8 108 2-111 71-178 (213)
80 4bas_A ADP-ribosylation factor 99.9 1.8E-25 6E-30 135.9 8.3 108 2-111 65-185 (199)
81 2fv8_A H6, RHO-related GTP-bin 99.9 1.4E-24 4.7E-29 133.2 11.7 108 2-111 75-196 (207)
82 1fzq_A ADP-ribosylation factor 99.9 9E-25 3.1E-29 131.6 10.6 108 2-111 62-174 (181)
83 1upt_A ARL1, ADP-ribosylation 99.9 1.9E-25 6.5E-30 132.7 7.4 108 2-111 53-165 (171)
84 1vg8_A RAS-related protein RAB 99.9 1E-24 3.5E-29 133.3 10.7 109 2-111 59-171 (207)
85 2b6h_A ADP-ribosylation factor 99.9 1.3E-25 4.6E-30 136.4 6.3 108 2-111 75-187 (192)
86 3l0i_B RAS-related protein RAB 99.9 1.9E-26 6.5E-31 140.7 2.3 109 2-111 84-192 (199)
87 2h17_A ADP-ribosylation factor 99.9 1.2E-24 4E-29 130.9 10.0 109 2-112 67-180 (181)
88 2h57_A ADP-ribosylation factor 99.9 3.3E-24 1.1E-28 129.8 11.9 108 2-111 69-183 (190)
89 1zj6_A ADP-ribosylation factor 99.9 1.5E-24 5.1E-29 131.0 10.2 108 2-111 62-174 (187)
90 3llu_A RAS-related GTP-binding 99.9 1.1E-24 3.8E-29 132.6 9.0 108 1-111 70-193 (196)
91 3gj0_A GTP-binding nuclear pro 99.9 9.2E-25 3.1E-29 135.1 8.5 106 2-111 66-171 (221)
92 1ksh_A ARF-like protein 2; sma 99.9 2.6E-24 8.8E-29 129.7 10.0 108 2-111 64-176 (186)
93 1zd9_A ADP-ribosylation factor 99.9 5.4E-25 1.9E-29 133.1 6.6 108 2-111 69-181 (188)
94 3r7w_B Gtpase2, GTP-binding pr 99.9 3.7E-25 1.3E-29 143.5 6.1 108 1-111 47-170 (331)
95 2x77_A ADP-ribosylation factor 99.9 2.2E-25 7.5E-30 134.8 4.5 108 2-111 68-180 (189)
96 1cip_A Protein (guanine nucleo 99.9 1.3E-24 4.4E-29 142.7 5.3 110 2-111 195-340 (353)
97 2wkq_A NPH1-1, RAS-related C3 99.9 1.7E-23 5.6E-28 135.8 10.3 108 2-111 205-326 (332)
98 3th5_A RAS-related C3 botulinu 99.8 1.5E-25 5.2E-30 137.0 0.0 108 2-111 80-201 (204)
99 1moz_A ARL1, ADP-ribosylation 99.9 1.2E-23 4.2E-28 126.3 8.3 108 2-111 64-176 (183)
100 2xtz_A Guanine nucleotide-bind 99.9 6.6E-24 2.2E-28 139.4 4.8 110 2-111 185-341 (354)
101 2zej_A Dardarin, leucine-rich 99.9 9.1E-24 3.1E-28 127.4 4.8 107 2-110 58-173 (184)
102 3c5h_A Glucocorticoid receptor 99.9 1.7E-23 5.9E-28 132.3 6.1 103 7-111 125-251 (255)
103 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-23 7.1E-28 142.2 6.3 108 2-111 368-480 (497)
104 1azs_C GS-alpha; complex (lyas 99.9 2.5E-23 8.4E-28 138.3 6.0 109 2-110 219-380 (402)
105 3o47_A ADP-ribosylation factor 99.9 1.6E-23 5.3E-28 136.7 4.9 108 2-111 211-323 (329)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 9.2E-23 3.2E-27 131.9 7.6 109 2-111 54-177 (307)
107 1u0l_A Probable GTPase ENGC; p 99.9 1.7E-22 5.8E-27 130.4 8.4 103 1-111 64-169 (301)
108 1zcb_A G alpha I/13; GTP-bindi 99.9 2.8E-23 9.5E-28 136.8 4.6 110 2-111 203-349 (362)
109 3ohm_A Guanine nucleotide-bind 99.9 2.4E-23 8.1E-28 135.3 3.8 111 1-111 168-314 (327)
110 2fh5_B SR-beta, signal recogni 99.9 2E-21 6.9E-26 119.4 11.4 110 2-111 56-212 (214)
111 2wji_A Ferrous iron transport 99.9 4.2E-22 1.4E-26 118.3 7.8 102 2-111 52-161 (165)
112 2f9l_A RAB11B, member RAS onco 99.9 1.1E-20 3.8E-25 115.1 11.9 109 2-111 56-164 (199)
113 4fid_A G protein alpha subunit 99.9 4.1E-22 1.4E-26 130.0 5.2 110 2-111 163-324 (340)
114 2qu8_A Putative nucleolar GTP- 99.8 1.3E-20 4.4E-25 117.1 10.4 108 2-111 78-201 (228)
115 2cxx_A Probable GTP-binding pr 99.8 2.9E-21 1E-25 116.4 6.4 108 1-111 45-180 (190)
116 3dpu_A RAB family protein; roc 99.8 5.8E-21 2E-25 131.2 7.1 105 2-111 100-204 (535)
117 3iev_A GTP-binding protein ERA 99.8 3.3E-20 1.1E-24 120.0 10.1 106 2-111 61-178 (308)
118 1oix_A RAS-related protein RAB 99.8 1E-19 3.5E-24 110.3 10.5 109 2-111 80-188 (191)
119 2wjg_A FEOB, ferrous iron tran 99.8 1.9E-20 6.4E-25 112.8 6.6 102 2-111 56-165 (188)
120 1svi_A GTP-binding protein YSX 99.8 4.5E-20 1.6E-24 111.7 8.0 105 1-111 70-191 (195)
121 3b1v_A Ferrous iron uptake tra 99.8 2.8E-20 9.6E-25 118.6 7.4 103 1-111 50-160 (272)
122 2lkc_A Translation initiation 99.8 4.7E-20 1.6E-24 110.1 7.1 99 2-111 57-167 (178)
123 2dyk_A GTP-binding protein; GT 99.8 2.5E-20 8.4E-25 109.6 5.3 100 2-111 51-158 (161)
124 1nrj_B SR-beta, signal recogni 99.8 2.6E-20 8.8E-25 114.7 5.0 101 1-101 56-170 (218)
125 3a1s_A Iron(II) transport prot 99.8 1.2E-19 4.2E-24 114.8 7.1 102 2-111 54-163 (258)
126 3iby_A Ferrous iron transport 99.8 3.7E-20 1.3E-24 117.1 4.3 102 2-111 50-163 (256)
127 4dcu_A GTP-binding protein ENG 99.8 3.4E-19 1.2E-23 120.5 8.9 105 2-111 245-365 (456)
128 2gj8_A MNME, tRNA modification 99.8 1.3E-20 4.4E-25 112.6 1.7 101 2-111 54-162 (172)
129 3pqc_A Probable GTP-binding pr 99.8 6.4E-19 2.2E-23 106.4 8.5 103 2-111 70-190 (195)
130 3i8s_A Ferrous iron transport 99.8 2.5E-19 8.4E-24 114.3 5.0 102 2-111 52-165 (274)
131 3sjy_A Translation initiation 99.8 2.8E-18 9.7E-23 114.5 10.3 107 2-111 77-188 (403)
132 2hjg_A GTP-binding protein ENG 99.8 7.3E-19 2.5E-23 118.3 7.5 104 2-110 225-344 (436)
133 4dhe_A Probable GTP-binding pr 99.8 1.7E-18 5.9E-23 106.8 8.3 106 1-111 80-207 (223)
134 3cb4_D GTP-binding protein LEP 99.8 6.8E-18 2.3E-22 117.1 11.3 103 2-111 73-178 (599)
135 2yv5_A YJEQ protein; hydrolase 99.8 1.9E-18 6.4E-23 111.6 7.7 98 10-111 66-165 (302)
136 3qq5_A Small GTP-binding prote 99.8 5.7E-19 1.9E-23 118.3 5.0 101 2-111 85-192 (423)
137 2ywe_A GTP-binding protein LEP 99.8 1.2E-17 4E-22 115.9 11.3 103 2-111 75-180 (600)
138 3gee_A MNME, tRNA modification 99.7 4.4E-18 1.5E-22 115.5 8.6 104 2-111 283-394 (476)
139 2e87_A Hypothetical protein PH 99.7 1.6E-17 5.4E-22 109.4 10.8 106 2-111 216-332 (357)
140 1lnz_A SPO0B-associated GTP-bi 99.7 2.4E-18 8.1E-23 112.7 6.3 106 2-111 208-326 (342)
141 3k53_A Ferrous iron transport 99.7 2.7E-18 9.1E-23 109.3 6.3 103 2-111 52-162 (271)
142 1wf3_A GTP-binding protein; GT 99.7 1.3E-17 4.5E-22 107.6 8.5 102 2-111 57-169 (301)
143 1s0u_A EIF-2-gamma, translatio 99.7 4E-17 1.4E-21 109.1 9.5 103 2-111 83-194 (408)
144 1xzp_A Probable tRNA modificat 99.7 9.2E-17 3.2E-21 109.2 10.4 100 2-111 293-401 (482)
145 3tr5_A RF-3, peptide chain rel 99.7 2E-16 7E-21 108.6 11.6 65 2-71 84-148 (528)
146 1jny_A EF-1-alpha, elongation 99.7 1.9E-17 6.5E-22 111.5 6.3 105 2-107 86-205 (435)
147 3p26_A Elongation factor 1 alp 99.7 2.9E-17 1E-21 111.8 6.4 102 2-105 113-228 (483)
148 1zun_B Sulfate adenylate trans 99.7 1.5E-16 5.1E-21 107.1 9.5 102 2-108 106-217 (434)
149 1kk1_A EIF2gamma; initiation o 99.7 1E-16 3.5E-21 107.2 8.5 103 2-111 85-196 (410)
150 1wb1_A Translation elongation 99.7 1.5E-16 5.1E-21 108.3 9.2 102 2-111 75-185 (482)
151 1g7s_A Translation initiation 99.7 2.6E-16 8.9E-21 109.3 10.5 101 2-110 72-213 (594)
152 2elf_A Protein translation elo 99.7 8.4E-17 2.9E-21 106.4 7.7 103 2-111 62-176 (370)
153 1mky_A Probable GTP-binding pr 99.7 1.8E-16 6.2E-21 106.8 8.2 99 2-111 51-162 (439)
154 2c78_A Elongation factor TU-A; 99.7 1.5E-16 5.2E-21 106.2 7.2 95 2-101 77-180 (405)
155 3l82_B F-box only protein 4; T 99.7 2.3E-16 7.8E-21 96.5 7.2 103 7-112 109-220 (227)
156 1d2e_A Elongation factor TU (E 99.7 2.5E-16 8.5E-21 105.0 8.0 104 2-110 68-190 (397)
157 3j2k_7 ERF3, eukaryotic polype 99.7 5.1E-16 1.7E-20 104.7 9.2 103 1-107 96-217 (439)
158 2hjg_A GTP-binding protein ENG 99.7 9.5E-17 3.2E-21 108.1 5.5 101 1-111 52-161 (436)
159 3izy_P Translation initiation 99.6 2.1E-17 7E-22 113.5 1.3 105 1-110 53-163 (537)
160 3geh_A MNME, tRNA modification 99.6 2.1E-16 7.1E-21 107.0 5.7 99 2-111 274-380 (462)
161 1f60_A Elongation factor EEF1A 99.6 5E-16 1.7E-20 105.2 7.4 101 2-106 87-203 (458)
162 1r5b_A Eukaryotic peptide chai 99.6 1.1E-16 3.9E-21 108.5 4.1 104 2-106 123-243 (467)
163 1ega_A Protein (GTP-binding pr 99.6 4.8E-16 1.6E-20 100.3 6.8 104 2-111 58-171 (301)
164 3izq_1 HBS1P, elongation facto 99.6 3.6E-16 1.2E-20 109.0 6.4 101 2-105 247-362 (611)
165 1zo1_I IF2, translation initia 99.6 5.4E-17 1.8E-21 110.6 2.0 103 1-111 52-163 (501)
166 2ged_A SR-beta, signal recogni 99.6 2E-15 6.9E-20 91.1 7.8 74 1-74 92-173 (193)
167 2aka_B Dynamin-1; fusion prote 99.6 3.9E-16 1.3E-20 100.1 4.2 106 1-110 126-248 (299)
168 3avx_A Elongation factor TS, e 99.6 2.2E-15 7.4E-20 110.3 7.7 105 2-111 361-482 (1289)
169 1mky_A Probable GTP-binding pr 99.6 9E-15 3.1E-19 98.6 10.1 104 2-110 230-350 (439)
170 3l2o_B F-box only protein 4; s 99.6 4.9E-15 1.7E-19 94.5 6.9 102 7-111 194-304 (312)
171 2qtf_A Protein HFLX, GTP-bindi 99.6 4.8E-14 1.6E-18 93.1 11.3 108 2-111 228-350 (364)
172 2dy1_A Elongation factor G; tr 99.6 4.5E-14 1.5E-18 99.3 10.8 64 2-70 76-139 (665)
173 4dcu_A GTP-binding protein ENG 99.5 6.7E-15 2.3E-19 99.6 6.2 101 1-111 72-181 (456)
174 2xtp_A GTPase IMAP family memb 99.5 1.9E-14 6.4E-19 90.8 6.2 107 2-111 73-204 (260)
175 2h5e_A Peptide chain release f 99.5 1.1E-13 3.8E-18 95.1 8.8 101 2-109 84-189 (529)
176 2qag_A Septin-2, protein NEDD5 99.5 1.7E-15 5.7E-20 99.9 -0.4 102 2-110 97-228 (361)
177 3lxx_A GTPase IMAP family memb 99.5 6.2E-14 2.1E-18 87.5 6.7 107 2-110 80-209 (239)
178 1dar_A EF-G, elongation factor 99.5 2.7E-13 9.4E-18 95.7 10.5 65 2-71 79-143 (691)
179 3t5d_A Septin-7; GTP-binding p 99.5 5E-14 1.7E-18 89.7 5.7 105 2-111 67-200 (274)
180 3mca_A HBS1, elongation factor 99.5 4.7E-16 1.6E-20 108.1 -4.0 95 1-103 256-371 (592)
181 2j69_A Bacterial dynamin-like 99.5 1.2E-13 4.2E-18 97.5 7.6 105 2-110 176-320 (695)
182 3t34_A Dynamin-related protein 99.5 1.8E-14 6.3E-19 94.8 3.2 103 2-107 138-253 (360)
183 2rdo_7 EF-G, elongation factor 99.4 1.2E-12 4E-17 92.7 11.3 66 1-71 83-148 (704)
184 1udx_A The GTP-binding protein 99.4 4.6E-13 1.6E-17 89.7 8.8 107 2-111 207-321 (416)
185 3h2y_A GTPase family protein; 99.4 5.3E-13 1.8E-17 88.3 8.1 93 10-110 56-155 (368)
186 2xex_A Elongation factor G; GT 99.4 2.7E-12 9.2E-17 90.7 10.9 65 2-71 77-141 (693)
187 1jwy_B Dynamin A GTPase domain 99.4 5.7E-13 2E-17 86.0 5.9 104 2-109 133-256 (315)
188 1yrb_A ATP(GTP)binding protein 99.4 1.4E-12 4.9E-17 82.1 6.9 104 2-111 111-253 (262)
189 3lxw_A GTPase IMAP family memb 99.4 1.5E-12 5.1E-17 81.8 6.6 108 2-110 72-203 (247)
190 1wxq_A GTP-binding protein; st 99.3 5.9E-13 2E-17 88.8 4.1 49 57-107 214-262 (397)
191 3ec1_A YQEH GTPase; atnos1, at 99.3 2.7E-12 9.1E-17 84.9 6.5 94 9-110 57-157 (369)
192 3p32_A Probable GTPase RV1496/ 99.3 1.4E-12 4.9E-17 85.8 5.0 97 2-111 174-280 (355)
193 1pui_A ENGB, probable GTP-bind 99.3 2E-11 7E-16 74.3 9.2 103 2-111 74-195 (210)
194 3vqt_A RF-3, peptide chain rel 99.3 4.2E-11 1.4E-15 82.8 10.8 65 1-70 101-165 (548)
195 2x2e_A Dynamin-1; nitration, h 99.3 3.7E-13 1.3E-17 88.5 -0.3 105 2-110 132-253 (353)
196 2qnr_A Septin-2, protein NEDD5 99.3 1.9E-12 6.5E-17 83.5 2.4 103 2-110 78-209 (301)
197 2wsm_A Hydrogenase expression/ 99.2 1.1E-11 3.7E-16 76.2 5.2 98 2-111 111-210 (221)
198 3def_A T7I23.11 protein; chlor 99.2 3.3E-11 1.1E-15 76.2 6.9 71 2-72 86-166 (262)
199 2qag_C Septin-7; cell cycle, c 99.2 1.4E-11 4.8E-16 82.6 3.8 104 2-111 90-223 (418)
200 1puj_A YLQF, conserved hypothe 99.2 8.8E-11 3E-15 75.2 7.3 96 4-110 3-101 (282)
201 1n0u_A EF-2, elongation factor 99.2 3.6E-11 1.2E-15 86.6 5.6 64 2-70 100-163 (842)
202 3j25_A Tetracycline resistance 99.2 8.4E-11 2.9E-15 82.6 6.9 65 1-70 68-132 (638)
203 2p67_A LAO/AO transport system 99.1 5.4E-11 1.9E-15 77.9 5.0 98 2-111 151-257 (341)
204 1t9h_A YLOQ, probable GTPase E 99.1 1.9E-10 6.6E-15 74.3 6.2 94 12-109 75-171 (307)
205 1h65_A Chloroplast outer envel 99.1 4E-10 1.4E-14 71.5 6.7 71 2-73 89-170 (270)
206 2qpt_A EH domain-containing pr 99.0 2.2E-10 7.6E-15 79.2 5.0 68 2-73 156-234 (550)
207 1jal_A YCHF protein; nucleotid 99.0 2.1E-09 7.2E-14 70.9 9.1 43 56-98 198-240 (363)
208 2www_A Methylmalonic aciduria 99.0 8.1E-10 2.8E-14 72.6 7.0 97 2-111 169-275 (349)
209 2dby_A GTP-binding protein; GD 99.0 1.5E-09 5.1E-14 71.8 7.8 50 57-106 201-253 (368)
210 4fn5_A EF-G 1, elongation fact 99.0 5.2E-09 1.8E-13 74.4 10.6 64 2-70 87-150 (709)
211 3zvr_A Dynamin-1; hydrolase, D 99.0 1.4E-10 4.8E-15 82.6 2.6 105 2-110 152-273 (772)
212 3cnl_A YLQF, putative uncharac 98.9 1E-09 3.4E-14 69.6 4.4 92 8-111 5-97 (262)
213 2qm8_A GTPase/ATPase; G protei 98.8 1.3E-08 4.5E-13 66.6 7.7 98 2-111 150-257 (337)
214 2rcn_A Probable GTPase ENGC; Y 98.7 7.5E-08 2.6E-12 63.5 8.0 85 20-109 127-213 (358)
215 2hf9_A Probable hydrogenase ni 98.7 1.2E-08 4.2E-13 62.7 3.6 54 58-111 165-220 (226)
216 2j37_W Signal recognition part 98.0 2.5E-05 8.7E-10 53.7 6.8 98 2-111 186-309 (504)
217 4a9a_A Ribosome-interacting GT 97.9 0.00026 9.1E-09 47.0 10.5 86 2-89 121-222 (376)
218 2ohf_A Protein OLA1, GTP-bindi 97.6 3E-05 1E-09 51.8 2.8 35 2-36 88-129 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 97.2 0.0032 1.1E-07 42.1 8.8 42 57-98 224-269 (392)
220 3dm5_A SRP54, signal recogniti 97.0 0.0067 2.3E-07 41.2 8.9 91 2-105 185-281 (443)
221 4dzz_A Plasmid partitioning pr 96.9 0.0079 2.7E-07 35.9 7.5 84 2-92 78-162 (206)
222 2v3c_C SRP54, signal recogniti 96.8 0.015 5.2E-07 39.3 9.4 96 2-109 183-305 (432)
223 1j8m_F SRP54, signal recogniti 96.6 0.045 1.5E-06 35.2 10.0 89 2-104 183-280 (297)
224 3kl4_A SRP54, signal recogniti 96.5 0.029 1E-06 38.0 8.9 89 2-103 182-278 (433)
225 3ec1_A YQEH GTPase; atnos1, at 96.2 0.00022 7.6E-09 47.2 -2.5 97 2-104 214-320 (369)
226 3end_A Light-independent proto 96.1 0.13 4.5E-06 32.8 10.7 83 2-93 159-242 (307)
227 3cwq_A Para family chromosome 96.1 0.091 3.1E-06 31.7 8.8 83 2-92 70-153 (209)
228 3h2y_A GTPase family protein; 95.7 0.00028 9.7E-09 46.7 -3.7 95 2-102 213-317 (368)
229 1wcv_1 SOJ, segregation protei 94.9 0.25 8.5E-06 30.6 8.0 66 2-70 114-182 (257)
230 2ph1_A Nucleotide-binding prot 94.4 0.26 8.9E-06 30.7 7.2 87 2-93 131-224 (262)
231 3k9g_A PF-32 protein; ssgcid, 94.2 0.32 1.1E-05 30.3 7.3 62 2-68 147-208 (267)
232 1hyq_A MIND, cell division inh 94.0 0.6 2.1E-05 28.8 9.5 81 2-92 113-193 (263)
233 1g3q_A MIND ATPase, cell divis 93.8 0.62 2.1E-05 28.2 9.1 63 2-70 114-176 (237)
234 3q9l_A Septum site-determining 93.8 0.14 4.7E-06 31.6 5.0 65 2-69 116-185 (260)
235 3ea0_A ATPase, para family; al 93.8 0.64 2.2E-05 28.3 10.2 84 2-94 121-204 (245)
236 1cp2_A CP2, nitrogenase iron p 92.5 1.1 3.9E-05 27.7 9.7 86 2-92 118-205 (269)
237 3kjh_A CO dehydrogenase/acetyl 92.2 0.76 2.6E-05 27.9 6.7 61 2-68 134-194 (254)
238 2xj4_A MIPZ; replication, cell 91.7 0.55 1.9E-05 29.7 5.7 32 2-35 106-137 (286)
239 1tq4_A IIGP1, interferon-induc 90.8 2.6 9.1E-05 28.4 9.9 100 2-110 122-248 (413)
240 3ez9_A Para; DNA binding, wing 90.2 2.9 9.7E-05 27.8 8.3 65 2-68 250-321 (403)
241 2afh_E Nitrogenase iron protei 90.0 2.4 8.2E-05 26.6 9.7 86 2-92 121-208 (289)
242 3e70_C DPA, signal recognition 89.7 2.3 8E-05 27.7 7.4 89 3-104 215-309 (328)
243 3bfv_A CAPA1, CAPB2, membrane 88.9 1.5 5.3E-05 27.5 6.0 63 2-70 194-257 (271)
244 2oze_A ORF delta'; para, walke 88.9 2.8 9.6E-05 26.3 7.2 82 2-88 157-241 (298)
245 3szr_A Interferon-induced GTP- 87.2 0.97 3.3E-05 31.9 4.6 66 2-71 149-228 (608)
246 2ffh_A Protein (FFH); SRP54, s 86.5 5.8 0.0002 26.9 9.0 84 2-96 183-272 (425)
247 3sop_A Neuronal-specific septi 86.4 1.1 3.8E-05 28.2 4.2 43 23-72 111-155 (270)
248 2qag_B Septin-6, protein NEDD5 85.8 0.54 1.8E-05 31.9 2.6 42 56-97 175-218 (427)
249 1bif_A 6-phosphofructo-2-kinas 82.4 1.8 6.1E-05 29.5 4.1 49 2-51 89-147 (469)
250 3hyn_A Putative signal transdu 81.3 3.7 0.00013 24.6 4.7 51 13-67 69-119 (189)
251 3cio_A ETK, tyrosine-protein k 80.7 6.4 0.00022 25.1 6.0 63 2-70 216-279 (299)
252 3u7r_A NADPH-dependent FMN red 79.8 2.7 9.1E-05 25.1 3.8 72 17-89 61-135 (190)
253 4a9a_A Ribosome-interacting GT 77.2 3.6 0.00012 27.4 4.2 48 56-110 248-295 (376)
254 2xxa_A Signal recognition part 76.9 15 0.0005 24.9 10.0 83 2-96 186-275 (433)
255 3la6_A Tyrosine-protein kinase 75.8 13 0.00043 23.6 7.8 65 2-71 204-268 (286)
256 2px0_A Flagellar biosynthesis 75.3 12 0.00042 23.8 6.2 83 2-95 185-273 (296)
257 3do6_A Formate--tetrahydrofola 74.9 15 0.00053 25.7 6.7 51 56-108 359-411 (543)
258 2yhs_A FTSY, cell division pro 74.1 20 0.00067 25.0 7.7 89 2-104 378-479 (503)
259 1byi_A Dethiobiotin synthase; 73.4 12 0.00041 22.2 8.3 85 2-93 111-201 (224)
260 1vma_A Cell division protein F 71.2 18 0.0006 23.3 8.3 85 2-98 189-286 (306)
261 3ez2_A Plasmid partition prote 69.0 22 0.00075 23.4 7.3 32 2-35 247-278 (398)
262 4hs4_A Chromate reductase; tri 68.3 10 0.00035 22.6 4.4 74 18-92 68-143 (199)
263 1rj9_A FTSY, signal recognitio 64.8 25 0.00084 22.5 8.3 83 3-96 188-282 (304)
264 2h5e_A Peptide chain release f 64.3 3.3 0.00011 28.8 1.8 23 89-111 252-274 (529)
265 1s2d_A Purine trans deoxyribos 62.5 18 0.0006 21.1 4.5 39 20-64 78-116 (167)
266 3pg5_A Uncharacterized protein 62.3 28 0.00097 22.7 5.9 39 2-43 156-194 (361)
267 3svl_A Protein YIEF; E. coli C 61.9 19 0.00067 21.2 4.7 74 18-92 67-142 (193)
268 2ark_A Flavodoxin; FMN, struct 61.3 22 0.00074 20.7 5.7 72 20-91 49-122 (188)
269 1ydg_A Trp repressor binding p 60.5 20 0.00067 21.2 4.6 74 20-93 75-151 (211)
270 3fvw_A Putative NAD(P)H-depend 60.3 13 0.00044 21.9 3.8 73 17-91 61-142 (192)
271 3k1y_A Oxidoreductase; structu 60.2 14 0.00047 22.0 3.8 71 18-90 80-150 (191)
272 2a5l_A Trp repressor binding p 59.7 23 0.00079 20.5 5.5 74 19-92 67-143 (200)
273 2zki_A 199AA long hypothetical 59.1 24 0.00082 20.5 5.6 74 20-93 67-143 (199)
274 1rtt_A Conserved hypothetical 59.0 9.4 0.00032 22.3 3.0 72 20-92 69-142 (193)
275 1ko7_A HPR kinase/phosphatase; 57.8 5.6 0.00019 25.8 1.9 48 56-110 79-126 (314)
276 3lcm_A SMU.1420, putative oxid 57.0 17 0.00059 21.4 3.9 48 20-67 70-129 (196)
277 3fkq_A NTRC-like two-domain pr 56.9 38 0.0013 22.1 5.9 47 2-51 262-308 (373)
278 1eiw_A Hypothetical protein MT 54.6 24 0.00082 19.1 3.9 41 19-65 34-75 (111)
279 3pzx_A Formate--tetrahydrofola 53.5 9.6 0.00033 26.8 2.6 51 56-108 373-423 (557)
280 2vzf_A NADH-dependent FMN redu 53.0 27 0.00094 20.4 4.4 70 20-92 66-136 (197)
281 1f8y_A Nucleoside 2-deoxyribos 51.9 18 0.00062 20.8 3.3 41 20-66 75-115 (157)
282 3ha2_A NADPH-quinone reductase 51.7 29 0.00099 20.3 4.2 63 3-66 32-101 (177)
283 1ls1_A Signal recognition part 51.5 44 0.0015 21.2 9.1 85 2-97 183-273 (295)
284 2q62_A ARSH; alpha/beta, flavo 51.1 15 0.00052 22.8 3.1 72 18-91 93-168 (247)
285 3gfs_A FMN-dependent NADPH-azo 50.2 34 0.0012 19.5 4.6 73 19-93 59-131 (174)
286 1d4a_A DT-diaphorase, quinone 48.9 27 0.00094 21.8 4.0 48 21-68 91-150 (273)
287 3b6i_A Flavoprotein WRBA; flav 46.8 35 0.0012 19.7 4.1 74 19-93 64-140 (198)
288 1sqs_A Conserved hypothetical 46.8 29 0.00098 21.1 3.8 71 20-92 76-149 (242)
289 3f2v_A General stress protein 46.4 28 0.00094 20.7 3.6 49 19-67 54-110 (192)
290 1zu4_A FTSY; GTPase, signal re 44.5 61 0.0021 20.9 10.1 84 2-96 194-289 (320)
291 3ehd_A Uncharacterized conserv 44.1 41 0.0014 19.6 4.0 42 20-67 66-107 (162)
292 3eb2_A Putative dihydrodipicol 43.4 53 0.0018 21.0 4.8 38 22-62 98-135 (300)
293 1t0i_A YLR011WP; FMN binding p 42.8 32 0.0011 19.9 3.5 71 18-93 79-149 (191)
294 3r6w_A FMN-dependent NADH-azor 42.7 35 0.0012 20.2 3.7 80 20-99 84-186 (212)
295 1rli_A Trp repressor binding p 42.0 25 0.00087 20.0 3.0 74 19-92 67-151 (184)
296 1uf3_A Hypothetical protein TT 41.9 51 0.0017 19.2 5.7 40 23-66 32-73 (228)
297 3tem_A Ribosyldihydronicotinam 40.8 42 0.0014 20.4 3.9 49 20-68 89-149 (228)
298 3fwy_A Light-independent proto 40.5 71 0.0024 20.5 10.9 81 3-92 167-248 (314)
299 2yxg_A DHDPS, dihydrodipicolin 39.7 53 0.0018 20.8 4.4 38 22-62 94-131 (289)
300 3qk7_A Transcriptional regulat 39.7 65 0.0022 19.8 5.1 36 22-68 64-99 (294)
301 2ehh_A DHDPS, dihydrodipicolin 39.5 55 0.0019 20.8 4.4 38 22-62 94-131 (294)
302 2vc6_A MOSA, dihydrodipicolina 39.0 56 0.0019 20.7 4.4 38 22-62 94-131 (292)
303 1xky_A Dihydrodipicolinate syn 39.0 55 0.0019 20.9 4.4 38 22-62 106-143 (301)
304 3tak_A DHDPS, dihydrodipicolin 38.6 58 0.002 20.6 4.4 38 22-62 95-132 (291)
305 1w3i_A EDA, 2-keto-3-deoxy glu 38.5 60 0.002 20.6 4.4 38 22-62 90-128 (293)
306 2yvt_A Hypothetical protein AQ 38.4 64 0.0022 19.4 6.9 36 3-38 10-47 (260)
307 3cpr_A Dihydrodipicolinate syn 38.2 59 0.002 20.8 4.4 38 22-62 110-147 (304)
308 3m5v_A DHDPS, dihydrodipicolin 38.2 58 0.002 20.8 4.4 60 22-86 102-161 (301)
309 5nul_A Flavodoxin; electron tr 38.1 45 0.0015 18.0 3.5 68 20-92 42-111 (138)
310 1o5k_A DHDPS, dihydrodipicolin 38.1 56 0.0019 20.9 4.3 38 22-62 106-143 (306)
311 3d7n_A Flavodoxin, WRBA-like p 38.0 43 0.0015 19.5 3.6 73 19-91 50-125 (193)
312 2ojp_A DHDPS, dihydrodipicolin 37.8 57 0.002 20.7 4.3 38 22-62 95-132 (292)
313 3si9_A DHDPS, dihydrodipicolin 37.8 59 0.002 21.0 4.4 38 22-62 116-153 (315)
314 3qze_A DHDPS, dihydrodipicolin 37.5 60 0.002 20.9 4.4 38 22-62 117-154 (314)
315 3flu_A DHDPS, dihydrodipicolin 36.9 64 0.0022 20.5 4.4 38 22-62 101-138 (297)
316 2v9d_A YAGE; dihydrodipicolini 36.7 62 0.0021 21.2 4.4 38 22-62 125-162 (343)
317 2amj_A Modulator of drug activ 36.5 67 0.0023 19.0 4.7 47 3-50 51-97 (204)
318 3l21_A DHDPS, dihydrodipicolin 36.0 61 0.0021 20.8 4.2 38 22-62 109-146 (304)
319 2f62_A Nucleoside 2-deoxyribos 35.1 58 0.002 18.8 3.7 43 18-66 62-107 (161)
320 3cf4_G Acetyl-COA decarboxylas 34.8 66 0.0023 18.5 5.3 35 56-94 34-68 (170)
321 2fzv_A Putative arsenical resi 34.4 34 0.0012 21.8 2.8 74 17-92 117-194 (279)
322 3gv0_A Transcriptional regulat 34.3 80 0.0027 19.3 5.5 36 22-68 65-100 (288)
323 3d0c_A Dihydrodipicolinate syn 34.2 54 0.0019 21.1 3.8 54 22-84 105-158 (314)
324 2r8w_A AGR_C_1641P; APC7498, d 34.2 54 0.0018 21.3 3.8 38 22-62 128-165 (332)
325 2rfg_A Dihydrodipicolinate syn 34.1 57 0.002 20.8 3.8 38 22-62 94-131 (297)
326 2nuw_A 2-keto-3-deoxygluconate 33.9 58 0.002 20.6 3.8 38 22-62 90-128 (288)
327 2him_A L-asparaginase 1; hydro 33.8 1E+02 0.0035 20.4 5.2 45 20-70 98-142 (358)
328 3daq_A DHDPS, dihydrodipicolin 33.7 54 0.0018 20.8 3.7 37 23-62 97-133 (292)
329 3na8_A Putative dihydrodipicol 33.6 56 0.0019 21.0 3.8 38 22-62 118-155 (315)
330 1f6k_A N-acetylneuraminate lya 33.6 56 0.0019 20.7 3.7 38 22-62 98-135 (293)
331 3ezx_A MMCP 1, monomethylamine 33.3 81 0.0028 19.0 6.1 43 22-64 142-184 (215)
332 2r91_A 2-keto-3-deoxy-(6-phosp 33.1 61 0.0021 20.5 3.8 38 22-62 89-127 (286)
333 2fz5_A Flavodoxin; alpha/beta 32.7 59 0.002 17.3 5.6 67 21-92 44-112 (137)
334 2wkj_A N-acetylneuraminate lya 32.0 60 0.0021 20.7 3.7 39 22-62 105-143 (303)
335 1wls_A L-asparaginase; structu 30.7 1.1E+02 0.0037 19.9 4.8 45 20-70 70-114 (328)
336 3p0r_A Azoreductase; structura 30.1 90 0.0031 18.5 4.3 71 20-90 89-176 (211)
337 2nx2_A Hypothetical protein YP 29.7 84 0.0029 18.5 3.8 15 20-34 127-141 (181)
338 1t5b_A Acyl carrier protein ph 29.6 84 0.0029 18.0 6.5 75 19-93 82-170 (201)
339 3e96_A Dihydrodipicolinate syn 29.5 53 0.0018 21.2 3.1 39 23-65 106-144 (316)
340 3s2y_A Chromate reductase; ura 35.3 12 0.0004 22.4 0.0 48 19-66 69-118 (199)
341 1nns_A L-asparaginase II; amid 28.0 1.3E+02 0.0043 19.6 5.1 44 20-70 76-119 (326)
342 2hmc_A AGR_L_411P, dihydrodipi 27.9 84 0.0029 20.6 3.9 56 22-83 117-174 (344)
343 4ici_A Putative flavoprotein; 27.4 92 0.0032 17.8 4.3 45 20-68 84-128 (171)
344 3u7i_A FMN-dependent NADH-azor 26.8 1.1E+02 0.0037 18.5 4.3 76 20-95 91-185 (223)
345 1ytl_A Acetyl-COA decarboxylas 26.3 49 0.0017 19.4 2.4 33 56-94 35-67 (174)
346 3l9w_A Glutathione-regulated p 26.2 1E+02 0.0035 20.6 4.2 49 19-67 288-344 (413)
347 4pga_A Glutaminase-asparaginas 25.5 1.3E+02 0.0045 19.7 4.5 43 21-70 88-130 (337)
348 1k68_A Phytochrome response re 24.5 82 0.0028 16.3 3.1 42 23-68 55-96 (140)
349 3b4u_A Dihydrodipicolinate syn 24.5 76 0.0026 20.2 3.2 41 22-62 97-138 (294)
350 1o7j_A L-asparaginase; atomic 24.3 1.4E+02 0.0047 19.4 4.4 41 23-70 85-125 (327)
351 1agx_A Glutaminase-asparaginas 24.0 1.4E+02 0.0047 19.5 4.3 41 23-70 82-122 (331)
352 2ivy_A Hypothetical protein SS 23.9 89 0.003 16.4 3.6 13 26-38 4-16 (101)
353 2d6f_A Glutamyl-tRNA(Gln) amid 23.7 1.6E+02 0.0054 20.2 4.7 41 23-70 167-207 (435)
354 3gt7_A Sensor protein; structu 23.7 96 0.0033 16.7 4.8 42 23-68 51-92 (154)
355 3h5d_A DHDPS, dihydrodipicolin 23.5 1.4E+02 0.0048 19.2 4.3 37 23-62 102-139 (311)
356 3nxk_A Cytoplasmic L-asparagin 23.1 1.6E+02 0.0056 19.2 5.0 42 22-70 87-128 (334)
357 2pcq_A Putative dihydrodipicol 22.9 67 0.0023 20.3 2.7 36 22-62 87-123 (283)
358 1ivn_A Thioesterase I; hydrola 22.4 1.1E+02 0.0039 17.1 3.6 68 23-94 62-139 (190)
359 3nhm_A Response regulator; pro 22.3 92 0.0032 16.0 4.1 42 23-68 47-88 (133)
360 2qvg_A Two component response 22.3 96 0.0033 16.2 3.5 42 23-68 59-100 (143)
361 3gl9_A Response regulator; bet 22.2 92 0.0031 16.0 4.2 41 23-67 46-86 (122)
362 2wlt_A L-asparaginase; hydrola 22.1 1.4E+02 0.0047 19.5 4.1 41 23-70 85-125 (332)
363 3hcw_A Maltose operon transcri 21.9 1E+02 0.0035 18.9 3.4 36 22-68 67-102 (295)
364 3s5o_A 4-hydroxy-2-oxoglutarat 21.8 1.6E+02 0.0056 18.7 4.7 38 22-62 108-147 (307)
365 1zq1_A Glutamyl-tRNA(Gln) amid 21.8 1.8E+02 0.006 20.0 4.6 42 23-70 168-209 (438)
366 3a5f_A Dihydrodipicolinate syn 21.5 57 0.002 20.7 2.2 38 22-62 95-132 (291)
367 3hp4_A GDSL-esterase; psychrot 21.5 1E+02 0.0035 17.2 3.1 68 23-94 66-143 (185)
368 2l82_A Designed protein OR32; 21.5 1.1E+02 0.0038 16.6 5.0 41 20-68 74-114 (162)
369 3j21_Z 50S ribosomal protein L 21.4 54 0.0018 17.0 1.7 15 56-70 56-71 (99)
370 1q57_A DNA primase/helicase; d 21.3 1.2E+02 0.0039 20.8 3.8 18 81-98 387-404 (503)
371 3i42_A Response regulator rece 21.3 96 0.0033 15.8 4.7 43 23-69 47-89 (127)
372 1ybh_A Acetolactate synthase, 21.0 2.2E+02 0.0075 19.9 5.4 33 56-94 214-246 (590)
373 3k4h_A Putative transcriptiona 20.9 1.1E+02 0.0037 18.6 3.3 37 22-69 68-104 (292)
374 2zay_A Response regulator rece 20.8 1.1E+02 0.0036 16.2 4.7 42 23-68 52-93 (147)
375 2kpo_A Rossmann 2X2 fold prote 20.6 99 0.0034 15.7 4.1 22 41-64 37-58 (110)
376 3fkr_A L-2-keto-3-deoxyarabona 20.6 1E+02 0.0036 19.7 3.2 59 22-86 102-163 (309)
377 2khz_A C-MYC-responsive protei 20.5 1.3E+02 0.0045 17.2 3.8 42 19-68 73-114 (165)
378 3rpe_A MDAB, modulator of drug 20.4 1.6E+02 0.0053 17.9 4.6 34 19-52 79-112 (218)
379 3kht_A Response regulator; PSI 20.3 1.1E+02 0.0037 16.1 3.2 23 46-68 70-92 (144)
380 2xmo_A LMO2642 protein; phosph 20.3 2E+02 0.0067 19.0 4.7 42 22-67 91-136 (443)
381 3t6k_A Response regulator rece 20.2 1.1E+02 0.0037 16.1 4.5 42 23-68 48-89 (136)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.7e-32 Score=168.99 Aligned_cols=109 Identities=32% Similarity=0.501 Sum_probs=102.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||+++|..+++.++++++++++|||++++.||+.+..|+..+..... .++|+++||||+|+.+.+.++.+++.
T Consensus 64 l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~ 142 (216)
T 4dkx_A 64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGE 142 (216)
T ss_dssp EEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHh
Confidence 68999999999999999999999999999999999999999999999987653 57899999999999888889999999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++++++++++|||++|.||+++|+.++.
T Consensus 143 ~~a~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 143 RKAKELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred hHHHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 999999999999999999999999998863
No 2
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.8e-27 Score=141.02 Aligned_cols=110 Identities=35% Similarity=0.532 Sum_probs=85.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 130 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR 130 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999887655568999999999999877788888888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 160 (166)
T 3q72_A 131 ACAVVFDCKFIETSAALHHNVQALFEGVVR 160 (166)
T ss_dssp HHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred HHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence 899999999999999999999999999864
No 3
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.95 E-value=3.3e-27 Score=142.02 Aligned_cols=110 Identities=42% Similarity=0.713 Sum_probs=101.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~ 147 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGK 147 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHH
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHH
Confidence 57899999999999999999999999999999999999999999999987666678999999999999877788888899
Q ss_pred HHHHHhCCcEEEeecC-CCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAK-AKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~-~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||+ +|.|++++|+++.+
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~ 178 (183)
T 3kkq_A 148 EMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178 (183)
T ss_dssp HHHHHHTCCEEEEBCSSSCBSHHHHHHHHHH
T ss_pred HHHHHhCCeEEEeccCCCCCCHHHHHHHHHH
Confidence 9999999999999999 99999999998864
No 4
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=143.22 Aligned_cols=110 Identities=29% Similarity=0.481 Sum_probs=98.4
Q ss_pred ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||+|++++.. ++..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++.
T Consensus 74 l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 153 (195)
T 3cbq_A 74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 153 (195)
T ss_dssp EEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHH
Confidence 68999999998764 78888999999999999999999999999999988765445799999999999987677778888
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++++.++++++++||++|.|++++|+++++
T Consensus 154 ~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 154 RHLAGTLSCKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp HHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 8899988999999999999999999998864
No 5
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.95 E-value=1.8e-27 Score=142.96 Aligned_cols=110 Identities=33% Similarity=0.546 Sum_probs=99.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..++..
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 135 (181)
T 3t5g_A 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK 135 (181)
T ss_dssp EEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHH
Confidence 68999999999999999999999999999999999999999999999988766568999999999999877888889999
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++.++++++++||++|.|++++|+++.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 136 ALAESWNAAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp HHHHHTTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=143.22 Aligned_cols=109 Identities=33% Similarity=0.460 Sum_probs=99.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~ 158 (201)
T 2hup_A 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQ 158 (201)
T ss_dssp EEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999988764 356899999999999876677788888
Q ss_pred HHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...++ +++++||++|.|++++|+++.+
T Consensus 159 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 159 SLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp HHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999 9999999999999999998864
No 7
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.95 E-value=6e-27 Score=138.67 Aligned_cols=110 Identities=78% Similarity=1.108 Sum_probs=100.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.+.+..++..
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 132 (167)
T 1c1y_A 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ 132 (167)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999888765568999999999999876777788888
Q ss_pred HHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF-ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.+ +++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 133 NLARQWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp HHHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 888887 789999999999999999999864
No 8
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=8.1e-27 Score=138.01 Aligned_cols=110 Identities=44% Similarity=0.703 Sum_probs=98.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+....++..
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 133 (168)
T 1u8z_A 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK 133 (168)
T ss_dssp EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHH
Confidence 68999999999999999999999999999999999999999999999988776568999999999999876677788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 134 NRADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 899889999999999999999999999864
No 9
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=4.9e-27 Score=139.49 Aligned_cols=110 Identities=28% Similarity=0.469 Sum_probs=94.5
Q ss_pred ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+.+|||||++++.. ++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+..
T Consensus 53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 132 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 132 (169)
T ss_dssp EEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHH
Confidence 67999999998865 77778999999999999999999999999999998876556899999999999987778888889
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++++..+++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 133 RHLAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 10
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.95 E-value=5.1e-27 Score=141.17 Aligned_cols=109 Identities=36% Similarity=0.606 Sum_probs=85.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~ 137 (183)
T 2fu5_C 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGE 137 (183)
T ss_dssp EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred EEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 256899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 138 KLALDYGIKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp HHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 11
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=138.03 Aligned_cols=110 Identities=35% Similarity=0.545 Sum_probs=91.2
Q ss_pred ceEEeCCCccc--chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQ--FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++. +..+...+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++
T Consensus 54 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 133 (175)
T 2nzj_A 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEE 133 (175)
T ss_dssp EEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHH
Confidence 67999999988 5677888899999999999999999999999999888775444579999999999998767777778
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++..++++++++||++|.|++++|+++.+
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 165 (175)
T 2nzj_A 134 GRACAVVFDCKFIETSATLQHNVAELFEGVVR 165 (175)
T ss_dssp HHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 88888889999999999999999999999864
No 12
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=140.30 Aligned_cols=110 Identities=44% Similarity=0.705 Sum_probs=101.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 143 (206)
T 2bov_A 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK 143 (206)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHH
Confidence 68999999999999999999999999999999999999999999999988765568999999999999876677788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++++++++||++|.|++++|+++.+
T Consensus 144 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 144 NRAEQWNVNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp HHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 899889999999999999999999998864
No 13
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=9.2e-27 Score=137.65 Aligned_cols=110 Identities=55% Similarity=0.855 Sum_probs=100.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+.+.+..+...
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 132 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR 132 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999888765568999999999999776777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp HHHHHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence 889889999999999999999999998864
No 14
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.9e-26 Score=139.53 Aligned_cols=110 Identities=29% Similarity=0.449 Sum_probs=100.1
Q ss_pred ceEEeCCCcccch-hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFT-AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||||++++. .++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+.+.+..+..
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 150 (189)
T 1z06_A 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 150 (189)
T ss_dssp EEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH
Confidence 6899999999998 889999999999999999999999999999999998876556899999999999987667778888
Q ss_pred HHHHHHhCCcEEEeecCCC---CChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAK---VNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~---~~v~~~~~~l~~ 111 (112)
.+++...+++++++||++| .|++++|+++.+
T Consensus 151 ~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 151 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred HHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 8899989999999999999 999999999875
No 15
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=2.4e-26 Score=138.92 Aligned_cols=110 Identities=30% Similarity=0.537 Sum_probs=100.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 151 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAR 151 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999988765567999999999999876677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 152 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 181 (195)
T 3bc1_A 152 ELAEKYGIPYFETSAANGTNISHAIEMLLD 181 (195)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 899889999999999999999999998764
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.4e-26 Score=141.79 Aligned_cols=109 Identities=34% Similarity=0.458 Sum_probs=98.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus 77 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~ 155 (201)
T 2ew1_A 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAE 155 (201)
T ss_dssp EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999887754 356899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 156 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (201)
T 2ew1_A 156 EFSEAQDMYYLETSAKESDNVEKLFLDLAC 185 (201)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998763
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.94 E-value=3.8e-26 Score=136.93 Aligned_cols=109 Identities=28% Similarity=0.416 Sum_probs=99.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus 63 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~ 141 (181)
T 2efe_B 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQ 141 (181)
T ss_dssp EEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHH
Confidence 6899999999999999999999999999999999999999999999988764 257899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 142 TYAQENGLFFMETSAKTATNVKEIFYEIAR 171 (181)
T ss_dssp HHHHHTTCEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 899989999999999999999999999864
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.94 E-value=2.3e-26 Score=136.39 Aligned_cols=109 Identities=30% Similarity=0.470 Sum_probs=98.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+....++..
T Consensus 57 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~ 135 (170)
T 1r2q_A 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQ 135 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999887753 257899999999999766667778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 136 SYADDNSLLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999999864
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2e-26 Score=138.09 Aligned_cols=109 Identities=33% Similarity=0.609 Sum_probs=91.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+...
T Consensus 62 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 140 (180)
T 2g6b_A 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGE 140 (180)
T ss_dssp EEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHH
Confidence 68999999999999999999999999999999999999999999998887643 57899999999999877777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 141 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 141 KLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998764
No 20
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.94 E-value=7.2e-27 Score=139.77 Aligned_cols=110 Identities=31% Similarity=0.452 Sum_probs=97.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCc-EEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP-MVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.| +++|+||+|+.+.+.+..++
T Consensus 58 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~ 137 (178)
T 2hxs_A 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK 137 (178)
T ss_dssp EEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH
Confidence 789999999999999999999999999999999999999999999888765321 2455 78999999998766777788
Q ss_pred HHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++..+++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 138 HLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp HHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 88899989999999999999999999999864
No 21
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.94 E-value=2.1e-26 Score=138.46 Aligned_cols=110 Identities=44% Similarity=0.705 Sum_probs=101.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus 68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 147 (187)
T 2a9k_A 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK 147 (187)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 68999999999999999999999999999999999999999999999988776568999999999999876677788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+++.+
T Consensus 148 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 148 NRAEQWNVNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 899989999999999999999999999864
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.94 E-value=1.5e-26 Score=138.57 Aligned_cols=110 Identities=45% Similarity=0.745 Sum_probs=99.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+.+.+..+...
T Consensus 59 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 138 (181)
T 2fn4_A 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS 138 (181)
T ss_dssp EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH
Confidence 67999999999999999999999999999999999999999999999876655567999999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 139 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 139 AFGASHHVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 23
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=143.23 Aligned_cols=110 Identities=31% Similarity=0.514 Sum_probs=98.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+...+..
T Consensus 74 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 153 (201)
T 3oes_A 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK 153 (201)
T ss_dssp EEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999988665567999999999999877788888889
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 154 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 154 KLAESWGATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp HHHHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=4.2e-26 Score=135.26 Aligned_cols=109 Identities=33% Similarity=0.474 Sum_probs=98.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---ccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE---RVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~ 78 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. +.+..+
T Consensus 54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~ 132 (170)
T 1ek0_A 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVARE 132 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHH
T ss_pred EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHH
Confidence 6899999999999999999999999999999999999999999999887764 357899999999999754 566777
Q ss_pred HHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++...+++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 133 EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888889999999999999999999999875
No 25
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.94 E-value=4.9e-26 Score=138.99 Aligned_cols=109 Identities=41% Similarity=0.666 Sum_probs=99.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 137 (203)
T 1zbd_A 59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGR 137 (203)
T ss_dssp EEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHH
T ss_pred EEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 356899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++..++++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 138 QLADHLGFEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp HHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999999998763
No 26
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.94 E-value=4.2e-26 Score=136.34 Aligned_cols=109 Identities=35% Similarity=0.480 Sum_probs=98.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++.+
T Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 144 (179)
T 1z0f_A 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEAQRDVTYEEAK 144 (179)
T ss_dssp EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999988877542 57899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 145 QFAEENGLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998764
No 27
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=137.22 Aligned_cols=108 Identities=35% Similarity=0.526 Sum_probs=99.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+........
T Consensus 60 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~ 137 (181)
T 3tw8_B 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAY 137 (181)
T ss_dssp EEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987754 57899999999999877777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 138 KFAGQMGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp HHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 28
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.94 E-value=2.7e-26 Score=139.13 Aligned_cols=109 Identities=38% Similarity=0.562 Sum_probs=98.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++..
T Consensus 72 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~ 150 (191)
T 2a5j_A 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGE 150 (191)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 357899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 151 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (191)
T 2a5j_A 151 AFAREHGLIFMETSAKTACNVEEAFINTAK 180 (191)
T ss_dssp HHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=3.1e-26 Score=139.02 Aligned_cols=109 Identities=28% Similarity=0.463 Sum_probs=99.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus 74 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~ 152 (192)
T 2fg5_A 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAK 152 (192)
T ss_dssp EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987754 357899999999999766677788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 153 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 153 EYAESIGAIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp HHHHTTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 999989999999999999999999999864
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.94 E-value=5.2e-26 Score=137.94 Aligned_cols=109 Identities=36% Similarity=0.574 Sum_probs=100.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+......
T Consensus 67 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~ 145 (196)
T 3tkl_A 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAK 145 (196)
T ss_dssp EEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECcccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999877643 57899999999999877778888888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++..++++++++||++|.|++++|+++.+
T Consensus 146 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 175 (196)
T 3tkl_A 146 EFADSLGIPFLETSAKNATNVEQSFMTMAA 175 (196)
T ss_dssp HHHHHTTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 31
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.2e-26 Score=140.80 Aligned_cols=110 Identities=35% Similarity=0.540 Sum_probs=95.5
Q ss_pred ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+.+|||+|++. +..+.+.++++++++++|||++++.+|+.+..|...+.+.....++|+++|+||+|+.+.+.+..++.
T Consensus 89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~ 168 (211)
T 2g3y_A 89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG 168 (211)
T ss_dssp EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH
Confidence 57899999987 56677778899999999999999999999999988887643335799999999999976667777777
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..+++++++|||++|.||+++|+++++
T Consensus 169 ~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~ 199 (211)
T 2g3y_A 169 RACAVVFDCKFIETSAAVQHNVKELFEGIVR 199 (211)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 8888888999999999999999999998864
No 32
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.94 E-value=4e-26 Score=137.48 Aligned_cols=109 Identities=31% Similarity=0.441 Sum_probs=98.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus 61 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 139 (186)
T 2bme_A 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEAS 139 (186)
T ss_dssp EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECcccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999988876543 57899999999999776677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 140 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 140 RFAQENELMFLETSALTGENVEEAFVQCAR 169 (186)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 899889999999999999999999998764
No 33
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.5e-26 Score=140.28 Aligned_cols=109 Identities=41% Similarity=0.669 Sum_probs=100.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+....++..
T Consensus 74 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 152 (191)
T 3dz8_A 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQ 152 (191)
T ss_dssp EEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence 7899999999999999999999999999999999999999999999987753 357899999999999877778888888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 153 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 153 LLAEQLGFDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 34
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.94 E-value=3.7e-26 Score=138.12 Aligned_cols=105 Identities=22% Similarity=0.406 Sum_probs=93.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--CcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~ 79 (112)
+++|||+|++++. +++++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+. ..+.+..++
T Consensus 69 l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~ 143 (184)
T 3ihw_A 69 LLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSR 143 (184)
T ss_dssp EEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHH
T ss_pred EEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHH
Confidence 6789999999876 778999999999999999999999999999876544678999999999994 456677888
Q ss_pred HHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+++..++ ++++++||++|.|++++|+++.+
T Consensus 144 ~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 144 ARKLSTDLKRCTYYETCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp HHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHH
Confidence 899999887 89999999999999999999864
No 35
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.94 E-value=1.5e-26 Score=142.76 Aligned_cols=108 Identities=24% Similarity=0.410 Sum_probs=98.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|||++++.+++. +..|+..+.... .+.|+++|+||+|+.+.
T Consensus 77 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 154 (214)
T 3q3j_B 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELS 154 (214)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhc
Confidence 6899999999999999999999999999999999999998 689999998764 57999999999999753
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCC-hhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVN-SWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-v~~~~~~l~~ 111 (112)
+.+..++..++++.+++ ++++|||++|.| ++++|+.+.+
T Consensus 155 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~ 199 (214)
T 3q3j_B 155 HQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199 (214)
T ss_dssp HTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred ccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHH
Confidence 56778889999999999 999999999998 9999998763
No 36
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.94 E-value=4.1e-26 Score=138.07 Aligned_cols=109 Identities=40% Similarity=0.651 Sum_probs=98.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+
T Consensus 73 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 151 (189)
T 2gf9_A 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGR 151 (189)
T ss_dssp EEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999887753 357899999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+++.+
T Consensus 152 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 152 RLADDLGFEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999999999998864
No 37
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.94 E-value=2.3e-26 Score=136.61 Aligned_cols=109 Identities=31% Similarity=0.474 Sum_probs=91.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..++..
T Consensus 57 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 135 (170)
T 1z08_A 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEKERHVSIQEAE 135 (170)
T ss_dssp EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG-GGSEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEECcccccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999988876542 46899999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 136 SYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999999864
No 38
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.94 E-value=8.2e-26 Score=136.19 Aligned_cols=109 Identities=50% Similarity=0.805 Sum_probs=96.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ +....+...
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~ 132 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQ 132 (189)
T ss_dssp EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHH
Confidence 6789999999999999999999999999999999999999999999998876667899999999999974 455677888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 133 DLARSYGIPFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999998864
No 39
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.94 E-value=1.8e-26 Score=142.25 Aligned_cols=110 Identities=31% Similarity=0.533 Sum_probs=99.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+...
T Consensus 86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~ 165 (217)
T 2f7s_A 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR 165 (217)
T ss_dssp EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHH
Confidence 78999999999999999999999999999999999999999999888766543367999999999999876677788888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 166 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 195 (217)
T 2f7s_A 166 ELADKYGIPYFETSAATGQNVEKAVETLLD 195 (217)
T ss_dssp HHHHHTTCCEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 40
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=3.5e-26 Score=139.71 Aligned_cols=110 Identities=22% Similarity=0.256 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCC-cccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEE-ERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~ 78 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+ .+.+..+
T Consensus 75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~ 154 (208)
T 2yc2_C 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD 154 (208)
T ss_dssp EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence 78999999999999999999999999999999999999999999999988654 25789999999999987 6677788
Q ss_pred HHHHHHHHhCCcEEEeecCC-CCChhHHhhhhcc
Q psy785 79 QGASLARAFACTFLETSAKA-KVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~~~~~~Sa~~-~~~v~~~~~~l~~ 111 (112)
+..++++.++++++++||++ |.|++++|+++.+
T Consensus 155 ~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 155 MAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp HHHHHHHHTTCEEEECCC-------CHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHH
Confidence 88899999999999999999 9999999998864
No 41
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=139.93 Aligned_cols=109 Identities=28% Similarity=0.443 Sum_probs=94.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++++..+ ..+++++|++++|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.+.+..++
T Consensus 71 l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 149 (187)
T 3c5c_A 71 LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE 149 (187)
T ss_dssp EEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH
Confidence 689999999988775 6689999999999999999999999999999887642 2578999999999998767778888
Q ss_pred HHHHHHHhCCcEEEeec-CCCCChhHHhhhhcc
Q psy785 80 GASLARAFACTFLETSA-KAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~~~~~~~Sa-~~~~~v~~~~~~l~~ 111 (112)
..++++.++++++++|| ++|.|++++|+.+.+
T Consensus 150 ~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 150 GVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 89999999999999999 899999999998864
No 42
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.94 E-value=6.4e-26 Score=138.80 Aligned_cols=109 Identities=38% Similarity=0.530 Sum_probs=98.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 137 (206)
T 2bcg_Y 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAK 137 (206)
T ss_dssp EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999887754 357899999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 138 EFADANKMPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp HHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998864
No 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=4.1e-26 Score=138.82 Aligned_cols=109 Identities=39% Similarity=0.594 Sum_probs=99.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||+++ ...+..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..++..
T Consensus 78 ~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 156 (196)
T 2atv_A 78 MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGE 156 (196)
T ss_dssp EEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHH
Confidence 78999999998 77888999999999999999999999999999999888765568999999999999876777788888
Q ss_pred HHHHHhCCcEEEeecCCCC-ChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKV-NSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~ 111 (112)
+++..++++++++||++|. |++++|+++.+
T Consensus 157 ~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 157 KLATELACAFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp HHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred HHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence 8999899999999999999 99999998864
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.94 E-value=1.2e-25 Score=133.45 Aligned_cols=109 Identities=30% Similarity=0.459 Sum_probs=98.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ....|+++|+||+|+.+.+.+..+...
T Consensus 57 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~ 135 (170)
T 1z0j_A 57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAK 135 (170)
T ss_dssp EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHH
Confidence 6799999999999999999999999999999999999999999999887753 367899999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 136 DYADSIHAIFVETSAKNAININELFIEISR 165 (170)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 45
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.94 E-value=5.9e-26 Score=137.85 Aligned_cols=108 Identities=28% Similarity=0.506 Sum_probs=96.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--ccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE--RVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~ 78 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+.... .++|+++|+||+|+.+. +.+..+
T Consensus 73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~ 150 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQ 150 (194)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHH
T ss_pred EEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHH
Confidence 68999999999999999999999999999999999999997 67888887653 56899999999999753 567788
Q ss_pred HHHHHHHHhCCc-EEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAFACT-FLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++++.++++ ++++||++|.|++++|+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 151 EGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp HHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 888999999997 999999999999999998864
No 46
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9e-26 Score=136.95 Aligned_cols=108 Identities=23% Similarity=0.434 Sum_probs=96.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.+.. .++|+++|+||+|+.+.
T Consensus 68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 145 (194)
T 2atx_A 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLN 145 (194)
T ss_dssp EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHT
T ss_pred EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcc
Confidence 689999999999999999999999999999999999999987 7988888753 47999999999999753
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++..++++.+++ +++++||++|.|++++|+++.+
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 146 DMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 35667788889998888 9999999999999999998864
No 47
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.94 E-value=4.1e-26 Score=135.18 Aligned_cols=108 Identities=31% Similarity=0.519 Sum_probs=98.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++..
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~ 133 (168)
T 1z2a_A 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE 133 (168)
T ss_dssp EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999988765 57899999999999876677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 134 GLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp HHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 899999999999999999999999998764
No 48
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=6.6e-26 Score=134.62 Aligned_cols=110 Identities=41% Similarity=0.673 Sum_probs=97.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.... .+.|+++|+||+|+.+.+.+.....
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~ 132 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEA 132 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHH
Confidence 689999999999999999999999999999999999999988898888775432 5789999999999987667777778
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++...+++++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (172)
T 2erx_A 133 EALARTWKCAFMETSAKLNHNVKELFQELLN 163 (172)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEecCCCCcCHHHHHHHHHH
Confidence 8888888999999999999999999999864
No 49
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=5.6e-26 Score=138.72 Aligned_cols=108 Identities=13% Similarity=0.187 Sum_probs=88.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..+++.+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+ ..+.++..
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~ 148 (198)
T 1f6b_A 71 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLR 148 (198)
T ss_dssp EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHH
T ss_pred EEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHH
Confidence 6899999999999999999999999999999999999999999999887754446799999999999974 44566666
Q ss_pred HHHHH-----------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARA-----------------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++.. .++++++|||++|.|++++|+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 149 EMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp HHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred HHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 65542 2358999999999999999999875
No 50
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.94 E-value=4.1e-26 Score=139.39 Aligned_cols=109 Identities=32% Similarity=0.429 Sum_probs=98.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus 76 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~ 154 (200)
T 2o52_A 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEAS 154 (200)
T ss_dssp EEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999998876543 57899999999999776677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 155 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 184 (200)
T 2o52_A 155 RFAQENELMFLETSALTGENVEEAFLKCAR 184 (200)
T ss_dssp HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 889889999999999999999999998764
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9.2e-26 Score=136.65 Aligned_cols=109 Identities=35% Similarity=0.504 Sum_probs=97.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ +.+..++..
T Consensus 66 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~ 144 (195)
T 1x3s_A 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGL 144 (195)
T ss_dssp EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHH
T ss_pred EEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHH
Confidence 6899999999999999999999999999999999999999999999988765446799999999999954 556677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++...+++++++||++|.|++++|+++.+
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 145 KFARKHSMLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998864
No 52
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=3.3e-26 Score=138.72 Aligned_cols=106 Identities=18% Similarity=0.251 Sum_probs=92.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+++|||||++++..+++.+++++|++++|+|++ +.++++.+..|+..+.. ...+.|+++|+||+|+.+ ..
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~--~~ 151 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD--AL 151 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT--CC
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc--cc
Confidence 789999999999999999999999999999999 56778888888877732 236799999999999975 36
Q ss_pred cHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..++++..++ +++++||++|.|++++|+++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 152 PVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp CHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence 67888888888899 9999999999999999999864
No 53
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.94 E-value=1.1e-25 Score=134.55 Aligned_cols=109 Identities=33% Similarity=0.510 Sum_probs=98.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++...+..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+...+..
T Consensus 65 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 143 (179)
T 2y8e_A 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGE 143 (179)
T ss_dssp EEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCcccccCcCCHHHHH
Confidence 68999999999999999999999999999999999999999999998877542 56899999999999876777778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 144 RKAKELNVMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp HHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998864
No 54
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.6e-26 Score=141.18 Aligned_cols=109 Identities=29% Similarity=0.417 Sum_probs=95.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++..
T Consensus 64 ~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~ 142 (223)
T 3cpj_B 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESK 142 (223)
T ss_dssp EEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHH
T ss_pred EEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999999987753 357899999999999876677778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 172 (223)
T 3cpj_B 143 TFAQENQLLFTETSALNSENVDKAFEELIN 172 (223)
T ss_dssp HHHHHTTCEEEECCCC-CCCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 899889999999999999999999998763
No 55
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=4.1e-26 Score=136.88 Aligned_cols=108 Identities=27% Similarity=0.497 Sum_probs=94.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------ 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------ 74 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 135 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHP 135 (182)
T ss_dssp CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC-
T ss_pred EEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccc
Confidence 679999999999999999999999999999999999999987 6988887754 4789999999999865443
Q ss_pred ----ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 75 ----VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ----~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++..+++..++. +++++||++|.|++++|+++.+
T Consensus 136 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 136 GAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp -CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 366778888888887 9999999999999999998864
No 56
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=136.74 Aligned_cols=109 Identities=37% Similarity=0.561 Sum_probs=97.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++.+
T Consensus 77 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~ 155 (192)
T 2il1_A 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGE 155 (192)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999988887653 357899999999999876777777888
Q ss_pred HHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF-ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.. +++++++||++|.|++++|+++.+
T Consensus 156 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 156 KFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp HHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888874 789999999999999999998864
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=137.13 Aligned_cols=109 Identities=31% Similarity=0.530 Sum_probs=95.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC------Ccccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE------EERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~------~~~~~ 75 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+
T Consensus 79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v 157 (199)
T 2p5s_A 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCV 157 (199)
T ss_dssp EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCC
T ss_pred EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccccccccccccccc
Confidence 6899999999999999999999999999999999999999999998887653 2468999999999986 33556
Q ss_pred cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+...+++...+++++++||++|.|++++|+++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 158 PGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp CHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 677888888889999999999999999999998864
No 58
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.93 E-value=4.7e-25 Score=130.05 Aligned_cols=109 Identities=49% Similarity=0.771 Sum_probs=98.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++++|++++.+++.+..|+..+.......+.|+++++||+|+.+ +....+...
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~ 131 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQ 131 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHH
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHH
Confidence 6799999999999999999999999999999999999999999999988876556799999999999876 455677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++++++.+
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 132 DLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp HHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998864
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.93 E-value=1.4e-25 Score=133.09 Aligned_cols=108 Identities=36% Similarity=0.567 Sum_probs=96.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+....+...
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~ 131 (170)
T 1g16_A 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME-TRVVTADQGE 131 (170)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TCCSCHHHHH
T ss_pred EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCC-cCccCHHHHH
Confidence 6899999999999999999999999999999999999999999999887754 2478999999999994 4556677888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 132 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 132 ALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp HHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998764
No 60
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=135.67 Aligned_cols=109 Identities=30% Similarity=0.434 Sum_probs=98.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+...
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~ 154 (193)
T 2oil_A 76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEAR 154 (193)
T ss_dssp EEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHH
Confidence 6899999999999999999999999999999999999999999998887643 357899999999999876667778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 155 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (193)
T 2oil_A 155 MFAENNGLLFLETSALDSTNVELAFETVLK 184 (193)
T ss_dssp HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998764
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.93 E-value=5.4e-25 Score=131.48 Aligned_cols=109 Identities=29% Similarity=0.520 Sum_probs=96.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.|+++|+||+|+. .+....+
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~ 136 (177)
T 1wms_A 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTE 136 (177)
T ss_dssp EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHH
T ss_pred EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHH
Confidence 689999999999999999999999999999999999999999999988776542 568999999999997 3556677
Q ss_pred HHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLAR-AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++++ ..+++++++||++|.|++++|+++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 137 EAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp HHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 7888887 45789999999999999999998864
No 62
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=1.6e-25 Score=135.91 Aligned_cols=109 Identities=16% Similarity=0.235 Sum_probs=92.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+ ..+.++..
T Consensus 69 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~ 146 (190)
T 1m2o_B 69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELR 146 (190)
T ss_dssp EEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHH
Confidence 6899999999999999999999999999999999999999999998887754446799999999999975 34455555
Q ss_pred HHHHH------------hCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLARA------------FACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+.... .+++++++||++|.|++++|+++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 147 SALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp HHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred HHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 54432 34589999999999999999998753
No 63
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.93 E-value=3.4e-25 Score=132.64 Aligned_cols=105 Identities=22% Similarity=0.393 Sum_probs=88.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEeeCCCCC--CcccccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLE--EERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~D~~--~~~~~~~ 77 (112)
+++|||||+++ ..+++++|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+. ..+.+..
T Consensus 56 l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~ 130 (178)
T 2iwr_A 56 VLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD 130 (178)
T ss_dssp EEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH
T ss_pred EEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH
Confidence 68999999987 4578899999999999999999999998766655443 2578999999999994 3456777
Q ss_pred HHHHHHHHHh-CCcEEEeecCCCCChhHHhhhhcc
Q psy785 78 EQGASLARAF-ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++..+++... +++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 131 ARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp HHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHH
Confidence 8888888876 689999999999999999998864
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=136.18 Aligned_cols=108 Identities=29% Similarity=0.454 Sum_probs=95.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~ 147 (201)
T 2q3h_A 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELD 147 (201)
T ss_dssp EEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhc
Confidence 679999999999999999999999999999999999999986 7998887754 47999999999999652
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++...++..++. +++++||++|.|++++|+++.+
T Consensus 148 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 148 KCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191 (201)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHH
Confidence 45667778888888887 9999999999999999998864
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.93 E-value=5e-25 Score=133.94 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=95.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| ...+....++..
T Consensus 95 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~ 170 (208)
T 3clv_A 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQ 170 (208)
T ss_dssp EEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHH
Confidence 6899999999999999999999999999999999999999999999988753 389999999999 444666778888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++..+++++++||++|.|++++|+++.+
T Consensus 171 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 171 KYAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp HHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998864
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.93 E-value=5.2e-25 Score=133.14 Aligned_cols=109 Identities=50% Similarity=0.791 Sum_probs=88.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ +....++..
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~ 149 (190)
T 3con_A 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAH 149 (190)
T ss_dssp EEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHH
T ss_pred EEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHH
Confidence 6899999999999999999999999999999999999999999999988776556799999999999976 455677888
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++++.++++++++||++|.|++++|+++.+
T Consensus 150 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 150 ELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 889989999999999999999999998864
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.93 E-value=3.5e-26 Score=135.19 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=87.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+..
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~ 123 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEIT 123 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHH
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHH
Confidence 689999999999999999999999999999999999999999998888765444679999999999996532 222222
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ...+++++++||++|.|++++|+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 124 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 111 112457999999999999999998864
No 68
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.93 E-value=1.3e-25 Score=135.46 Aligned_cols=108 Identities=23% Similarity=0.405 Sum_probs=94.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||+++|..++..+++++|++++|+|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 57 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 134 (184)
T 1m7b_A 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELS 134 (184)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHH
T ss_pred EEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhh
Confidence 68999999999999999999999999999999999999998 68988887754 57899999999999742
Q ss_pred ----ccccHHHHHHHHHHhC-CcEEEeecC-CCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFA-CTFLETSAK-AKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~v~~~~~~l~~ 111 (112)
+.++.++..++++.++ .+++++||+ ++.|++++|+.+.+
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 135 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence 4566778888998887 699999999 68999999998764
No 69
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.93 E-value=5.6e-26 Score=139.62 Aligned_cols=108 Identities=26% Similarity=0.517 Sum_probs=93.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------ 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------ 74 (112)
+++|||||+++|..++..+++++|++++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.+.
T Consensus 59 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 136 (212)
T 2j0v_A 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHT 136 (212)
T ss_dssp EEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCS
T ss_pred EEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCcccccccc
Confidence 689999999999999999999999999999999999999986 7998887754 4799999999999875443
Q ss_pred --ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 75 --VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++..+++..++. +++++||++|.|++++|+++.+
T Consensus 137 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (212)
T 2j0v_A 137 NVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176 (212)
T ss_dssp SCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHH
Confidence 357778888888886 9999999999999999998864
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.93 E-value=4.6e-25 Score=132.12 Aligned_cols=110 Identities=28% Similarity=0.491 Sum_probs=86.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCC-cccccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEE-ERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~ 77 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+...... .++|+++|+||+|+.+ .+.+..
T Consensus 60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~ 139 (182)
T 1ky3_A 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE 139 (182)
T ss_dssp EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence 689999999999999999999999999999999999999999999988776532 5789999999999953 345567
Q ss_pred HHHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 78 EQGASLAR-AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++..+++. ..+++++++||++|.|++++|+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (182)
T 1ky3_A 140 KSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174 (182)
T ss_dssp HHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHH
Confidence 77788887 45679999999999999999998864
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.93 E-value=2.6e-25 Score=133.72 Aligned_cols=108 Identities=22% Similarity=0.394 Sum_probs=94.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 132 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK 132 (186)
T ss_dssp EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHH
T ss_pred EEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhc
Confidence 679999999999999999999999999999999999999987 6888887754 37899999999998653
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++...+++..+. +++++||++|.|++++|+++.+
T Consensus 133 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (186)
T 1mh1_A 133 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176 (186)
T ss_dssp HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHH
Confidence 34566777888888887 9999999999999999998764
No 72
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=137.83 Aligned_cols=108 Identities=25% Similarity=0.501 Sum_probs=81.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..
T Consensus 84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 161 (214)
T 2j1l_A 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLR 161 (214)
T ss_dssp EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHH
T ss_pred EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhc
Confidence 689999999999999999999999999999999999999986 7988887754 568999999999997542
Q ss_pred -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..++..++++..++ +++++||++|.|++++|+++.+
T Consensus 162 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 162 RNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 4566777888888887 9999999999999999998764
No 73
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.93 E-value=7.1e-25 Score=133.31 Aligned_cols=110 Identities=35% Similarity=0.519 Sum_probs=92.7
Q ss_pred ceEEeCCCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+.+|||+|++. +..+.+.+++.+|++++|||++++.+++.+..|...+.......+.|+++|+||+|+.+.+.+..++.
T Consensus 58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~ 137 (192)
T 2cjw_A 58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG 137 (192)
T ss_dssp EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH
Confidence 57899999886 45577788899999999999999999999999988887654445799999999999976666777777
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..+++++++|||++|.||+++|+++.+
T Consensus 138 ~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 138 RAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp HHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCCceEEeccccCCCHHHHHHHHHH
Confidence 7788888899999999999999999998764
No 74
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.93 E-value=7e-25 Score=133.94 Aligned_cols=108 Identities=28% Similarity=0.483 Sum_probs=94.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.
T Consensus 75 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 152 (201)
T 2gco_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELA 152 (201)
T ss_dssp EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHH
T ss_pred EEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhc
Confidence 68999999999999999999999999999999999999998 67888877653 47899999999999754
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++..++++..+. +++++||++|.|++++|+++.+
T Consensus 153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 34566777888888888 8999999999999999998864
No 75
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.93 E-value=2.5e-25 Score=136.34 Aligned_cols=108 Identities=23% Similarity=0.426 Sum_probs=95.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCccc------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEERV------ 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~------ 74 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+...
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 157 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK 157 (204)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhh
Confidence 569999999999999999999999999999999999999986 7888887754 5799999999999875432
Q ss_pred ------ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 75 ------VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..++...+++..+. +++++||++|.|++++|+++.+
T Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 566777888888886 6999999999999999999875
No 76
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.93 E-value=2.5e-25 Score=137.19 Aligned_cols=109 Identities=24% Similarity=0.380 Sum_probs=95.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+...
T Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~ 141 (218)
T 4djt_A 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIKNRQKISKKLVM 141 (218)
T ss_dssp EEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC----CCHHHHH
T ss_pred EEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCccccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999877643 45899999999999876677777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...+++++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 142 EVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp HHTTTCCCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred HHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998864
No 77
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.93 E-value=2.9e-25 Score=136.29 Aligned_cols=108 Identities=23% Similarity=0.405 Sum_probs=94.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.+.
T Consensus 78 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 155 (205)
T 1gwn_A 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELS 155 (205)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHH
T ss_pred EEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhc
Confidence 68999999999999999999999999999999999999998 78988887754 56899999999999642
Q ss_pred ----ccccHHHHHHHHHHhC-CcEEEeecC-CCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFA-CTFLETSAK-AKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~v~~~~~~l~~ 111 (112)
+.+..++..++++.++ +++++|||+ ++.|++++|+.+.+
T Consensus 156 ~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 156 NHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp TTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 4566777888998887 699999999 68999999998764
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=8.1e-25 Score=132.94 Aligned_cols=109 Identities=37% Similarity=0.665 Sum_probs=95.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.|+++|+||+|+.+ +....+..
T Consensus 58 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~ 136 (199)
T 2gf0_A 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREA 136 (199)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHH
T ss_pred EEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHH
Confidence 689999999999999999999999999999999999999988888777765432 4689999999999975 45567777
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..++++++++||++|.|++++|+++.+
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 137 QAVAQEWKCAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp HHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence 8888889999999999999999999999864
No 79
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=9.1e-25 Score=134.03 Aligned_cols=108 Identities=34% Similarity=0.566 Sum_probs=96.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+. .+....+...
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~ 148 (213)
T 3cph_A 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDME-TRVVTADQGE 148 (213)
T ss_dssp EEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT-TCSEEEEEEECTTCS-SCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCc-ccccCHHHHH
Confidence 68999999999999999999999999999999999999999999988877542 468999999999994 4556677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++++++++||++|.|++++|+++.+
T Consensus 149 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 149 ALAKELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp HHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888889999999999999999999998763
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=1.8e-25 Score=135.88 Aligned_cols=108 Identities=14% Similarity=0.250 Sum_probs=88.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-------CCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-------DDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~D~~~~~~ 74 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .++|+++|+||+|+.+...
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 144 (199)
T 4bas_A 65 FTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT 144 (199)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC
T ss_pred EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC
Confidence 689999999999999999999999999999999999999999998888765321 2789999999999975432
Q ss_pred ccHHHHHH------HHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 75 VGKEQGAS------LARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ~~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+..+ +++..+++++++||++|.|++++|+++.+
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 145 --AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp --HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred --HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 121111 11335679999999999999999999864
No 81
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=133.15 Aligned_cols=108 Identities=25% Similarity=0.442 Sum_probs=94.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDL-SDLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+ ..|+..+.... .++|+++|+||+|+.+.
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 152 (207)
T 2fv8_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELA 152 (207)
T ss_dssp EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhh
Confidence 68999999999999999999999999999999999999988 67888887643 57899999999999654
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++...++...+. +++++||++|.|++++|+++.+
T Consensus 153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 153 RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196 (207)
T ss_dssp HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 34566677788888887 9999999999999999998864
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=9e-25 Score=131.61 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=88.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+... .++..
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~ 139 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIA 139 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHH
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHH
Confidence 6899999999999999999999999999999999999999989988876654446799999999999975432 22222
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.. ...++++++|||++|.|++++|+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 140 EGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 211 122468999999999999999999864
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.92 E-value=1.9e-25 Score=132.72 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=88.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+... ..+..
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~ 130 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMA 130 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHH
Confidence 6899999999999999999999999999999999999999988988887654446799999999999975432 22222
Q ss_pred H-H----HHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 S-L----ARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~-~----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. + +...+++++++||++|.|++++|+++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 131 NSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp HHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 1 1 2223568999999999999999998864
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.92 E-value=1e-24 Score=133.29 Aligned_cols=109 Identities=29% Similarity=0.502 Sum_probs=94.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT---DDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .+.|+++|+||+|+. .+....+
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~ 137 (207)
T 1vg8_A 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATK 137 (207)
T ss_dssp EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHH
T ss_pred EEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHH
Confidence 689999999999999999999999999999999999999999999888776532 468999999999997 3455667
Q ss_pred HHHHHHH-HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLAR-AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...+++. ..+++++++||++|.|++++|+++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 138 RAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp HHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 7777777 56789999999999999999998864
No 85
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.92 E-value=1.3e-25 Score=136.41 Aligned_cols=108 Identities=16% Similarity=0.256 Sum_probs=83.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+..
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~ 152 (192)
T 2b6h_A 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELT 152 (192)
T ss_dssp EEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHH
Confidence 689999999999999999999999999999999999999999999888765444679999999999996532 222222
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.. ...+++++++||++|.|++++|+++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 153 DKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp HHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 111 122457999999999999999998864
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.92 E-value=1.9e-26 Score=140.67 Aligned_cols=109 Identities=36% Similarity=0.574 Sum_probs=88.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++++..++..+++++|++++|+|++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+...
T Consensus 84 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~~~ 162 (199)
T 3l0i_B 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTTKKVVDYTTAK 162 (199)
T ss_dssp EEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-C
T ss_pred EEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-CCCCEEEEEECccCCccccCCHHHHH
Confidence 68999999999999999999999999999999999999999999998876432 47899999999999876666666677
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++++++++||++|.|++++|+++.+
T Consensus 163 ~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 163 EFADSLGIPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp HHHHTTTCCBCCCCC---HHHHHHHHHHTT
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 888888999999999999999999999875
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.92 E-value=1.2e-24 Score=130.91 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=89.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.....++|+++|+||+|+.+. ....+..
T Consensus 67 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~ 144 (181)
T 2h17_A 67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEIS 144 (181)
T ss_dssp EEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHH
Confidence 68999999999999999999999999999999999999999999888876543467999999999999652 2233333
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+.. ...+++++++||++|.|++++|+++.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 145 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 322 1235589999999999999999998763
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=129.76 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=90.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+...... .++|+++|+||+|+.+. ...++
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~ 146 (190)
T 2h57_A 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK 146 (190)
T ss_dssp EEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH
Confidence 689999999999999999999999999999999999999999999888776443 57999999999999743 23444
Q ss_pred HHHHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+... ..+++++++||++|.|++++|+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 147 VSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp HHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 444442 13568999999999999999998864
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.5e-24 Score=130.98 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=86.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++++++.+..|+..+.+.....+.|+++|+||+|+.+. ...++..
T Consensus 62 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~ 139 (187)
T 1zj6_A 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEIS 139 (187)
T ss_dssp EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHH
Confidence 68999999999999999999999999999999999999999999998887643467999999999999742 2233333
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ..+++++++||++|.|++++|+++.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 140 QFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHH
Confidence 3322 23568999999999999999999864
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=1.1e-24 Score=132.59 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=87.7
Q ss_pred CceEEeCCCcccchhhH---HhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---
Q psy785 1 MLEILDTAGTEQFTAMR---DLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--- 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--- 72 (112)
.+++|||||+++|.... ..+++++|++++|||+++. ++++.+..|+..+.... .+.|+++|+||+|+.+.
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~ 147 (196)
T 3llu_A 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHK 147 (196)
T ss_dssp CEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHH
T ss_pred EEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhh
Confidence 47899999999987766 8999999999999999997 67777777877765432 57999999999998642
Q ss_pred ----ccccHHHHHHHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLAR----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+......++++ ..++++++|||++ .|++++|+.+++
T Consensus 148 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 148 IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 3344444566676 5678999999999 999999998864
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.92 E-value=9.2e-25 Score=135.05 Aligned_cols=106 Identities=26% Similarity=0.475 Sum_probs=93.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.+.. .++|+++|+||+|+.+.... .+..
T Consensus 66 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~ 141 (221)
T 3gj0_A 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSI 141 (221)
T ss_dssp EEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSC--GGGC
T ss_pred EEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCcccccccc--HHHH
Confidence 6899999999999999999999999999999999999999999999998864 47899999999999754332 2455
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+++..+++++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 171 (221)
T 3gj0_A 142 VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171 (221)
T ss_dssp CHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 677788999999999999999999998764
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=2.6e-24 Score=129.68 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=89.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+... .++..
T Consensus 64 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~ 141 (186)
T 1ksh_A 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQ 141 (186)
T ss_dssp EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHH
Confidence 6899999999999999999999999999999999999999999988887754446799999999999975432 23322
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ..+++++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 142 EALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHH
Confidence 2221 23568999999999999999998864
No 93
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=5.4e-25 Score=133.14 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=87.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.. ...+..
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~ 146 (188)
T 1zd9_A 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELI 146 (188)
T ss_dssp EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHH
Confidence 689999999999999999999999999999999999999999998888765434679999999999997532 222222
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ..+++++++||++|.|++++|+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 147 EKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 2111 12458999999999999999999864
No 94
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=3.7e-25 Score=143.51 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred CceEEeCCCcccchh---hHHhhcccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc---
Q psy785 1 MLEILDTAGTEQFTA---MRDLYMKNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE--- 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~---~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~--- 72 (112)
++++||||||++|.. .++.++++++++++|||++++ ++.+.+..|+..+.+. .+++|++++|||+|+.++
T Consensus 47 ~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp CEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHH
T ss_pred EEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhh
Confidence 479999999999964 468899999999999999987 3444444455555443 257999999999999753
Q ss_pred ----ccccHHHHHHHHHH----hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARA----FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++.+++++. .++++++|||++ .+|+++|..+++
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHH
Confidence 23445555666664 578999999998 699999998875
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.91 E-value=2.2e-25 Score=134.77 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=87.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|+|++++.+++....|+..+.......+.|+++|+||+|+.+... ..+..
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~ 145 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIA 145 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHH
Confidence 6899999999999999999999999999999999999999988988887754446799999999999975322 22222
Q ss_pred HH-----HHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SL-----ARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~-----~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+. +...+++++++||++|.|++++|+++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 146 EQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp HHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhChhhccCCceEEEEccCCCccCHHHHHHHHHH
Confidence 11 1223558999999999999999998864
No 96
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1.3e-24 Score=142.73 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=92.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++|||+||++++.+|..++++++++|+|+|+++ ..+++....|+..+..+....+.|+++++||+|+.+
T Consensus 195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence 7899999999999999999999999999999998 457888888988887754446799999999999853
Q ss_pred cc---------------cccHHHHHHHHH-----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ER---------------VVGKEQGASLAR-----------AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+ ..+.+++.+++. ..++.+++|||+++.||.++|.++.+
T Consensus 275 ~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 275 EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 22 245667777776 24568999999999999999998763
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.90 E-value=1.7e-23 Score=135.80 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=95.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCc--------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEE-------- 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~-------- 72 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+.
T Consensus 205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~ 282 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK 282 (332)
T ss_dssp EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHH
T ss_pred EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhcc
Confidence 569999999999999999999999999999999999999886 6888887754 37899999999998643
Q ss_pred ----ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 ----RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+..++..++++..++ +++++||++|.|++++|+.+.+
T Consensus 283 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 283 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp HTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHH
Confidence 45667788888988887 9999999999999999998764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=1.5e-25 Score=137.04 Aligned_cols=108 Identities=23% Similarity=0.433 Sum_probs=91.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEeeCCCCCCcc-------
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS-DLREQILRVKDTDDVPMVLVGNKCDLEEER------- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~------- 73 (112)
+++|||||++++..++..+++++|++++|+|++++.+++.+. .|+..+.... .++|+++|+||+|+.+..
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~ 157 (204)
T 3th5_A 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLK 157 (204)
Confidence 579999999999999999999999999999999999999886 7887776643 378999999999996532
Q ss_pred -----cccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 74 -----VVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 -----~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+..++..++++..++ +++++||++|.|++++|+++.+
T Consensus 158 ~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 158 EKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 3444556667777787 9999999999999999999875
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=126.27 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=84.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++...+..+++++|++++|+|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+..
T Consensus 64 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~ 141 (183)
T 1moz_A 64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVS 141 (183)
T ss_dssp EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHH
Confidence 689999999999999999999999999999999999999999999888775444679999999999996532 233333
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ..+++++++||++|.|++++|+++.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (183)
T 1moz_A 142 KELNLVELKDRSWSIVASSAIKGEGITEGLDWLID 176 (183)
T ss_dssp HHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred HHhCcccccCCceEEEEccCCCCcCHHHHHHHHHH
Confidence 3221 12457999999999999999998864
No 100
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=6.6e-24 Score=139.41 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=88.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++|||+||+++..+|..++++++++++|+|++ +..+++....|+..+.......+.|+++++||+|+.+
T Consensus 185 l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 264 (354)
T ss_dssp EEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred eEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhh
Confidence 789999999999999999999999999999998 7789999989998887754446799999999999853
Q ss_pred ccc--c-------------------cHHHHHHHHHH----------------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERV--V-------------------GKEQGASLARA----------------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+. . +.+++.+++.. ..+.+++|||+++.||.++|+++.+
T Consensus 265 ~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 265 KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 221 1 13445555332 1235689999999999999998753
No 101
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.89 E-value=9.1e-24 Score=127.44 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=87.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc---H
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG---K 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~---~ 77 (112)
+++|||+|+++|..+++.++++++++++|+|++++ .+++.+..|+..+.... .+.|+++|+||+|+.+.+... .
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~ 135 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMS 135 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHH
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHH
Confidence 68999999999999999999999999999999987 58999999999887653 468999999999997544332 2
Q ss_pred HHHHHHHHHhCCc----EEEeecCCCC-ChhHHhhhhc
Q psy785 78 EQGASLARAFACT----FLETSAKAKV-NSWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~~~~----~~~~Sa~~~~-~v~~~~~~l~ 110 (112)
.....+++..+++ ++++||++|. ++.++++.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~ 173 (184)
T 2zej_A 136 KITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173 (184)
T ss_dssp HHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHH
Confidence 2334455556776 9999999997 9999998875
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=132.25 Aligned_cols=103 Identities=22% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCCcccchhhHHhhcc---------------------cCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy785 7 TAGTEQFTAMRDLYMK---------------------NGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVLV 63 (112)
Q Consensus 7 t~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv 63 (112)
++|+++|..++..+++ ++|++++|||++++ .+++.+..|+..+.+.....++|+++|
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 7788888888888887 89999999999998 899999999998876533356899999
Q ss_pred eeCCCCCCcccccHHHHHHHHHH-hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 64 GNKCDLEEERVVGKEQGASLARA-FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 64 ~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+||+|+.+.+.+ ++..+++.. .+++++++||++|.|++++|+++.+
T Consensus 205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999754443 456667765 4789999999999999999999864
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.1e-23 Score=142.16 Aligned_cols=108 Identities=14% Similarity=0.224 Sum_probs=88.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||||++++..++..+++++|++++|||++++.+++.+..|+..+.+.....++|+++|+||+|+.+.. ...+..
T Consensus 368 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~ 445 (497)
T 3lvq_E 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQ 445 (497)
T ss_dssp EEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHH
Confidence 789999999999999999999999999999999999999999999888776555679999999999997532 222222
Q ss_pred HHH-----HHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLA-----RAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ...+++++++||++|.|++++|+++.+
T Consensus 446 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 446 EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp HHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 211 112346999999999999999999864
No 104
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.88 E-value=2.5e-23 Score=138.33 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=88.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++|||+||+++..+|..++++++++++|+|+++ ..+++....|+..+.......++|+++|+||+|+.+
T Consensus 219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 7899999999999999999999999999999999 889999999999988764446799999999999853
Q ss_pred ccc---c---------------------------cHHHHHHHH-----HH--------hCCcEEEeecCCCCChhHHhhh
Q psy785 72 ERV---V---------------------------GKEQGASLA-----RA--------FACTFLETSAKAKVNSWLCVEC 108 (112)
Q Consensus 72 ~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~v~~~~~~ 108 (112)
.+. . ..+.+..++ .. .++.+++|||+++.||.++|..
T Consensus 299 ~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~ 378 (402)
T 1azs_C 299 EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378 (402)
T ss_dssp HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHH
T ss_pred hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHH
Confidence 221 1 123444443 22 1456789999999999999988
Q ss_pred hc
Q psy785 109 TN 110 (112)
Q Consensus 109 l~ 110 (112)
+.
T Consensus 379 v~ 380 (402)
T 1azs_C 379 CR 380 (402)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.6e-23 Score=136.68 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=83.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||++++..++..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... ..+..
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~ 288 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEIT 288 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHH
Confidence 6899999999999999999999999999999999999999988888877655446899999999999975332 22222
Q ss_pred HHHH-----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR-----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.... ..+++++++||++|.|++++|+++.+
T Consensus 289 ~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 289 DKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp HHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 2111 12457999999999999999999864
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.88 E-value=9.2e-23 Score=131.93 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=88.8
Q ss_pred ceEEeCCCcccc-----hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCC--cc
Q psy785 2 LEILDTAGTEQF-----TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEE--ER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~--~~ 73 (112)
+++|||||++++ ...+..+++++|++++|+|++++.+++.+..|...+..... ..++|+++|+||+|+.+ .+
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r 133 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR 133 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhh
Confidence 689999999998 67888899999999999999999999988777554443221 25799999999999976 33
Q ss_pred c----ccHHHHHHHHHHhC---CcEEEeecCCCCChhHHhhhhcc
Q psy785 74 V----VGKEQGASLARAFA---CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. ...+++.++++.+| ++++++||++ .++.++|..+++
T Consensus 134 ~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 134 EELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHH
Confidence 3 44567778888887 7999999999 889999887653
No 107
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.88 E-value=1.7e-22 Score=130.39 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=87.8
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 79 (112)
++++||| +++|+.+++.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+.+.+ ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HH
Confidence 3689999 8999999999999999999999999987 78888999987765 46899999999999754432 34
Q ss_pred HHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+++..++ +++++|||++|.|++++|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 136 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 566777777 89999999999999999987653
No 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=2.8e-23 Score=136.82 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=84.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----------QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++||||||+++...|..++++++++++|+|+++ ..+++....|+..+.......++|+++++||+|+.+
T Consensus 203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence 7899999999999999999999999999999999 678998888998887754446799999999999853
Q ss_pred cc----------------cccHHHHHHHHH-----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ER----------------VVGKEQGASLAR-----------AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+ ..+.+++..++. ..++.+++|||+++.||.++|.++.+
T Consensus 283 ~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 283 EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 22 245666666652 34578899999999999999998753
No 109
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.87 E-value=2.4e-23 Score=135.35 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=90.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++++|||+||++++.+|..++++++++++|+|++ +..+++....|+..+.......++|+++++||+|+.
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~ 247 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred eeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh
Confidence 3789999999999999999999999999999664 566788777888888776544679999999999986
Q ss_pred Ccc----------------cccHHHHHHHHH----------HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EER----------------VVGKEQGASLAR----------AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+ ..+.+++.+++. ..++.+++|||+++.||.++|..+.+
T Consensus 248 ~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 248 EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp HHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 433 356667776643 23567899999999999999988753
No 110
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.87 E-value=2e-21 Score=119.38 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=77.0
Q ss_pred ceEEeCCCcccchh-hHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhh-c-CCCCCcEEEEeeCCCCCCcccccH
Q psy785 2 LEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRV-K-DTDDVPMVLVGNKCDLEEERVVGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~-~-~~~~~p~ivv~nK~D~~~~~~~~~ 77 (112)
+++|||||++++.. ++..+++++|++++|+|+++.. ++.....|+..+... . ...++|+++|+||+|+.+......
T Consensus 56 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 135 (214)
T 2fh5_B 56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL 135 (214)
T ss_dssp EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH
T ss_pred EEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHH
Confidence 78999999999987 8889999999999999999854 455555544443322 1 224689999999999975433111
Q ss_pred --HHHHHHHH---------------------------------Hh--CCcEEEeecCCC------CChhHHhhhhcc
Q psy785 78 --EQGASLAR---------------------------------AF--ACTFLETSAKAK------VNSWLCVECTND 111 (112)
Q Consensus 78 --~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~v~~~~~~l~~ 111 (112)
+...+... .+ ++++++|||++| .||+++|+++.+
T Consensus 136 ~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 136 IQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 11111111 11 557999999999 999999999864
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=4.2e-22 Score=118.26 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=80.0
Q ss_pred ceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||++++. .+.+.+++ +++++++++|.++.++ ...|+..+.+ .+.|+++|+||+|+...+
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~ 124 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSL 124 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHT
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhcccc
Confidence 6899999999874 44566665 8999999999988653 3457766655 368999999999986443
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.. ...++++.++++++++||++|.|++++|+++.+
T Consensus 125 ~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~ 161 (165)
T 2wji_A 125 GIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISI 161 (165)
T ss_dssp TCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred Chhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3332 356777888999999999999999999998764
No 112
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.86 E-value=1.1e-20 Score=115.11 Aligned_cols=109 Identities=27% Similarity=0.418 Sum_probs=95.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..++++++++++|+|+++..+++.+..|+..+.... ..+.|+++++||+|+.+.+......++
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~ 134 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEAR 134 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHH
Confidence 5789999999998888889999999999999999999998888988776542 246899999999999766666677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...++.++++||+++.|++++|+.+.+
T Consensus 135 ~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 135 AFAEKNNLSFIETSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998763
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=4.1e-22 Score=130.02 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=88.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT----------AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+++|||+||++++.+|..++++++++++|+|++ +..+++....|+..+.......++|+++++||+|+.+
T Consensus 163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 789999999999999999999999999999998 6778888888888888765556799999999999853
Q ss_pred cc---------------cccHHHHHHHHH-Hh--------------------------CCcEEEeecCCCCChhHHhhhh
Q psy785 72 ER---------------VVGKEQGASLAR-AF--------------------------ACTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 72 ~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~Sa~~~~~v~~~~~~l 109 (112)
.+ ....+++.+++. .+ ++.+++|||+++.||..+|..+
T Consensus 243 eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v 322 (340)
T 4fid_A 243 EKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLA 322 (340)
T ss_dssp HHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHH
T ss_pred hhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHH
Confidence 21 113445544432 22 3678999999999999999876
Q ss_pred cc
Q psy785 110 ND 111 (112)
Q Consensus 110 ~~ 111 (112)
.+
T Consensus 323 ~~ 324 (340)
T 4fid_A 323 VD 324 (340)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 114
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=1.3e-20 Score=117.08 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=78.8
Q ss_pred ceEEeCCCc------ccc---hhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGT------EQF---TAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~------~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+ ++. ...+..++..+|++++|+|++++.+++ ....|+..+... ..+.|+++|+||+|+.
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKC 155 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGC
T ss_pred EEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccC
Confidence 689999998 442 122344578899999999999987764 233566665542 1478999999999997
Q ss_pred CcccccHH---HHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKE---QGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+.+... ...+++...+ ++++++||++|.|++++|+++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (228)
T 2qu8_A 156 NMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACE 201 (228)
T ss_dssp C--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHH
Confidence 65555443 3455666666 79999999999999999998764
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.84 E-value=2.9e-21 Score=116.37 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=82.4
Q ss_pred CceEEeCCC-----------cccchhhHHhhccc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhcCCCCCc
Q psy785 1 MLEILDTAG-----------TEQFTAMRDLYMKN-GQGFILVYSITAQSTFNDL-SDLREQ--------ILRVKDTDDVP 59 (112)
Q Consensus 1 ~~~i~Dt~g-----------~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p 59 (112)
.+.+||||| ++++..++..++++ ++++++++++.+..++..+ ..|... +.......++|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 368999999 77888888888887 7777777777777777765 566542 22222225789
Q ss_pred EEEEeeCCCCCCcccccHHHHHHHHHHhCCc-------EEEeecCCCCChhHHhhhhcc
Q psy785 60 MVLVGNKCDLEEERVVGKEQGASLARAFACT-------FLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 60 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++|+||+|+.+.. .+...++++.++.+ ++++||++|.|++++|+++.+
T Consensus 125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence 99999999997543 45667778877764 799999999999999998864
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.83 E-value=5.8e-21 Score=131.22 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=86.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||++.+..++..+++++|++++|+|+++. +.+..|+..+.... .+.|+++|+||+|+.+.+.+..+...
T Consensus 100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~ 174 (535)
T 3dpu_A 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKIN 174 (535)
T ss_dssp EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHH
Confidence 78999999999999999999999999999999865 44567888887764 46899999999999876777777788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+...+.+++++||++|.|++++++.+.+
T Consensus 175 ~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 175 ERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp HHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred HHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 888888999999999999999999998763
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=3.3e-20 Score=120.03 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=86.3
Q ss_pred ceEEeCCCcccch----------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFT----------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.||||||+.++. ..+..+++++|++++|+|+++..+.+....|+..+.. .++|+++|+||+|+..
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIG 136 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSS
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCC
Confidence 6899999986543 5667788999999999999998888877777777665 4689999999999974
Q ss_pred cccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 72 ERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.........+...++ .+++++||++|.|++++|+.+.+
T Consensus 137 ~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~ 178 (308)
T 3iev_A 137 PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILK 178 (308)
T ss_dssp SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 44445666677777765 68999999999999999998753
No 118
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.82 E-value=1e-19 Score=110.34 Aligned_cols=109 Identities=28% Similarity=0.436 Sum_probs=94.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+++|||+|++++..++..++++++++++|+|.++..+++.+..|+..+.... ....|+++++||+|+.+.+......++
T Consensus 80 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~ 158 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEAR 158 (191)
T ss_dssp EEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHH
Confidence 4679999999998888999999999999999999999988888988776542 246899999999999765666677788
Q ss_pred HHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++...++.++++||+++.|++++|+.+.+
T Consensus 159 ~l~~~~~~~~ld~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 159 AFAEKNGLSFIETSALDSTNVEAAFQTILT 188 (191)
T ss_dssp HHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 888888999999999999999999998764
No 119
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.9e-20 Score=112.81 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=80.6
Q ss_pred ceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||++++. .++..++. +++++++++|.++ ++....|+..+.. .+.|+++|+||+|+...+
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~ 128 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSL 128 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHT
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccc
Confidence 6899999999874 45666665 4999999999875 4555667777665 468999999999986544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+. ....++++.++++++++||++|.|++++|+++.+
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 165 (188)
T 2wjg_A 129 GIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISI 165 (188)
T ss_dssp TCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHH
T ss_pred cch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHH
Confidence 333 3456777888999999999999999999998763
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.82 E-value=4.5e-20 Score=111.68 Aligned_cols=105 Identities=13% Similarity=0.209 Sum_probs=77.7
Q ss_pred CceEEeCCC----------cccchhhHHhhcccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 1 MLEILDTAG----------TEQFTAMRDLYMKNG---QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 1 ~~~i~Dt~g----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
.+.+||||| ++.+..++..+++++ |++++|+|++++.+..... +...+.. .+.|+++|+||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~ 144 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKA 144 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECG
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECc
Confidence 368999999 788888888888877 9999999999877665532 1222222 568999999999
Q ss_pred CCCCcccccHHHHHHHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 68 DLEEERVVGKEQGASLAR----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 68 D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|+.+.+.... ...+..+ ..+.+++++||++|.|++++|+++.+
T Consensus 145 Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 145 DKIPKGKWDK-HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191 (195)
T ss_dssp GGSCGGGHHH-HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccCChHHHHH-HHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHH
Confidence 9976544321 2222222 23569999999999999999998864
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=2.8e-20 Score=118.56 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=81.0
Q ss_pred CceEEeCCCcccch------hhHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTEQFT------AMRDLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.+++|||||++++. .+.+.++. ++|++++|+|+++.++. ..|...+.+ .++|+++++||+|+.+.
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDG 122 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCc
Confidence 37899999999875 45666765 69999999999886543 346555554 46899999999998654
Q ss_pred ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+. .....+++.++++++++||++|.|++++|+++.+
T Consensus 123 ~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 160 (272)
T 3b1v_A 123 QGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAH 160 (272)
T ss_dssp TTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHH
Confidence 4333 3456777888999999999999999999998764
No 122
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.81 E-value=4.7e-20 Score=110.06 Aligned_cols=99 Identities=25% Similarity=0.251 Sum_probs=73.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.+|||||++++..++..+++++|++++|+|++++ .+++.+ ..+.. .++|+++|+||+|+.+.. .+
T Consensus 57 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~----~~~p~ilv~nK~Dl~~~~---~~ 125 (178)
T 2lkc_A 57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA----ANVPIIVAINKMDKPEAN---PD 125 (178)
T ss_dssp EEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG----GSCCEEEEEETTTSSCSC---HH
T ss_pred EEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh----CCCCEEEEEECccCCcCC---HH
Confidence 67999999999998888899999999999999884 344322 22222 468999999999997531 22
Q ss_pred HHHHHHHHh-------C--CcEEEeecCCCCChhHHhhhhcc
Q psy785 79 QGASLARAF-------A--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 79 ~~~~~~~~~-------~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
......... + ++++++||++|.|++++|+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 167 (178)
T 2lkc_A 126 RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILL 167 (178)
T ss_dssp HHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHH
Confidence 222222222 2 48999999999999999998864
No 123
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.81 E-value=2.5e-20 Score=109.59 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=73.9
Q ss_pred ceEEeCCCccc-------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQ-------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+.+|||||++. +...+..+++++|++++++|.++..+... .|+...... .+.|+++|+||+|+.+..
T Consensus 51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~- 124 (161)
T 2dyk_A 51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE- 124 (161)
T ss_dssp EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG-
T ss_pred EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch-
Confidence 67999999887 34566778899999999999988543322 222222222 458999999999997542
Q ss_pred ccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 75 VGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...+++ +.++ +++++||++|.|++++|+++.+
T Consensus 125 ---~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 125 ---LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp ---GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred ---HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHH
Confidence 2223344 5677 8999999999999999998864
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=2.6e-20 Score=114.71 Aligned_cols=101 Identities=15% Similarity=0.232 Sum_probs=74.7
Q ss_pred CceEEeCCCcccchhhHHhhccc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKN----GQGFILVYSIT-AQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~ 72 (112)
.+.+|||||++++...+..++++ +|++++|+|++ ++.++.....|+..+..... ..++|+++|+||+|+.+.
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 37899999999998888888887 99999999999 88899988889888876532 257999999999999765
Q ss_pred cccc------HHHHHHHHHHhCCcEEEeecCCCCC
Q psy785 73 RVVG------KEQGASLARAFACTFLETSAKAKVN 101 (112)
Q Consensus 73 ~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~ 101 (112)
.... .++...++...+.+++++||++|.+
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 136 RPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 5433 3345556666677889999998764
No 125
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.80 E-value=1.2e-19 Score=114.85 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=79.4
Q ss_pred ceEEeCCCcccchh------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||+..+.. +.+.++ .++|++++|+|.++.++.. .|...+.+ .++|+++++||+|+.+.+
T Consensus 54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKT 126 (258)
T ss_dssp EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHT
T ss_pred EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCcc
Confidence 68999999987754 335555 5899999999999876443 35555554 468999999999986544
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+. ....++++.++++++++||++|.|++++|+++.+
T Consensus 127 ~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 127 GMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp TCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred chH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence 433 2356778888999999999999999999998753
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=3.7e-20 Score=117.10 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=77.9
Q ss_pred ceEEeCCCcccchh----------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTA----------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+.+|||||+..+.. +.+.++ +++|++++|+|+++.++...+..| +.+ .++|+++|+||+|+
T Consensus 50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl 122 (256)
T 3iby_A 50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDI 122 (256)
T ss_dssp EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHH
T ss_pred EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhc
Confidence 68999999987753 556666 899999999999987655443333 332 46899999999998
Q ss_pred CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+... .....+.+.++++++++||++|.|++++|+++.+
T Consensus 123 ~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 123 AEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp HHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHT
T ss_pred CCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 6433321 1234577778999999999999999999999864
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=3.4e-19 Score=120.51 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=80.9
Q ss_pred ceEEeCCC----------cccchhhHHh-hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAG----------TEQFTAMRDL-YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g----------~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++||||| +++|..++.. +++++|++++|+|+++..+.. ...|...+.. .++|+++|+||+|+.
T Consensus 245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGS
T ss_pred EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcC
Confidence 68999999 7888776654 789999999999998754322 2345555544 568999999999998
Q ss_pred CcccccHHHHHHHHHHh-----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAF-----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+....++..+.+++. +.+++++||++|.|++++|+.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 320 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp CCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 66655556666665554 469999999999999999998753
No 128
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=1.3e-20 Score=112.65 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=74.6
Q ss_pred ceEEeCCCcccchh------h--HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA------M--RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~------~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+++|||||++++.. + ...+++++|++++|+|++++.+++. ..|+..+.+.. ..++|+++|+||+|+.+..
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~ 131 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGET 131 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcch
Confidence 58999999875321 1 1235889999999999998887653 46777766543 2468999999999985421
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. .++...+.+++++||++|.|++++|+++.+
T Consensus 132 ~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 132 L-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp C-------EEEEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred h-------hhhhccCCceEEEeCCCCCCHHHHHHHHHH
Confidence 1 111224668999999999999999998864
No 129
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=6.4e-19 Score=106.36 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=75.9
Q ss_pred ceEEeCCC----------cccchhhHHhhcccC---CEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAG----------TEQFTAMRDLYMKNG---QGFILVYSITAQSTF--NDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+.+||||| ++.+..++..+++++ +++++|+|.++..+. ..+..|+.. .+.|+++|+||
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK 142 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTK 142 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEEC
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEC
Confidence 67999999 777888888888776 999999998775433 333334332 25899999999
Q ss_pred CCCCCccc--ccHHHHHHHHHHhC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 67 CDLEEERV--VGKEQGASLARAFA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 67 ~D~~~~~~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|+.+... ...+...+++...+ ++++++||++|.|++++|+++.+
T Consensus 143 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 143 MDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 99975332 22334445555433 69999999999999999999864
No 130
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=2.5e-19 Score=114.30 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=76.2
Q ss_pred ceEEeCCCcccch----------hhHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFT----------AMRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+.+|||||+.++. ...+.++ +++|++++|+|.++.+....+ ...+.+ .++|+++|+||+|+
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~----~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLE----LGIPCIVALNMLDI 124 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHH----HTCCEEEEEECHHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHh----cCCCEEEEEECccc
Confidence 6799999988765 2233343 799999999999986655443 333443 25899999999998
Q ss_pred CCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 70 EEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.+... .....+.+.++++++++||++|.|++++++++.+
T Consensus 125 ~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 125 AEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp HHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 6433321 2245677788999999999999999999998864
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=2.8e-18 Score=114.48 Aligned_cols=107 Identities=17% Similarity=0.106 Sum_probs=80.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc--HHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG--KEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~ 79 (112)
+.+|||||+++|...+...++++|++++|+|+++..+......|+..+... ...|+++++||+|+.+..... .++
T Consensus 77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~ 153 (403)
T 3sjy_A 77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQ 153 (403)
T ss_dssp EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHH
Confidence 679999999999999999999999999999999876666666676655443 235899999999997533211 112
Q ss_pred HHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++.... +++++++||++|.|++++++.+.+
T Consensus 154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence 22222221 568999999999999999998753
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=7.3e-19 Score=118.33 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=78.7
Q ss_pred ceEEeCCCc----------ccchhhHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGT----------EQFTAMRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|||||+ ++|..+.. .+++++|++++|+|++++.+.+.. .|...+.. .++|+++|+||+|+.
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGS
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCC
Confidence 689999998 55655544 478999999999999998887765 46666654 568999999999997
Q ss_pred CcccccHHHHHH-HHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785 71 EERVVGKEQGAS-LARA----FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 71 ~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+.+....++..+ +.+. .+.+++++||++|.|++++|+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~ 344 (436)
T 2hjg_A 300 DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAII 344 (436)
T ss_dssp CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHH
Confidence 654433333322 2222 256999999999999999998765
No 133
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.77 E-value=1.7e-18 Score=106.78 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=73.7
Q ss_pred CceEEeCCC----------cccchhhHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 1 MLEILDTAG----------TEQFTAMRDLYMKN---GQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 1 ~~~i~Dt~g----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
.+.|||||| ++.+..++..++++ +|++++|+|.++..+.. ...|+..+.. .++|+++|+||+
T Consensus 80 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~ 154 (223)
T 4dhe_A 80 VAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKC 154 (223)
T ss_dssp SEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECG
T ss_pred cEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEecc
Confidence 368999999 45566677777766 78899999998753322 2334444443 468999999999
Q ss_pred CCCCccccc--HHHHHHHHHH-------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 68 DLEEERVVG--KEQGASLARA-------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 68 D~~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
|+.+..... .....+.... .+.+++++||++|.|++++|+++.+
T Consensus 155 Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 207 (223)
T 4dhe_A 155 DKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIES 207 (223)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence 997543321 1222222232 3458999999999999999998863
No 134
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.76 E-value=6.8e-18 Score=117.14 Aligned_cols=103 Identities=20% Similarity=0.179 Sum_probs=83.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||+++|...+...++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.+.. ......
T Consensus 73 l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ 145 (599)
T 3cb4_D 73 LNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAE 145 (599)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHH
Confidence 6899999999999999999999999999999998777777777765543 458999999999997532 233345
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++...+++ +++++||++|.|++++++.+.+
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~ 178 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVR 178 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhh
Confidence 56666666 5999999999999999998753
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.76 E-value=1.9e-18 Score=111.59 Aligned_cols=98 Identities=21% Similarity=0.075 Sum_probs=81.2
Q ss_pred cccchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHHHHHHHHh
Q psy785 10 TEQFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQGASLARAF 87 (112)
Q Consensus 10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~ 87 (112)
+++++.+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+...+. .+....+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 7888889999999999999999999886 88888999887665 569999999999997543222 33445566667
Q ss_pred CCcEEEeecCCCCChhHHhhhhcc
Q psy785 88 ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 88 ~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+++++++||++|.|++++++.+..
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHhhccC
Confidence 899999999999999999987653
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=5.7e-19 Score=118.34 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=79.0
Q ss_pred ceEEeCCCcccchhh-------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFTAM-------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~ 74 (112)
+.+|||||++++..+ ...+++++|++++|+|++... ....|+..+.+ .++|+++|+||+|+.+...
T Consensus 85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCC
T ss_pred EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccH
Confidence 689999999877543 455788999999999984332 33457776666 3689999999999976544
Q ss_pred ccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 75 VGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
. +...++++.++++++++||++|.|++++|+.+.+
T Consensus 158 ~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 158 E--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp T--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred H--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3 4455566667889999999999999999998764
No 137
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.75 E-value=1.2e-17 Score=115.94 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=83.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
++||||||+++|...+...++.+|++++|+|+++..+.+....|..... .++|+++++||+|+.... ......
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~ 147 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKK 147 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHHH
Confidence 6799999999999888889999999999999999877777777765442 468999999999996532 123344
Q ss_pred HHHHHhCC---cEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAFAC---TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~~~---~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++...+++ +++++||++|.|++++++.+.+
T Consensus 148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~ 180 (600)
T 2ywe_A 148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIVN 180 (600)
T ss_dssp HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHhhCCCcccEEEEEeecCCCchHHHHHHHH
Confidence 55555666 5999999999999999998753
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.75 E-value=4.4e-18 Score=115.54 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=66.6
Q ss_pred ceEEeCCCcccchhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||++++...+ ..+++++|++++|+|.+++.+++.+..+...+... .++|+++|+||+|+.+..
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANA 359 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTT
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCcc
Confidence 6899999998766443 33688999999999999987765332222222222 268999999999997644
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ..++......+++++||++|.|++++++++.+
T Consensus 360 ~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 360 DAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp HHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTH
T ss_pred chh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHH
Confidence 331 13333332368999999999999999998864
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=1.6e-17 Score=109.36 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=81.8
Q ss_pred ceEEeCCCcccch---------hhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFT---------AMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.... .........+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 6899999975431 12223456799999999998876 67777888888876542 68999999999997
Q ss_pred CcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+...+ +....++...+++++++||++|.|++++++++.+
T Consensus 294 ~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 294 DEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp CHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred ChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 54332 3455566677889999999999999999998764
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=2.4e-18 Score=112.71 Aligned_cols=106 Identities=12% Similarity=0.215 Sum_probs=82.6
Q ss_pred ceEEeCCCccc----chhhHHhh---cccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ----FTAMRDLY---MKNGQGFILVYSITA---QSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~----~~~~~~~~---~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.. +..+...+ +++++++++|+|+++ .++++.+..|..++..+.. ...+|+++|+||+|+.
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 68999999643 33344444 456999999999998 7889999899999887643 2579999999999986
Q ss_pred CcccccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.. +...++.+.++ .+++++||+++.|++++++++.+
T Consensus 288 ~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 288 EAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp THH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred CCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence 422 33455666665 68999999999999999998763
No 141
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=2.7e-18 Score=109.26 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=77.8
Q ss_pred ceEEeCCCcccchh------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||+..+.. ..+.++ .++|++++|+|.++.+. ...|...+.+. ...|+++++||+|+.+.+
T Consensus 52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM---EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT---TCCSEEEEEECHHHHHHH
T ss_pred EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc---CCCCEEEEEEChhcCccc
Confidence 68999999988765 566666 68999999999987642 23344444442 238999999999986433
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.... ....+.+.++++++++||++|.|+.++++.+.+
T Consensus 126 ~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~ 162 (271)
T 3k53_A 126 GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIAL 162 (271)
T ss_dssp TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3222 256677788999999999999999999998753
No 142
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=1.3e-17 Score=107.58 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=73.5
Q ss_pred ceEEeCCCccc--------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQ--------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLR-EQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.||||||+.+ +......+++++|++++|+|++++.+.. ..|+ ..+.+.. .+.|+++|+||+|+.+.
T Consensus 57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGGCSS
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECcccCCc
Confidence 68999999876 4556677899999999999998764433 2444 3444321 36899999999998653
Q ss_pred ccccHHHHHHHHHH-hC-CcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARA-FA-CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~-~~-~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ....... .+ .+++++||++|.|++++++.+.+
T Consensus 133 ~~~----~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 133 PEE----AMKAYHELLPEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp HHH----HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred hHH----HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 320 1222222 23 37899999999999999998864
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=4e-17 Score=109.11 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=70.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc--c
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV--V 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~--~ 75 (112)
+.||||||+++|...+...+..+|++++|+|+++ +.+.+.+..| ... ...|+++++||+|+.+... .
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTTTTTT
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHHHHHH
Confidence 6899999999998877777888999999999985 4445444322 221 2258999999999975432 2
Q ss_pred cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..++... .+++++++||++|.|++++++.+.+
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 23444555544 2569999999999999999998753
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=9.2e-17 Score=109.23 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=73.8
Q ss_pred ceEEeCCCcc-cch--------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTE-QFT--------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~-~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.+|||||++ .+. .....+++++|++++|+|++++.+++... ++..+ .++|+++|+||+|+.+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc
Confidence 6899999988 553 23456789999999999999887776543 22222 35899999999999642
Q ss_pred ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
...++..++.. .+.+++++||++|.|++++++++.+
T Consensus 366 --~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 366 --INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp --CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred --cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33333333322 3468999999999999999998764
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.70 E-value=2e-16 Score=108.59 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=53.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.||||||+++|...+..+++.+|++++|+|+++..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence 689999999999999999999999999999999876666655453 3332 4689999999999864
No 146
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.70 E-value=1.9e-17 Score=111.45 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=75.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCC-cEEEEeeCCCCCCcc----
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD---TDDV-PMVLVGNKCDLEEER---- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~-p~ivv~nK~D~~~~~---- 73 (112)
+.||||||+++|...+...++.+|++++|+|+++ .+++....|.....++.. ..++ |+++++||+|+.+..
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 6899999999999888889999999999999998 667654443333322211 1234 689999999997521
Q ss_pred --cccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHhh
Q psy785 74 --VVGKEQGASLARAFA-----CTFLETSAKAKVNSWLCVE 107 (112)
Q Consensus 74 --~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 107 (112)
....++..+++...+ ++++++||++|.|+.+++.
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112344555666655 6799999999999986543
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.69 E-value=2.9e-17 Score=111.79 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=67.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-----LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 76 (112)
+.||||||+++|...+...++++|++++|+|+++..+... ...+...+.... ...|+++++||+|+.+.....
T Consensus 113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHH
T ss_pred EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHH
Confidence 6899999999999999999999999999999988643221 111111122211 225699999999997533222
Q ss_pred HHH----HHHHHHHh-----CCcEEEeecCCCCChhHH
Q psy785 77 KEQ----GASLARAF-----ACTFLETSAKAKVNSWLC 105 (112)
Q Consensus 77 ~~~----~~~~~~~~-----~~~~~~~Sa~~~~~v~~~ 105 (112)
.++ ...+.... +++++++||++|.|+.++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 222 23333333 357899999999999864
No 148
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.5e-16 Score=107.09 Aligned_cols=102 Identities=21% Similarity=0.046 Sum_probs=73.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEeeCCCCCCccc--c--c
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-PMVLVGNKCDLEEERV--V--G 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p~ivv~nK~D~~~~~~--~--~ 76 (112)
+.||||||+++|...+...++++|++++|+|+++....+ ...++..+.. .+. |+++++||+|+.+... . .
T Consensus 106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~----~~~~~iIvviNK~Dl~~~~~~~~~~i 180 (434)
T 1zun_B 106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL----LGIKHIVVAINKMDLNGFDERVFESI 180 (434)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEEcCcCCcccHHHHHHH
Confidence 689999999999888888899999999999998754322 2334333333 234 6899999999975211 1 1
Q ss_pred HHHHHHHHHHhC-----CcEEEeecCCCCChhHHhhh
Q psy785 77 KEQGASLARAFA-----CTFLETSAKAKVNSWLCVEC 108 (112)
Q Consensus 77 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~ 108 (112)
..+..++++..+ ++++++||++|.|+.++++.
T Consensus 181 ~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 181 KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 234455666666 68999999999999886543
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.69 E-value=1e-16 Score=107.15 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=74.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA----QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV-- 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~-- 75 (112)
+.||||||+++|.......+..+|++++|+|+++ +.+.+.+..| ... ...|+++++||+|+.+....
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHHHHHH
Confidence 6899999999998777777889999999999985 3444444322 221 22589999999999753321
Q ss_pred cHHHHHHHHHH---hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKEQGASLARA---FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..++..++... .+++++++||++|.|++++++.+.+
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~ 196 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED 196 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 12233344433 2569999999999999999998753
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.69 E-value=1.5e-16 Score=108.30 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=76.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--c
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--G 76 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 76 (112)
+.+|||||+++|...+...++++|++++|+|+++ +.+.+.+. .+.. .++|.++++||+|+.+.... .
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~ 146 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRT 146 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHH
Confidence 6899999999998888889999999999999987 44444332 2222 35888999999999753211 1
Q ss_pred HHHHHHHHHHh----CCcEEEeecCCCCChhHHhhhhcc
Q psy785 77 KEQGASLARAF----ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 77 ~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++..++.... +.+++++||++|.|++++++.+.+
T Consensus 147 ~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 147 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHH
Confidence 23344455444 568999999999999999998754
No 151
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.68 E-value=2.6e-16 Score=109.27 Aligned_cols=101 Identities=21% Similarity=0.119 Sum_probs=73.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc---
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--- 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--- 75 (112)
++||||||+++|..++...++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+.+....
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTT
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccC
Confidence 6899999999999988888999999999999998 666654432 222 46899999999998642110
Q ss_pred ----------cH---HH-------HHHHHHHhC---------------CcEEEeecCCCCChhHHhhhhc
Q psy785 76 ----------GK---EQ-------GASLARAFA---------------CTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 76 ----------~~---~~-------~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.. +. ......+.+ ++++++||++|.|+.++++++.
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 00 00 011111112 2799999999999999999875
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.68 E-value=8.4e-17 Score=106.39 Aligned_cols=103 Identities=5% Similarity=-0.103 Sum_probs=74.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEee-CCCCCCcccccH--
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGN-KCDLEEERVVGK-- 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~-- 77 (112)
+.||||||+++|.......++.+|++++|+| +. ........|+..+.. .++|. ++++| |+|+ +......
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~ 134 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELK 134 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHH
Confidence 6899999999998777778899999999999 43 334444555555443 35777 88999 9999 4332211
Q ss_pred HHHHHHHHHh---CCcEEE--eecCC---CCChhHHhhhhcc
Q psy785 78 EQGASLARAF---ACTFLE--TSAKA---KVNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~---~~~~~~--~Sa~~---~~~v~~~~~~l~~ 111 (112)
++..++.+.. .+++++ +||++ +.|++++++.+.+
T Consensus 135 ~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~ 176 (370)
T 2elf_A 135 AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINE 176 (370)
T ss_dssp HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence 3344444433 368999 99999 9999999988753
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=1.8e-16 Score=106.80 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=71.2
Q ss_pred ceEEeCCCccc---------chhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ---------FTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|||||++. +...+..+++++|++++|+|.++..+.. .+..|+.. .++|+++|+||+|+.
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENL 123 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSH
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCc
Confidence 68999999774 2445677899999999999998754433 23334322 358999999999985
Q ss_pred CcccccHHHH-HHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVGKEQG-ASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+. . .... .++. .+++ +++++||++|.|+.++++++.+
T Consensus 124 ~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 162 (439)
T 1mky_A 124 RE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIK 162 (439)
T ss_dssp HH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred cc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence 31 1 1222 3333 4577 7999999999999999998753
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.67 E-value=1.5e-16 Score=106.21 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=70.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc---cH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV---GK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~ 77 (112)
+.||||||+++|...+...++++|++++|+|+++....+ ...|+..+.. .++| +++++||+|+.+.... ..
T Consensus 77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~ 151 (405)
T 2c78_A 77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVE 151 (405)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHH
Confidence 689999999999888888899999999999998764333 3445544443 3578 8899999999742211 12
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCCC
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKVN 101 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~ 101 (112)
.+..++....+ .+++++||++|.|
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 24455566555 5899999999987
No 155
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=96.49 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=66.6
Q ss_pred CCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHH---HHhhcC-CCCCcEEEEeeCC-CCCCcccccHHHHH
Q psy785 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQ---ILRVKD-TDDVPMVLVGNKC-DLEEERVVGKEQGA 81 (112)
Q Consensus 7 t~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~ 81 (112)
.+||++++.+|+.|++++|++|+|+|.++.+-++ .+.-+.+ +..... ..+.|++|++||. |++. ..+..++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3489999999999999999999999999875433 2222222 222221 2578999999995 7753 33444333
Q ss_pred HHHH----HhCCcEEEeecCCCCChhHHhhhhccC
Q psy785 82 SLAR----AFACTFLETSAKAKVNSWLCVECTNDQ 112 (112)
Q Consensus 82 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 112 (112)
+... ...+.++.|||++|.|+.+.++||.++
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~ 220 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEE 220 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence 2211 235689999999999999999999763
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.66 E-value=2.5e-16 Score=104.97 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=75.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccc---ccH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERV---VGK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~ 77 (112)
+.||||||+++|...+...++.+|++++|+|+++....+....| ..+.. .++| +++++||+|+.+... ...
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~ 142 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVE 142 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHH
Confidence 68999999999988888889999999999999885433333333 33332 3578 689999999974221 112
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCCCC----------hhHHhhhhc
Q psy785 78 EQGASLARAFA-----CTFLETSAKAKVN----------SWLCVECTN 110 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~~~----------v~~~~~~l~ 110 (112)
.+..++.+..+ ++++++||++|.| +.++++.+.
T Consensus 143 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~ 190 (397)
T 1d2e_A 143 LEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVD 190 (397)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHH
Confidence 34555666655 5899999999764 788888764
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=5.1e-16 Score=104.66 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=70.5
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST---FN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER 73 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~ 73 (112)
++.||||||+++|...+...++++|++++|+|+++... ++ .....+..+.. .++| +++++||+|+....
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccc
Confidence 37899999999999888889999999999999987531 11 11112222222 3466 89999999985311
Q ss_pred ------cccHHHHHHHHHHhC------CcEEEeecCCCCChhHHhh
Q psy785 74 ------VVGKEQGASLARAFA------CTFLETSAKAKVNSWLCVE 107 (112)
Q Consensus 74 ------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 107 (112)
....++...+.+..+ ++++++||++|.|+.++.+
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 111223334444444 4799999999999998554
No 158
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=9.5e-17 Score=108.08 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=68.1
Q ss_pred CceEEeCCCcc--------cchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTE--------QFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.+++|||||++ .+...+..+++++|++++|+|+.+..+..+ .|+..+.+ ..++|+++|+||+|+.+.
T Consensus 52 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 52 DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC---
T ss_pred eEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCccc
Confidence 37899999986 566677888999999999999987655443 33333333 256899999999998643
Q ss_pred ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ..++. ..++ +++++||++|.|+.++++++.+
T Consensus 127 ~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~ 161 (436)
T 2hjg_A 127 RAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAE 161 (436)
T ss_dssp --C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHH
T ss_pred hhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHH
Confidence 211 11122 3466 8999999999999999998764
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.65 E-value=2.1e-17 Score=113.48 Aligned_cols=105 Identities=25% Similarity=0.260 Sum_probs=75.3
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc-ccHHH
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV-VGKEQ 79 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~ 79 (112)
.+.||||||+++|..++...++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.+... .....
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~ 127 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKE 127 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSH
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHH
Confidence 378999999999999999999999999999999886544443333 22222 4689999999999864221 11111
Q ss_pred HHHH---HHHh--CCcEEEeecCCCCChhHHhhhhc
Q psy785 80 GASL---ARAF--ACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 80 ~~~~---~~~~--~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.... +..+ .++++++||++|.|++++++.+.
T Consensus 128 l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 128 LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 1111 1112 24899999999999999999875
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=2.1e-16 Score=107.05 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=63.8
Q ss_pred ceEEeCCCcccchhhHH--------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTAMRD--------LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||+.++...+. .+++++|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+.+..
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQ 346 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGG
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcch
Confidence 67999999876544333 35789999999999998766544 34544442 36999999999997644
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... ...++. .+.+++++||++|.|++++++++.+
T Consensus 347 ~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 347 LIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp GST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred hhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 332 111111 3568999999999999999998764
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.64 E-value=5e-16 Score=105.18 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=70.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc-c
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFN---DLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE-R 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~-~ 73 (112)
+.||||||+++|...+...++++|++++|+|+++.. +|+ ....++..+.. .++| +++++||+|+.+. .
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCH
Confidence 689999999999988888999999999999998652 221 22222222222 3455 8999999999731 1
Q ss_pred c---ccHHHHHHHHHHhC-----CcEEEeecCCCCChhHHh
Q psy785 74 V---VGKEQGASLARAFA-----CTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 74 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 106 (112)
. ....+...+....+ ++++++||++|.|+.++.
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 1 11233445555555 589999999999987653
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.64 E-value=1.1e-16 Score=108.50 Aligned_cols=104 Identities=19% Similarity=0.149 Sum_probs=61.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcc----
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEER---- 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~---- 73 (112)
+.||||||+++|...+...++.+|++++|+|+++.. +|+....|...+... ...++| +++++||+|+.+..
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~~~~~ 201 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQWSEE 201 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCccccHH
Confidence 689999999999888888899999999999998752 332111122221111 114577 99999999995311
Q ss_pred --cccHHHHHHHHHHh-C------CcEEEeecCCCCChhHHh
Q psy785 74 --VVGKEQGASLARAF-A------CTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 74 --~~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~v~~~~ 106 (112)
.....+...+.... + ++++++||++|.|+.+++
T Consensus 202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123345555555 3 569999999999998876
No 163
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.64 E-value=4.8e-16 Score=100.30 Aligned_cols=104 Identities=18% Similarity=0.101 Sum_probs=72.3
Q ss_pred ceEEeCCCcc-cc--------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTE-QF--------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~-~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.+|||||+. .. .......++.+|++++|+|.++ - .....|+..... ..+.|+++++||+|+...
T Consensus 58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~ 131 (301)
T 1ega_A 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W--TPDDEMVLNKLR---EGKAPVILAVNKVDNVQE 131 (301)
T ss_dssp EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C--CHHHHHHHHHHH---SSSSCEEEEEESTTTCCC
T ss_pred EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C--CHHHHHHHHHHH---hcCCCEEEEEECcccCcc
Confidence 6799999987 32 2223456789999999999976 2 222234333322 246899999999998752
Q ss_pred ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+....+....+...+++ +++++||++|.|++++++.+.+
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHH
Confidence 22223344455555676 7999999999999999998764
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.6e-16 Score=108.96 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=68.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---TF---NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+.||||||+++|...+...++++|++++|+|+++.. ++ ......+..+.. ....|+++|+||+|+.+....
T Consensus 247 ~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 247 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTTCHH
T ss_pred EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccchhHH
Confidence 689999999999998889999999999999998642 11 011111111111 122459999999999753221
Q ss_pred c----HHHHHHHHHHhC-----CcEEEeecCCCCChhHH
Q psy785 76 G----KEQGASLARAFA-----CTFLETSAKAKVNSWLC 105 (112)
Q Consensus 76 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 105 (112)
. ......+....+ ++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 222333444444 58999999999999876
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.63 E-value=5.4e-17 Score=110.64 Aligned_cols=103 Identities=27% Similarity=0.301 Sum_probs=73.1
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc--cc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER--VV 75 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~--~~ 75 (112)
.+.||||||+++|..++...++.+|++++|+|+++ +.+.+.+ ..+.. .++|+++++||+|+.+.. .+
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v 123 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRV 123 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCT
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHH
Confidence 47899999999999888888999999999999987 3344332 22222 468999999999986421 11
Q ss_pred cHH--HHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 76 GKE--QGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 76 ~~~--~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
..+ ....+...++ ++++++||++|.|++++++.+..
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 124 KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 000 0000112222 68999999999999999998763
No 166
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2e-15 Score=91.08 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=61.2
Q ss_pred CceEEeCCCcccchhhHHhhccc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcC---CCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKN----GQGFILVYSIT-AQSTFNDLSDLREQILRVKD---TDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~D~~~~ 72 (112)
.+.+|||||++.+...+..++.+ +|++++|+|++ +..++..+..|+..+..... ..+.|+++|+||+|+.+.
T Consensus 92 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 92 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp TCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred eEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 36899999999987777777765 89999999999 88999998888888765432 257999999999999765
Q ss_pred cc
Q psy785 73 RV 74 (112)
Q Consensus 73 ~~ 74 (112)
..
T Consensus 172 ~~ 173 (193)
T 2ged_A 172 RP 173 (193)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.61 E-value=3.9e-16 Score=100.11 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=71.1
Q ss_pred CceEEeCCCcc-------------cchhhHHhhcccCCEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 1 MLEILDTAGTE-------------QFTAMRDLYMKNGQGFI-LVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 1 ~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
.+.||||||+. .+..++..++++++.++ +|+|.++..+......|...+. ..+.|+++|+||
T Consensus 126 ~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK 201 (299)
T 2aka_B 126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITK 201 (299)
T ss_dssp SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEEC
T ss_pred CceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEc
Confidence 36899999964 34567778888998777 6899987544333333444432 256899999999
Q ss_pred CCCCCcccccHHHHHHHHHH--hCC-cEEEeecCCCCChhHHhhhhc
Q psy785 67 CDLEEERVVGKEQGASLARA--FAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 67 ~D~~~~~~~~~~~~~~~~~~--~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+|+.+......+........ .++ +++++||++|.|++++++++.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence 99975443222222110001 133 688999999999999998864
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.60 E-value=2.2e-15 Score=110.26 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=76.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccc---cH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVV---GK 77 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~ 77 (112)
+.||||||+++|.......++.+|++++|+|+++....+ ...++..+.. .++| +++++||+|+.+.... ..
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~ 435 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVE 435 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHH
Confidence 689999999999888888999999999999998753322 2334444433 3578 7899999999752221 12
Q ss_pred HHHHHHHHHhC-----CcEEEeecCCC--------CChhHHhhhhcc
Q psy785 78 EQGASLARAFA-----CTFLETSAKAK--------VNSWLCVECTND 111 (112)
Q Consensus 78 ~~~~~~~~~~~-----~~~~~~Sa~~~--------~~v~~~~~~l~~ 111 (112)
.+..++....+ ++++++||++| .|+.++++.+.+
T Consensus 436 eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 436 MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 34555666655 58999999999 468888887653
No 169
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.60 E-value=9e-15 Score=98.57 Aligned_cols=104 Identities=20% Similarity=0.118 Sum_probs=69.2
Q ss_pred ceEEeCCCcccchhh------------HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAM------------RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+.+|||||+.++... ...+++.+|++++++|.++..+.+.. .+...+.. .++|+++++||+|+
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDL 304 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGG
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccC
Confidence 579999998543321 13467889999999999876555442 22222222 56899999999999
Q ss_pred CCcccccHHHHHH-HHHH----hCCcEEEeecCCCCChhHHhhhhc
Q psy785 70 EEERVVGKEQGAS-LARA----FACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 70 ~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.+.+....++..+ +.+. .+.+++++||++|.|++++|+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~ 350 (439)
T 1mky_A 305 VVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 350 (439)
T ss_dssp STTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 7644433333322 2222 246899999999999999999875
No 170
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=94.50 Aligned_cols=102 Identities=11% Similarity=-0.005 Sum_probs=70.5
Q ss_pred CCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHH---HHHhhc-CCCCCcEEEEeeC-CCCCCcccccHHHHH
Q psy785 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLRE---QILRVK-DTDDVPMVLVGNK-CDLEEERVVGKEQGA 81 (112)
Q Consensus 7 t~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 81 (112)
.+||++++.+|+.|++++|++|+|+|.++.+.++ ...-+. .+.... ...+.|++|++|| .|+.. ..+..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 4689999999999999999999999999986543 222122 222221 1257899999996 68853 33343333
Q ss_pred HHHH----HhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLAR----AFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+... ...+.+..|||++|.|+.+.++||.+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHH
Confidence 2211 13568999999999999999999874
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=4.8e-14 Score=93.10 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=73.9
Q ss_pred ceEEeCCCcc---------cchhhHHhhcccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTE---------QFTAMRDLYMKNGQGFILVYSITAQS--TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+|||+|.. .+...+ ..+..+|++++|+|++++. +.+.+..|...+... ...+.|+++|+||+|+.
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGC
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCC
Confidence 5799999962 233333 3578999999999998876 555555555544432 33568999999999986
Q ss_pred Cccccc-HHHHHHHHHHh---CCcEEEeecCCCCChhHHhhhhcc
Q psy785 71 EERVVG-KEQGASLARAF---ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..... ......++... +.+++++||+++.|++++++.+.+
T Consensus 306 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 306 NGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence 533100 11222334554 237899999999999999998753
No 172
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.55 E-value=4.5e-14 Score=99.35 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=51.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|||||+++|...+..+++.+|++++|+|+++....... .++..+.. .++|+++++||+|+.
T Consensus 76 ~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 76 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred EEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 68999999999998899999999999999998765443332 34444443 468999999999986
No 173
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=6.7e-15 Score=99.60 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=69.1
Q ss_pred CceEEeCCC--------cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 1 MLEILDTAG--------TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 1 ~~~i~Dt~g--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.+++||||| ++.+...+..+++++|++++|+|..+..+.. ..|+....+. .++|+++|+||+|+.+.
T Consensus 72 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~---~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 72 DFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp CCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT---CCSCEEEEEECC-----
T ss_pred eEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH---cCCCEEEEEECccchhh
Confidence 378999999 7778888888999999999999987643222 2343333332 57899999999998632
Q ss_pred ccccHHHHHHHHHHhCC-cEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGASLARAFAC-TFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.. ...++ ...++ +.+++||++|.|+.++++.+.+
T Consensus 147 ~~----~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~ 181 (456)
T 4dcu_A 147 RA----NIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAE 181 (456)
T ss_dssp --------CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHT
T ss_pred hh----hHHHH-HHcCCCceEEeecccccchHHHHHHHHh
Confidence 21 11111 12344 6789999999999999998754
No 174
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=1.9e-14 Score=90.84 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=67.1
Q ss_pred ceEEeCCCcccch-----------hhHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEee-CCC
Q psy785 2 LEILDTAGTEQFT-----------AMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGN-KCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-----------~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n-K~D 68 (112)
+.||||||+.++. .....+++++|++++|+|+++.... ..+..|+..+... ....|.++++| |+|
T Consensus 73 i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~D 150 (260)
T 2xtp_A 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKED 150 (260)
T ss_dssp EEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGG
T ss_pred EEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccc
Confidence 6899999987642 2233467899999999999863222 2233344333221 11357676666 999
Q ss_pred CCCcccccH-------HHHHHHHHHhCCc---E--EEeecCCCCChhHHhhhhcc
Q psy785 69 LEEERVVGK-------EQGASLARAFACT---F--LETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 69 ~~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+.+. .... ..+..+....+.. + +++||++|.|++++|+.+.+
T Consensus 151 l~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~ 204 (260)
T 2xtp_A 151 LNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIED 204 (260)
T ss_dssp GTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence 9743 2211 2233455554432 2 78999999999999998753
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.50 E-value=1.1e-13 Score=95.13 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=72.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||||+++|...+..+++.+|++++|+|+++...... ..+.......++|+++++||+|+..... .+...
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~~~~~--~~~~~ 156 (529)
T 2h5e_A 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRDIRDP--MELLD 156 (529)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSCCSCH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCccccH--HHHHH
Confidence 6899999999998888889999999999999987543222 2222223335789999999999865332 23344
Q ss_pred HHHHHhCCc-----EEEeecCCCCChhHHhhhh
Q psy785 82 SLARAFACT-----FLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 82 ~~~~~~~~~-----~~~~Sa~~~~~v~~~~~~l 109 (112)
++...++.+ +..+|++++.|+.+++...
T Consensus 157 ~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 157 EVENELKIGCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp HHHHHHCCEEEESEEEESCGGGCCEEEETTTTE
T ss_pred HHHHHhCCCccceecceecccCcceeeehhhhh
Confidence 555666653 3346899999998887643
No 176
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-15 Score=99.94 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=51.8
Q ss_pred ceEEeCCCc-------ccchhhHH-------hhcccCC-------------EEEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy785 2 LEILDTAGT-------EQFTAMRD-------LYMKNGQ-------------GFILVYSITAQSTFNDLS-DLREQILRVK 53 (112)
Q Consensus 2 ~~i~Dt~g~-------~~~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~s~~~~~-~~~~~i~~~~ 53 (112)
+.+|||||+ +.+..++. .++++++ +++++++.+ ..++..+. .|+..+
T Consensus 97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l---- 171 (361)
T 2qag_A 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI---- 171 (361)
T ss_dssp EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----
T ss_pred eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----
Confidence 689999998 66666665 5655443 455555432 23444333 343332
Q ss_pred CCCCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 54 DTDDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 54 ~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..++|+++|+||+|+...+.+.. +.+.+++...+++++++||+++.+ ++.|..+.
T Consensus 172 -~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~ 228 (361)
T 2qag_A 172 -HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQT 228 (361)
T ss_dssp -CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHH
T ss_pred -ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHH
Confidence 25689999999999976554433 345556666788999999999998 66665543
No 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=87.51 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=67.7
Q ss_pred ceEEeCCCc-----------ccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCC
Q psy785 2 LEILDTAGT-----------EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~ 69 (112)
+.+|||||. +.+...+..+++++|++++|+|++.....+ ..|+..+.+.... ...|+++|+||+|+
T Consensus 80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 689999993 344455556678899999999987644321 2233333221111 23699999999998
Q ss_pred CCccccc------HHHHHHHHHHhCCcEEEeecCCC-----CChhHHhhhhc
Q psy785 70 EEERVVG------KEQGASLARAFACTFLETSAKAK-----VNSWLCVECTN 110 (112)
Q Consensus 70 ~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~v~~~~~~l~ 110 (112)
.+...+. .+.++.+.+..+..++.+++..+ .++.++++.+.
T Consensus 158 ~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~ 209 (239)
T 3lxx_A 158 LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQ 209 (239)
T ss_dssp C------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHH
Confidence 6544332 23466777778888887776643 67888887653
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.49 E-value=2.7e-13 Score=95.72 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=54.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 6899999999999999999999999999999998777776666643 333 4689999999999864
No 179
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.48 E-value=5e-14 Score=89.68 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=57.4
Q ss_pred ceEEeCCCcc-------cchhhH-------Hhhcc-------------cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy785 2 LEILDTAGTE-------QFTAMR-------DLYMK-------------NGQGFILVYSITAQSTFNDLSDLREQILRVKD 54 (112)
Q Consensus 2 ~~i~Dt~g~~-------~~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 54 (112)
+.+|||||.. .+..+. ..++. ++|+++++++.+.......-..++..+..
T Consensus 67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--- 143 (274)
T 3t5d_A 67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--- 143 (274)
T ss_dssp EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---
Confidence 6899999973 233333 33333 37899999987653211111223333322
Q ss_pred CCCCcEEEEeeCCCCCCccccc--HHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 55 TDDVPMVLVGNKCDLEEERVVG--KEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 55 ~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+|+++|+||+|+....... .+...+.....+++++++||+++.|+.++++++.+
T Consensus 144 --~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 144 --KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp --TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred --cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence 68999999999986433321 12334445566889999999999999999988754
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.48 E-value=4.7e-16 Score=108.07 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=56.7
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQ----------STFNDLSDLREQILRVKDTDDVP-MVLVGNKCDL 69 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~ 69 (112)
.+.||||||+++|...+...++.+|++++|+|+++. .+.+. +..+.. .++| +++|+||+|+
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~----l~~~~~----lgip~iIvviNKiDl 327 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH----AYLLRA----LGISEIVVSVNKLDL 327 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH----HHHHHH----SSCCCEEEEEECGGG
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH----HHHHHH----cCCCeEEEEEecccc
Confidence 368999999999988777888999999999999753 22222 112222 3455 8999999998
Q ss_pred CCccc-c---cHHHHHHHH-HHhCC-----cEEEeecCCCCChh
Q psy785 70 EEERV-V---GKEQGASLA-RAFAC-----TFLETSAKAKVNSW 103 (112)
Q Consensus 70 ~~~~~-~---~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~ 103 (112)
.+... . ...+...+. ...++ +++++||++|.|+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 64211 1 112233333 33344 79999999999998
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.47 E-value=1.2e-13 Score=97.51 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=73.3
Q ss_pred ceEEeCCCccc---chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQ---FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 78 (112)
+.||||||... ....+..+++++|++++|+|++++.+......|...+.. .+.|+++|+||+|+......+.+
T Consensus 176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTT
T ss_pred eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChh
Confidence 68999999765 345666788999999999999988777666555444332 36789999999998643311110
Q ss_pred ----------HHHHH----HH-H--------hCCcEEEeecC--------------CCCChhHHhhhhc
Q psy785 79 ----------QGASL----AR-A--------FACTFLETSAK--------------AKVNSWLCVECTN 110 (112)
Q Consensus 79 ----------~~~~~----~~-~--------~~~~~~~~Sa~--------------~~~~v~~~~~~l~ 110 (112)
..... .. . ...+++++||+ ++.|+.++++.+.
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~ 320 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLN 320 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHH
Confidence 11111 11 1 12379999999 9999999988765
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.47 E-value=1.8e-14 Score=94.83 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=72.7
Q ss_pred ceEEeCCCcccc-------------hhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQF-------------TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.+|||||..++ ..+...+++++|++++++|.++.+... ..|+..+... ...+.|+++|+||+|
T Consensus 138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~-~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREV-DPSGDRTFGVLTKID 214 (360)
T ss_dssp EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHS-CTTCTTEEEEEECGG
T ss_pred eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHh-cccCCCEEEEEeCCc
Confidence 689999998876 667888899999999999876543222 1233333332 235689999999999
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhh
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE 107 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 107 (112)
+.+...............++.+++++|+.++.++++.+.
T Consensus 215 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 215 LMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp GCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred cCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence 976554444434333444577999999999988876544
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.45 E-value=1.2e-12 Score=92.69 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=52.9
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
.++||||||+.+|...+...++.+|++++|+|+++....+....|. .+.. .++|+++++||+|+..
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 3689999999999988999999999999999998876555544443 2222 4689999999999753
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=4.6e-13 Score=89.71 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=76.9
Q ss_pred ceEEeCCCcccc----hhh---HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQF----TAM---RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~----~~~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~~~ 73 (112)
+.+|||||.... ..+ ....++.++.+++++|++ ..++..+..|..++..+... ...|.++++||+|+...
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~- 284 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE- 284 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-
Confidence 679999997431 111 122356799999999998 66777777777766654321 35799999999998753
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.......+.....+++++++||+++.|++++++++.+
T Consensus 285 -~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~ 321 (416)
T 1udx_A 285 -EAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 321 (416)
T ss_dssp -HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHH
Confidence 2233344455556789999999999999999998764
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.43 E-value=5.3e-13 Score=88.26 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=71.4
Q ss_pred cccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHH----HHH
Q psy785 10 TEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGAS----LAR 85 (112)
Q Consensus 10 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~ 85 (112)
+++|.++++.++++++++++|+|++++. ..|...+.+.. .++|+++|+||+|+.+.. ...+...+ .++
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 5678889999999999999999999864 34666665543 368999999999996533 22333333 355
Q ss_pred HhCC---cEEEeecCCCCChhHHhhhhc
Q psy785 86 AFAC---TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 86 ~~~~---~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..++ +++++||++|.|++++++.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~ 155 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIE 155 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence 5677 799999999999999998874
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=2.7e-12 Score=90.74 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=54.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.||||||+.+|...+..+++.+|++++|+|+++..+.+....|.. +.. .++|+++++||+|+..
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 6899999999998888899999999999999998776666555543 333 4689999999999864
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.39 E-value=5.7e-13 Score=86.00 Aligned_cols=104 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred ceEEeCCCccc-------------chhhHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 2 LEILDTAGTEQ-------------FTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.||||||..+ +......+++++|++++|+|.++.... .....+...+. ..+.|+++|+||+
T Consensus 133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKL 208 (315)
T ss_dssp EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECT
T ss_pred cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCc
Confidence 78999999753 455677789999999999997443211 11112222222 2568999999999
Q ss_pred CCCCcccccHHHHHHHHHHhCCcEEEeecCC------CCChhHHhhhh
Q psy785 68 DLEEERVVGKEQGASLARAFACTFLETSAKA------KVNSWLCVECT 109 (112)
Q Consensus 68 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~l 109 (112)
|+.+......+.........+..++++|+.+ +.|+.++++.+
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~ 256 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE 256 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence 9975443222222210011224566666555 56777777664
No 188
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.37 E-value=1.4e-12 Score=82.09 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=63.9
Q ss_pred ceEEeCCCcccchhhHH------hhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQFTAMRD------LYMKNGQGFILVYSITAQS---TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
+.||||||+........ ..+.+ +++++++|..... .+.....+...... ..+.|+++|+||+|+.+.
T Consensus 111 ~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 111 YVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSE 186 (262)
T ss_dssp EEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCH
T ss_pred EEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccccc
Confidence 67999999887543321 24466 8889999875432 22221111111111 135899999999998653
Q ss_pred ccccHHHHHH----------------------------HHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 73 RVVGKEQGAS----------------------------LARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 73 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
... +...+ .+.+++ .+++++||+++.|++++++++.+
T Consensus 187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE 253 (262)
T ss_dssp HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHH
Confidence 321 11111 123333 48999999999999999998753
No 189
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.36 E-value=1.5e-12 Score=81.84 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=66.9
Q ss_pred ceEEeCCCc--------ccchhhHHhh----cccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGT--------EQFTAMRDLY----MKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~--------~~~~~~~~~~----~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+.+|||||. +.+......+ .+++|++++|+|+++.... ..+..|+..+... ...+.|+++++||.|
T Consensus 72 i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~D 150 (247)
T 3lxw_A 72 VEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKED 150 (247)
T ss_dssp EEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGG
T ss_pred EEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHh
Confidence 689999996 3332223233 3899999999999753221 1222333333211 113589999999999
Q ss_pred CCCcccc------cHHHHHHHHHHhCCcEEEeecCC-----CCChhHHhhhhc
Q psy785 69 LEEERVV------GKEQGASLARAFACTFLETSAKA-----KVNSWLCVECTN 110 (112)
Q Consensus 69 ~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~-----~~~v~~~~~~l~ 110 (112)
+.+.... ..+.++.+.+..+..+..+++.. +.|+.++++.+.
T Consensus 151 l~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~ 203 (247)
T 3lxw_A 151 LAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVE 203 (247)
T ss_dssp GTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHH
Confidence 9642211 01335666777777777666554 578999988764
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=5.9e-13 Score=88.78 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhh
Q psy785 57 DVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVE 107 (112)
Q Consensus 57 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 107 (112)
.+|+++++||+|+.. .. ......+.....+.+++++||+.+.++.++++
T Consensus 214 ~kP~i~v~NK~D~~~-~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-DE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-HH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-hH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 489999999999862 11 11222222222367899999999999987655
No 191
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.33 E-value=2.7e-12 Score=84.93 Aligned_cols=94 Identities=20% Similarity=0.184 Sum_probs=69.8
Q ss_pred CcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHH----H
Q psy785 9 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASL----A 84 (112)
Q Consensus 9 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~ 84 (112)
.+++|.++.+.++++++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+.+.. ...+...++ +
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 478899999989999999999999998763 3444444443 368999999999997532 223333333 4
Q ss_pred HHhCC---cEEEeecCCCCChhHHhhhhc
Q psy785 85 RAFAC---TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 85 ~~~~~---~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
+..|+ +++.+||++|.|++++++.+.
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~ 157 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAIN 157 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence 55566 789999999999999998874
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.32 E-value=1.4e-12 Score=85.78 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=64.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.||||||.... ....++.+|++++|+|.+..+..+.+. . ...+.|.++|+||+|+.+.... .....
T Consensus 174 ~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~-~~~~~ 240 (355)
T 3p32_A 174 VILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEA-RLAAR 240 (355)
T ss_dssp EEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHH-HHHHH
T ss_pred EEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHH-HHHHH
Confidence 679999995432 223358999999999987655432221 1 1134699999999998643221 11112
Q ss_pred HHHHH---h-------CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARA---F-------ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~---~-------~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++... . +.+++++||++|.|++++++++.+
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~ 280 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVER 280 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 22221 1 468999999999999999998753
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=2e-11 Score=74.35 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=68.3
Q ss_pred ceEEeCCCccc----------chhhHHhhc---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 2 LEILDTAGTEQ----------FTAMRDLYM---KNGQGFILVYSITAQSTFND--LSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 2 ~~i~Dt~g~~~----------~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
+.+|||||... +......++ +.++++++++|++.+.+... +..|+ .. .++|.++++||
T Consensus 74 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~----~~~~~~~v~nK 146 (210)
T 1pui_A 74 KRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD----SNIAVLVLLTK 146 (210)
T ss_dssp EEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH----TTCCEEEEEEC
T ss_pred EEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH----cCCCeEEEEec
Confidence 57999999742 233333344 57899999999987654432 22332 11 45899999999
Q ss_pred CCCCCccc--ccHHHHHHHHHHhC--CcEEEeecCCCCChhHHhhhhcc
Q psy785 67 CDLEEERV--VGKEQGASLARAFA--CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 67 ~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+|+.+... .....+..++.+.+ +.++++||+++.|++++++.+.+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 99865322 11233444444444 47889999999999999998753
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.29 E-value=4.2e-11 Score=82.76 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=52.4
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|+||||+.+|..-....++-+|++++|+|....-.-+...-|.. ..+ .++|+++++||+|..
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~----~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM----RATPVMTFVNKMDRE 165 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSC
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH----hCCceEEEEecccch
Confidence 37899999999999988889999999999999987654444444533 333 569999999999974
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=3.7e-13 Score=88.47 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=63.4
Q ss_pred ceEEeCCCcc-------------cchhhHHhhcccCCEEEEE-EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 2 LEILDTAGTE-------------QFTAMRDLYMKNGQGFILV-YSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.||||||.. .+..+...++++++.++++ .+.+....-.....+...+ ...+.|+++|+||+
T Consensus 132 l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~NK~ 207 (353)
T 2x2e_A 132 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVITKL 207 (353)
T ss_dssp EEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEECG
T ss_pred cEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEeccc
Confidence 7899999963 3455777777777666655 4544322111111233332 23578999999999
Q ss_pred CCCCcccccHHHHHH--HHHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 68 DLEEERVVGKEQGAS--LARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 68 D~~~~~~~~~~~~~~--~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
|+.+........... +....++ +++++||+++.|++++++.+.
T Consensus 208 Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 208 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp GGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred cccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence 997543311211111 0011233 678899999999999998764
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.25 E-value=1.9e-12 Score=83.54 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=55.5
Q ss_pred ceEEeCCCc-------ccchhhHH-------hhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy785 2 LEILDTAGT-------EQFTAMRD-------LYMKN-------------GQGFILVYSITAQSTFNDLSDLREQILRVKD 54 (112)
Q Consensus 2 ~~i~Dt~g~-------~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~ 54 (112)
+.+|||+|+ +.+..+.. .++++ +++++++.+++.. +++.... ..+....
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~- 153 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH- 153 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-
Confidence 689999998 55555554 44433 2345555554321 2222211 2222221
Q ss_pred CCCCcEEEEeeCCCCCCcccc--cHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 55 TDDVPMVLVGNKCDLEEERVV--GKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 55 ~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
...|+++|+||.|+...++. ..+.+.++++.++++++++||+++ |++++|..+.
T Consensus 154 -~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 154 -NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp -TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred -hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence 35799999999999754432 235667788888999999999999 9999998765
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.24 E-value=1.1e-11 Score=76.21 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=64.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.+|||+|+-.... .+..+++.+++|+|++.... ....+.. . .+.|.++++||+|+.+......+...
T Consensus 111 ~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 111 LLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPE-I------FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp EEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHH-H------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred EEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhh-h------hhcCCEEEEecccCCcchhhHHHHHH
Confidence 46899998521111 11136788999999876532 1111111 1 23789999999998643223455555
Q ss_pred HHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF--ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
+..+.. +.+++++||++|.|++++++++.+
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~ 210 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG 210 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence 555554 468999999999999999998753
No 198
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.22 E-value=3.3e-11 Score=76.21 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=47.8
Q ss_pred ceEEeCCCcccchhhHHhhcc---------cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMK---------NGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~~ 71 (112)
+.+|||||++++....+.+++ ++|++++|++++.....+....|+..+.+.... ...|+++|+||+|+.+
T Consensus 86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 689999999877544333332 899999999887644212223566666654322 2359999999999864
Q ss_pred c
Q psy785 72 E 72 (112)
Q Consensus 72 ~ 72 (112)
.
T Consensus 166 ~ 166 (262)
T 3def_A 166 P 166 (262)
T ss_dssp S
T ss_pred C
Confidence 3
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=82.60 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=50.7
Q ss_pred ceEEeCCCcccch-------hh------------------HHhhcccCCE--EEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy785 2 LEILDTAGTEQFT-------AM------------------RDLYMKNGQG--FILVYSITAQSTFNDLS-DLREQILRVK 53 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~------------------~~~~~~~~d~--~i~v~d~~~~~s~~~~~-~~~~~i~~~~ 53 (112)
+.+|||+|...+. .+ .+.++.++++ ++++.+.+. .++.... .|+..+.
T Consensus 90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--- 165 (418)
T 2qag_C 90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--- 165 (418)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT---
T ss_pred eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh---
Confidence 6799999986541 11 1234455554 444444331 2233322 4655553
Q ss_pred CCCCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecCCCCChhHHhhhhcc
Q psy785 54 DTDDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 54 ~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+.|+++|+||+|+...+.+.. ..+.+.+...+++++++||+++.++.++|..+.+
T Consensus 166 --~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 166 --EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp --TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred --ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 3689999999999976554433 4566677778999999999999999988876653
No 200
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.17 E-value=8.8e-11 Score=75.17 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=65.7
Q ss_pred EEeCCCcc-cchhhHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 4 ILDTAGTE-QFTAMRDLYMKNGQGFILVYSITAQSTFN--DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 4 i~Dt~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+-..||+. +........++++|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+.+... .+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~ 71 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQW 71 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHH
Confidence 34567766 44556667789999999999999887653 333332 4689999999999975211 2223
Q ss_pred HHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 81 ASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
.++.++.+++++++||+++.|+.++++.+.
T Consensus 72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 72 KEHFENQGIRSLSINSVNGQGLNQIVPASK 101 (282)
T ss_dssp HHHHHTTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred HHHHHhcCCcEEEEECCCcccHHHHHHHHH
Confidence 344445578999999999999999887653
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.16 E-value=3.6e-11 Score=86.58 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=54.7
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++||||||+.+|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+.
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 689999999999999999999999999999999887777766564332 2 468999999999985
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.15 E-value=8.4e-11 Score=82.56 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=50.5
Q ss_pred CceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 1 ~~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+++|+||||+.+|.......++-+|++++|+|+...-.-+....|.. +.+ .++|.++++||+|..
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH----HTCSCEECCEECCSS
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH----cCCCeEEEEeccccc
Confidence 37899999999999988899999999999999976543333333432 333 458999999999964
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.13 E-value=5.4e-11 Score=77.92 Aligned_cols=98 Identities=18% Similarity=0.084 Sum_probs=60.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccH--HH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGK--EQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~ 79 (112)
+.||||||....... ..+.+|++++|+|.+..+.++.+.. .. .+.|.++|+||+|+.+...... ..
T Consensus 151 i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 151 VVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp EEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred EEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHH
Confidence 689999997654332 3589999999999875543221111 01 1368899999999864322111 11
Q ss_pred HHHHHHHh-------CCcEEEeecCCCCChhHHhhhhcc
Q psy785 80 GASLARAF-------ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 80 ~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
........ ..+++++||++|.|++++++.+.+
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~ 257 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID 257 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 22211121 347899999999999999988753
No 204
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=1.9e-10 Score=74.35 Aligned_cols=94 Identities=17% Similarity=0.069 Sum_probs=66.7
Q ss_pred cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc--cHHHHHHHHHHhC
Q psy785 12 QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV--GKEQGASLARAFA 88 (112)
Q Consensus 12 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~ 88 (112)
+.+.+.+..+.++|.+++|+|...|. +...+.+++..... .++|+++|.||+|+.+.... ..+...+..+..|
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g 150 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG 150 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC
Confidence 34456677889999999999998765 44455555444333 57899999999999754320 1223334444568
Q ss_pred CcEEEeecCCCCChhHHhhhh
Q psy785 89 CTFLETSAKAKVNSWLCVECT 109 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l 109 (112)
++++.+||.++.|+++++...
T Consensus 151 ~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp CCEEECCHHHHTTCTTTGGGG
T ss_pred CeEEEEecCCCCCHHHHHhhc
Confidence 999999999999999887654
No 205
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.07 E-value=4e-10 Score=71.50 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=46.7
Q ss_pred ceEEeCCCcccchhhH-------Hhh--cccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCC-CCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMR-------DLY--MKNGQGFILVYSITAQSTFND-LSDLREQILRVKDT-DDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~-------~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~p~ivv~nK~D~~ 70 (112)
+.+|||||+.++.... ..+ .+++|++++|+|++.. ++.. ...|+..+.+.... ...|+++|+||+|+.
T Consensus 89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 6899999987664221 112 3479999999988653 2322 23566666554321 126999999999997
Q ss_pred Ccc
Q psy785 71 EER 73 (112)
Q Consensus 71 ~~~ 73 (112)
+..
T Consensus 168 ~~~ 170 (270)
T 1h65_A 168 PPD 170 (270)
T ss_dssp CGG
T ss_pred CcC
Confidence 544
No 206
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.04 E-value=2.2e-10 Score=79.24 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=52.0
Q ss_pred ceEEeCCCccc-----------chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQ-----------FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.||||||... +...+..++.++|++++|+|+++.........|+..+.. .+.|+++|+||+|+.
T Consensus 156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMV 231 (550)
T ss_dssp CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGS
T ss_pred EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCcc
Confidence 68999999875 556677788999999999999875444445556555543 457999999999987
Q ss_pred Ccc
Q psy785 71 EER 73 (112)
Q Consensus 71 ~~~ 73 (112)
+..
T Consensus 232 ~~~ 234 (550)
T 2qpt_A 232 ETQ 234 (550)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 207
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=2.1e-09 Score=70.92 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=31.2
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
..+|+++++|+.|..-......+...+++...+.+++++||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 3589999999998642112234556677777789999999875
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.02 E-value=8.1e-10 Score=72.61 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=58.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.|+||+|.... .....+.+|.+++|+|++.....+.+.. .+ ...|.++|+||+|+.+.... .....
T Consensus 169 ~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~~ 235 (349)
T 2www_A 169 IILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQA 235 (349)
T ss_dssp EEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHHH
T ss_pred EEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHHH
Confidence 579999995422 1334679999999999986543222111 11 24688999999998632111 11112
Q ss_pred HHHHH----------hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARA----------FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.+... .+.+++++||++|.|++++++++.+
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~ 275 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKD 275 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 22211 1347899999999999999998753
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.01 E-value=1.5e-09 Score=71.80 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=35.4
Q ss_pred CCcEEEEeeCCCCC--Cc-ccccHHHHHHHHHHhCCcEEEeecCCCCChhHHh
Q psy785 57 DVPMVLVGNKCDLE--EE-RVVGKEQGASLARAFACTFLETSAKAKVNSWLCV 106 (112)
Q Consensus 57 ~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 106 (112)
.+|+++++||.|.. +. +....+...++++..+.+++++||+...++.++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS 253 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence 47999999999742 21 1223556677888888999999999865555443
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.99 E-value=5.2e-09 Score=74.36 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=51.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
++++||||+.+|..-....++-+|++++|+|+...-.-+...-|... .+ .++|.+++.||+|..
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH----HTCCEEEEEECSSST
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HH----cCCCeEEEEcccccc
Confidence 78999999999999899999999999999999765444443344333 33 468999999999964
No 211
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.99 E-value=1.4e-10 Score=82.57 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=65.7
Q ss_pred ceEEeCCCccc-------------chhhHHhhc-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 2 LEILDTAGTEQ-------------FTAMRDLYM-KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.|+||||... ...+...++ ..+|++++|+|.+....-.....+...+. ..+.|+++|.||+
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKi 227 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKL 227 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECT
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCc
Confidence 67999999543 223444444 57899999999976532222212333333 2568999999999
Q ss_pred CCCCcccccHHHHHH-H-HHHhCC-cEEEeecCCCCChhHHhhhhc
Q psy785 68 DLEEERVVGKEQGAS-L-ARAFAC-TFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 68 D~~~~~~~~~~~~~~-~-~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
|+.+........... . ....++ +++.+||++|.|++++++.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence 997544332211110 0 001233 678899999999999988765
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.92 E-value=1e-09 Score=69.60 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=62.1
Q ss_pred CCccc-chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785 8 AGTEQ-FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA 86 (112)
Q Consensus 8 ~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 86 (112)
||+.. ........++++|++++|+|+.++.+.... .+. .. ++|.++|.||+|+.+... .+...++.++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll---~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS---RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT---TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc---CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 56553 234566678999999999999888654321 011 11 689999999999975321 2233344455
Q ss_pred hCCcEEEeecCCCCChhHHhhhhcc
Q psy785 87 FACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 87 ~~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.++++ .+||+++.|++++++.+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999988754
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.84 E-value=1.3e-08 Score=66.58 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=59.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+.|+||+|...-.. .....+|.+++++|.+..+..+.+... +. ..|.+++.||+|+.+....+....+
T Consensus 150 ~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 150 VILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp EEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred EEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHHHH
Confidence 57999999754322 234789999999998654322211111 11 2466788899997532222222223
Q ss_pred HHHHHh----------CCcEEEeecCCCCChhHHhhhhcc
Q psy785 82 SLARAF----------ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 82 ~~~~~~----------~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
++.... ..+++.+||+++.|++++++.+.+
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 333221 347899999999999999987753
No 214
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.71 E-value=7.5e-08 Score=63.47 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=57.2
Q ss_pred hcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc-HHHHHHHHHHhCCcEEEeecC
Q psy785 20 YMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG-KEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
...++|.+++|.... |. +...+.+++..... .++|+++|.||+|+.+..... .+.........|++++.+||.
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 367999999887654 44 45555666544433 458889999999997532200 111222334568899999999
Q ss_pred CCCChhHHhhhh
Q psy785 98 AKVNSWLCVECT 109 (112)
Q Consensus 98 ~~~~v~~~~~~l 109 (112)
++.|++++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999886643
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.69 E-value=1.2e-08 Score=62.69 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=42.4
Q ss_pred CcEEEEeeCCCCCCcccccHHHHHHHHHHh--CCcEEEeecCCCCChhHHhhhhcc
Q psy785 58 VPMVLVGNKCDLEEERVVGKEQGASLARAF--ACTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 58 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.|.++++||+|+.+......+....+++.. +.+++++||++|.|++++|+++.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 220 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEK 220 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence 577999999998654334556666666655 569999999999999999998753
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.96 E-value=2.5e-05 Score=53.69 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=57.7
Q ss_pred ceEEeCCCcccch-hhHHh---h--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFT-AMRDL---Y--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~ 74 (112)
+.|+||||..... .+... . ...+|.+++|+|.+....... ....+.+ .+|+ .+|.||+|......
T Consensus 186 vvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~~~~g 257 (504)
T 2j37_W 186 IIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGHAKGG 257 (504)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSCCCCT
T ss_pred EEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccccchH
Confidence 5799999976421 11111 1 237899999999976432111 1222222 1574 88899999864322
Q ss_pred ccHHHHHHHHHHhCCcE------------------EEeecCCCCC-hhHHhhhhcc
Q psy785 75 VGKEQGASLARAFACTF------------------LETSAKAKVN-SWLCVECTND 111 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~l~~ 111 (112)
. ........+.|+ +.+|+..|.| +.++++++.+
T Consensus 258 ~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 258 G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 1 112233444443 3468888988 8888888763
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00026 Score=47.02 Aligned_cols=86 Identities=8% Similarity=0.104 Sum_probs=51.2
Q ss_pred ceEEeCCCcccch-------hhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEeeCCCCCC--
Q psy785 2 LEILDTAGTEQFT-------AMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKCDLEE-- 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~D~~~-- 71 (112)
+++.||||..+.. ......+++||++++|+|.++|.. .......++.... .....|.+++.||.|...
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~ 198 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS 198 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence 6899999965321 122335789999999999998642 2222333333321 124578899999999632
Q ss_pred ------cccccHHHHHHHHHHhCC
Q psy785 72 ------ERVVGKEQGASLARAFAC 89 (112)
Q Consensus 72 ------~~~~~~~~~~~~~~~~~~ 89 (112)
......++...+...+.+
T Consensus 199 i~~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 199 ITNTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp EEESSCCSSCCHHHHHHHHHHTTC
T ss_pred hhcchhhhhccHHHHHHHHHHhcc
Confidence 122344555555555544
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.62 E-value=3e-05 Score=51.83 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=23.2
Q ss_pred ceEEeCCCcccchh-------hHHhhcccCCEEEEEEeCCCh
Q psy785 2 LEILDTAGTEQFTA-------MRDLYMKNGQGFILVYSITAQ 36 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-------~~~~~~~~~d~~i~v~d~~~~ 36 (112)
+++|||||+.++.+ .+..+++++|++++|+|+++.
T Consensus 88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 78999999887543 456678999999999998754
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.24 E-value=0.0032 Score=42.13 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=29.2
Q ss_pred CCcEEEEeeCCCCC-C-cccccHHHHHHHHHHhC--CcEEEeecCC
Q psy785 57 DVPMVLVGNKCDLE-E-ERVVGKEQGASLARAFA--CTFLETSAKA 98 (112)
Q Consensus 57 ~~p~ivv~nK~D~~-~-~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 98 (112)
..|++.++|+.|.. . ......+...+++.+.+ .+++++||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 48999999999832 1 11222456677777665 7899999985
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.0067 Score=41.22 Aligned_cols=91 Identities=15% Similarity=0.004 Sum_probs=53.0
Q ss_pred ceEEeCCCcccchh-----hHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA-----MRD-LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-----~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|+||||...... +.. .....+|.+++|+|.+....... ....+.+ .-.+..+|.||.|.....
T Consensus 185 vVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~----~~~i~gVIlTKlD~~~~g-- 255 (443)
T 3dm5_A 185 IIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE----ATPIGSIIVTKLDGSAKG-- 255 (443)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----SCTTEEEEEECCSSCSSH--
T ss_pred EEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----hCCCeEEEEECCCCcccc--
Confidence 45899999543211 111 11346899999999876433222 2222332 123556889999975422
Q ss_pred cHHHHHHHHHHhCCcEEEeecCCCCChhHH
Q psy785 76 GKEQGASLARAFACTFLETSAKAKVNSWLC 105 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 105 (112)
..........+.|+.+++. |++++++
T Consensus 256 --G~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 256 --GGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp --HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred --cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 2233445567889988886 6666543
No 221
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.87 E-value=0.0079 Score=35.92 Aligned_cols=84 Identities=8% Similarity=0.017 Sum_probs=53.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+-++|||+.. .......+..+|.++++...+... ..+...+..+.+... ..+.++.+|.|+.+... .. ....
T Consensus 78 ~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~ 150 (206)
T 4dzz_A 78 FAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVL 150 (206)
T ss_dssp EEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHH
T ss_pred EEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHH
Confidence 4689999765 334455677899999999876543 556666666654322 13567789999998532 12 2334
Q ss_pred HHHHHHhCCcEE
Q psy785 81 ASLARAFACTFL 92 (112)
Q Consensus 81 ~~~~~~~~~~~~ 92 (112)
.+..++++.+++
T Consensus 151 ~~~l~~~~~~vl 162 (206)
T 4dzz_A 151 KESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHTCCBC
T ss_pred HHHHHHcCCcee
Confidence 555555665544
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.84 E-value=0.015 Score=39.34 Aligned_cols=96 Identities=17% Similarity=0.045 Sum_probs=53.0
Q ss_pred ceEEeCCCcccchh-hHH---hh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-c-EEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQFTA-MRD---LY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV-P-MVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~D~~~~~ 73 (112)
+-|+||||...... +.. .. +..+|.+++|+|.+..... ......+. ... | ..+|.||+|.....
T Consensus 183 ~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~-----~~~~~i~gvVlnK~D~~~~~ 254 (432)
T 2v3c_C 183 VLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAFK-----EAVGEIGSIIVTKLDGSAKG 254 (432)
T ss_dssp EEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHHH-----TTSCSCEEEEEECSSSCSTT
T ss_pred EEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHHh-----hcccCCeEEEEeCCCCccch
Confidence 46899999764321 111 11 2368999999998654321 11112221 224 5 78899999975322
Q ss_pred cccHHHHHHHHHHhCCcEEEe------------------ecCCCCC-hhHHhhhh
Q psy785 74 VVGKEQGASLARAFACTFLET------------------SAKAKVN-SWLCVECT 109 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~------------------Sa~~~~~-v~~~~~~l 109 (112)
. .........+.++.++ |+..|.| +..+++.+
T Consensus 255 g----~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~ 305 (432)
T 2v3c_C 255 G----GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKA 305 (432)
T ss_dssp H----HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTT
T ss_pred H----HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHH
Confidence 1 2223445556555444 5666666 55555554
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.62 E-value=0.045 Score=35.16 Aligned_cols=89 Identities=17% Similarity=0.051 Sum_probs=52.9
Q ss_pred ceEEeCCCccc--chh-hHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCc
Q psy785 2 LEILDTAGTEQ--FTA-MRD-----LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~ 72 (112)
+-++||||... ... +.. .....+|.+++|+|.+.... .......+.+ ..| .-+|.||.|....
T Consensus 183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGGCTT
T ss_pred EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCCCcc
Confidence 46899999776 321 221 12447899999999864321 1112222222 245 6678999997532
Q ss_pred ccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 73 RVVGKEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
...........+.|+.+++ .|.++++
T Consensus 255 ----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 255 ----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 2234456667788888877 4666544
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.51 E-value=0.029 Score=38.01 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=51.8
Q ss_pred ceEEeCCCccc--ch-----hhHHh-hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc
Q psy785 2 LEILDTAGTEQ--FT-----AMRDL-YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER 73 (112)
Q Consensus 2 ~~i~Dt~g~~~--~~-----~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~ 73 (112)
+-+.||||... .. .+... ..-.++.+++|+|.+.......+ ...+.+. -.+..++.||.|....
T Consensus 182 vvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~----~~~~gVIlTKlD~~a~- 253 (433)
T 3kl4_A 182 IIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA----SPIGSVIITKMDGTAK- 253 (433)
T ss_dssp EEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH----CSSEEEEEECGGGCSC-
T ss_pred EEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc----cCCcEEEEeccccccc-
Confidence 45899999643 11 11110 12256999999998764332222 2223321 1357788999997532
Q ss_pred cccHHHHHHHHHHhCCcEEEeecCCCCChh
Q psy785 74 VVGKEQGASLARAFACTFLETSAKAKVNSW 103 (112)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 103 (112)
...........+.|+.+++. |.+++
T Consensus 254 ---~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 254 ---GGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp ---HHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred ---chHHHHHHHHHCCCEEEEEC--CCChH
Confidence 22334455567899988886 66654
No 225
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.22 E-value=0.00022 Score=47.19 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=55.0
Q ss_pred ceEEeCCCcccchh--------hHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTA--------MRDLYM--KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.++||||...... ....++ +..+.++++++..+..-+..+.. .......+.|++++.||.|...
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccc
Confidence 57999999543221 111122 67899999999743211111100 1111124689999999999864
Q ss_pred cccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 72 ERVVGKEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
.... ......+.+..|..+.+.++.+..++.+
T Consensus 289 ~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 289 RTKL-EKADSLYANQLGELLSPPSKRYAAEFPP 320 (369)
T ss_dssp EEEG-GGHHHHHHHHBTTTBCSSCGGGTTTCCC
T ss_pred cccH-HHHHHHHHHhcCCccCCCCchhhhhccC
Confidence 3332 3334455566777777777766555443
No 226
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.11 E-value=0.13 Score=32.77 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=52.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~ 80 (112)
+-|+|||+...... ....+..+|.++++...+ ..++..+...+..+.+.....+.+++ +|.|+.+.. ...
T Consensus 159 ~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~ 229 (307)
T 3end_A 159 VVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEV 229 (307)
T ss_dssp EEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHH
T ss_pred EEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHH
Confidence 45889986443221 234567899999999764 55677776666666654323456655 889999832 234
Q ss_pred HHHHHHhCCcEEE
Q psy785 81 ASLARAFACTFLE 93 (112)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (112)
.++.+.++.+++.
T Consensus 230 ~~~~~~~g~~v~~ 242 (307)
T 3end_A 230 DRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHHHHHcCCCcee
Confidence 5556667776654
No 227
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.08 E-value=0.091 Score=31.75 Aligned_cols=83 Identities=7% Similarity=0.017 Sum_probs=52.1
Q ss_pred ceEEeCCCc-ccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHH
Q psy785 2 LEILDTAGT-EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQG 80 (112)
Q Consensus 2 ~~i~Dt~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 80 (112)
+-++|||+. ... .....+..+|.++++...+ ..++..+...+..+.+.. +.+..+|.|+.+.... . ...+.
T Consensus 70 ~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~-~~~~~ 141 (209)
T 3cwq_A 70 NIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-K-DGDEA 141 (209)
T ss_dssp EEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-C-HHHHH
T ss_pred EEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-h-HHHHH
Confidence 458999976 332 3345667899999999875 456666666666665532 4678899999986431 1 13344
Q ss_pred HHHHHHhCCcEE
Q psy785 81 ASLARAFACTFL 92 (112)
Q Consensus 81 ~~~~~~~~~~~~ 92 (112)
.+..++++.+++
T Consensus 142 ~~~l~~~g~~v~ 153 (209)
T 3cwq_A 142 RQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHTTCCBC
T ss_pred HHHHHHcCCchh
Confidence 455555665544
No 228
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.72 E-value=0.00028 Score=46.69 Aligned_cols=95 Identities=8% Similarity=-0.005 Sum_probs=51.5
Q ss_pred ceEEeCCCcccchh--------hHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTA--------MRDLY--MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+.++||||...... ....+ .+..+.++++++.....-...+.. .......+.|++++.||.|...
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccc
Confidence 57999999643221 11111 357888999998743211111100 1111124689999999999864
Q ss_pred cccccHHHHHHHHHHhCCcEEEeecCCCCCh
Q psy785 72 ERVVGKEQGASLARAFACTFLETSAKAKVNS 102 (112)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 102 (112)
.... ......+.+..|..+.+.++.+..++
T Consensus 288 ~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 288 RTKL-EKADELYKNHAGDLLSPPTPEELENM 317 (368)
T ss_dssp EEEH-HHHHHHHHHHBTTTBCSSCHHHHHTS
T ss_pred cccH-HHHHHHHHHHhCCccCCCchhhHhhc
Confidence 3332 33344455566666666565543333
No 229
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.89 E-value=0.25 Score=30.64 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=40.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEE-EEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMV-LVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~i-vv~nK~D~~ 70 (112)
+-++|||+.... .....+..+|.+++++..+. .++..+...+..+..... ..+.+++ +|.|+.+..
T Consensus 114 ~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 114 LVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp EEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred EEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 458999975432 23345567999999999764 444444444333332211 1356664 889999854
No 230
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.40 E-value=0.26 Score=30.69 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=48.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCC-----cccc
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEE-----ERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~-----~~~~ 75 (112)
+-|+|||+...........+..+|.++++...+. .+...+...+..+.+ .+.+++ +|.|+.|... ....
T Consensus 131 ~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~ 205 (262)
T 2ph1_A 131 HLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE----TNTSVLGLVENMSYFVCPNCGHKSYI 205 (262)
T ss_dssp EEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT----TTCCEEEEEETTCCEECTTTCCEECT
T ss_pred EEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh----CCCCEEEEEECCCccCCccccccccc
Confidence 4589999754322222222236899999987653 455555555555543 346776 8899987421 1111
Q ss_pred -cHHHHHHHHHHhCCcEEE
Q psy785 76 -GKEQGASLARAFACTFLE 93 (112)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~ 93 (112)
.......+.+.++.+++.
T Consensus 206 ~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 206 FGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp TCCCCHHHHHHHTTCSEEE
T ss_pred ccccHHHHHHHHcCCCeEE
Confidence 111234555667776554
No 231
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.18 E-value=0.32 Score=30.25 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=42.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-++|||+.. .......+..+|.++++...+ ..+...+......+.+.. .+.++.+|.|+..
T Consensus 147 ~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 147 YIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp EEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred EEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 4588998644 233455566799999999975 456666666666555532 3467789999994
No 232
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.04 E-value=0.6 Score=28.84 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+-|+|+|+... ......+..+|.++++...+ ..+...+...+..+.+. ...+.-+|.|+.+..... ....
T Consensus 113 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~----~~~~ 182 (263)
T 1hyq_A 113 ILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLGIE----MAKN 182 (263)
T ss_dssp EEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTTHH----HHHH
T ss_pred EEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCccccc----chHH
Confidence 45899996543 33445567899999998864 45666666666665553 123455789999854211 2334
Q ss_pred HHHHHhCCcEE
Q psy785 82 SLARAFACTFL 92 (112)
Q Consensus 82 ~~~~~~~~~~~ 92 (112)
...+..+.+++
T Consensus 183 ~~~~~~~~~~~ 193 (263)
T 1hyq_A 183 EIEAILEAKVI 193 (263)
T ss_dssp HHHHHTTSCEE
T ss_pred HHHHHhCCCeE
Confidence 44455666544
No 233
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.81 E-value=0.62 Score=28.21 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=42.1
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+-++|+|+... ......+..+|.++++...+ ..+...+...+..+.+. ...+.-+|.|+.+..
T Consensus 114 ~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 114 FILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS 176 (237)
T ss_dssp EEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred EEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcc
Confidence 45889987543 33455678899999999865 45666666666666553 123456788999864
No 234
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.81 E-value=0.14 Score=31.62 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=42.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-----TDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~D~ 69 (112)
+-++|||+... ......+..+|.++++.+.+ ..++..+...+..+..... ....+.-+|.|+.+.
T Consensus 116 ~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 116 FIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp EEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred EEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 45899997443 34555677899999999864 5566666666555543221 012467788999984
No 235
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.80 E-value=0.64 Score=28.29 Aligned_cols=84 Identities=7% Similarity=0.090 Sum_probs=53.5
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 81 (112)
+-++|||+... ......+..+|.++++...+ ..+...+...+..+.+.. .....+-+|.|+.+... .... +
T Consensus 121 ~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~--~~~~---~ 191 (245)
T 3ea0_A 121 YIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS--RITS---D 191 (245)
T ss_dssp EEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT--TSCH---H
T ss_pred EEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC--CCCH---H
Confidence 45889987442 24455678899999999875 567777777766665432 22356778899998643 2222 2
Q ss_pred HHHHHhCCcEEEe
Q psy785 82 SLARAFACTFLET 94 (112)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (112)
.+.+.++.+++.+
T Consensus 192 ~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 192 EIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHTSCEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 3444567666544
No 236
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.53 E-value=1.1 Score=27.65 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=50.3
Q ss_pred ceEEeCCCcccchhhH-HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAMR-DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM-VLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~~ 79 (112)
+-++||||......+. ......+|.++++...+ ..++..+...+..+.......+.++ -+|.|+.+.. ...+.
T Consensus 118 ~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~ 192 (269)
T 1cp2_A 118 YVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEYEL 192 (269)
T ss_dssp EEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCHHH
T ss_pred EEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhHHH
Confidence 4588998754322221 12235789999998864 4566666666666655433234554 5788998632 12344
Q ss_pred HHHHHHHhCCcEE
Q psy785 80 GASLARAFACTFL 92 (112)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (112)
...+.+.++.+++
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 4556566776655
No 237
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.22 E-value=0.76 Score=27.91 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=40.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-++|||+.... .....+..+|.++++...+ ..++..+......+.+. ....+.++.||.+
T Consensus 134 ~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 134 AVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL---GIKKVRYVINKVR 194 (254)
T ss_dssp EEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCSCEEEEEEEEC
T ss_pred EEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc---CCccEEEEEeCCC
Confidence 458899864432 3445568899999999874 55666665555544332 1245778899998
No 238
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.69 E-value=0.55 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=23.9
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA 35 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 35 (112)
+-|+|||+.. .......+..+|.++++...+.
T Consensus 106 ~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 106 FILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp EEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred EEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4589999764 3445566789999999998753
No 239
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.80 E-value=2.6 Score=28.40 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=53.4
Q ss_pred ceEEeCCCccc----chhhHH-hhcccCCEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC--Cc
Q psy785 2 LEILDTAGTEQ----FTAMRD-LYMKNGQGFILVYSIT--AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE--EE 72 (112)
Q Consensus 2 ~~i~Dt~g~~~----~~~~~~-~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~--~~ 72 (112)
+.+||++|... ...... .-+.+.+..++ ++.. ..... .+.. .+.. .+.|+++|.||.|+. ++
T Consensus 122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv-~la~---aL~~----~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDI-DIAK---AISM----MKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHH-HHHH---HHHH----TTCEEEEEECCHHHHHHHH
T ss_pred eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHH-HHHH---HHHh----cCCCeEEEEecCcccccCc
Confidence 57899998532 111111 12345566665 7765 22221 1122 2222 357999999999863 10
Q ss_pred -----ccccHH----HHHHHHH----HhC---CcEEEeec--CCCCChhHHhhhhc
Q psy785 73 -----RVVGKE----QGASLAR----AFA---CTFLETSA--KAKVNSWLCVECTN 110 (112)
Q Consensus 73 -----~~~~~~----~~~~~~~----~~~---~~~~~~Sa--~~~~~v~~~~~~l~ 110 (112)
...... ...+++. +.+ ..++.+|+ .++.|++++.+.+.
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 111122 2233331 222 26788999 66677999887764
No 240
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.18 E-value=2.9 Score=27.77 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=34.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChh---h---HHHHHHHHHHHHhhcCCCCCc-EEEEeeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQS---T---FNDLSDLREQILRVKDTDDVP-MVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D 68 (112)
+-|+|||..-. ......+..+|.++++...+... + +..+......+.+......+. ++.+.|+.+
T Consensus 250 ~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~ 321 (403)
T 3ez9_A 250 FIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMT 321 (403)
T ss_dssp EEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC--
T ss_pred EEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccC
Confidence 46889996443 33445567899999999875432 1 122233333333322112222 455788887
No 241
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.00 E-value=2.4 Score=26.61 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=48.3
Q ss_pred ceEEeCCCcccchhh-HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCcccccHHH
Q psy785 2 LEILDTAGTEQFTAM-RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERVVGKEQ 79 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~ 79 (112)
+-|+||||......+ .......+|.++++...+ ..++..+...+..+.......+.+ .-+|.|+.+.. .....
T Consensus 121 ~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~~~ 195 (289)
T 2afh_E 121 FVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD----REDEL 195 (289)
T ss_dssp EEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT----THHHH
T ss_pred EEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch----hHHHH
Confidence 458899875432222 122235789999988864 456666555555555433223455 34678998632 12333
Q ss_pred HHHHHHHhCCcEE
Q psy785 80 GASLARAFACTFL 92 (112)
Q Consensus 80 ~~~~~~~~~~~~~ 92 (112)
...+.+.++.+++
T Consensus 196 ~~~l~~~~g~~~l 208 (289)
T 2afh_E 196 IIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHTSCEE
T ss_pred HHHHHHHcCcccc
Confidence 4455566676655
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.71 E-value=2.3 Score=27.65 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=49.6
Q ss_pred eEEeCCCcccchh-hHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccccc
Q psy785 3 EILDTAGTEQFTA-MRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVG 76 (112)
Q Consensus 3 ~i~Dt~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~ 76 (112)
.+.||+|...... +... ..-.+|-.++++|.+... ........+.+. .+ ...++.||.|-....
T Consensus 215 vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~~a~~--- 284 (328)
T 3e70_C 215 VLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDADARG--- 284 (328)
T ss_dssp EEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGGCSCC---
T ss_pred hHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCCccch---
Confidence 4789999643221 1111 112478889999976543 222223333321 12 346778999963321
Q ss_pred HHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 77 KEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
-.........+.|+.+++ +|.++++
T Consensus 285 -G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 285 -GAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -HHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 223456667789988888 6666544
No 243
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=88.89 E-value=1.5 Score=27.53 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=38.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~ 70 (112)
+-|+|||+...... .......+|.+++++.... .+...+......+.+ .+.+++ +|.|+.|..
T Consensus 194 ~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 194 FVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp EEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred EEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 45899997543211 2234467899999998754 344555555555543 345665 789999864
No 244
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=88.85 E-value=2.8 Score=26.35 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=44.2
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEE-EEeeCCCCCCcccccHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMV-LVGNKCDLEEERVVGKE 78 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~i-vv~nK~D~~~~~~~~~~ 78 (112)
+-|+|||+..... ....+..+|.++++...+. .+...+...+..+.+... ..+.+++ +|.|+.|... .....
T Consensus 157 ~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~~~~~ 231 (298)
T 2oze_A 157 LIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--ATIKS 231 (298)
T ss_dssp EEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--HHHHH
T ss_pred EEEEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--HHHHH
Confidence 4588999754332 2334456999999998643 344444443333332110 1346644 7889998642 12223
Q ss_pred HHHHHHHHhC
Q psy785 79 QGASLARAFA 88 (112)
Q Consensus 79 ~~~~~~~~~~ 88 (112)
..+++.+.++
T Consensus 232 ~~~~~~~~~~ 241 (298)
T 2oze_A 232 NLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 3444555554
No 245
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=87.23 E-value=0.97 Score=31.95 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=34.2
Q ss_pred ceEEeCCCcc-------------cchhhHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 2 LEILDTAGTE-------------QFTAMRDLYMKNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 2 ~~i~Dt~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
+.+.|.||.. ....+...++.+..++++++-..+.+ .-.........+ ...+.+.++|.||.
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTKP 224 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEECG
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecch
Confidence 5688988622 12234555555554444444333322 111122222222 23567999999999
Q ss_pred CCCC
Q psy785 68 DLEE 71 (112)
Q Consensus 68 D~~~ 71 (112)
|+.+
T Consensus 225 Dlv~ 228 (608)
T 3szr_A 225 DLVD 228 (608)
T ss_dssp GGSS
T ss_pred hhcC
Confidence 9864
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.46 E-value=5.8 Score=26.87 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=45.3
Q ss_pred ceEEeCCCcccch-hhHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFT-AMRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|+||||..... .+... ..-.++.+++|+|..... +.......+... -+ ..-+|.||.|.....
T Consensus 183 vVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~---l~-i~GVIlTKlD~~~~~-- 253 (425)
T 2ffh_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK---VG-VTGLVLTKLDGDARG-- 253 (425)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH---TC-CCEEEEESGGGCSSC--
T ss_pred EEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc---CC-ceEEEEeCcCCcccH--
Confidence 4589999965332 11111 123689999999986432 111222222221 11 245678999864322
Q ss_pred cHHHHHHHHHHhCCcEEEeec
Q psy785 76 GKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa 96 (112)
..........+.|+.+++.
T Consensus 254 --g~alsi~~~~g~PI~flg~ 272 (425)
T 2ffh_A 254 --GAALSARHVTGKPIYFAGV 272 (425)
T ss_dssp --HHHHHHHHHHCCCEEEEEC
T ss_pred --HHHHHHHHHHCCCEEEEeC
Confidence 2333455667888877663
No 247
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.36 E-value=1.1 Score=28.21 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=26.8
Q ss_pred cCCEEEEEEeCCC-h-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCc
Q psy785 23 NGQGFILVYSITA-Q-STFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEE 72 (112)
Q Consensus 23 ~~d~~i~v~d~~~-~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~ 72 (112)
.++++++++|... + +..+ ...+..+.+ . .++++|.+|+|....
T Consensus 111 Ral~~lllldep~~gL~~lD--~~~l~~L~~----~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD--LEFMKHLSK----V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH--HHHHHHHHT----T-SEEEEEETTGGGSCH
T ss_pred eeeeeeEEEecCCCcCCHHH--HHHHHHHHh----c-CcEEEEEeccccCCH
Confidence 4688999999642 2 2222 122333332 2 899999999997653
No 248
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.82 E-value=0.54 Score=31.90 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=23.9
Q ss_pred CCCcEEEEeeCCCCCCcccccH--HHHHHHHHHhCCcEEEeecC
Q psy785 56 DDVPMVLVGNKCDLEEERVVGK--EQGASLARAFACTFLETSAK 97 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~ 97 (112)
.+.|+|+|.||+|.....+... ..+.+.....|++++.+|..
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 5689999999999875433211 11111122346777777753
No 249
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.39 E-value=1.8 Score=29.48 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=32.6
Q ss_pred ceEEeCCCccc--chhhH--------HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy785 2 LEILDTAGTEQ--FTAMR--------DLYMKNGQGFILVYSITAQSTFNDLSDLREQILR 51 (112)
Q Consensus 2 ~~i~Dt~g~~~--~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 51 (112)
..+||..|++. ....+ ..++..+.+.++++|.++. +.+....|...+.+
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 35799999743 33333 4556678898999999887 44555566665554
No 250
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=81.28 E-value=3.7 Score=24.63 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=35.0
Q ss_pred chhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 13 FTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 13 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
.....+..++++..+|+++......+- --.| +|....+..++|+|+|--..
T Consensus 69 IKrrLReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai~~~~~PII~Vy~~~ 119 (189)
T 3hyn_A 69 LKPRLHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGIGTKGLPVIVIYPDY 119 (189)
T ss_dssp HHHHHHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHTTTTCCCEEEEETTC
T ss_pred HHHHHHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHHHhcCCcEEEEECCc
Confidence 345666678899999999987665542 2234 66665545789999887543
No 251
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=80.75 E-value=6.4 Score=25.09 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=36.3
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLE 70 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~ 70 (112)
+-|+|||+...... .......+|.+++|...... +...+...+..+.+. +.+ .-+|.|+.|..
T Consensus 216 ~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 216 LVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp EEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred EEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 45899997543221 22344679999999886432 333444444444442 233 23677999864
No 252
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=79.77 E-value=2.7 Score=25.13 Aligned_cols=72 Identities=4% Similarity=0.011 Sum_probs=42.0
Q ss_pred HHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCC
Q psy785 17 RDLYMKNGQGFILVYSITA---QSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFAC 89 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 89 (112)
+...+..+|++|++....+ +..+++.-+|+.+......-.++|+.+++.=.-... .......++......+.
T Consensus 61 l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G-g~~a~~~Lr~vl~~lg~ 135 (190)
T 3u7r_A 61 LKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG-AALAQARLKNDLLHVGT 135 (190)
T ss_dssp HHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT-THHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh-HHHHHHHHHHHHHHcCC
Confidence 3446789999999977654 456777777765322222236789998875432221 11223445555555564
No 253
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=77.19 E-value=3.6 Score=27.39 Aligned_cols=48 Identities=19% Similarity=-0.031 Sum_probs=32.8
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
...|++++.||+|... .++..... ....++++|+..+.|++.+.+...
T Consensus 248 ~~~p~i~v~nKid~~~-----~eele~l~--~~~~~~~is~~~e~gLd~Li~~~y 295 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS-----IEELELLY--RIPNAVPISSGQDWNLDELLQVMW 295 (376)
T ss_dssp EEECEEEEEECGGGSC-----HHHHHHHT--TSTTEEECCTTTCTTHHHHHHHHH
T ss_pred hccceEEEEecccccC-----HHHHHHHh--cccchhhhhhhhcccchhHHHHHH
Confidence 3579999999999643 22222221 123678899999999998887654
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.92 E-value=15 Score=24.94 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=44.8
Q ss_pred ceEEeCCCcccch-hhHHh-----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEeeCCCCCCccc
Q psy785 2 LEILDTAGTEQFT-AMRDL-----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP-MVLVGNKCDLEEERV 74 (112)
Q Consensus 2 ~~i~Dt~g~~~~~-~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~D~~~~~~ 74 (112)
+-|+||||..... .+... ....++.+++|+|.......- .....+.. ..+ .-+|.||.|......
T Consensus 186 ~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~~~~g 257 (433)
T 2xxa_A 186 VLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGDARGG 257 (433)
T ss_dssp EEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSSSCCT
T ss_pred EEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCCccHH
Confidence 5689999965432 12211 234789999999986542221 11222221 133 335899999753221
Q ss_pred ccHHHHHHHHHHhCCcEEEeec
Q psy785 75 VGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.........+.|+.++..
T Consensus 258 ----~~l~i~~~~~~Pi~~iG~ 275 (433)
T 2xxa_A 258 ----AALSIRHITGKPIKFLGV 275 (433)
T ss_dssp ----HHHHHHHHHCCCEEEEEC
T ss_pred ----HHHHHHHHHCCCeEEEec
Confidence 223455556776655543
No 255
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=75.76 E-value=13 Score=23.60 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=39.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~ 71 (112)
+-|+|||....... .......+|++++|+.... .+...+......+.+. .....=+|.|+.+...
T Consensus 204 ~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 204 LVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp EEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred EEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 45899997543321 2334567999999998754 3444444444555442 1233456789998643
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.30 E-value=12 Score=23.81 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=44.3
Q ss_pred ceEEeCCCcccchh--hH--Hhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFTA--MR--DLYMK--NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-|.||+|...... +. ...+. ..+.+++++|.+.. .+.+..+...+. .-+. .-++.||.|.....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~~-~giVltk~D~~~~~-- 255 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVPV-NQYIFTKIDETTSL-- 255 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSCC-CEEEEECTTTCSCC--
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCCC-CEEEEeCCCcccch--
Confidence 46899999764321 11 12222 36788889987643 223333322221 1122 33456999975322
Q ss_pred cHHHHHHHHHHhCCcEEEee
Q psy785 76 GKEQGASLARAFACTFLETS 95 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~S 95 (112)
..........+.|+..++
T Consensus 256 --g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 --GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --HHHHHHHHTCSCCCSEEC
T ss_pred --hHHHHHHHHHCcCEEEEE
Confidence 234455666787776655
No 257
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=74.90 E-value=15 Score=25.65 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=33.4
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEee--cCCCCChhHHhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETS--AKAKVNSWLCVEC 108 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~~~~~ 108 (112)
.++|++|..|+.....+.+ .+..+++|.+.|.+...+. ++=|.|-.++-+.
T Consensus 359 fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~ 411 (543)
T 3do6_A 359 FNLPVVVALNRFSTDTEKE--IAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKA 411 (543)
T ss_dssp TTCCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEechhhccchhHHHHHHH
Confidence 6799999999997643332 4567788999998765443 3334454444433
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.14 E-value=20 Score=25.04 Aligned_cols=89 Identities=15% Similarity=0.045 Sum_probs=46.5
Q ss_pred ceEEeCCCcccchh-hH---Hhh---c-----ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTA-MR---DLY---M-----KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~---~~~---~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-+.||+|...... +. ... . ...+-+++++|.+.. +.++.+ ..+.+. .++. .++.||.|
T Consensus 378 vVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a----k~f~~~---~~it-gvIlTKLD 449 (503)
T 2yhs_A 378 VLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA----KLFHEA---VGLT-GITLTKLD 449 (503)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH----HHHHHH---TCCS-EEEEECGG
T ss_pred EEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH----HHHHhh---cCCC-EEEEEcCC
Confidence 45789999743211 11 111 1 136788999997654 233322 222221 2233 46799998
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhH
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKAKVNSWL 104 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 104 (112)
-.. + ......+....+.++.++. +|.++++
T Consensus 450 ~ta-k---gG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTA-K---GGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GCS-C---CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc-c---ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 532 2 1234455667788887754 3444443
No 259
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=73.42 E-value=12 Score=22.22 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=43.0
Q ss_pred ceEEeCCCcccch----hhHHhhcccCC-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQFT----AMRDLYMKNGQ-GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~~----~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~ 75 (112)
+-++|+||.-... ..........+ .++++.... ..+...+...+..+.+ .+.+++ +|.|+.+... ..
T Consensus 111 ~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~~--~~ 183 (224)
T 1byi_A 111 WVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPPG--KR 183 (224)
T ss_dssp EEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSCC--TT
T ss_pred EEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCch--hh
Confidence 4588998643210 11122222222 467777663 3555555555555542 345644 6789998532 22
Q ss_pred cHHHHHHHHHHhCCcEEE
Q psy785 76 GKEQGASLARAFACTFLE 93 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~ 93 (112)
..+....+.+.++.+++.
T Consensus 184 ~~~~~~~l~~~~~~~vl~ 201 (224)
T 1byi_A 184 HAEYMTTLTRMIPAPLLG 201 (224)
T ss_dssp HHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 233334444556766653
No 260
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=71.20 E-value=18 Score=23.27 Aligned_cols=85 Identities=15% Similarity=0.115 Sum_probs=46.9
Q ss_pred ceEEeCCCcccchh-hH------Hhhc-----ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 2 LEILDTAGTEQFTA-MR------DLYM-----KNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~------~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+-+.||||...... +. ...+ ..++.+++++|.+... .++.. ..+.+. .++. -+|.||.|
T Consensus 189 vvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a----~~~~~~---~~i~-gvVlTk~D 260 (306)
T 1vma_A 189 VVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA----KIFKEA---VNVT-GIILTKLD 260 (306)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH----HHHHHH---SCCC-EEEEECGG
T ss_pred EEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH----HHHHhc---CCCC-EEEEeCCC
Confidence 46899999643221 11 1111 2478999999986432 22222 222221 2233 34579999
Q ss_pred CCCcccccHHHHHHHHHHhCCcEEEeecCC
Q psy785 69 LEEERVVGKEQGASLARAFACTFLETSAKA 98 (112)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 98 (112)
-.... ..+.......+.|+.+++.-.
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~Ge 286 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGVGE 286 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEECSS
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeCCC
Confidence 64322 224566777888888876543
No 261
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=68.96 E-value=22 Score=23.44 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=22.4
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCC
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITA 35 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 35 (112)
+-|+|||..-. ......+..+|.++++...+.
T Consensus 247 ~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~~ 278 (398)
T 3ez2_A 247 FILVDSGPHLD--AFLKNALASANILFTPLPPAT 278 (398)
T ss_dssp EEEEEECSCCS--HHHHHHHHHCSEEEEEECCSH
T ss_pred EEEEeCCCCcc--HHHHHHHHHCCEEEEEecCch
Confidence 46899996542 234445668999999998754
No 262
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=68.31 E-value=10 Score=22.60 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=41.8
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--DTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
...+..+|++|+.....+..---.++.|+..+.... ...++|+.++++---... .......++......|+.++
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g-~~~a~~~Lr~il~~lg~~~v 143 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG-GARAQNHLRQSLVFLDAYVL 143 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC-SHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc-cHHHHHHHHHHHHHcCCEEc
Confidence 345779999999988765432223344555454321 226799999887532211 11223455666666676443
No 263
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.85 E-value=25 Score=22.54 Aligned_cols=83 Identities=11% Similarity=0.003 Sum_probs=45.6
Q ss_pred eEEeCCCcccchh------------hHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 3 EILDTAGTEQFTA------------MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 3 ~i~Dt~g~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+.||+|...... +.+.....++.+++++|.+.....- .....+.+. .+ ..+++.||.|-.
T Consensus 188 ~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~---~~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 188 LFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEA---VG-LTGVIVTKLDGT 260 (304)
T ss_dssp EEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHH---HC-CSEEEEECTTSS
T ss_pred EEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHH---cC-CcEEEEECCccc
Confidence 4789998542211 1112334678888899986543222 222333322 12 346779999864
Q ss_pred CcccccHHHHHHHHHHhCCcEEEeec
Q psy785 71 EERVVGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.... .........+.|+.+++.
T Consensus 261 a~gg----~~l~i~~~~~~pi~~ig~ 282 (304)
T 1rj9_A 261 AKGG----VLIPIVRTLKVPIKFVGV 282 (304)
T ss_dssp CCCT----THHHHHHHHCCCEEEEEC
T ss_pred cccc----HHHHHHHHHCCCeEEEeC
Confidence 3221 223455667888887763
No 264
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=64.33 E-value=3.3 Score=28.84 Aligned_cols=23 Identities=4% Similarity=-0.098 Sum_probs=20.0
Q ss_pred CcEEEeecCCCCChhHHhhhhcc
Q psy785 89 CTFLETSAKAKVNSWLCVECTND 111 (112)
Q Consensus 89 ~~~~~~Sa~~~~~v~~~~~~l~~ 111 (112)
.|++..||++|.||.++++.+.+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~ 274 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVE 274 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHH
T ss_pred eEEEeeecccCCCHHHHHHHHHH
Confidence 38999999999999999988753
No 265
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=62.52 E-value=18 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=26.0
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEe
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 64 (112)
.+++||++|.++|...+++.-..+-=+ ... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiGy--A~a----lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIGF--MRA----MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHHH--HHH----TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehhh--Hhh----CCCeEEEEE
Confidence 467999999999987777654332211 111 568998874
No 266
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=62.31 E-value=28 Score=22.70 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=25.8
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHH
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLS 43 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 43 (112)
+-|+|||..- .......+..+|.++++...+ ..++..+.
T Consensus 156 ~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~ 194 (361)
T 3pg5_A 156 VIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFG 194 (361)
T ss_dssp EEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHH
T ss_pred EEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHH
Confidence 4689999543 344555667799999999874 44444433
No 267
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=61.87 E-value=19 Score=21.25 Aligned_cols=74 Identities=8% Similarity=0.086 Sum_probs=41.6
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV--KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
...+..+|++|+.....+..---.++.|+..+... ....++|+.++++---... .......++......++.++
T Consensus 67 ~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g-g~~a~~~Lr~~l~~lg~~v~ 142 (193)
T 3svl_A 67 AEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG-GARCQYHLRQILVFLDAMVM 142 (193)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc-hHHHHHHHHHHHHHCCCEEc
Confidence 34577899999998876543222333444444432 1236789998886432211 11224455666666776544
No 268
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=61.35 E-value=22 Score=20.69 Aligned_cols=72 Identities=7% Similarity=-0.032 Sum_probs=39.7
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV--KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF 91 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 91 (112)
.+..+|++++........--..+..|+..+... ....++|+.++++--.-..................|+.+
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~ 122 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLV 122 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEE
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEE
Confidence 356789999998876544334455666665431 123578988888854322211111223334444566643
No 269
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=60.54 E-value=20 Score=21.20 Aligned_cols=74 Identities=1% Similarity=-0.022 Sum_probs=40.3
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
.+..+|++|+...+-...--..++.|+..+.. .....++|+.++++--...............+....++.++.
T Consensus 75 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~ 151 (211)
T 1ydg_A 75 DLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTP 151 (211)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECC
T ss_pred HHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeC
Confidence 46689999999877543322234445544432 112356888887774332211222234555666666765554
No 270
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=60.34 E-value=13 Score=21.90 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=42.9
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---------cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHh
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV---------KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAF 87 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 87 (112)
....+..+|++|+....-+..---.++.|+..+... ....++|++++++--.. . ........+......
T Consensus 61 ~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g-~~~~~~~l~~~l~~~ 138 (192)
T 3fvw_A 61 AREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-S-PEEVFEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-c-hhHHHHHHHHHHHHc
Confidence 334577899999998876543333445666666542 12367898888765442 1 112235566666667
Q ss_pred CCcE
Q psy785 88 ACTF 91 (112)
Q Consensus 88 ~~~~ 91 (112)
|+..
T Consensus 139 G~~~ 142 (192)
T 3fvw_A 139 RMHL 142 (192)
T ss_dssp TCEE
T ss_pred CCee
Confidence 7643
No 271
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=60.17 E-value=14 Score=21.99 Aligned_cols=71 Identities=7% Similarity=0.060 Sum_probs=39.4
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCc
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACT 90 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 90 (112)
...+..+|++|+....-+..---.++.|+..+.. ....++|+.++++- .-...........+......|+.
T Consensus 80 ~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 80 TSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 3456789999999887664432334455554432 22367899888873 22211111112255566666764
No 272
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=59.74 E-value=23 Score=20.53 Aligned_cols=74 Identities=11% Similarity=-0.009 Sum_probs=40.1
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRV---KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
..+..+|++++....-...--..+..|+..+... ....++|+.++++--....................|+.++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~ 143 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVL 143 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 3467899999998875533222334444443321 1235688888887543222111223445556666676544
No 273
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=59.08 E-value=24 Score=20.51 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=41.6
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV---KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
.+..+|++++....-...--..+..|+..+... ....++|+.++++--...............+....|+.++.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~ 143 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVP 143 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECC
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeC
Confidence 467899999998875533222344454444221 12356888888775432111222344566667777876553
No 274
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=59.03 E-value=9.4 Score=22.33 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=41.3
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV--KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
.+..+|++|+....-...--..++.|+..+... ....++|+.++++--.-.. ........+.++...|+.++
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~~~~~~~l~~~l~~~g~~~~ 142 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-TARAQYHLRQTLVFLDVHPL 142 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-THHHHHHHHHHHHHHTCEEC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-cHHHHHHHHHHHHHcCCEEc
Confidence 467899999998765533223445566666432 1235789988887633221 11223445566666676443
No 275
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=57.75 E-value=5.6 Score=25.84 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=34.8
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhhhc
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVECTN 110 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 110 (112)
..+|+++ .+|-+.. +++..+.+++.+++++.+++.+...+..+..++.
T Consensus 79 ~~~P~II-ltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~ 126 (314)
T 1ko7_A 79 PETPAII-VTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLE 126 (314)
T ss_dssp TTCCCEE-ECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHH
Confidence 4566665 6666653 3456678888899999999998888877766653
No 276
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=56.98 E-value=17 Score=21.44 Aligned_cols=48 Identities=6% Similarity=0.095 Sum_probs=31.9
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEeeCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV------------KDTDDVPMVLVGNKC 67 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~ 67 (112)
.+..+|++|+....-...---.++.|+..+... ....+++++++.+--
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 467899999999886544333456777777432 123568888877653
No 277
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=56.87 E-value=38 Score=22.14 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=29.0
Q ss_pred ceEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy785 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR 51 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 51 (112)
+-++|||... .......+..+|.++++...+ +.+...+...+..+..
T Consensus 262 ~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~l~~~~~~l~~ 308 (373)
T 3fkq_A 262 EIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS-QLSNYKFMRAYESVVL 308 (373)
T ss_dssp EEEEECCCCC--CHHHHHHHTTCSEEEEEECCC-HHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC-chHHHHHHHHHHHHHH
Confidence 4589998432 233455678899999998764 4454444444444443
No 278
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=54.57 E-value=24 Score=19.12 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=24.3
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCCcEEEEee
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLRE-QILRVKDTDDVPMVLVGN 65 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~~p~ivv~n 65 (112)
..+++++++|++++.....+ .|.. ++.. ....++|++.|--
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s-----~wv~~EI~~-A~~~gkpIigV~~ 75 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRR-----DEILGAVDL-ARKSSKPIITVRP 75 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSH-----HHHHHHHHH-HTTTTCCEEEECC
T ss_pred CccccCCEEEEEeCCCcCCC-----hHHHHHHHH-HHHcCCCEEEEEc
Confidence 34678999999998765332 1221 2222 2236789777653
No 279
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=53.53 E-value=9.6 Score=26.75 Aligned_cols=51 Identities=16% Similarity=-0.031 Sum_probs=30.4
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEeecCCCCChhHHhhh
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNSWLCVEC 108 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 108 (112)
.++|++|..|+.....+.+ .+..+++|.+.|.....+=++=|.|-.++-+.
T Consensus 373 fGvpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~ 423 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARK 423 (557)
T ss_dssp TTCCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHH
Confidence 6899999999987643222 34556677766765443323334454444433
No 280
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=52.98 E-value=27 Score=20.43 Aligned_cols=70 Identities=9% Similarity=0.037 Sum_probs=39.2
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHH-HHHHHHHHhCCcEE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKE-QGASLARAFACTFL 92 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~ 92 (112)
.+..+|++++....-...--..++.|+..+.. ....++|+.++++ ....... .... ..+......|+.++
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~-~~~~gK~~~~~~t-gg~~~~~-~a~~~~l~~~l~~~g~~~v 136 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQ-FALAGKAALPLAT-GGSPAHV-LALDYGLRPVLHSMGVRHV 136 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT-TTTTTCEEEEEEE-ESSGGGG-GHHHHTHHHHHHTTTCSEE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccc-cccCCCEEEEEEE-CCCcchh-hHHHHHHHHHHHHcCCEec
Confidence 46789999999887654322233444444322 1235789999888 4332211 1122 35566666776544
No 281
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=51.89 E-value=18 Score=20.84 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=26.1
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
.+++||++|.++|..++++.....- .-... .++|++++..+
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~Ei--GyA~A----~gkPVv~~~~~ 115 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMEL--GYALS----QGKYVLLVIPD 115 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHH--HHHHH----TTCEEEEEECG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHH--HHHHH----CCCeEEEEEcC
Confidence 3679999999999766665443221 11111 56898887644
No 282
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=51.72 E-value=29 Score=20.31 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=36.3
Q ss_pred eEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh-------cCCCCCcEEEEeeC
Q psy785 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV-------KDTDDVPMVLVGNK 66 (112)
Q Consensus 3 ~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-------~~~~~~p~ivv~nK 66 (112)
++.|.....+... ....+..+|++|+.+.+-.-.---.++.|+.++... ....+++++++.+-
T Consensus 32 ~v~dL~~~~D~~~-~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 32 TWHPLVADFNVEQ-EQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp EEEECCTTCCHHH-HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred EEEECCCcccHHH-HHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 4455554222222 234567999999999875543223455677776432 12256788777654
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=51.46 E-value=44 Score=21.19 Aligned_cols=85 Identities=20% Similarity=0.107 Sum_probs=44.4
Q ss_pred ceEEeCCCcccc--hhhHHh----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccc
Q psy785 2 LEILDTAGTEQF--TAMRDL----YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75 (112)
Q Consensus 2 ~~i~Dt~g~~~~--~~~~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~ 75 (112)
+-++||||.... ..+... ..-.++.+++++|.... .+.+. ....+... - ...-+|.||.|.....
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~-~~~~~~~~---~-~i~givlnk~d~~~~~-- 253 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALS-VARAFDEK---V-GVTGLVLTKLDGDARG-- 253 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHH-HHHHHHHH---T-CCCEEEEECGGGCSSC--
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHH-HHHHHhhc---C-CCCEEEEECCCCCccH--
Confidence 468999975432 111110 11258888999997632 11111 11222221 1 1234678999965322
Q ss_pred cHHHHHHHHHHhCCcEEEeecC
Q psy785 76 GKEQGASLARAFACTFLETSAK 97 (112)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~Sa~ 97 (112)
..........+.|+.+++.-
T Consensus 254 --g~~~~~~~~~~~pi~~i~~g 273 (295)
T 1ls1_A 254 --GAALSARHVTGKPIYFAGVS 273 (295)
T ss_dssp --HHHHHHHHHHCCCEEEEC--
T ss_pred --HHHHHHHHHHCcCEEEEeCC
Confidence 23445666778888877643
No 284
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=51.13 E-value=15 Score=22.78 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=41.1
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV----KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF 91 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 91 (112)
...+..||++|+....-+..---.++.|+..+... ....++|+.++++--.. . ........+.+....++.+
T Consensus 93 ~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-g-g~~a~~~Lr~~l~~lg~~~ 168 (247)
T 2q62_A 93 RELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-Q-SFNAVNQMRILGRWMRMIT 168 (247)
T ss_dssp HHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-C-CCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-c-HHHHHHHHHHHHHHCCCEE
Confidence 34577899999999876643223344454444332 11257899888874321 1 1122345556666667643
No 285
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=50.17 E-value=34 Score=19.51 Aligned_cols=73 Identities=7% Similarity=0.053 Sum_probs=41.1
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
..+..+|++|+....-+..--..++.|+..+... ...++|+.++++--.-.. .......++......++.+++
T Consensus 59 ~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~-~~~gK~~~~~~~sgg~~g-~~~a~~~l~~~l~~~g~~~v~ 131 (174)
T 3gfs_A 59 QRVTKADAIVLLSPEYHSGMSGALKNALDFLSSE-QFKYKPVALLAVAGGGDG-GINALNNMRTVMRGVYANVIP 131 (174)
T ss_dssp HHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHH-HHTTCEEEEEEECCSTTC-SHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHh-hhCCCcEEEEEECCCChh-HHHHHHHHHHHHHHcCCEEec
Confidence 3467899999998876543222333444333211 125689888886443211 112245566777777876554
No 286
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=48.90 E-value=27 Score=21.85 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=32.1
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEeeCCC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DTDDVPMVLVGNKCD 68 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~nK~D 68 (112)
+..+|++|+.+.+-...---.++.|+..+.... ...+++++++.+--.
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 678999999999866432234567888775421 125688888876443
No 287
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=46.82 E-value=35 Score=19.70 Aligned_cols=74 Identities=3% Similarity=-0.123 Sum_probs=39.5
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRV---KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
..+..+|++++....-...--..+..|+..+... ....++|+.++++--.. .................|+.++.
T Consensus 64 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~ 140 (198)
T 3b6i_A 64 QELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVP 140 (198)
T ss_dssp GGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEEC
Confidence 4567899999998775433222334444443221 12356888888775432 11122233444555666765554
No 288
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=46.79 E-value=29 Score=21.12 Aligned_cols=71 Identities=11% Similarity=-0.055 Sum_probs=41.2
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
.+..+|++|+...+-...---.+..|+..+.... ...++|++++++--.- . ...............|+.++
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v 149 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQIL 149 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeee
Confidence 4678999999998765432234455665553211 2256788887764321 1 11234456666676787544
No 289
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=46.38 E-value=28 Score=20.71 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=31.7
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEeeCC
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--------DTDDVPMVLVGNKC 67 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~ 67 (112)
..+..+|++|+.+.+-...---.++.|+.++.... ...+++++++.+--
T Consensus 54 ~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G 110 (192)
T 3f2v_A 54 KLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLG 110 (192)
T ss_dssp HHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEES
T ss_pred HHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCC
Confidence 34679999999998755433334567888775421 12567877777543
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=44.49 E-value=61 Score=20.87 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=45.3
Q ss_pred ceEEeCCCcccchh-hHHh------h-----cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 2 LEILDTAGTEQFTA-MRDL------Y-----MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 2 ~~i~Dt~g~~~~~~-~~~~------~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
+-|+||||...... +... . -..+|.++++++.+.. .+.+.. +....... ...=+|.||.|-
T Consensus 194 ~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~----~~~~~~~~-~i~GvVltk~d~ 266 (320)
T 1zu4_A 194 LLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ----AEEFSKVA-DVSGIILTKMDS 266 (320)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH----HHHHTTTS-CCCEEEEECGGG
T ss_pred EEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH----HHHHhhcC-CCcEEEEeCCCC
Confidence 46899999665321 1110 1 1247899999998632 222222 22221111 123367899996
Q ss_pred CCcccccHHHHHHHHHHhCCcEEEeec
Q psy785 70 EEERVVGKEQGASLARAFACTFLETSA 96 (112)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 96 (112)
.... ..........+.|+.+++.
T Consensus 267 ~~~~----g~~~~~~~~~~~Pi~~i~~ 289 (320)
T 1zu4_A 267 TSKG----GIGLAIKELLNIPIKMIGV 289 (320)
T ss_dssp CSCT----THHHHHHHHHCCCEEEEEC
T ss_pred CCch----hHHHHHHHHHCcCEEEEeC
Confidence 4322 2344566677888877654
No 291
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=44.07 E-value=41 Score=19.56 Aligned_cols=42 Identities=5% Similarity=-0.051 Sum_probs=25.7
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
.++.||+++.++|...+++.....- .-... .++|++++.+-.
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~Ei--G~A~a----~gkPVi~~~~D~ 107 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEI--GVAYA----KGIPVVALYTDS 107 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHH--HHHHH----TTCCEEEECCCG
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHH--HHHHH----CCCEEEEEEcCc
Confidence 4779999999999775554433221 11122 568988765543
No 292
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=43.41 E-value=53 Score=20.96 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=28.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiil 135 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVI 135 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH---CCCCEEE
Confidence 3799999998776655667777888888775 3478775
No 293
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=42.79 E-value=32 Score=19.88 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=40.4
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEE
Q psy785 18 DLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLE 93 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (112)
...+..+|++|+....-...--..++.|+..+.. ...++|+.++.+ -.. . ........+.+....|+..+.
T Consensus 79 ~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~-G~~-~-~~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 79 SRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY-GGH-G-GSKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE-ETT-T-THHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe-CCc-c-hhhHHHHHHHHHHHCCCEEcc
Confidence 3457789999999988654322344556555432 235678887754 221 1 111234455566667875443
No 294
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=42.69 E-value=35 Score=20.20 Aligned_cols=80 Identities=9% Similarity=-0.011 Sum_probs=46.4
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----------------cCCCCCcEEEEeeCC--CCCCc-----cccc
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV----------------KDTDDVPMVLVGNKC--DLEEE-----RVVG 76 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----------------~~~~~~p~ivv~nK~--D~~~~-----~~~~ 76 (112)
.+..+|++|+....-+..---.++.|+..+... ....+++++++.+-- ..... ....
T Consensus 84 ~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~ 163 (212)
T 3r6w_A 84 ELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGENQAMNHA 163 (212)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTTGGGCCS
T ss_pred HHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCCCchhhh
Confidence 467899999999886644334556777777321 123567888877754 21111 0122
Q ss_pred HHHHHHHHHHhCCcEEEeecCCC
Q psy785 77 KEQGASLARAFACTFLETSAKAK 99 (112)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~Sa~~~ 99 (112)
....+....-.|+..+..-...|
T Consensus 164 ~~~l~~~l~~~G~~~~~~v~~~g 186 (212)
T 3r6w_A 164 DPWLRTALGFIGIDEVTVVAAEG 186 (212)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECC
T ss_pred HHHHHHHHHHCCCceeEEEEEec
Confidence 34555666667886555444333
No 295
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=42.00 E-value=25 Score=20.05 Aligned_cols=74 Identities=8% Similarity=-0.059 Sum_probs=39.3
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc----------CCCCCcEEEEeeCCCCCC-cccccHHHHHHHHHHh
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK----------DTDDVPMVLVGNKCDLEE-ERVVGKEQGASLARAF 87 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~ 87 (112)
..+..+|++|+...+-...--..++.|+..+.... ...++|+.++++--.-.. ...........++...
T Consensus 67 ~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~ 146 (184)
T 1rli_A 67 ERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFM 146 (184)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHc
Confidence 34678999999998755432223444555443210 114578888887332100 0111133445566667
Q ss_pred CCcEE
Q psy785 88 ACTFL 92 (112)
Q Consensus 88 ~~~~~ 92 (112)
|+.++
T Consensus 147 G~~~~ 151 (184)
T 1rli_A 147 GMSFK 151 (184)
T ss_dssp TCEEE
T ss_pred CCccc
Confidence 87544
No 296
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=41.93 E-value=51 Score=19.22 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=25.1
Q ss_pred cCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEE-eeC
Q psy785 23 NGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVLV-GNK 66 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv-~nK 66 (112)
++|.+++.-|..+.. ..+....++..+.+ .+.|+++| ||.
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GNH 73 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSE----AHLPTAYVPGPQ 73 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGG----GCSCEEEECCTT
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEECCCC
Confidence 799999999987654 44444445555543 23576654 454
No 297
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=40.76 E-value=42 Score=20.42 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=31.4
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEeeCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRV------------KDTDDVPMVLVGNKCD 68 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~D 68 (112)
.+..+|++|+....-...---.++.|+..+... ....+++++++.+--.
T Consensus 89 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 89 KVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 367899999999875543223456677776432 1125688888776543
No 298
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=40.50 E-value=71 Score=20.49 Aligned_cols=81 Identities=10% Similarity=0.129 Sum_probs=44.7
Q ss_pred eEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEeeCCCCCCcccccHHHHH
Q psy785 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV-LVGNKCDLEEERVVGKEQGA 81 (112)
Q Consensus 3 ~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~ 81 (112)
-++|+++......+ ...+..||.++++.... ..++..+.+....+.......+.++. ++.|+.+.. ....
T Consensus 167 v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~v~ 237 (314)
T 3fwy_A 167 VIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVD 237 (314)
T ss_dssp EEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHH
T ss_pred EeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hHHH
Confidence 46777754322111 12356789998888754 55677766666666544322333332 456765432 2335
Q ss_pred HHHHHhCCcEE
Q psy785 82 SLARAFACTFL 92 (112)
Q Consensus 82 ~~~~~~~~~~~ 92 (112)
+++++++.+++
T Consensus 238 ~~a~~~~~~~l 248 (314)
T 3fwy_A 238 RFCKETNFRRL 248 (314)
T ss_dssp HHHHHHTCCEE
T ss_pred HHHHHhCCeEE
Confidence 56666666554
No 299
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=39.70 E-value=53 Score=20.78 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiil 131 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAES---INLPIVL 131 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999997766555667777788888764 3578775
No 300
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=39.66 E-value=65 Score=19.79 Aligned_cols=36 Identities=8% Similarity=0.211 Sum_probs=20.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+++|++|++-....... +..+.+ .++|++++.+..+
T Consensus 64 ~~vdGiIi~~~~~~~~~-------~~~l~~----~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFR-------LQYLQK----QNFPFLALGRSHL 99 (294)
T ss_dssp TCCSEEEECSCCSSCHH-------HHHHHH----TTCCEEEESCCCC
T ss_pred CCCCEEEEeCCCCChHH-------HHHHHh----CCCCEEEECCCCC
Confidence 47999887643322211 222333 4689998877644
No 301
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=39.47 E-value=55 Score=20.76 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=27.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 131 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQE---VDIPIII 131 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999997766555667777788888764 3578775
No 302
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=38.97 E-value=56 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiil 131 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAA---STIPIIV 131 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE
Confidence 3899999988766555667777788888765 3578775
No 303
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=38.95 E-value=55 Score=20.89 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-......+-+.+..++..+.+. .++|+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 143 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVML 143 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999998766555667777788888764 3578775
No 304
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=38.56 E-value=58 Score=20.62 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=27.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-..-...+-+.+..++..+.+. .++|+++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiil 132 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEA---VELPLIL 132 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3799999887665555556777788888775 3578775
No 305
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=38.53 E-value=60 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=27.2
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+ .+-+.+..++..+.+. .++|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiil 128 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV---SPHPVYL 128 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh---CCCCEEE
Confidence 378999998776655 5667777788887764 3578665
No 306
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=38.38 E-value=64 Score=19.37 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=21.4
Q ss_pred eEEeCCCccc-chhhHHhh-cccCCEEEEEEeCCChhh
Q psy785 3 EILDTAGTEQ-FTAMRDLY-MKNGQGFILVYSITAQST 38 (112)
Q Consensus 3 ~i~Dt~g~~~-~~~~~~~~-~~~~d~~i~v~d~~~~~s 38 (112)
.+=|+-+... +..+.... -.++|.+++.-|..+...
T Consensus 10 ~iSDlH~~~~~~~~~l~~~~~~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 10 AIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260)
T ss_dssp EEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH
T ss_pred EEeecCCChHHHHHHHHHHHhcCCCEEEECCCCCCccC
Confidence 4556765432 23222222 247999999999987543
No 307
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=38.20 E-value=59 Score=20.79 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiil 147 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAA---TEVPICL 147 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999987765555667777788888764 3578775
No 308
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=38.18 E-value=58 Score=20.78 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=36.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA 86 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 86 (112)
.++|+++++-......+-+.+..++..+.+. .++|+++ -|-=. .....++.+...++++.
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil-Yn~P~-~tg~~l~~~~~~~La~~ 161 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQS---VDIPVLL-YNVPG-RTGCEISTDTIIKLFRD 161 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEE-EECHH-HHSCCCCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE-EeCch-hhCcCCCHHHHHHHHhc
Confidence 3799999997765555667777788888775 3578775 33000 01123345555566654
No 309
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=38.09 E-value=45 Score=18.01 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=38.2
Q ss_pred hcccCCEEEEEEeCCChhhH-H-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 20 YMKNGQGFILVYSITAQSTF-N-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~-~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
.+.+.|.+++.......... . .+..++..+... ..++++.++++--.- .........+..+..|+.++
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~g~~---~~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSYGWG---DGKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEESSS---CSHHHHHHHHHHHHTTCEEC
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEecCCC---CChHHHHHHHHHHHCCCEEE
Confidence 35678999998876432211 1 234455555442 367899998874321 12224555666666776443
No 310
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=38.07 E-value=56 Score=20.92 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=27.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 143 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISER---TDLGIVV 143 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE
Confidence 3899999997765555667777788887763 4578775
No 311
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=38.01 E-value=43 Score=19.50 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=37.1
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcE
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQIL---RVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTF 91 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~---~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 91 (112)
..+..+|++++....-...--..+..|+..+. ......++|+.++++--....................++.+
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~ 125 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLW 125 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEE
Confidence 35678999999987643221122334444332 11223578988888764321111112334444555556543
No 312
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=37.83 E-value=57 Score=20.67 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiil 132 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH---TDLPQIL 132 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTT---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3799999987765555667777788887664 4578775
No 313
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=37.83 E-value=59 Score=20.98 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-......+-+.+..++..+.+. .++|+++
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiil 153 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKA---ISIPIII 153 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHc---CCCCEEE
Confidence 3799999987665555566777888888775 3578776
No 314
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=37.54 E-value=60 Score=20.92 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 154 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEA---VAIPQIL 154 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---SCSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3799999997665555556777888888775 3578776
No 315
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=36.93 E-value=64 Score=20.53 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=27.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiil 138 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEA---TSIPMII 138 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE
Confidence 3789999987665555556777788888775 3578775
No 316
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=36.68 E-value=62 Score=21.17 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=27.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-......+-+.+..++..+.+. .++|+++
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiil 162 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVML 162 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999997766555667777888888764 3578775
No 317
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=36.54 E-value=67 Score=19.02 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=26.7
Q ss_pred eEEeCCCcccchhhHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy785 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQIL 50 (112)
Q Consensus 3 ~i~Dt~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 50 (112)
++.|.....+... ....+..||++|+...+-...---.++.|+.++.
T Consensus 51 ~~~dL~~~~d~~~-~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 51 RIVRADSDYDVKA-EVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp EEEESSSCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred EEEeCCccccHHH-HHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 4455543222222 2345678999999998865432234456666653
No 318
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=35.96 E-value=61 Score=20.75 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=27.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 146 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLL 146 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3799999987665555667777788887764 3688776
No 319
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=35.08 E-value=58 Score=18.83 Aligned_cols=43 Identities=7% Similarity=-0.121 Sum_probs=25.2
Q ss_pred HhhcccCCEEEEEEe---CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeC
Q psy785 18 DLYMKNGQGFILVYS---ITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66 (112)
Q Consensus 18 ~~~~~~~d~~i~v~d---~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK 66 (112)
...+++||++|.++| ...+++....+- .-... .++|++++.+.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEi--GyA~A----lgKPVi~l~~d 107 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEV--GCAAA----LNKMVLTFTSD 107 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHH--HHHHH----TTCEEEEECSC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHH--HHHHH----CCCEEEEEEcC
Confidence 345789999999998 333443322111 11111 56899988764
No 320
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=34.83 E-value=66 Score=18.45 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEe
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLET 94 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
.+.|++++|.-.... -..++..++++..+++++.+
T Consensus 34 AkrPvil~G~g~~~~----~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 34 AKRPLLMVGTLALDP----ELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp CSSEEEEECSTTCCH----HHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEECCCccch----hHHHHHHHHHHHhCCCEEEC
Confidence 568999999876532 13567788999999998754
No 321
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=34.42 E-value=34 Score=21.77 Aligned_cols=74 Identities=5% Similarity=-0.041 Sum_probs=40.2
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRV----KDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 17 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
+...+..||++|++...-+..---.++.|+..+... ....++|+.++++--. .. .......++.+....++..+
T Consensus 117 l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~-~g-g~~a~~~Lr~~l~~lg~~vv 194 (279)
T 2fzv_A 117 LRALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGG-SQ-SFNAVNTLRLLGRWMRMFTI 194 (279)
T ss_dssp HHHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSS-SC-CCHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCC-cc-HHHHHHHHHHHHHhcCcEEe
Confidence 334577899999998775543222333444444321 1125789888887422 11 11223455566666676433
No 322
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.27 E-value=80 Score=19.26 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=20.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
.++|++|++-....... +..+.+ .++|++++.+..+
T Consensus 65 ~~vdgiIi~~~~~~~~~-------~~~l~~----~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPR-------VRFMTE----RNMPFVTHGRSDM 100 (288)
T ss_dssp TCCSEEEEESCCTTCHH-------HHHHHH----TTCCEEEESCCCS
T ss_pred CCccEEEEecCCCCcHH-------HHHHhh----CCCCEEEECCcCC
Confidence 68999987632211111 222333 5689998877654
No 323
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=34.24 E-value=54 Score=21.09 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=34.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHH
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLA 84 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 84 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++ -| .... ++.+...+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil-Yn----~tg~-l~~~~~~~La 158 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEA---LDAPSII-YF----KDAH-LSDDVIKELA 158 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHH---SSSCEEE-EE----CCTT-SCTHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE-Ee----CCCC-cCHHHHHHHH
Confidence 3899999987765555666777788888764 3477654 66 2223 5555555554
No 324
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=34.17 E-value=54 Score=21.33 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiil 165 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGA---TALPLAI 165 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999887765555667777888888765 3578775
No 325
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=34.06 E-value=57 Score=20.77 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=27.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 131 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDA---IDIPIIV 131 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3899999987766555667777888888764 3578775
No 326
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=33.90 E-value=58 Score=20.61 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=25.6
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+ .+-+.+..++..+.+. .++|+++
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiil 128 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARI---SSHSLYI 128 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHH---CCSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 378888888666554 4556677777777664 3467664
No 327
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=33.76 E-value=1e+02 Score=20.37 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=32.0
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+.+.|++|+.--. ++++....++..+.+. .++|+++.|...-..
T Consensus 98 ~~~~~dG~VItHGT---DTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~~ 142 (358)
T 2him_A 98 HYDDYDGFVILHGT---DTMAYTASALSFMLEN---LGKPVIVTGSQIPLA 142 (358)
T ss_dssp HGGGCSEEEEECCS---TTHHHHHHHHHHHEET---CCSCEEEECCSSCTT
T ss_pred HHhcCCeEEEecCc---hHHHHHHHHHHHHHhc---CCCCEEEeCCCCCCc
Confidence 45678999998775 4566666666655432 568999999988754
No 328
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=33.73 E-value=54 Score=20.81 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
++|+++++-....+.+-+.+..++..+.+.. ++|+++
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~---~lPiil 133 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADAV---KLPVVL 133 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH---CSCEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE
Confidence 8999999976655556667777888887753 578775
No 329
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=33.65 E-value=56 Score=21.04 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=27.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 155 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEA---IGVPVML 155 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCcEEE
Confidence 3799999987765555667777888888775 3578775
No 330
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=33.62 E-value=56 Score=20.73 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-....+.+-+.+..++..+.+.. +.|+++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~---~lPiil 135 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET---GSNMIV 135 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH---CCCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE
Confidence 38999999977665556677777888887653 468664
No 331
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.35 E-value=81 Score=19.02 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=29.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEe
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~ 64 (112)
.++|++.+.++.....+...+......+.+.....++|+++-|
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 4788888877887777777788888887764321256766644
No 332
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=33.06 E-value=61 Score=20.47 Aligned_cols=38 Identities=5% Similarity=0.102 Sum_probs=26.7
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+ .+-+.+..++..+.+. .++|+++
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiil 127 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSA---VSIPVFL 127 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 378998888766555 5666777788887764 3577665
No 333
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=32.74 E-value=59 Score=17.30 Aligned_cols=67 Identities=6% Similarity=-0.080 Sum_probs=38.4
Q ss_pred cccCCEEEEEEeCCChhh-HH-HHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEE
Q psy785 21 MKNGQGFILVYSITAQST-FN-DLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFL 92 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s-~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 92 (112)
+..+|++++......... -. .+..++..+.. ...++|+.++++--.- .........+.....|+.++
T Consensus 44 l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g~~---~~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 44 VASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYGWG---SGEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEESSC---CSHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecCCC---CchHHHHHHHHHHHCCCEEc
Confidence 567899999887643221 11 24455555533 2357899998874321 12234555666666777554
No 334
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=32.04 E-value=60 Score=20.73 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+.. .++|+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~~lPiil 143 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA--DGLPMVV 143 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--TTCCEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC--CCCCEEE
Confidence 38999999977665556677778888887653 2378775
No 335
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=30.75 E-value=1.1e+02 Score=19.93 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=31.8
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+.+.|++|+..-. ++++....++..+.. ..++|+++.|...-..
T Consensus 70 ~~~~~dG~VItHGT---DTmeeTA~~Ls~ll~---~~~kPVVlTGAqrP~~ 114 (328)
T 1wls_A 70 EVWEYDGIVITHGT---DTMAYSASMLSFMLR---NPPIPIVLTGSMLPIT 114 (328)
T ss_dssp HTTTCSEEEEECCG---GGHHHHHHHHHHHEE---SCSSEEEEECCSSCTT
T ss_pred HhccCCeEEEEcCC---chHHHHHHHHHHHHh---CCCCCEEEECCCCCCC
Confidence 45678999998764 567776666654332 2568999999988754
No 336
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=30.11 E-value=90 Score=18.55 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=40.1
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CCCCCcEEEEeeCCCCCCc-----ccccHHHHHH
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DTDDVPMVLVGNKCDLEEE-----RVVGKEQGAS 82 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~ 82 (112)
.+..+|++|+....-...---.++.|+..+.... ...+++++++.+--.-... ........+.
T Consensus 89 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~l~~ 168 (211)
T 3p0r_A 89 QFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVEMAVKYVAS 168 (211)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGCBSHHHHHH
T ss_pred HHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchhHHHHHHHH
Confidence 4678999999998866433234556777664321 1246787777754322111 1223444555
Q ss_pred HHHHhCCc
Q psy785 83 LARAFACT 90 (112)
Q Consensus 83 ~~~~~~~~ 90 (112)
...-.|+.
T Consensus 169 ~l~~~G~~ 176 (211)
T 3p0r_A 169 MMGFFGAT 176 (211)
T ss_dssp HHHHTTCC
T ss_pred HHHhCCCC
Confidence 56656763
No 337
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=29.74 E-value=84 Score=18.48 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=9.6
Q ss_pred hcccCCEEEEEEeCC
Q psy785 20 YMKNGQGFILVYSIT 34 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~ 34 (112)
.+.++|+++.++|..
T Consensus 127 mvd~sD~liavyDg~ 141 (181)
T 2nx2_A 127 FIDKSDGLLLLYDPE 141 (181)
T ss_dssp HHHHSSEEEEECCTT
T ss_pred HHHHCCEEEEEEcCC
Confidence 355677777777653
No 338
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.57 E-value=84 Score=18.04 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=43.4
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh------------cCCCCCcEEEEeeCCCCCCc--ccccHHHHHHHH
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRV------------KDTDDVPMVLVGNKCDLEEE--RVVGKEQGASLA 84 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~------------~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~ 84 (112)
..+..+|++|+...+-...--..++.|+..+... ....++|++++++--..... ........+.+.
T Consensus 82 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l 161 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFL 161 (201)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHH
Confidence 3467899999998876543223456677777531 11356888888764332111 111234455666
Q ss_pred HHhCCcEEE
Q psy785 85 RAFACTFLE 93 (112)
Q Consensus 85 ~~~~~~~~~ 93 (112)
...|+..+.
T Consensus 162 ~~~G~~~~~ 170 (201)
T 1t5b_A 162 GFIGITDVN 170 (201)
T ss_dssp HHTTCCCEE
T ss_pred hhcCcceeE
Confidence 667775443
No 339
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=29.54 E-value=53 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEee
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n 65 (112)
++|+++++-......+-+.+..++..+.+.. ++|+++ -|
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiil-Yn 144 (316)
T 3e96_A 106 GADAVMIHMPIHPYVTAGGVYAYFRDIIEAL---DFPSLV-YF 144 (316)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHHH---TSCEEE-EE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC---CCCEEE-Ee
Confidence 7999998866555556677778888887753 478766 45
No 340
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=35.30 E-value=12 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=26.6
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEeeC
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--DTDDVPMVLVGNK 66 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK 66 (112)
..+..+|++|+.....+..---.++.|+..+.... ...++|+.++++-
T Consensus 69 ~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 34678999999987655432222333433333210 1256788877753
No 341
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=27.98 E-value=1.3e+02 Score=19.60 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.9
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+.+.|++|+..-. ++++....++..+.. .++|+++.|...-..
T Consensus 76 ~~~~~dG~VItHGT---DTmeeTA~~Ls~~l~----~~kPVVlTGAmrP~~ 119 (326)
T 1nns_A 76 DCDKTDGFVITHGT---DTMEETAYFLDLTVK----CDKPVVMVGAMRPST 119 (326)
T ss_dssp HGGGCSEEEEECCS---SSHHHHHHHHHHHCC----CCSCEEEECCSSCTT
T ss_pred HhhcCCcEEEEcCc---hhHHHHHHHHHHhcC----CCCCEEEeCCCCCCc
Confidence 34445899888765 455665566655542 568999999988754
No 342
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=27.85 E-value=84 Score=20.60 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=35.4
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHh-hcCCCCCcEEEEeeCCCCCCcccccHHHHHHH
Q psy785 22 KNGQGFILVYSITAQ-STFNDLSDLREQILR-VKDTDDVPMVLVGNKCDLEEERVVGKEQGASL 83 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 83 (112)
.++|+++++-..... .+-+.+..++..+.+ . .++|+++ -|-= .....++.+...++
T Consensus 117 ~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa---~~lPiil-Yn~P--~tg~~l~~e~~~~L 174 (344)
T 2hmc_A 117 VGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAA---PEIPAVI-YNSP--YYGFATRADLFFAL 174 (344)
T ss_dssp HTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHS---TTSCEEE-EEBG--GGTBCCCHHHHHHH
T ss_pred cCCCEEEECCCccCCCCCHHHHHHHHHHHHhhC---CCCcEEE-EecC--ccCCCcCHHHHHHH
Confidence 389999998776655 566777778888766 3 4578774 4422 12233455556666
No 343
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=27.41 E-value=92 Score=17.82 Aligned_cols=45 Identities=9% Similarity=-0.028 Sum_probs=29.1
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
.+.+.|.+++.+.+-...-...+..|+..+ ...+++++++++---
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~ 128 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSGG 128 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECSS
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecCC
Confidence 356889999999875433223344555443 336788888888653
No 344
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=26.80 E-value=1.1e+02 Score=18.47 Aligned_cols=76 Identities=9% Similarity=0.127 Sum_probs=42.3
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc------------CC-CCCcEEEEeeCCCCCCcc------cccHHHH
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVK------------DT-DDVPMVLVGNKCDLEEER------VVGKEQG 80 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~------------~~-~~~p~ivv~nK~D~~~~~------~~~~~~~ 80 (112)
.+..+|++|+....-...---.++.|+..+.... .. .+++++++.+--.-.... .......
T Consensus 91 ~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~~~~~~~~l 170 (223)
T 3u7i_A 91 QFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTDVEYSHKYL 170 (223)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHHTCHHHHHH
T ss_pred HHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccchHHHHHHHH
Confidence 4678999999998865433334566777665421 12 457777777644322111 1112334
Q ss_pred HHHHHHhCCcEEEee
Q psy785 81 ASLARAFACTFLETS 95 (112)
Q Consensus 81 ~~~~~~~~~~~~~~S 95 (112)
+....-.|+..+..-
T Consensus 171 ~~~l~~~G~~~~~~i 185 (223)
T 3u7i_A 171 KAMFNFLGIEDYQIV 185 (223)
T ss_dssp HHHHHHHTCCEEEEE
T ss_pred HHHHHHCCCceeEEE
Confidence 455555687655443
No 345
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=26.30 E-value=49 Score=19.40 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.3
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEe
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLET 94 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
...|++++|. .-. ....++..++++. ++|++.+
T Consensus 35 AkRPvIl~Gg-v~~----~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 35 AKRPLLIVGP-DMT----DEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp CSSEEEEECS-CCC----HHHHHHHHHHHTS-SSEEEEE
T ss_pred CCCCEEEECC-CCC----ccHHHHHHHHHHc-CCCEEEc
Confidence 5689999999 632 1224567788888 9998865
No 346
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=26.16 E-value=1e+02 Score=20.64 Aligned_cols=49 Identities=4% Similarity=-0.107 Sum_probs=32.2
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEeeCC
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK--------DTDDVPMVLVGNKC 67 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~ 67 (112)
..+..+|++|+.+..-...---.++.|+..+.... ...+++++++.+--
T Consensus 288 ~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g 344 (413)
T 3l9w_A 288 EALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTG 344 (413)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECS
T ss_pred HHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCC
Confidence 35678999999998865433334567888874321 12567888777643
No 347
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=25.46 E-value=1.3e+02 Score=19.68 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=29.4
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 21 MKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 21 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.+.|++|+..-. ++++....++..+.. .++|+++.|...-..
T Consensus 88 ~~~~dGvVItHGT---DTm~~TA~~L~~~l~----~~kPVVlTGa~rp~~ 130 (337)
T 4pga_A 88 SNDVDGIVITHGT---DTLEETAYFLNLVQK----TDKPIVVVGSMRPGT 130 (337)
T ss_dssp CTTCSEEEEECCS---TTHHHHHHHHHHHCC----CCSCEEEECCSSCTT
T ss_pred ccCCCeEEEECCC---ccHHHHHHHHHHHcC----CCCCEEEeCCCCCCC
Confidence 3568898888764 455565566555442 568999999887654
No 348
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.55 E-value=82 Score=16.28 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=20.8
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|.+++=++..+.+.++-+ ..+.+.......|++++.+..+
T Consensus 55 ~~dlvi~d~~~~~~~g~~~~----~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREVL----AEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp CCSEEEECSSCSSSCHHHHH----HHHHHSTTGGGSCEEEEESCCC
T ss_pred CCcEEEEecCCCcccHHHHH----HHHHcCcccccccEEEEecCCc
Confidence 45665555544443444332 3334322114578888766554
No 349
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=24.46 E-value=76 Score=20.15 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=27.5
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQ-STFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
-++|+++++-..... .+-+.+..++..+.+.....++|+++
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil 138 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV 138 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 379999998766555 46677777888887653100578775
No 350
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A 1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A* 2jk0_A
Probab=24.28 E-value=1.4e+02 Score=19.44 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=28.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|++|+..-. ++++....++..+.+ .++|+++.|...-..
T Consensus 85 ~~dG~VItHGT---DTmeeTA~~Ls~~l~----~~kPVVlTGAmrP~~ 125 (327)
T 1o7j_A 85 DVDGVVITHGT---DTVEESAYFLHLTVK----SDKPVVFVAAMRPAT 125 (327)
T ss_dssp TCCEEEEECCS---TTHHHHHHHHHHHCC----CCSCEEEECCSSCTT
T ss_pred CCCEEEEecCc---hhHHHHHHHHHHHhC----CCCCEEEeCCCCCCC
Confidence 47888888764 455665566555543 568999999888754
No 351
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=23.97 E-value=1.4e+02 Score=19.47 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=30.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|++|+..-. ++++....++..+.+ .++|+++.|...-..
T Consensus 82 ~~dG~VItHGT---DTmeeTA~~Ls~~l~----~~kPVVlTGAmrP~~ 122 (331)
T 1agx_A 82 SVNGVVITHGT---DTMEETAFFLNLVVH----TDKPIVLVGSMRPST 122 (331)
T ss_dssp TCCEEEEECCG---GGHHHHHHHHHHHCC----CSSCEEEECCSSCTT
T ss_pred CCCEEEEecCc---chHHHHHHHHHHHcC----CCCCEEEeCCCCCCC
Confidence 57899988764 567776666665543 568999999988754
No 352
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=23.88 E-value=89 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=7.6
Q ss_pred EEEEEEeCCChhh
Q psy785 26 GFILVYSITAQST 38 (112)
Q Consensus 26 ~~i~v~d~~~~~s 38 (112)
-++++||+++...
T Consensus 4 ~~lV~YDI~~~kr 16 (101)
T 2ivy_A 4 LYLIFYDITDDNL 16 (101)
T ss_dssp EEEEEEEECCHHH
T ss_pred EEEEEEeCCChHH
Confidence 4566677765533
No 353
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.71 E-value=1.6e+02 Score=20.17 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=30.3
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|++|+..-. ++++....++..+.. .++|+++.|...-..
T Consensus 167 ~~DG~VItHGT---DTMeeTA~~Lsl~l~----~~KPVVlTGAqrP~~ 207 (435)
T 2d6f_A 167 GADGVVVAHGT---DTMHYTSAALSFMLR----TPVPVVFTGAQRSSD 207 (435)
T ss_dssp TCSEEEEECCT---TTHHHHHHHHHHHEE----CSSCEEEECCSSCTT
T ss_pred CCCeEEEEcCc---chHHHHHHHHHHHhC----CCCCEEEECCCCCCC
Confidence 78999998774 456666666666652 568999999988754
No 354
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.70 E-value=96 Score=16.73 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=22.8
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|++++=+...+.+.++-+ ..+.+......+|++++....+
T Consensus 51 ~~dlii~D~~l~~~~g~~~~----~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 51 RPDLIISDVLMPEMDGYALC----RWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHSTTTTTSCEEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhCCCcCCCCEEEEECCCC
Confidence 46766665555444444433 3344432235688888776554
No 355
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=23.50 E-value=1.4e+02 Score=19.16 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=26.5
Q ss_pred cC-CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 23 NG-QGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 23 ~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
++ |+++++-..-.+.+-+.+..++..+.+. .++|+++
T Consensus 102 Ga~davlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiil 139 (311)
T 3h5d_A 102 GGFAAGLAIVPYYNKPSQEGMYQHFKAIADA---SDLPIII 139 (311)
T ss_dssp CCCSEEEEECCCSSCCCHHHHHHHHHHHHHS---CSSCEEE
T ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEE
Confidence 55 9999987665555556777788888764 3688775
No 356
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=23.08 E-value=1.6e+02 Score=19.22 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=29.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
.+.|++|+..-. ++++....++..+.. .++|+++.|...-..
T Consensus 87 ~~~dGvVItHGT---DTm~~TA~~L~~~l~----~~kPVVlTGa~rp~~ 128 (334)
T 3nxk_A 87 EGIDGVVITHGT---DTMEETAYFLNLTIK----SDKPVVLVGAMRPST 128 (334)
T ss_dssp TTCCEEEEECCS---TTHHHHHHHHHHHCC----CCSCEEEECCSSCTT
T ss_pred cCCCeEEEECCC---chHHHHHHHHHHHcC----CCCCEEEECCCCCCC
Confidence 578999988764 456666666655542 568999999887653
No 357
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=22.90 E-value=67 Score=20.27 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=25.7
Q ss_pred ccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQS-TFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+. +-+.+..++..+.+ ++|+++
T Consensus 87 ~Gadavlv~~P~y~~~~~~~~l~~~f~~va~-----~lPiil 123 (283)
T 2pcq_A 87 AGAMALLATPPRYYHGSLGAGLLRYYEALAE-----KMPLFL 123 (283)
T ss_dssp HTCSEEEECCCCTTGGGTTTHHHHHHHHHHH-----HSCEEE
T ss_pred cCCCEEEecCCcCCCCCCHHHHHHHHHHHhc-----CCCEEE
Confidence 3899999887765555 55667777777766 478765
No 358
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=22.41 E-value=1.1e+02 Score=17.14 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=34.9
Q ss_pred cCCEEEEEEeCCChh---hH----HHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcc---cccHHHHHHHHHHhCCcEE
Q psy785 23 NGQGFILVYSITAQS---TF----NDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER---VVGKEQGASLARAFACTFL 92 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~---s~----~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~ 92 (112)
.+|.+++.+..++.. +. ..+...+..+.+ .+.+++++....-..... ..-.+..++++.+.+++++
T Consensus 62 ~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~----~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~i 137 (190)
T 1ivn_A 62 QPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKA----ANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLL 137 (190)
T ss_dssp CCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHH----TTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHH----cCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEE
Confidence 689999999877642 22 233444444444 245555554321110000 0112234566777788777
Q ss_pred Ee
Q psy785 93 ET 94 (112)
Q Consensus 93 ~~ 94 (112)
..
T Consensus 138 D~ 139 (190)
T 1ivn_A 138 PF 139 (190)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 359
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.32 E-value=92 Score=16.04 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=20.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|.+++=++..+.+.++- ...+.+.......|++++....+
T Consensus 47 ~~dlvi~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~~s~~~~ 88 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYAL----CGHFRSEPTLKHIPVIFVSGYAP 88 (133)
T ss_dssp CCSEEEECSSCSSSCHHHH----HHHHHHSTTTTTCCEEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHH----HHHHHhCCccCCCCEEEEeCCCc
Confidence 4565555444444334433 23344432224678887776544
No 360
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.28 E-value=96 Score=16.23 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=19.8
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|++++=++..+.+.++- ...+.+.......|++++....+
T Consensus 59 ~~dlii~D~~l~~~~g~~~----~~~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 59 HPKLILLDINIPKMNGIEF----LKELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp CCSEEEEETTCTTSCHHHH----HHHHTTSGGGTTCEEEEEESCCC
T ss_pred CCCEEEEecCCCCCCHHHH----HHHHHcCccccCCcEEEEeCCCC
Confidence 3565555444333333332 33344332124578887766544
No 361
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.21 E-value=92 Score=15.97 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=19.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKC 67 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~ 67 (112)
..|.+++=+...+.+.++- ...+.+.....+.|++++....
T Consensus 46 ~~dlvllD~~~p~~~g~~~----~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 46 TPDLIVLXIMMPVMDGFTV----LKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp CCSEEEECSCCSSSCHHHH----HHHHHTSTTTTTSCEEEEESCC
T ss_pred CCCEEEEeccCCCCcHHHH----HHHHHhcccccCCCEEEEecCC
Confidence 4565554333333334432 2334433223467877765543
No 362
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=22.12 E-value=1.4e+02 Score=19.48 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|++|+..-. ++++....++..+.+ .++|+++.|...-..
T Consensus 85 ~~dG~VItHGT---DTmeeTA~~Ls~~l~----~~kPVVlTGAmrP~~ 125 (332)
T 2wlt_A 85 RIQGVVITHGT---DTLEESAYFLNLVLH----STKPVVLVGAMRNAS 125 (332)
T ss_dssp TCCEEEEECCS---SSHHHHHHHHHHHCC----CSSCEEEECCSSCTT
T ss_pred CCCEEEEecCc---hhHHHHHHHHHHHhC----CCCCEEEECCCCCCC
Confidence 57888888764 455555556555543 568999999888754
No 363
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.91 E-value=1e+02 Score=18.86 Aligned_cols=36 Identities=19% Similarity=0.598 Sum_probs=20.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+++|++|++-...... .+..+.+ .++|++++.+..+
T Consensus 67 ~~vdGiI~~~~~~~~~-------~~~~l~~----~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 67 RMVDAFILLYSKENDP-------IKQMLID----ESMPFIVIGKPTS 102 (295)
T ss_dssp TCCSEEEESCCCTTCH-------HHHHHHH----TTCCEEEESCCCS
T ss_pred CCcCEEEEcCcccChH-------HHHHHHh----CCCCEEEECCCCc
Confidence 5799998863222111 1222333 4689999887654
No 364
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=21.79 E-value=1.6e+02 Score=18.74 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=26.9
Q ss_pred ccCCEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQ--STFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-..... .+-+.+..++..+.+. .++|+++
T Consensus 108 ~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a---~~lPiil 147 (307)
T 3s5o_A 108 VGADAAMVVTPCYYRGRMSSAALIHHYTKVADL---SPIPVVL 147 (307)
T ss_dssp TTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH---CSSCEEE
T ss_pred cCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh---cCCCEEE
Confidence 379999998776543 3556777788888765 3578775
No 365
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=21.77 E-value=1.8e+02 Score=19.97 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=30.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~ 70 (112)
+.|++|+..-. ++++....++..+.+ ..++|+++.|...-..
T Consensus 168 ~~DG~VItHGT---DTMeeTA~~Lsl~l~---~~~KPVVlTGAqrP~~ 209 (438)
T 1zq1_A 168 GDYGVVVAHGT---DTMGYTAAALSFMLR---NLGKPVVLVGAQRSSD 209 (438)
T ss_dssp TCSEEEEECCS---SSHHHHHHHHHHHEE---SCCSCEEEECCSSCTT
T ss_pred CCCeEEEecCc---hhHHHHHHHHHHHHh---CCCCCEEEeCCCCCCC
Confidence 78999988775 455666666666653 2568999999988754
No 366
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.53 E-value=57 Score=20.66 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=25.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~iv 62 (112)
.++|+++++-....+.+-+.+..++..+.+. .++|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiil 132 (291)
T 3a5f_A 95 IGVDGLLVITPYYNKTTQKGLVKHFKAVSDA---VSTPIII 132 (291)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHC-CTGGG---CCSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEE
Confidence 3799999987765555556666676666553 4578764
No 367
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=21.47 E-value=1e+02 Score=17.17 Aligned_cols=68 Identities=4% Similarity=-0.028 Sum_probs=34.7
Q ss_pred cCCEEEEEEeCCCh------hh-HHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCccc---ccHHHHHHHHHHhCCcEE
Q psy785 23 NGQGFILVYSITAQ------ST-FNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERV---VGKEQGASLARAFACTFL 92 (112)
Q Consensus 23 ~~d~~i~v~d~~~~------~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~ 92 (112)
++|.+++.+..++. +. ...+...+..+.+ .+.++++++...--..... .-.....+++++.+++++
T Consensus 66 ~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~~~~----~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~v 141 (185)
T 3hp4_A 66 EPTHVLIELGANDGLRGFPVKKMQTNLTALVKKSQA----ANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLM 141 (185)
T ss_dssp CCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEeecccCCCCcCHHHHHHHHHHHHHHHHH----cCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEE
Confidence 78999999876552 11 2233444444444 3456666553221100011 112334567777888777
Q ss_pred Ee
Q psy785 93 ET 94 (112)
Q Consensus 93 ~~ 94 (112)
..
T Consensus 142 d~ 143 (185)
T 3hp4_A 142 NF 143 (185)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 368
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.46 E-value=1.1e+02 Score=16.64 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=23.4
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 20 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
.|++.|+++++-. .+. .|++.+.+.....+..+.++.|.-|
T Consensus 74 rypqldvvvivtt-ddk-------ewikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 74 RYPQLDVVVIVTT-DDK-------EWIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp HCTTCCEEEEEEC-CCH-------HHHHHHHHHHHHTTCEEEEEEECSC
T ss_pred hCCCCcEEEEEec-CcH-------HHHHHHHHHHHhcCcEEEEEecCCC
Confidence 3678888887754 222 2433333333335677777776555
No 369
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.37 E-value=54 Score=17.04 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.3
Q ss_pred CCCcEEEE-eeCCCCC
Q psy785 56 DDVPMVLV-GNKCDLE 70 (112)
Q Consensus 56 ~~~p~ivv-~nK~D~~ 70 (112)
.++|++.+ .+|.+|-
T Consensus 56 ~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 56 SDIPVYEFEGTSVELG 71 (99)
T ss_dssp TTCCEEEECCCSCGGG
T ss_pred cCCCEEEeCCCHHHHH
Confidence 67897666 8888873
No 370
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=21.34 E-value=1.2e+02 Score=20.78 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=10.5
Q ss_pred HHHHHHhCCcEEEeecCC
Q psy785 81 ASLARAFACTFLETSAKA 98 (112)
Q Consensus 81 ~~~~~~~~~~~~~~Sa~~ 98 (112)
..++++++++++.+|-.+
T Consensus 387 k~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 387 KGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHCCeEEEEEcCC
Confidence 345566677666665544
No 371
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.31 E-value=96 Score=15.85 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=21.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
..|.+++-++..+.+.++-+ ..+.+.......|++++....+.
T Consensus 47 ~~dlii~D~~l~~~~g~~~~----~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLALV----KQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp CCSEEEEESBCSSSBHHHHH----HHHHHSCCSSCCEEEEEECC-CT
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhhhccCCCCEEEEECCcch
Confidence 45666665555544444332 33444322356777777666553
No 372
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=21.01 E-value=2.2e+02 Score=19.92 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.2
Q ss_pred CCCcEEEEeeCCCCCCcccccHHHHHHHHHHhCCcEEEe
Q psy785 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLET 94 (112)
Q Consensus 56 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (112)
.+.|+|++|.-.... . +.+.++++..+++++.+
T Consensus 214 a~rpvIl~G~g~~~~---~---~~l~~lae~~~~Pv~~t 246 (590)
T 1ybh_A 214 SKKPVLYVGGGCLNS---S---DELGRFVELTGIPVAST 246 (590)
T ss_dssp CSSEEEEECGGGTTC---H---HHHHHHHHHHCCCEEEC
T ss_pred CCCcEEEECcccccC---H---HHHHHHHHHhCCCEEEc
Confidence 468999999776432 1 67788999999998854
No 373
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.86 E-value=1.1e+02 Score=18.56 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=21.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCC
Q psy785 22 KNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDL 69 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~ 69 (112)
.++|++|++-...... .+..+.+ .++|++++.+..+-
T Consensus 68 ~~vdgiIi~~~~~~~~-------~~~~l~~----~~iPvV~~~~~~~~ 104 (292)
T 3k4h_A 68 RQIGGIILLYSRENDR-------IIQYLHE----QNFPFVLIGKPYDR 104 (292)
T ss_dssp TCCCEEEESCCBTTCH-------HHHHHHH----TTCCEEEESCCSSC
T ss_pred CCCCEEEEeCCCCChH-------HHHHHHH----CCCCEEEECCCCCC
Confidence 5789988754322211 1222333 46899998876643
No 374
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.76 E-value=1.1e+02 Score=16.18 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=22.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|++++=++..+.+.++- +..+.+.......|++++....+
T Consensus 52 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDL----FNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp CCSEEEEESCCSSSCHHHH----HHHHHTSTTTTTSCEEEEESSCC
T ss_pred CCCEEEEcCCCCCCCHHHH----HHHHHcCcccCCCCEEEEeCCCC
Confidence 4676666555544444433 33344422235688888776554
No 375
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.65 E-value=99 Score=15.74 Aligned_cols=22 Identities=9% Similarity=0.332 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEe
Q psy785 41 DLSDLREQILRVKDTDDVPMVLVG 64 (112)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~p~ivv~ 64 (112)
.+..++.++.+. +.++.++++.
T Consensus 37 elkkyleefrke--sqnikvlilv 58 (110)
T 2kpo_A 37 ELKKYLEEFRKE--SQNIKVLILV 58 (110)
T ss_dssp HHHHHHHHHTSS--TTSEEEEEEE
T ss_pred HHHHHHHHHHhh--ccCeEEEEEE
Confidence 444566555442 3555555443
No 376
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.58 E-value=1e+02 Score=19.71 Aligned_cols=59 Identities=7% Similarity=0.055 Sum_probs=34.8
Q ss_pred ccCCEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCCCCCcccccHHHHHHHHHH
Q psy785 22 KNGQGFILVYSIT---AQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA 86 (112)
Q Consensus 22 ~~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 86 (112)
.++|+++++-... ...+-+.+..++..+.+. .++|+++ -|-= . ....++.+...+++++
T Consensus 102 ~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a---~~lPiil-Yn~P-~-tg~~l~~~~~~~La~~ 163 (309)
T 3fkr_A 102 LGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA---IAIPIMV-QDAP-A-SGTALSAPFLARMARE 163 (309)
T ss_dssp TTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH---CSSCEEE-EECG-G-GCCCCCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHh---cCCCEEE-EeCC-C-CCCCCCHHHHHHHHhh
Confidence 3799999886543 233556677788888765 3578665 4421 1 2233445556666653
No 377
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=20.50 E-value=1.3e+02 Score=17.17 Aligned_cols=42 Identities=5% Similarity=0.028 Sum_probs=25.0
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..++.||+++..++..+..+.-.+ .-... .++|++++.++.+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~Ei----GyA~a----lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYEL----GRAVA----LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHH----HHHHH----TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHH----HHHHH----CCCEEEEEEcCCC
Confidence 357899999998874333222111 11122 5689999876653
No 378
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=20.41 E-value=1.6e+02 Score=17.92 Aligned_cols=34 Identities=6% Similarity=-0.166 Sum_probs=22.2
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy785 19 LYMKNGQGFILVYSITAQSTFNDLSDLREQILRV 52 (112)
Q Consensus 19 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 52 (112)
..+..||++|+.+..-...---.++.|+.++...
T Consensus 79 ~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~ 112 (218)
T 3rpe_A 79 ENYLWADTIIYQMPAWWMGEPWILKKYIDEVFTD 112 (218)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEEECChHhccCCHHHHHHHHHHHhc
Confidence 4567899999999875543223445676666443
No 379
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.29 E-value=1.1e+02 Score=16.10 Aligned_cols=23 Identities=9% Similarity=0.306 Sum_probs=12.5
Q ss_pred HHHHHhhcCCCCCcEEEEeeCCC
Q psy785 46 REQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 46 ~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
+..+.+.......|++++....+
T Consensus 70 ~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 70 MSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp HHHHHSSSTTTTCCEEEEETTCC
T ss_pred HHHHHhcccccCCCEEEEeCCCC
Confidence 33444422235688888765544
No 380
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=20.27 E-value=2e+02 Score=19.05 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=25.6
Q ss_pred ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCCcEEEE-eeCC
Q psy785 22 KNGQGFILVYSITAQ---STFNDLSDLREQILRVKDTDDVPMVLV-GNKC 67 (112)
Q Consensus 22 ~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv-~nK~ 67 (112)
.++|.+++.-|..+. ..++.+..++..+.. .+.|++++ ||.-
T Consensus 91 ~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~----~~~~~~~v~GNHD 136 (443)
T 2xmo_A 91 KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEK----NGTQVFVVPGNHD 136 (443)
T ss_dssp HTCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH----TTCEEEEECCTTT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEECCcCC
Confidence 468999999998653 234444444444432 35787666 6654
No 381
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=20.25 E-value=1.1e+02 Score=16.06 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=20.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEeeCCC
Q psy785 23 NGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68 (112)
Q Consensus 23 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D 68 (112)
..|.+++=+...+.+.++-+ ..+.+......+|++++....+
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~----~~lr~~~~~~~~pii~~t~~~~ 89 (136)
T 3t6k_A 48 LPDALICDVLLPGIDGYTLC----KRVRQHPLTKTLPILMLTAQGD 89 (136)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHSGGGTTCCEEEEECTTC
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHcCCCcCCccEEEEecCCC
Confidence 45665554444433344332 3333332224678887766544
Done!