RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy785
(112 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 75.2 bits (184), Expect = 5e-19
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G +LVY IT + +F+++ + I + DV +
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKM 115
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
++GNKCD+ ++R V KE+G LA + F+ETSAKA +N
Sbjct: 116 ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 155
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 69.9 bits (170), Expect = 4e-17
Identities = 57/96 (59%), Positives = 73/96 (76%)
Query: 6 DTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGN 65
DTAGTEQF +MRDLY+KNGQGFILVYS+ Q +F D+ +R+QI+RVK + VP++LVGN
Sbjct: 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 66 KCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
K DLE ER V +G +LA + C F+ETSAK+K
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 69.9 bits (170), Expect = 6e-17
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L++ DTAG E+F ++ Y ++ +L+Y +T +++F+++ +I DV +
Sbjct: 57 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL 115
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L+GNK D ERVV +E G LA+ + F+ETSAK +N
Sbjct: 116 MLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 156
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 69.5 bits (169), Expect = 8e-17
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+I DTAG E++ + Y + G +LVY I T+ ++ +++ D ++ +
Sbjct: 54 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVI 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK DL R V ++ + A +F+ETSA N
Sbjct: 113 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 153
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 68.4 bits (166), Expect = 2e-16
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E+F A+ Y + G ++VY IT +ST+N LS + + + ++L
Sbjct: 56 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-VIIL 114
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+GNK DLE +R V E+ A FLE SAK N
Sbjct: 115 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 153
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 68.0 bits (165), Expect = 4e-16
Identities = 31/101 (30%), Positives = 58/101 (57%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L++ DTAG E+F ++ + ++ GF+L++ +T+Q +F ++ + Q+ ++ +
Sbjct: 65 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 124
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VL+GNK DL ++R V + Q LA + + ETSA N
Sbjct: 125 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQN 165
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 66.4 bits (161), Expect = 1e-15
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
+I DTAG E F ++ Y + G +LVY IT + TFN L+ E R + ++ ++L
Sbjct: 55 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA-RQHSSSNMVIML 113
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+GNK DLE R V +E+G + AR F+ETSAK N
Sbjct: 114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 152
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 65.7 bits (159), Expect = 2e-15
Identities = 45/95 (47%), Positives = 66/95 (69%)
Query: 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
TAG E + A+RD Y ++G+GF+ V+SIT +F +D REQILRVK+ ++VP +LVGNK
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 67 CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
DLE++R V E+ + A + ++ETSAK + N
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 65.2 bits (158), Expect = 4e-15
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L+I DTAG E+F + Y + G ILVY IT + TF ++ + + D+ ++
Sbjct: 53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHANDEAQLL 111
Query: 62 LVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LVGNK D+ E RVV +QG +LA+ F+E+SAK N
Sbjct: 112 LVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 150
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 64.8 bits (157), Expect = 5e-15
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y ++ IL Y IT + +F L + +I + + V
Sbjct: 55 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVIT 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNK DL E R V +++ + A +LETSAK N
Sbjct: 114 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 154
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 64.9 bits (157), Expect = 8e-15
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+I DTAG E+F + Y + G I+VY +T Q +FN + ++I R T V
Sbjct: 56 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR-YATSTVLK 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDL+++RVV + A A FLETSA N
Sbjct: 115 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 155
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 63.4 bits (153), Expect = 2e-14
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVL 62
++ DTAG E+F ++ Y+++ ++VY IT ++F + + + + DV ++L
Sbjct: 52 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIML 110
Query: 63 VGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VGNK DL ++R V E+G A+ F+ETSAKA N
Sbjct: 111 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 149
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 63.1 bits (152), Expect = 2e-14
Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
+L+ILDTAG E+++AMRD YM+ G+GF+ V++I +F D+ REQI RVKD+DDVPM
Sbjct: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM 111
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
VLVGNKCD R V Q LAR++ ++ETSAK +
Sbjct: 112 VLVGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQG 151
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 63.0 bits (152), Expect = 3e-14
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+I DTAG E+F ++ Y + G +LVY IT++ T+N L++ + ++ +
Sbjct: 55 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L GNK DL+ +R V + + A+ FLETSA N
Sbjct: 114 ILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 154
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 62.9 bits (152), Expect = 3e-14
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L I DTAG E+F + Y + QG ILVY +T + TF L + ++ +D+
Sbjct: 57 KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN 116
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNK D +E R V + +G AR + F+E SAK
Sbjct: 117 MLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDG 156
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 61.8 bits (149), Expect = 6e-14
Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+I DTAG E++ + Y + GFIL+Y IT + +FN + D QI + D+ +
Sbjct: 55 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWDNAQV 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCD+E+ERVV E+G LA F E SAK +N
Sbjct: 114 LLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 154
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 60.0 bits (144), Expect = 3e-13
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 1 MLEILDTAGTEQF-TAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVP 59
+++ DTAG E+F +M Y +N + VY +T ++F+ L E+ + +D+P
Sbjct: 52 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP 111
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+LVGNKCDL V + A + ETSAK +
Sbjct: 112 RILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPND 153
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 57.8 bits (138), Expect = 3e-12
Identities = 45/95 (47%), Positives = 65/95 (68%)
Query: 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
TAG E+F AMR+ YM+ G GF+LV++I + +FN++ L QILRVKD DD P+VLVGNK
Sbjct: 61 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 120
Query: 67 CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
DLE +R V + + ++ + + E SAK ++N
Sbjct: 121 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 155
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 57.3 bits (137), Expect = 3e-12
Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
Query: 5 LDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVG 64
LDTAGTEQFTAMRDLYMKNGQGF LVYSITAQSTFNDL DLREQILRVKDT+DVPM+LVG
Sbjct: 56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115
Query: 65 NKCDLEEERVVGKEQGASLARAF-ACTFLETSAKAKVN 101
NKCDLE+ERVVGKEQG +LAR + C FLE+SAK+K+N
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 57.0 bits (136), Expect = 6e-12
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 9 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68
G E+F+AMR+ YM+ G GF++VYS+T +++F + + ILRVKD + PM+LV NK D
Sbjct: 61 GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 120
Query: 69 LEEERVVGKEQGASLARAFACTFLETSAK 97
L R V ++QG +A + ++ETSAK
Sbjct: 121 LMHLRKVTRDQGKEMATKYNIPYIETSAK 149
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 55.4 bits (132), Expect = 2e-11
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + DTAG E + +R L ++ +S+ + ++F ++ +R + P+
Sbjct: 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPI 112
Query: 61 VLVGNKCDLEEERVVGKE------------QGASLARAF-ACTFLETSAKAKVN 101
+LVG K DL +++ ++ QG ++A+ A +LE SA +
Sbjct: 113 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 55.0 bits (131), Expect = 3e-11
Identities = 51/101 (50%), Positives = 75/101 (74%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L+ILDTAG E+F AMR+ YM+ G+GF+LV+S+T + +F ++ + QILRVKD D+ PM
Sbjct: 54 RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+L+GNK DL+ +R V +E+G LAR T++E SAK ++N
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMN 154
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 52.6 bits (125), Expect = 2e-10
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVP 59
+I DTAG E+F ++R + + +L +S+ +F +LS+ +++ + VK+ + P
Sbjct: 58 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 117
Query: 60 MVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
V++GNK D+ E +V +E A + ETSAK N
Sbjct: 118 FVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATN 159
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 52.3 bits (124), Expect = 3e-10
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
I DTAG E+F A+ +Y ++ G ILVY IT + +F + + +++ R +++ + +V
Sbjct: 56 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL-RKMLGNEICLCIV 114
Query: 64 GNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
GNK DLE+ER V ++ S A + TSAK
Sbjct: 115 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 152
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 51.2 bits (121), Expect = 7e-10
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
EI DTAG E++ ++ +Y + Q I+VY IT + +F + +++ + + + ++ +
Sbjct: 56 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL-QRQASPNIVI 114
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L GNK DL +R V ++ S A + F+ETSAK +N
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 50.3 bits (119), Expect = 2e-09
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
+ D G ++ + Y QG I V + ++ +I+ ++ D +++
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 64 GNKCDLEEERV---VGKEQGASLARAFACTFLETSAKAKVN-----SWLC 105
NK DL + + ++ G + R + A + +WL
Sbjct: 120 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 169
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 49.6 bits (117), Expect = 2e-09
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
I DTAG E+F A+ +Y + I+VY IT + TF+ L + ++ R + +
Sbjct: 54 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL-RQHGPPSIVV 112
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ GNKCDL + R V + A + F+ETSAK +N
Sbjct: 113 AIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 153
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 48.8 bits (115), Expect = 6e-09
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + DTAG E + +R L F++ +S+ + S+F ++ + + P
Sbjct: 52 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT-HHCPKTPF 110
Query: 61 VLVGNKCDLEEERVV------------GKEQGASLARAF-ACTFLETSAKAKVN 101
+LVG + DL ++ E LAR A ++E SA +
Sbjct: 111 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 164
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 48.4 bits (114), Expect = 8e-09
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 9 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK-DTDDVPMVLVGNKC 67
G+ QF AM+ L + G FILVYSIT++ + +L + EQI +K D + +P++LVGNKC
Sbjct: 59 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 118
Query: 68 DLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
D R V + +LAR + C F+ETSAK N
Sbjct: 119 DESPSREVQSSEAEALARTWKCAFMETSAKLNHN 152
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 47.3 bits (111), Expect = 3e-08
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 11 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
E + +R L F++ +S+ ++F ++ + L+ + +VP +L+G + DL
Sbjct: 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLR 126
Query: 71 EERV------------VGKEQGASLARAF-ACTFLETSAKAKVN 101
++ + EQG LA+ AC ++E SA +
Sbjct: 127 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKG 170
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 46.6 bits (109), Expect = 3e-08
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ D G ++ + Y +N QG I V + N+ + ++L + D ++
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105
Query: 62 LVGNKC---DLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ NK + + + G R T A +
Sbjct: 106 VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 45.8 bits (107), Expect = 8e-08
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
TAG E+F ++ +Y +N Q ++VY +T +F +++ + + D+ + LVGNK
Sbjct: 59 TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNK 117
Query: 67 CDL---EEERVVGKEQGASLARAFACTFLETSAKAKVN 101
D+ ER V +E+G LA F ETSAK N
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGEN 155
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 45.7 bits (107), Expect = 8e-08
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEER-- 73
Y +N I V + F + ++L + VP+++ NK DL
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 135
Query: 74 -VVGKEQGASLARAFACTFLETSAKAKVN 101
+ + R SA
Sbjct: 136 SEIAEGLNLHTIRDRVWQIQSCSALTGEG 164
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 45.4 bits (106), Expect = 1e-07
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILR---VKDTDDVP 59
++ DTAG E+F ++ + + +LVY +T S+F ++ R++ L V + P
Sbjct: 55 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 114
Query: 60 MVLVGNKCDLEEERVVGKEQGASL--ARAFACTFLETSAKAKVN 101
V++GNK D EE + + E+ A TSAK +N
Sbjct: 115 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 158
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 43.8 bits (102), Expect = 4e-07
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
L + D G Y + I V T + + S +L+ ++ D ++
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 62 LVGNKCDLE---EERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ NK D V KE + + + + +SA
Sbjct: 123 VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 165
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 42.7 bits (99), Expect = 1e-06
Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 11 EQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLE 70
+ +R L + ++ + I+ T + + + + + M+LVG K DL
Sbjct: 61 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCPNTKMLLVGCKSDLR 119
Query: 71 E------------ERVVGKEQGASLARAF-ACTFLETSAKAKVNS 102
+ V +QGA++A+ A T++E SA NS
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 42.0 bits (97), Expect = 2e-06
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVK---DTDD 57
++I DTAG E+F ++ + + +LV+ +TA +TF L R++ L D ++
Sbjct: 52 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 111
Query: 58 VPMVLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
P V++GNK DLE +V K A + ETSAK +N
Sbjct: 112 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 155
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 41.1 bits (95), Expect = 5e-06
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + DTAG E + +R L + ++ +SI + + ++ + ++ +VP+
Sbjct: 51 ELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPI 109
Query: 61 VLVGNKCDLEEERVVGK------------EQGASLARAF-ACTFLETSAKAKVN 101
+LVGNK DL + + E+G +A A ++E SAK K
Sbjct: 110 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 163
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 40.8 bits (94), Expect = 6e-06
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
R+ +M+ G+GF+LVY IT + +F ++ L+ + +K +V ++LVGNK DL+ R V
Sbjct: 65 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV 124
Query: 76 GKEQGASLARAFACTFLETSAK 97
E+G LA AC F E SA
Sbjct: 125 STEEGEKLATELACAFYECSAC 146
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 40.8 bits (94), Expect = 6e-06
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 3/103 (2%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
+ D G E + + Y N + I+V T + + + ++L +D ++
Sbjct: 61 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 120
Query: 62 LVGNKCDLEE---ERVVGKEQGASLARAFACTFLETSAKAKVN 101
+ NK D++E + + + + A
Sbjct: 121 IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG 163
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 39.3 bits (90), Expect = 2e-05
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 1 MLEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPM 60
L + DTAG E+F A+ Y + Q +LV+S T + +F +S RE+ V + D+P
Sbjct: 52 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPT 109
Query: 61 VLVGNKCDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
LV NK DL ++ + E+ LA+ F TS K +N
Sbjct: 110 ALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 150
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 39.0 bits (89), Expect = 2e-05
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
+ D M+ G +++VYSIT +++F S+LR Q+ R + T+D+P++LVGNK DL R V
Sbjct: 70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREV 129
Query: 76 GKEQGASLARAFACTFLETSAKAKVN 101
+G + A F C F+ETSA + N
Sbjct: 130 SVSEGRACAVVFDCKFIETSAAVQHN 155
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 38.2 bits (87), Expect = 5e-05
Identities = 32/93 (34%), Positives = 55/93 (59%)
Query: 9 GTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCD 68
G ++++ Y + G+ILVYS+T+ +F + + ++L + +P++LVGNK D
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 69 LEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
L ERV+ E+G +LA ++ FLE+SAK
Sbjct: 121 LHMERVISYEEGKALAESWNAAFLESSAKENQT 153
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 37.8 bits (86), Expect = 6e-05
Identities = 36/86 (41%), Positives = 52/86 (60%)
Query: 16 MRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNKCDLEEERVV 75
+ M G +++VYS+T + +F S+LR Q+ R + TDDVP++LVGNK DL R V
Sbjct: 64 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 123
Query: 76 GKEQGASLARAFACTFLETSAKAKVN 101
++G + A F C F+ETSA N
Sbjct: 124 SVDEGRACAVVFDCKFIETSAALHHN 149
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 36.2 bits (82), Expect = 3e-04
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 51 RVKDTDDVPMVLVGNKCDLEE---ERVVGKEQGASLARAFACTFLETSAKAKVN 101
+P++++GNK DL E+ + ++ S + S K K N
Sbjct: 98 DKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDN 151
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 36.2 bits (82), Expect = 3e-04
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 7 TAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLVGNK 66
TAG E+F +RD Y Q I+++ +T++ T+ ++ + ++RV +++P+VL GNK
Sbjct: 59 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNK 116
Query: 67 CDLEEERVVGKEQGASLARAFACTFLETSAKAKVN 101
D+++ +V K R + + SAK+ N
Sbjct: 117 VDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYN 149
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 34.0 bits (77), Expect = 0.002
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 2 LEILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQST----------FNDLSDLREQILR 51
+ D G + I V + ++ + + +L + I
Sbjct: 49 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWN 108
Query: 52 VKDTDDVPMVLVGNKCDLEEERVVGKEQ 79
+ + ++L NK DL E+V+ +
Sbjct: 109 NRWLRTISVILFLNKQDLLAEKVLAGKS 136
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 0.13
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKD--TDDVPMVLVGNKCDLEEE--RVV 75
+ I V+S+ +++F +S L Q+ ++ + + LVG + + RVV
Sbjct: 67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126
Query: 76 GKEQGASLAR-AFACTFLETSAKAKVN 101
G + +L C++ ET A +N
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLN 153
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 0.51
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 20 YMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDT--DDVPMVLVGNKCDLEEER 73
+V S Q D+++ Q+L + +++ NK D+ +
Sbjct: 69 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.0 bits (59), Expect = 0.54
Identities = 9/65 (13%), Positives = 14/65 (21%), Gaps = 2/65 (3%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMVLV 63
D G D Y++ + Y + I + V
Sbjct: 111 FWDLPGIGSTNFPPDTYLE--KMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFV 168
Query: 64 GNKCD 68
K D
Sbjct: 169 RTKVD 173
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 26.1 bits (57), Expect = 0.88
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYS----ITAQSTFNDLSDLREQILRVKDTDDVP 59
+D G + G ILV S Q+ RE IL +
Sbjct: 71 HVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT--------REHILLARQVGVPY 122
Query: 60 MVLVGNKCDLEEE 72
+V+ NK D+ ++
Sbjct: 123 IVVFMNKVDMVDD 135
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of
bifunctional purine biosynthesis enzyme ATIC
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 25.0 bits (54), Expect = 2.2
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 3 EILDTAGTEQFTAMRDLYMKNGQGFILVYSITAQSTFNDLSDLREQILRVKDTDDVPMV 61
EI ++GT +F + + ++ ++ IL + DV V
Sbjct: 27 EIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPRWDVVFV 85
>d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 23.4 bits (50), Expect = 5.3
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 32 SITAQSTFNDLSDLREQ 48
S++ + TF++++ EQ
Sbjct: 5 SMSVERTFSEINKAEEQ 21
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 23.6 bits (50), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 47 EQILRVKDTDDVPMVLVGNKCDLEEERV 74
E IL+ K P +++ NK D + V
Sbjct: 37 EDILKNK-----PRIMLLNKADKADAAV 59
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 23.5 bits (50), Expect = 6.8
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 4 ILDTAGTEQFTAMRDLYMKNGQGFILVYS----ITAQSTFNDLSDLREQILRVKDTDDVP 59
I+D G FT + M+ G I+V+ + QS E + R + VP
Sbjct: 75 IIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQS---------ETVWRQAEKYKVP 125
Query: 60 MVLVGNKCD 68
+ NK D
Sbjct: 126 RIAFANKMD 134
>d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 23.1 bits (49), Expect = 8.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 32 SITAQSTFNDLSDLRE 47
S + + +F S E
Sbjct: 2 SFSEEDSFKKCSSEVE 17
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 360
Score = 23.3 bits (50), Expect = 8.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 40 NDLSDLREQILRVKDTDD 57
L LREQ+LR D
Sbjct: 96 ILLCRLREQVLRELGFRD 113
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.379
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,763
Number of extensions: 16043
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 57
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)