RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy785
(112 letters)
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 190 bits (484), Expect = 9e-64
Identities = 38/101 (37%), Positives = 56/101 (55%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + D + + M G +++VYS+T + +F S+LR Q+ R + TDDVP+
Sbjct: 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI 109
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V ++G + A F C F+ETSA N
Sbjct: 110 ILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 190 bits (484), Expect = 1e-63
Identities = 49/101 (48%), Positives = 70/101 (69%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+ILDTAG E+F AMR+ YM+ G GF+LV++I + +FN++ L QILRVKD DD P+
Sbjct: 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNK DLE +R V + + ++ + + E SAK ++N
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 189 bits (483), Expect = 2e-63
Identities = 36/101 (35%), Positives = 62/101 (61%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+++DTAG ++++ Y + G+ILVYS+T+ +F + + ++L + +P+
Sbjct: 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL ERV+ E+G +LA ++ FLE+SAK
Sbjct: 115 MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 189 bits (483), Expect = 2e-63
Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP
Sbjct: 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 127 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 188 bits (481), Expect = 3e-63
Identities = 61/101 (60%), Positives = 78/101 (77%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+LEILDTAGTEQF +MRDLY+KNGQGFILVYS+ Q +F D+ +R+QI+RVK + VP+
Sbjct: 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DLE ER V +G +LA + C F+ETSAK+K
Sbjct: 112 ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 188 bits (480), Expect = 1e-62
Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP
Sbjct: 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 122
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 123 LLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 188 bits (480), Expect = 1e-62
Identities = 34/101 (33%), Positives = 59/101 (58%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L ++DTAG ++++ + ++ G++LVYS+T+ +F + L +++ VP+
Sbjct: 73 HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV 132
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNK DL ER V +G LA ++ TF+E+SA+
Sbjct: 133 VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL 173
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 186 bits (476), Expect = 2e-62
Identities = 48/101 (47%), Positives = 71/101 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
++ILDTAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP
Sbjct: 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DLE++R V E+ + A + ++ETSAK + N
Sbjct: 113 LLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 186 bits (474), Expect = 3e-62
Identities = 87/102 (85%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
MLEILDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM
Sbjct: 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFA-CTFLETSAKAKVN 101
+LVGNKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 112 ILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 183 bits (468), Expect = 3e-61
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVP 59
L+I DT G+ QF AM+ L + G FILVYSIT++ + +L + EQI +K D + +P
Sbjct: 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP 111
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++LVGNKCD R V + +LAR + C F+ETSAK N
Sbjct: 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 183 bits (466), Expect = 8e-61
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L++LDTAG E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LV NK DL R V ++QG +A + ++ETSAK
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 183 bits (466), Expect = 9e-61
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
L + D +RD ++ G F++V+S+T + +F+ + + ++ + D+P
Sbjct: 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 132
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++LVGNK DL R V E+G LA +C +ETSA N
Sbjct: 133 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 182 bits (465), Expect = 1e-60
Identities = 54/101 (53%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D++ REQI RVKD+DDVPM
Sbjct: 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM 129
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNKCDL R V +Q LA+++ F+ETSAK +
Sbjct: 130 VLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQG 169
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 181 bits (461), Expect = 2e-60
Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNK DL R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQG 151
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 181 bits (461), Expect = 3e-60
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQFTA-MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
L + D ++D ++ G F++V+S+T + +F+ + + ++ + D+P
Sbjct: 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP 111
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++LVGNK DL R V E+G LA +C +ETSA N
Sbjct: 112 VILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 181 bits (461), Expect = 3e-60
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 1 MLEILDTAGTEQF--TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDV 58
L ++DT E+ + ++ ++ G +++VYSI + +F S+LR Q+ R D V
Sbjct: 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHV 112
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P++LVGNK DL R V E+G + A F C F+ETSA + N
Sbjct: 113 PIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHN 155
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 180 bits (459), Expect = 1e-59
Identities = 54/101 (53%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD++DVPM
Sbjct: 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNKCDL R V +Q LAR++ F+ETSAK +
Sbjct: 113 VLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQG 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 178 bits (455), Expect = 6e-59
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+EILDTAG E R+ +M+ G+GF+LVY IT + +F ++ L+ + +K +V +
Sbjct: 77 SMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL 135
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+LVGNK DL+ R V E+G LA AC F E SA
Sbjct: 136 ILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC 172
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 178 bits (453), Expect = 1e-58
Identities = 40/102 (39%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP 59
L+I DT G+ QF AM+ L + G FILV+S+T++ + +L + + I+++K + +D+P
Sbjct: 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP 116
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++LVGNKCD +R V + ++A+ + C F+ETSAK N
Sbjct: 117 VMLVGNKCDE-TQREVDTREAQAVAQEWKCAFMETSAKMNYN 157
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 174 bits (443), Expect = 5e-57
Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL R V +G + A F C F+ETSA + N
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 165 bits (421), Expect = 6e-54
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI-LRVKDTD-DV 58
L ++DTA + + Y+ F++VYS+ ++ +F+ S E + L K+T +
Sbjct: 70 HLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKV 100
P +L+GNK D+ + R V K +G +LA F C F E SA
Sbjct: 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDF 170
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 162 bits (413), Expect = 9e-53
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ + G ++ + D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK DL R V +G + A F F+ETSA + N
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 156 bits (397), Expect = 2e-50
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L I D G + + + V+S+ + +F + + ++ ++ +VPM
Sbjct: 68 LLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122
Query: 61 VLVGNKCDLEEE--RVVGKEQGASLARAF-ACTFLETSAKAKVN 101
VLVG + + RV+ + L+ CT+ ET A +N
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 131 bits (333), Expect = 8e-41
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDDV 58
++ I + AG + I V+S+ +++F +S L Q+ LR + +
Sbjct: 55 LVLIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGL 109
Query: 59 PMVLVG--NKCDLEEERVVGKEQGASL-ARAFACTFLETSAKAKVN 101
+ LVG ++ RVVG + +L A C++ ET A +N
Sbjct: 110 ALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 111 bits (279), Expect = 4e-32
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+ ++D+Y G IL + +T++ T +L+ ++ V ++ P+V
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIV 121
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ NK D++ + + K+ + + + E SAK N
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 108 bits (272), Expect = 8e-31
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQ----GFILVYSIT--AQSTFNDLSDLREQILRVKDT 55
L T M +G+ GF+L ++ F+D +
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196
Query: 56 DDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P+V+V KCD ER + +L++ +ETSA++ VN
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARSNVN 241
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 105 bits (265), Expect = 2e-30
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E+F A+ Y + Q +LV+S T + +F +S RE+++ + D+P
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTA 113
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LV NK DL ++ + E+ LA+ F TS K +N
Sbjct: 114 LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 106 bits (266), Expect = 2e-30
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G I+VY +T Q +FN++ L+E + +++V
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNK 124
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDL ++VV A + FLETSAK N
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 106 bits (266), Expect = 2e-30
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G I+VY +T Q +FN++ L+E + +++V
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE--IDRYASENVNK 141
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDL ++VV A + FLETSAK N
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 106 bits (267), Expect = 2e-30
Identities = 31/100 (31%), Positives = 58/100 (58%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +V
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DL ++R V + Q LA + + ETSA N
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN 185
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 105 bits (264), Expect = 3e-30
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E++ + Y + GF+L+Y I Q +F + D + ++ D+ +
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ--IKTYSWDNAQV 130
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDLE+ERVV E G LA F E SAK +N
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 105 bits (263), Expect = 5e-30
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E++ + Y + GFIL+Y IT + +FN + D + ++ D+ +
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ--IKTYSWDNAQV 131
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCD+EEERVV E+G LA F E SAK ++
Sbjct: 132 ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 105 bits (264), Expect = 5e-30
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E++ + Y + GFIL+Y IT + +FN + D + ++ D+ +
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ--IKTYSWDNAQV 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCD+E+ERVV E+G LA F E SAK +N
Sbjct: 117 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 105 bits (263), Expect = 6e-30
Identities = 31/100 (31%), Positives = 59/100 (59%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG E+F ++ + ++ GF+L++ +T + +F ++ + Q+ +++ +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DLE++R V +E+ LA + + ETSA N
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 103 bits (260), Expect = 9e-30
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L++ DTAG E+F ++ Y ++ +L+Y +T +++F+++ L E + DV +
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE--IHEYAQHDVAL 119
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L+GNK D ERVV +E G LA+ + F+ETSAK +N
Sbjct: 120 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 104 bits (262), Expect = 1e-29
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y ++ IL Y IT + +F L + LRE + ++ V
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE--IEQYASNKVIT 134
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNK DL E R V +++ + A +LETSAK N
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 103 bits (260), Expect = 1e-29
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G +LVY IT + +F+++ + +R + + DV
Sbjct: 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN--IEEHASADVEK 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+++GNKCD+ ++R V KE+G LA + F+ETSAKA +N
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 104 bits (261), Expect = 2e-29
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + DTAG E ++ +R L + F+L +S+ +++++ ++ LR + +VP+
Sbjct: 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPI 116
Query: 61 VLVGNKCDLEEE--------RVVGKEQGASLARAF-ACTFLETSAKAKVN 101
VLVG K DL ++ V+ QG L + A ++E S+K + N
Sbjct: 117 VLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 103 bits (260), Expect = 2e-29
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 2 LEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+++ DTAG E+F +M Y +N + VY +T ++F+ L E+ + +D+P
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVNS 102
+LVGNKCDL V + A + ETSAK ++
Sbjct: 131 ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 103 bits (259), Expect = 2e-29
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVP 59
L+I D G M D Y+ QG +LVY IT +F +L D + +V +
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ LVGNK DLE R + E+ + + SAK +
Sbjct: 118 VALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 103 bits (258), Expect = 3e-29
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
+I DTAG E++ A+ Y + G +LV+ +T T+ + L+E L + +
Sbjct: 76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE--LYDHAEATIVV 133
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL + R V E+ A FLETSA N
Sbjct: 134 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 103 bits (259), Expect = 3e-29
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G I+VY +T Q +FN + L+E + T V
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE--IDRYATSTVLK 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDL+++RVV + A A FLETSA N
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 102 bits (257), Expect = 3e-29
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G I+VY +T+ +F ++ +I + DDV +
Sbjct: 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRI 117
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK D E +VV E A ETSAK VN
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 103 bits (258), Expect = 3e-29
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
+I DTAG E++ A+ Y + G +LVY I T+ ++ L+E LR ++ +
Sbjct: 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVI 137
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V ++ + A +F+ETSA N
Sbjct: 138 MLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 101 bits (255), Expect = 5e-29
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L I DTAG E+F A+ +Y ++ G ILVY IT + +F + + ++E LR +++ +
Sbjct: 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKE--LRKMLGNEICL 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+VGNK DLE+ER V ++ S A + TSAK
Sbjct: 115 CIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 102 bits (256), Expect = 6e-29
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E F ++ Y + G +LVY IT + TFN L+ L + R + ++ +
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED--ARQHSSSNMVI 129
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L+GNK DLE R V +E+G + AR F+ETSAK N
Sbjct: 130 MLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 101 bits (254), Expect = 8e-29
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F A+ Y + G ++VY IT +ST+N LS L + R + +
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD--ARNLTNPNTVI 123
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L+GNK DLE +R V E+ A FLE SAK N
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 102 bits (256), Expect = 8e-29
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L +D ++
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK DLE +V K A + ETSAK +N
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 101 bits (254), Expect = 8e-29
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L++ DTAG E+F ++ Y+++ ++VY IT ++F+ S + + +R + DV +
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD--VRTERGSDVII 122
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 123 MLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 101 bits (253), Expect = 2e-28
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L++ L + R+ + ++ +
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD--ARMLASQNIVI 118
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L GNK DL+ +R V + + A+ FLETSA N
Sbjct: 119 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 101 bits (254), Expect = 2e-28
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L+ L + R + ++ +
Sbjct: 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD--ARTLASPNIVV 133
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L GNK DL+ ER V + + A+ FLETSA N
Sbjct: 134 ILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 101 bits (253), Expect = 2e-28
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
+I DTAG E++ + Y + G +LVY I T+ ++ L+E LR ++ +
Sbjct: 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE--LRDHADSNIVI 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V ++ + A +F+ETSA N
Sbjct: 114 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 102 bits (255), Expect = 2e-28
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ DTAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+V
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK D+++ +V + R + + SAK+ N
Sbjct: 124 LCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN 161
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 101 bits (254), Expect = 2e-28
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L++ DTAG E+F ++ Y+++ ++VY IT ++F + + + +R + DV +
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD--VRTERGSDVII 124
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 125 MLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 165
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 100 bits (252), Expect = 3e-28
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L I DTAG E+F + Y + QG ILVY +T + TF L + ++ +D+ +
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK D E R V + +G AR + F+E SAK
Sbjct: 126 LVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDG 164
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 99.9 bits (250), Expect = 3e-28
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
I DTAG E+F A+ +Y + I+VY IT + TF+ L + +RE LR + +
Sbjct: 57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE--LRQHGPPSIVV 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ GNKCDL + R V + A + F+ETSAK +N
Sbjct: 115 AIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 99 bits (250), Expect = 4e-28
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y ++ +G ILVY IT + TF+DL ++ + ++D +
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM--IDKYASEDAEL 134
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LVGNK D E +R + ++QG A+ F E SAK N
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 99.5 bits (249), Expect = 4e-28
Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G ILVY IT + TF ++ + + D+ +
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQL 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK D+ E RVV +QG +LA+ F+E+SAK N
Sbjct: 112 LLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 100 bits (250), Expect = 6e-28
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L++ DTAG E+F + Y + G ILVY +T + TF ++ + + D+ +
Sbjct: 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT--VNEHANDEAQL 128
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK D+ E RVV +QG +LA+ F+E+SAK N
Sbjct: 129 LLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 99.6 bits (249), Expect = 6e-28
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
I DTAG E+F ++ +Y + ++VY IT Q +F L ++E L+ +++ M
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE--LKEHGPENIVM 131
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ GNKCDL + R V + A + +ETSAK +N
Sbjct: 132 AIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 99.2 bits (248), Expect = 8e-28
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
+++ DTAG E+F ++ + + +LVY +T S+F ++ R++ L V +
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 59 PMVLVGNKCDLEE-ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
P V++GNK D EE +++V ++ LA++ TSAK +N
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 99.3 bits (248), Expect = 1e-27
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L+I DTAG E+F + Y ++ G IL Y IT +S+F + + + +R ++
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED--VRKYAGSNIVQ 137
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKVN 101
+L+GNK DL E R V + SLA + +ETSAK N
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 98.0 bits (245), Expect = 1e-27
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
EI DTAG E++ ++ +Y + Q I+VY IT + +F + ++E L+ + + ++ +
Sbjct: 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKE--LQRQASPNIVI 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 98.6 bits (246), Expect = 3e-27
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
+I DTAG E++ A+ Y + G ++VY I+ S++ + + L E LR D+V +
Sbjct: 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSE--LRENADDNVAV 121
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L+GNK DL R V E+ + A+ F ETSA N
Sbjct: 122 GLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 97.2 bits (243), Expect = 4e-27
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
EI DTAG E++ ++ +Y + I+V+ +T Q++F ++E L+ + ++ M
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE--LQAQGNPNMVM 120
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL + R V E + A+ F+ETSAK N
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 97.6 bits (243), Expect = 6e-27
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
+I DTAG E++ ++ LY + I+V+ I+ +T + + + +K + + +
Sbjct: 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQ----LKISSNYII 150
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LV NK D + V + A+ F++TSAK N
Sbjct: 151 ILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 97.0 bits (242), Expect = 1e-26
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD-LREQILRVKDTDDVPM 60
L++ DTAG E+F ++ Y + G +L+Y +T + +F ++ + + + + VP+
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM--IEDAAHETVPI 136
Query: 61 VLVGNKCDL------EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK D+ E ++ V G LA + F ETSAK N
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 96.0 bits (240), Expect = 1e-26
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDV 58
++I DTAG E+F ++R + + +L +S+ +F +LS+ +++ + VK+ +
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFAC-TFLETSAKAKVN 101
P V++GNK D+ ER V E+ + R + ETSAK N
Sbjct: 118 PFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 91.6 bits (228), Expect = 1e-24
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 2 LEI--LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQI--LRVKDTDD 57
+E+ LDTAG++ + Y ILV+ +++ +F E + R
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 58 VPMVLVGNKCDLEEER-VVGKEQGASLARAFACTFLETSAKA 98
+ VLV NK DL +R V + A F + SA
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 85.9 bits (213), Expect = 2e-22
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L++ DTAG ++F +R L N F+L +S+ + S+F ++S+ +R P++
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPII 128
Query: 62 LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
LVG + DL E E+ V +E LA A +++E SA + N
Sbjct: 129 LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 77.5 bits (191), Expect = 2e-19
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 16/115 (13%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT-DDVP 59
+L + DTAG E + +R L F++ +S+ ++F + E + +K+ +VP
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ--NVKEEWVPELKEYAPNVP 124
Query: 60 MVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+L+G + DL + E+ + EQG LA+ AC ++E SA +
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 179
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 77.4 bits (191), Expect = 3e-19
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E++ +R L + +L +++ +++F+++S E ++ D V
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTV 131
Query: 62 LVGNKCDLEE--ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
LVG K DL + V K++G L + ++E S+ AK+
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 77.0 bits (190), Expect = 4e-19
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD-TDDVPM 60
L + DTAG E + +R L + FIL +S+ +++++ ++S + I +K VP+
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPI 115
Query: 61 VLVGNKCDLEE----------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
VLVG K DL + + QG L + A ++E S+K++ N
Sbjct: 116 VLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQEN 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 76.2 bits (188), Expect = 7e-19
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSIT-AQSTFNDLSDLREQILRVKDTDDVP 59
+L + D AG E+F + +M ++ VY ++ Q+ + + I P
Sbjct: 57 VLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSP 114
Query: 60 MVLVGNKCDLEEER---VVGKEQGASLAR-----AFACTFLETSAKAKVN 101
++LVG D+ +E+ + L A + +
Sbjct: 115 VILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDA 164
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 75.2 bits (185), Expect = 2e-18
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + DTAG E + +R L F++ +S+ + ++F ++ +R + P++
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPII 138
Query: 62 LVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
LVG K DL + + QG ++A+ A +LE SA +
Sbjct: 139 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 191
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 76.9 bits (189), Expect = 5e-18
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFND-LSDLREQILRVKDTDDVPM 60
D G E A +M ++L+ S + L + + P+
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKY------GGKSPV 153
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++V NK D + +++ A F S K
Sbjct: 154 IVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 72.1 bits (177), Expect = 2e-17
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI DTAG E+F ++ Y +N Q ++VY +T +F ++ L + + D+ +
Sbjct: 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIA 112
Query: 62 LVGNKCD---LEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK D ER V +E+G LA F ETSAK N
Sbjct: 113 LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 71.7 bits (176), Expect = 6e-17
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
L + DTAG E + +R L + ++ +S+ + + ++ + ++ +VP+
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK--HFCPNVPI 132
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LV NK DL + V + G ++A A +LE SAK K
Sbjct: 133 ILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 67.1 bits (164), Expect = 4e-15
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
L I DTAG + + +R L+ + +L + +T+ ++F+++ + ++ VP+
Sbjct: 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH--FCKKVPI 141
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
++VG K DL + V +G +AR+ A +LE SA+ N
Sbjct: 142 IVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 65.2 bits (159), Expect = 2e-14
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKD-TDDV 58
L + DTAG E + +R L + ++ +SI + + ++ + E VK +V
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE----VKHFCPNV 130
Query: 59 PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
P++LVGNK DL + + V E+G +A A +LE SAK K
Sbjct: 131 PIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 63.6 bits (155), Expect = 4e-14
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDT-DDV 58
L + DT+G+ + +R L + ++ + I+ T + + E +++ +
Sbjct: 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE----IQEFCPNT 112
Query: 59 PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
M+LVG K DL + V +QGA++A+ A T++E SA N
Sbjct: 113 KMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 62.5 bits (152), Expect = 1e-13
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTF-NDLSDLREQILRVKDTDDVPM 60
L + DTAG E + +R L ++ +S+ + ++F N + ++ + P+
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPI 112
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LVG K DL + + QG ++A+ A +LE SA +
Sbjct: 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 62.1 bits (151), Expect = 2e-13
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
L + DT+G+ + +R L + ++ + I+ T + + + +I + M
Sbjct: 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKM 135
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
+LVG K DL + V +QGA++A+ A T++E SA N
Sbjct: 136 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 61.8 bits (150), Expect = 4e-13
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDL-REQILRVKDTDDVPM 60
L + DT+G+ + +R L + +L + I+ T + R +IL +
Sbjct: 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRV 134
Query: 61 VLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAK 97
+L+G K DL + + EQG ++A+ A +LE SA
Sbjct: 135 LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 56.1 bits (135), Expect = 8e-11
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSD--LREQILRVKDTD-DV 58
L + DTAG E + +R L F++ +S+ + ++F+ + E V+ +
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE----VRHHCPNT 260
Query: 59 PMVLVGNKCDLEE------------ERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
P++LVG K DL + + QG ++A+ A +LE SA +
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 40.9 bits (96), Expect = 2e-05
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK----DTDD 57
+ G + A R L ++ G + V + +R + DD
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135
Query: 58 VPMVLVGNKCDLEE 71
VP+V+ NK DL +
Sbjct: 136 VPIVIQVNKRDLPD 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.001
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64
+D E +D+ F+ D+ D+ + IL ++ D + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFV------DNFDCKDVQDMPKSILSKEEIDHI----IM 56
Query: 65 NKCDLEEERVVG---KEQGASLARAFACTFLETSAKAKVNSWL 104
+K + + + + + F L + K +L
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-----FL 94
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 31.4 bits (72), Expect = 0.036
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 29/110 (26%)
Query: 2 LEILDTAGTEQFTAMRD--------------LYMKNGQGFILVYSITAQSTFNDLSDLRE 47
L I+DTAG +R+ ++ + + T + E
Sbjct: 54 LHIIDTAG------LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPE 107
Query: 48 QILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
I R+ +P+ +V NK D+ E + E + SA+
Sbjct: 108 FIARL--PAKLPITVVRNKADITGETLGMSEVNGH-------ALIRLSAR 148
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.5 bits (71), Expect = 0.038
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 2 LEILDTAGTEQF-----TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT- 55
L + D G + F T +D + Q I V+ + + D+ + + +++
Sbjct: 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113
Query: 56 DDVPMVLVGNKCDLEEE 72
D + ++ +K DL +
Sbjct: 114 PDAKIFVLLHKMDLVQL 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 31.0 bits (71), Expect = 0.057
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 26/110 (23%)
Query: 2 LEILDTAG---TEQFTAMRDL-----------YMKNGQGFILVYSITAQSTFNDLSDLRE 47
+ DTAG + M + + + + ++L+++RE
Sbjct: 283 FRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRE 336
Query: 48 QILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+ V NK D ++A + SA
Sbjct: 337 LK---AAHPAAKFLTVANKLDRAANA---DALIRAIADGTGTEVIGISAL 380
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.2 bits (66), Expect = 0.22
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 6 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
D G ++ + Y +N QG I V + + +D +++L+ + D +++ N
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138
Query: 66 KCDLEE 71
K D+
Sbjct: 139 KQDMPN 144
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 28.4 bits (64), Expect = 0.33
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ D G E + + Y N + I+V T + + + ++L +D ++
Sbjct: 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 121
Query: 62 LVGNKCDLEE 71
+ NK D++E
Sbjct: 122 IFANKQDVKE 131
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 28.6 bits (65), Expect = 0.34
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 42 LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
+ ++I + P++LV NK DL E++++ + + T+A
Sbjct: 317 WTTGDQEIY--EQVKHRPLILVMNKIDLVEKQLITSLE----YPENITQIVHTAAA 366
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 28.8 bits (65), Expect = 0.38
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 45 LREQILRVKDT------DDVPMVLVGNKCD-LEEERVVGKEQGASLARAFACTFLET--- 94
L E + + P+++ NK D + + + L++ +
Sbjct: 274 LIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333
Query: 95 SAKAKVN 101
SA + N
Sbjct: 334 SALKRTN 340
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 27.6 bits (62), Expect = 0.59
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 5 LDTAGTEQFTAMR 17
LDT G E FT MR
Sbjct: 60 LDTPGHEAFTTMR 72
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome,
initiation of protein synthesis, cryo-eletron
microscopy, translation/RNA complex; 13.80A
{Escherichia coli}
Length = 501
Score = 27.9 bits (63), Expect = 0.63
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 5 LDTAGTEQFTAMR 17
LDT G FT+MR
Sbjct: 56 LDTPGHAAFTSMR 68
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.1 bits (63), Expect = 0.67
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGF-----ILVYSITAQSTFNDLSDLREQILRVKDTDDV 58
++DT G + + L ++ + + + T + D+ ++ +
Sbjct: 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYED-DVVNLFKEME----I 141
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V+V NK D+ E+ +E + L SA K
Sbjct: 142 PFVVVVNKIDVLGEKA--EELKGLYESRYEAKVLLVSALQKKG 182
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 27.6 bits (62), Expect = 0.67
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 6 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
D G Y + I V T + + S +L+ ++ D +++ N
Sbjct: 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFAN 127
Query: 66 KCDLE 70
K D
Sbjct: 128 KQDQP 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.5 bits (62), Expect = 0.95
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 42 LSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAK 97
L + +IL + + ++V NK D+ E+ E+ ++ SA
Sbjct: 337 LDEEDRKIL--ERIKNKRYLVVINKVDVVEKI---NEEEIKNKLGTDRHMVKISAL 387
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 27.5 bits (61), Expect = 0.99
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 27 FILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKEQGASLARA 86
+I S + L E++ + D+P ++V NK D+ +E + ++ +
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVH--GEFKDLPFLVVINKIDVADEENI--KRLEKFVKE 307
Query: 87 FACTFLETSAKAKVN 101
++ SA
Sbjct: 308 KGLNPIKISALKGTG 322
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 27.2 bits (61), Expect = 1.1
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71
Y +N QG I V + N+ + ++L + D +++ NK DL
Sbjct: 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 26.4 bits (59), Expect = 1.6
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71
Y N + I+V T + + + ++L +D +++ NK D++E
Sbjct: 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 26.4 bits (59), Expect = 1.7
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
Y N I V + +L ++ +V+ NK D+E
Sbjct: 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 26.4 bits (59), Expect = 1.8
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
Y ++ G I V + D + +L + +++ NK DL
Sbjct: 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 26.4 bits (58), Expect = 1.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
Y +N QG I V + N+ + ++L + D +++ NK DL
Sbjct: 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 26.1 bits (58), Expect = 2.1
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEE 71
Y + I V T + +L + +++ NK DL +
Sbjct: 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.4 bits (59), Expect = 2.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 5 LDTAGTEQFTAMR 17
LDT G F+AMR
Sbjct: 57 LDTPGHAAFSAMR 69
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase;
HET: GDP; 2.00A {Methanothermobacterthermautotrophicus}
SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A*
1g7t_A*
Length = 594
Score = 26.5 bits (59), Expect = 2.4
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 4 ILDTAGTEQFTAMR 17
+DT G E FT +R
Sbjct: 74 FIDTPGHEAFTTLR 87
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.1 bits (57), Expect = 2.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 59 PMVLVGNKCDL 69
P++LVGNK DL
Sbjct: 100 PILLVGNKADL 110
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 25.6 bits (57), Expect = 4.0
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 6 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
D G +F +M + Y + + + Q + +L +P++++GN
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 66 KCDLE 70
K DL
Sbjct: 133 KRDLP 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 25.2 bits (56), Expect = 4.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLAR 85
P ++V NK D+ E + L
Sbjct: 276 PQIIVANKMDMPEAAENLEAFKEKLTD 302
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex,
immune system; HET: PTR; NMR {Homo sapiens} SCOP:
d.93.1.1 PDB: 1ka7_A
Length = 128
Score = 25.1 bits (55), Expect = 4.9
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 19 LYMKNGQGFILVYSITAQSTFNDLSDL 45
+ G + F + +L
Sbjct: 57 SQTETGSWSAETAPGVHKRYFRKIKNL 83
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 25.2 bits (56), Expect = 5.1
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
Y +N I V + F + ++L + VP+++ NK DL
Sbjct: 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 25.3 bits (55), Expect = 5.4
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 59 PMVLVGNKCDL 69
++LVGNK DL
Sbjct: 98 KVLLVGNKADL 108
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2,
NYSGXRC, STRU genomics, protein structure initiative;
2.20A {Staphylococcus aureus subsp}
Length = 295
Score = 24.9 bits (55), Expect = 6.3
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 20 YMKNGQ--GFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
+K FIL+YS + L ++ +P +++G + +
Sbjct: 63 MIKQRMVDAFILLYS---KENDPIKQMLIDE--------SMPFIVIGKPTSDIDHQFT 109
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 25.0 bits (54), Expect = 6.3
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 11/37 (29%)
Query: 17 RDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK 53
+ Y+ + + + + L E I K
Sbjct: 121 HEFYLGSKGN-----------LYKNKTVLIEAIHVSK 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 24.8 bits (55), Expect = 6.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 59 PMVLVGNKCDLEEE 72
P ++ NK DL EE
Sbjct: 271 PSLVALNKVDLLEE 284
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 24.2 bits (53), Expect = 6.7
Identities = 3/27 (11%), Positives = 7/27 (25%)
Query: 19 LYMKNGQGFILVYSITAQSTFNDLSDL 45
+ G + F + +L
Sbjct: 57 SQTETGSWSAETAPGVHKRYFRKIKNL 83
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 24.9 bits (55), Expect = 7.6
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 2 LEILDTAGTEQFTAMRDLYMKN 23
L L G E + Y +N
Sbjct: 320 LACLTPEGLEAMHKVIGFYKEN 341
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor
structure escherichia coli, struct genomics, PSI-2; HET:
FRU; 2.00A {Escherichia coli}
Length = 296
Score = 24.8 bits (55), Expect = 8.0
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 47 EQILRVKDTDDVPMVLVGNKCDLEEERVVGK--EQGASLA 84
++I + D P++++ + V +Q + A
Sbjct: 91 DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNA 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 24.5 bits (54), Expect = 8.8
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 57 DVPMVLVGNKCDL-EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
V ++V NK DL ++E + + + R L S+ +
Sbjct: 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 24.5 bits (54), Expect = 8.9
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 57 DVPMVLVGNKCDL--EEERVVGKEQGASLARAFACTFLETSAK 97
D+ ++ K DL +++ + A R TS+K
Sbjct: 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK 159
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 24.5 bits (54), Expect = 9.7
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 59 PMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKA 98
PMV+ NK D + + ++ + TSA A
Sbjct: 216 PMVIAANKADAASDEQI--KRLVREEEKRGYIVIPTSAAA 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.379
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,641,031
Number of extensions: 88056
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 136
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)