BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7854
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYE-GDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
+P +C G C N G + C C+ GYE G K C D +EC D ++C GG C NT GS+
Sbjct: 9 SPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSY 68
Query: 141 Q 141
+
Sbjct: 69 R 69
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
+P +C G C N G+YRC C PG++ P C
Sbjct: 52 DPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC + +C G C NTPG F+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFE 26
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
C+ + G +C C+ GY G+ C D NEC + CS G C N+ G+FQ
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQG-CTNSEGAFQ 65
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 GICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
G C+ G C N G ++C C GYE P + C
Sbjct: 51 GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 81
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 83 PGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQS 142
P +C +G C N G+YRC C GY G C D +EC + C GTCKN G F+
Sbjct: 11 PDVCKHGQCINTDGSYRCECPFGY--ILAGNECVDTDECSVG-NPCGNGTCKNVIGGFEC 67
Query: 143 NFQD 146
++
Sbjct: 68 TCEE 71
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDP 110
C NG C+N++G + C C G+E P
Sbjct: 53 CGNGTCKNVIGGFECTCEEGFEPGP 77
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 83 PGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
PG+C NG C N G+++C C G D TG++C
Sbjct: 114 PGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 101 ICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
IC GY G C D +EC + +C G C NT GSF+
Sbjct: 91 ICGKGYS-RIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFK 130
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 83 PGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
P IC C+N+ G + C C GY + K C D +EC ++ C N PG +
Sbjct: 10 PSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMC---AQLCVNYPGGY 64
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC + IC CKN PG F+
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFE 26
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 63 LEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGD--------PT--- 111
L P R+ V A T+E +C NG C T +C C+PG+EGD P
Sbjct: 397 LXPEECRATVQPAQTLTSECSRLCRNGYC---TPTGKCCCSPGWEGDFCRTAKCEPACRH 453
Query: 112 GKLCSDQNECL 122
G +C N+CL
Sbjct: 454 GGVCVRPNKCL 464
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 63 LEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGD--------PT--- 111
L P R+ V A T+E +C NG C T +C C+PG+EGD P
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTP---TGKCCCSPGWEGDFCRTAKCEPACRH 432
Query: 112 GKLCSDQNECL 122
G +C N+CL
Sbjct: 433 GGVCVRPNKCL 443
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 63 LEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGD--------PT--- 111
L P R+ V A T+E +C NG C T +C C+PG+EGD P
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTP---TGKCCCSPGWEGDFCRTAKCEPACRH 432
Query: 112 GKLCSDQNECL 122
G +C N+CL
Sbjct: 433 GGVCVRPNKCL 443
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 63 LEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGD--------PT--- 111
L P R+ V A T+E +C NG C T +C C+PG+EGD P
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTP---TGKCCCSPGWEGDFCRTAKCEPACRH 432
Query: 112 GKLCSDQNECL 122
G +C N+CL
Sbjct: 433 GGVCVRPNKCL 443
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 63 LEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGD--------PT--- 111
L P R+ V A T+E +C NG C T +C C+PG+EGD P
Sbjct: 397 LMPEECRATVQPAQTLTSECSRLCRNGYC---TPTGKCCCSPGWEGDFCRTAKCEPACRH 453
Query: 112 GKLCSDQNECL 122
G +C N+CL
Sbjct: 454 GGVCVRPNKCL 464
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 91 CENLMGTYRCICNPGYE---GDPTGK-----LCSDQNECLMDVMICSGGT-CKNTPGSF 140
C N G+Y C+C+PGYE G T K C D +EC C T C NT GS+
Sbjct: 61 CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSY 119
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 62 GLEPPTSRSEVHGANHHTTENPGICTNG--------ACENLMGTYRCICNPGYE 107
G EP + + +T ++ C++G C N +G+Y C C PG++
Sbjct: 75 GYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 44 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 77
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 88 NGACENLMGTYRCICNPGYEG 108
NG+C++ + Y C C+PGYEG
Sbjct: 16 NGSCQDSIWGYTCTCSPGYEG 36
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 84 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 117
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 356 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 389
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 338 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 371
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD--QNECLMDV 125
+P C +G C N G+Y C C P +E +PT C D C +D+
Sbjct: 8 DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDI 53
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGY 106
E PG+C G C N G+++C C GY
Sbjct: 127 ELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 98 YRCICNPGYEG---DPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
Y+ +C PG EG +P + D +EC +C GG C NT GSFQ
Sbjct: 100 YKILC-PGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ 145
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSF 140
+D NECL D C G C NTPGS+
Sbjct: 1 TDVNECL-DPTTCISGNCVNTPGSY 24
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD--QNECLMDV 125
+P C +G C N G+Y C C P +E +PT C D C +D+
Sbjct: 8 DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDI 53
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGY 106
E PG+C G C N G+++C C GY
Sbjct: 127 ELPGLCQGGKCINTFGSFQCRCPTGY 152
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 98 YRCICNPGYEG---DPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
Y+ +C PG EG +P + D +EC +C GG C NT GSFQ
Sbjct: 100 YKILC-PGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ 145
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSF 140
+D NECL D C G C NTPGS+
Sbjct: 1 TDVNECL-DPTTCISGNCVNTPGSY 24
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 30.8 bits (68), Expect = 0.31, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 88 NGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMD 124
+G+C N GT +CIC+PGY G PT K+ + + L D
Sbjct: 195 HGSCIN--GT-KCICDPGYSG-PTCKISTKNPDFLKD 227
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 30.8 bits (68), Expect = 0.33, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 88 NGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMD 124
+G+C N GT +CIC+PGY G PT K+ + + L D
Sbjct: 195 HGSCIN--GT-KCICDPGYSG-PTCKISTKNPDFLKD 227
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 81 ENPGICTNGACENLMGTYRCICNP 104
EN G C+ G C NL GT+ CIC P
Sbjct: 84 ENGGFCS-GVCHNLPGTFECICGP 106
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 81 ENPGICTNGACENLMGTYRCICNP 104
EN G C+ G C NL GT+ CIC P
Sbjct: 84 ENGGFCS-GVCHNLPGTFECICGP 106
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 84 GICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
G C+ G C N G ++C C GYE P + C
Sbjct: 8 GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 73 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 29.3 bits (64), Expect = 0.81, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 13 GRLRIKGVSKHS-----RLAVALRRSISIDEFTVHSSTLIALSQESQDLERLKFGLEPPT 67
GR G KH+ RL +A RR + D + LI L ++ L+ L+F EPP
Sbjct: 397 GRDPATGEQKHADMEFMRLTIA-RRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPV 455
Query: 68 SR 69
R
Sbjct: 456 LR 457
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 46 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 80
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 73 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 46 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 80
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 29.3 bits (64), Expect = 0.95, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEG 108
C N A C + +G ++CIC PGYEG
Sbjct: 10 CQNDATCLDQIGEFQCICMPGYEG 33
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 49 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEG 108
C N A C + +G ++CIC PGYEG
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYEG 76
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 89 GACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
G C N +G++ C C GY G P ++ D NEC+ + + TC + G FQ
Sbjct: 19 GKCINTLGSFECQCLQGYTG-PRCEI--DVNECVSNPCQ-NDATCLDQIGEFQ 67
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS 116
++P C+ C NL G Y+C C G++ DP K C
Sbjct: 49 QDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEG 108
C N A C + +G ++CIC PGYEG
Sbjct: 51 CQNDATCLDQIGEFQCICMPGYEG 74
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 89 GACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
G C N +G++ C C GY G P ++ D NEC+ + + TC + G FQ
Sbjct: 17 GKCINTLGSFECQCLQGYTG-PRCEI--DVNECVSNPCQ-NDATCLDQIGEFQ 65
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYE 107
E+P C N +G Y C C PGYE
Sbjct: 16 EDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>pdb|1D2Z|B Chain B, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
pdb|1D2Z|D Chain D, Three-Dimensional Structure Of A Complex Between The Death
Domains Of Pelle And Tube
Length = 153
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 123 MDVMICSGGTCKNTPGSFQSNFQ 145
MDV CSG C N P + F+
Sbjct: 43 MDVQACSGAGCLNFPAEIKKGFK 65
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 89 GACENLMGTYRCICNPGYEGDP----TGKLCS-DQNEC 121
G C++ +G Y C C G+EG T KLCS D +C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC 91
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 89 GACENLMGTYRCICNPGYEGDP----TGKLCS-DQNEC 121
G C++ +G Y C C G+EG T KLCS D +C
Sbjct: 14 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDC 51
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 83 PGICTNGA-CENLMGTYRCICNPGYEG 108
P C NG C++ + +Y C C G+EG
Sbjct: 53 PNPCLNGGLCKDDINSYECWCQVGFEG 79
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 89 GACENLMGTYRCICNPGYEGDP----TGKLCSDQN 119
G C++ +G Y C C G+EG T KLCS N
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,833,597
Number of Sequences: 62578
Number of extensions: 189485
Number of successful extensions: 462
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 115
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)