RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7854
(153 letters)
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 76.9 bits (190), Expect = 1e-19
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPT-GKLCSDQNECLMDVMICSGGTCKNTPG 138
+P +C G C N G + C C+ GYE K C D +EC D ++C GG C NT G
Sbjct: 7 RISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEG 66
Query: 139 SFQ 141
S++
Sbjct: 67 SYR 69
Score = 48.1 bits (115), Expect = 2e-08
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
+P +C G C N G+YRC C PG++ P C
Sbjct: 50 QRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 36.9 bits (86), Expect = 3e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSFQ 141
+D +EC + +C G C NTPG F+
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFE 26
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 72.7 bits (179), Expect = 7e-18
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGS 139
+ P IC C+N+ G + C C GY + K C D +EC + +C+ C N PG
Sbjct: 7 SLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN--MCA-QLCVNYPGG 63
Query: 140 FQ 141
+
Sbjct: 64 YT 65
Score = 35.3 bits (82), Expect = 0.001
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC + IC CKN PG F+
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFE 26
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 86 CTNGACE----NLMGTYRCICN--PGYEGDPTGKLCSDQN 119
C+ C N G Y C C+ G++ K C +
Sbjct: 48 CSENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS 87
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 67.6 bits (166), Expect = 4e-16
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
+ P +C +G C N G+YRC C GY G C D +EC + C GTCKN G F
Sbjct: 9 KEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGN-PCGNGTCKNVIGGF 65
Query: 141 Q 141
+
Sbjct: 66 E 66
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTG 112
C NG C+N++G + C C G+E P
Sbjct: 48 SVGNPCGNGTCKNVIGGFECTCEEGFEPGPMM 79
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 115 CSDQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC +C G C NT GS++
Sbjct: 2 AVDMDECKEPD-VCKHGQCINTDGSYR 27
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 68.2 bits (167), Expect = 2e-15
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
A C G+ +P + D +EC +C GG C NT GSFQ
Sbjct: 90 EMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ 145
Score = 63.5 bits (155), Expect = 1e-13
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
+P C +G C N G+Y C C P +E +PT C D + G
Sbjct: 7 LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNC----YLDIRPRGDNGDT 62
Query: 141 Q 141
Sbjct: 63 A 63
Score = 49.7 bits (119), Expect = 2e-08
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
E PG+C G C N G+++C C GY + ++C
Sbjct: 126 QELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 48.5 bits (116), Expect = 5e-08
Identities = 5/56 (8%), Positives = 8/56 (14%), Gaps = 2/56 (3%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
+ G C G CS + +
Sbjct: 50 YLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-GKAWGTPCEM-CPAVNTSEYKIL 103
Score = 30.8 bits (70), Expect = 0.099
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSFQ 141
+D NECL C G C NTPGS+
Sbjct: 1 TDVNECLDP-TTCISGNCVNTPGSYI 25
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 62.0 bits (151), Expect = 3e-13
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 76 NHHTTENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKN 135
+ G C IC GY G C D +EC + +C G C N
Sbjct: 68 KSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLCVN 124
Query: 136 TPGSFQ 141
T GSF+
Sbjct: 125 TRGSFK 130
Score = 55.4 bits (134), Expect = 1e-10
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 84 GICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
C NG C+N G++ C C+ DPT +C + + TC T +
Sbjct: 10 SPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKG----------TCWQTVIDGR 57
Score = 51.2 bits (123), Expect = 3e-09
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
PG+C NG C N G+++C C G D TG++C
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 35.0 bits (81), Expect = 0.003
Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 10/56 (17%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
G C + RC N + +++C + G T
Sbjct: 44 TIKGTCWQTVIDGRCEINING--------ATLKSQCCSSLGAAWG--SPCTLCQVD 89
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 57.1 bits (138), Expect = 2e-11
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 79 TTENPGIC-TNGACENLMGTYRCICNPGYE--------GDPTGKLCSDQNECLMDVMIC- 128
T + C C N G+Y C+C+PGYE + + C D +EC C
Sbjct: 48 ATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCD 107
Query: 129 SGGTCKNTPGSFQ 141
S C NT GS+
Sbjct: 108 SSTVCFNTVGSYS 120
Score = 50.6 bits (121), Expect = 7e-09
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 80 TENPGIC-TNGACENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
+ C ++ C N +G+Y C C PG++ C
Sbjct: 100 SSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 49.0 bits (117), Expect = 2e-08
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 88 NGACENLMGTYRCICNPGYEGD-----PTGKLCSDQNECLMDVMIC--SGGTCKNTPGSF 140
+ +C N C CNPG+ + C D NEC + C NT GS+
Sbjct: 12 DSSCVN---ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSY 68
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 52.3 bits (126), Expect = 6e-10
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 88 NGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
+ + M Y NECL + CS C + ++
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQG----AMGTNECLDNNGGCS-YVCNDLKIGYE 51
Score = 52.3 bits (126), Expect = 7e-10
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
+N G C + C +L Y C+C G++ + C D +EC CS C N G +
Sbjct: 34 DNNGGC-SYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDP-DTCS-QLCVNLEGGY 89
Query: 141 Q 141
+
Sbjct: 90 K 90
Score = 37.7 bits (88), Expect = 2e-04
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
++P C + C NL G Y+C C G++ DP K C
Sbjct: 73 QDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 50.4 bits (121), Expect = 5e-09
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 73 HGANHHTTENPGICTNGACE---NLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS 129
H C AC + C C GY D G +C+D +EC CS
Sbjct: 33 APIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDD-GFICTDIDECENGG-FCS 90
Query: 130 GGTCKNTPGSFQ 141
G C N PG+F+
Sbjct: 91 -GVCHNLPGTFE 101
Score = 39.7 bits (93), Expect = 4e-05
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDP-TGKLC 115
EN G C +G C NL GT+ CIC P G C
Sbjct: 84 ENGGFC-SGVCHNLPGTFECICGPDSALAGQIGTDC 118
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 50.1 bits (120), Expect = 5e-09
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
C +G C + +G++ C C G+EG + C +D C C G +
Sbjct: 23 CGHGTCIDGIGSFSCDCRSGWEGR-FCQREVSFLNCSLDNGGC-THYCLEEVGWRR 76
Score = 39.3 bits (92), Expect = 6e-05
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
+ G C C +G RC C PGY+ C +
Sbjct: 60 DNGGC-THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 25.4 bits (56), Expect = 4.4
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 112 GKLCSDQN-ECLMDVMICSGGTCKNTPGSFQ 141
G C E + C GTC + GSF
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFS 36
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 50.8 bits (121), Expect = 2e-08
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 86 CTNGA-CENLM-GTYRCI-CNPGYEGDPTGKLCSDQNECLMDVMIC----SGGTCKNTPG 138
C GA C + G++ C C G+ G+ G C D +EC + IC C NT
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFLGN--GTHCEDLDECALVPDICFSTSKVPRCVNTQP 68
Query: 139 SFQ 141
F
Sbjct: 69 GFH 71
Score = 44.2 bits (104), Expect = 4e-06
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 17/87 (19%)
Query: 80 TENPGICTNGA----CENLMGTYRCI-CNPGYEGDP-----------TGKLCSDQNECLM 123
P IC + + C N + C+ C P Y G+ ++C +N C
Sbjct: 48 ALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 124 DVMICS-GGTCKNTPGSFQSNFQDSSP 149
C C ++
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQ 134
Score = 31.9 bits (72), Expect = 0.066
Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 80 TENPGIC-TNGACENL----MGTYRCICNPGYEGDP-TGKLCSDQNECL--------MDV 125
+ C + C L Y+C C GY GD SD +
Sbjct: 106 KDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNAT 165
Query: 126 MICSGGTCKNTPGSFQSNF 144
C C + P S Q +F
Sbjct: 166 YHCIKDNCPHLPNSGQEDF 184
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 47.2 bits (113), Expect = 8e-08
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLC-SDQNECLMDVMICS-GGTCKNTPGSFQ 141
C + C N +G++ C C GY TG C D NEC+ + C TC + G FQ
Sbjct: 15 CEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNP--CQNDATCLDQIGEFQ 67
Score = 44.1 bits (105), Expect = 1e-06
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICS-GGTCKNTPGSFQ 141
C N A C + +G ++CIC PGY G C + +EC C G C + FQ
Sbjct: 53 CQNDATCLDQIGEFQCICMPGY----EGVHCEVNTDECASSP--CLHNGRCLDKINEFQ 105
Score = 38.3 bits (90), Expect = 2e-04
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGG 131
C + C + + ++C C G+ TG LC D + L +
Sbjct: 91 CLHNGRCLDKINEFQCECPTGF----TGHLCQVDLHHILDAQKMVWNH 134
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 46.2 bits (110), Expect = 3e-07
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
C NG C++ + +Y C C G+ GK C C + C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGF----EGKNCELDATCNIKNGRCKQFCKTGADSKVL 108
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 5/59 (8%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
G C C C GY P K C + C + ++P +
Sbjct: 91 KNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC---KPAVPFP--CGRVSVSHSPTTL 144
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 44.2 bits (105), Expect = 1e-06
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGGTCKNTPGSFQ 141
C N C++ +G Y C C G+ GK C + C S
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVV 103
Score = 35.7 bits (83), Expect = 0.002
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 5/57 (8%)
Query: 86 CTNGAC-ENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
C C + E D ++C + G CK+ G +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNK---YKDGDQCETS-PCQNQGKCKDGLGEYT 64
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCK 134
+ G C + C + C C GY GK C C +
Sbjct: 87 DNGDC-DQFCHEEQNSVVCSCARGYTLADNGKAC---IPTGPYP--CGKQTLER 134
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGGTCKNTPGSFQ 141
C N C++ +G Y C C G+ GK C + C S
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVV 103
Score = 37.8 bits (88), Expect = 5e-04
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNTPGSF 140
+ G C + C + C C GY GK C C +
Sbjct: 87 DNGDC-DQFCHEEQNSVVCSCARGYTLADNGKAC---IPTGPYP--CGKQTLERRKRSVA 140
Query: 141 Q 141
Q
Sbjct: 141 Q 141
Score = 34.7 bits (80), Expect = 0.005
Identities = 4/64 (6%), Positives = 13/64 (20%), Gaps = 6/64 (9%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMIC-SGGTCKNTPGSFQSN 143
C + + G D + +D + + +
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSIT--WKPYDAADLDP--TENPFDLLDFNQTQPER 182
Query: 144 FQDS 147
++
Sbjct: 183 GDNN 186
Score = 32.4 bits (74), Expect = 0.034
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 86 CTNGACEN-LMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNTPGSFQ 141
C C + E D ++C C G CK+ G +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNK---YKDGDQCETS--PCQNQGKCKDGLGEYT 64
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 45.1 bits (106), Expect = 2e-06
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQ 141
N G C C+ + G +C C+ GY G+ C D NEC + CS G C N+ G+FQ
Sbjct: 9 NNGGCAQK-CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG-YCSQG-CTNSEGAFQ 65
Score = 35.9 bits (82), Expect = 0.003
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENL----MGTYRCICNPGYEG 108
++ E ++ L P +H +N NG C +L Y C C G+
Sbjct: 319 GKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR- 377
Query: 109 DPTGKLCS 116
C+
Sbjct: 378 KINSHACA 385
Score = 34.0 bits (77), Expect = 0.013
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTP 137
G C+ G C N G ++C C GYE P + C + + + P
Sbjct: 48 AEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103
Score = 28.2 bits (62), Expect = 1.2
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSFQS 142
+ + C ++ C+ C+ G+ Q
Sbjct: 1 TGEENCNVNNGGCAQ-KCQMIRGAVQC 26
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 43.9 bits (102), Expect = 3e-06
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 85 ICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVM--------ICSGGTCKNT 136
IC NG + + C+CN G C + NEC + + C
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLS-ENTCEEXNECXXETLGXACGEFGQCIENPDPAQ 70
Query: 137 PGSF 140
+
Sbjct: 71 VNMY 74
Score = 42.7 bits (99), Expect = 8e-06
Identities = 8/61 (13%), Positives = 11/61 (18%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
G C + Y C C GY + + S
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 141 Q 141
Sbjct: 117 G 117
Score = 42.7 bits (99), Expect = 1e-05
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 87 TNGACENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
N C N+ G Y C C G+ D +C +
Sbjct: 149 DNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 36.9 bits (84), Expect = 0.001
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGK-LCSDQNECLMDVMICS-GGTCKNTPGS 139
+ + + C C G +P + C+ E + + C N G
Sbjct: 100 GESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGV 159
Query: 140 F 140
+
Sbjct: 160 Y 160
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 44.1 bits (103), Expect = 5e-06
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGS 139
+N G C++ C +L Y C+C G++ + C D +EC D CS C N G
Sbjct: 4 LDNNGGCSHV-CNDLKIGYECLCPDGFQLVA-QRRCEDIDECQ-DPDTCS-QLCVNLEGG 59
Query: 140 FQ 141
++
Sbjct: 60 YK 61
Score = 43.7 bits (102), Expect = 7e-06
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
++P C+ C NL G Y+C C G++ DP K C K T
Sbjct: 44 QDPDTCS-QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 141 QSNFQD 146
+
Sbjct: 103 EYTSLI 108
Score = 28.3 bits (62), Expect = 1.1
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENPGI---CTNGACENL----------MGTYR 99
D+ L L P H N +NG C+ L +
Sbjct: 321 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFT 380
Query: 100 CICNPGYEGDPTGKLC 115
C C G + C
Sbjct: 381 CACPDGMLLARDMRSC 396
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 42.4 bits (99), Expect = 2e-05
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENL------MGTYRCICNPGY 106
+ L + + P NP NG C +L Y+C C G
Sbjct: 239 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGV 298
Query: 107 EGDPTGKLCSDQNEC 121
+ GK C D N
Sbjct: 299 KLLENGKTCKDGNSH 313
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 42.2 bits (98), Expect = 2e-05
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
G C+ G C N G ++C C GYE P + C + + + P
Sbjct: 5 AEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 63
Query: 141 Q 141
+
Sbjct: 64 E 64
Score = 32.5 bits (73), Expect = 0.036
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENL----MGTYRCICNPGYE 107
++ E ++ L P +H +N NG C +L Y C C G+
Sbjct: 276 GKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFR 334
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 38.8 bits (91), Expect = 1e-04
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLC-SDQNECLMDVMICS-GGT---CKNTPGS 139
C NG C++ + +Y C C P + G+ C + +++ L+ + GG C + G+
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDDQLIC--VNENGGCEQYCSDHTGT 108
Query: 140 F 140
Sbjct: 109 K 109
Score = 28.4 bits (64), Expect = 0.55
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 8/41 (19%)
Query: 86 CTNGACE-----NLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE + C C+ GY G C
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC---TPT 130
Score = 27.7 bits (62), Expect = 0.99
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLC-SDQNECLMDVMICSGGTCKNTPGSFQ 141
C C + + SD ++C +GG+CK+ S+
Sbjct: 17 CKEEQCSFEEAREIFKDAERTK---LFWISYSDGDQCASS-PCQNGGSCKDQLQSYI 69
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGGTCKNTPGSFQ 141
NG+C++ + Y C C+PGYE G C +NEC + C S+
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYE----GSNCELAKNECHPERTDGCQHFCLPGQESYT 66
Score = 31.2 bits (71), Expect = 0.093
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGS 139
E C + C +Y C C GY K C ++C V+
Sbjct: 48 PERTDGCQHF-CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD--LQD 104
Query: 140 F 140
Sbjct: 105 L 105
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 35.4 bits (82), Expect = 5e-04
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
C + C C GY GK C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 37.2 bits (86), Expect = 6e-04
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 79 TTENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQN 119
+ C N +G + C C GY + CS+Q+
Sbjct: 129 VAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQS 169
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 34.8 bits (81), Expect = 6e-04
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 82 NPGICTNGA-CENLMGTYRCICNPGYEGD 109
NP C NG C++ + +Y C C G+EG
Sbjct: 9 NP--CLNGGSCKDDINSYECWCPFGFEGK 35
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 36.6 bits (85), Expect = 8e-04
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNEC 121
C NG C +L+ Y C C + G+ C
Sbjct: 105 CKNGGICTDLVANYSCECPGEF----MGRNCQYKGGGH 138
Score = 36.6 bits (85), Expect = 8e-04
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 81 ENPGICTN--GACENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICS-GGTCKNT 136
N G C + Y C C G+ G C + NEC ++ C GG C +
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGF----NGIHCQHNINECEVE--PCKNGGICTDL 114
Query: 137 PGSFQ 141
++
Sbjct: 115 VANYS 119
Score = 34.7 bits (80), Expect = 0.004
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC-SDQNECLMDVMICSGGTCKNTP 137
EN GIC G + ++ C C G+ T C S + S G C P
Sbjct: 9 ENGGICLPGLADG---SFSCECPDGF----TDPNCSSVVEVASDEEEPTSAGPCTPNP 59
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 33.5 bits (77), Expect = 0.002
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
C RC C GY K C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.002
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 40/119 (33%)
Query: 10 LTEGRLR--IKGVSKHSR---LAVALRRSISIDEFTVHSSTLIAL-------SQES---- 53
T G LR +KG + HS+ AVA+ + S + F V I + E+
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 54 -------QDLERLKFGLEPPT--------SRSEVH----GANHHTTENPGIC---TNGA 90
+D G P+ ++ +V N H + NGA
Sbjct: 318 SLPPSILEDSLENNEG--VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 35.4 bits (82), Expect = 0.003
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGGTCKNT-PGSFQ 141
C +G C ++C+C + G+LC D N C +GGTC NT P +Q
Sbjct: 105 CVHGICNE---PWQCLCETNW----GGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQ 155
Score = 33.5 bits (77), Expect = 0.012
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 85 ICTNGACEN---LMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGS 139
+ + + + G C+ Y G C+ D G + G+
Sbjct: 1 MRGSHHHHHHGSIEGRSAVTCDDYY----YGFGCNKFCRPRDD---FFGHYACDQNGN 51
Score = 29.3 bits (66), Expect = 0.33
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 86 CTNGA-CENL-MGTYRCICNPGYEGD 109
C NG C N Y+C C GY G
Sbjct: 140 CLNGGTCSNTGPDKYQCSCPEGYSGP 165
Score = 29.3 bits (66), Expect = 0.37
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 85 ICTNGACENLMGT----YRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKN 135
IC G G+ C C G+ G C ++C+ C G C
Sbjct: 67 ICRQGCSPK-HGSCKLPGDCRCQYGW----QGLYC---DKCIPH-PGCVHGICNE 112
Score = 25.4 bits (56), Expect = 7.9
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 8/50 (16%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKN 135
+ C G+ G C ++ C G+CK
Sbjct: 40 FFGHYACD--QNGNKTCMEGW----MGPEC-NRAICRQGCSPK-HGSCKL 81
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 33.2 bits (76), Expect = 0.003
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQ 118
C N +G Y C C PGYE C +
Sbjct: 26 CHNYVGGYFCSCRPGYELQEDRHSCQAE 53
Score = 23.6 bits (51), Expect = 9.5
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 7/32 (21%)
Query: 117 DQNECLMDVMICSGG-------TCKNTPGSFQ 141
D +EC C N G +
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYF 34
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 34.3 bits (78), Expect = 0.010
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNTPGS 139
+ C NG + C+C+PG+ G C + M I + G
Sbjct: 290 KLRCSCNNGEMCD--RFQGCLCSPGW----QGLQCEREGIPRMTPKIVDLPDHIEVNSGK 343
Query: 140 FQ 141
F
Sbjct: 344 FN 345
Score = 31.6 bits (71), Expect = 0.081
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 16/67 (23%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGD---------PTGKLCSDQNECLMDVMICSGG 131
C + Y C C G++G G C + C +G
Sbjct: 247 SGQEGCKSYVFCL-PDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCN------NGE 299
Query: 132 TCKNTPG 138
C G
Sbjct: 300 MCDRFQG 306
Score = 27.0 bits (59), Expect = 2.9
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 5/67 (7%)
Query: 80 TENPGICTNGACENLMGTYRCICN-PGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPG 138
+ E G + IC G+ + D + +T
Sbjct: 326 MTPKIVDLPDHIEVNSGKFNPICKASGW----PLPTNEEMTLVKPDGTVLHPKDFNHTDH 381
Query: 139 SFQSNFQ 145
+ F
Sbjct: 382 FSVAIFT 388
Score = 27.0 bits (59), Expect = 3.2
Identities = 16/62 (25%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCSD-------QNECLMDVMICSGGTCKNTP 137
C N C T CIC PG+ G K C + C S C P
Sbjct: 205 CMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDP 262
Query: 138 GS 139
Sbjct: 263 YG 264
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 34.0 bits (77), Expect = 0.011
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 88 NGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQSNFQDS 147
+ C + + C C Y G+ G+ C + G F+++
Sbjct: 18 HAECRDYATGFCCRCVANYTGN--GRQCVAEGSPQRVNGKVK-GRIFVGSSQVPVVFENT 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.013
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 15/43 (34%)
Query: 52 ESQDLERLKFGLEP--PTSRSEVHGANHHTTENPGICTNGACE 92
E Q L++L+ L+ S A P + E
Sbjct: 18 EKQALKKLQASLKLYADDS------A-------PALAIKATME 47
Score = 29.9 bits (66), Expect = 0.24
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 134 KNTPGSFQSNFQ----DSSPILKI 153
K Q++ + DS+P L I
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 33.9 bits (77), Expect = 0.014
Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENP---GICTNGACENL----------MGTYR 99
D+ L L P H N +NG C+ L +
Sbjct: 239 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFT 298
Query: 100 CICNPGYEGDPTGKLC 115
C C G + C
Sbjct: 299 CACPDGMLLARDMRSC 314
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 32.5 bits (74), Expect = 0.014
Identities = 10/45 (22%), Positives = 11/45 (24%), Gaps = 7/45 (15%)
Query: 96 GTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNTPGS 139
C CN G C C GGTC+
Sbjct: 30 RVEYCWCNSGR----AQCHSVPVKSCSEP--RCFNGGTCQQALYF 68
Score = 25.9 bits (57), Expect = 2.9
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 86 CTNGA-CENL--MGTYRCICNPGYEGD 109
C NG C+ + C C G+ G
Sbjct: 56 CFNGGTCQQALYFSDFVCQCPEGFAGK 82
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 32.5 bits (74), Expect = 0.027
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 79 TTENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
T+ + + C N +G Y C C P Y L D C
Sbjct: 120 CTDFVDVPCSHFCNNFIGGYFCSCPPEYF------LHDDMKNC 156
Score = 26.3 bits (58), Expect = 4.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 115 CSDQNECLMDVMICSGGTCKNTPGSFQSN 143
+D NEC V + C N G + +
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCS 142
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 32.8 bits (75), Expect = 0.028
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 88 NGACENLM----GTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
C++ +Y C C GY K C ++C V+
Sbjct: 10 TDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD--LQDL 64
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 32.6 bits (74), Expect = 0.033
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 56 LERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENLMGTYRCICNPGYEGDPT---- 111
+ K L P R+ V A T+E +C NG C T +C C+PG+EGD
Sbjct: 369 IVDPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTP---TGKCCCSPGWEGDFCRTAK 425
Query: 112 -------GKLCSDQNECLMDVMICSGGTCK 134
G +C N+CL G C+
Sbjct: 426 CEPACRHGGVCVRPNKCLCKKGY-LGPQCE 454
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 32.9 bits (74), Expect = 0.039
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTE----NPGICTNGACENLMGTYRCICNPGYEG 108
Q+ ++ L+ H + + G C++ +G + C C Y
Sbjct: 238 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSL 297
Query: 109 DPTGKLCSDQNECLMDVM 126
+ + CS L+
Sbjct: 298 NADNRTCSAPTTFLLFSQ 315
Score = 29.8 bits (66), Expect = 0.41
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHT-TENPGICTNGACENL-----MGTYRCICNPGY 106
+ +++ + + V N ++P NG C ++ GT RC C
Sbjct: 550 REGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHL 609
Query: 107 EGDPTGKLC-SDQNEC 121
C ++
Sbjct: 610 VLLQDELSCGGTKHHH 625
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 31.7 bits (71), Expect = 0.088
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 42 HSSTLIALSQESQDLERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENL----MGT 97
++ + + S + E + L + + NP NG C +L
Sbjct: 540 QRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGS-NPCAEENGGCSHLCLYRPQG 598
Query: 98 YRCICNPGYEGDPTGKLC 115
RC C G+E K C
Sbjct: 599 LRCACPIGFELISDMKTC 616
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 31.4 bits (71), Expect = 0.095
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 79 TTENPGICTNGA-CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNT 136
C NG C +CIC PG G+ C ++C C GG C
Sbjct: 212 KANCSTTCFNGGTCFY---PGKCICPPGL----EGEQCE-ISKCPQP---CRNGGKCIGK 260
Score = 30.6 bits (69), Expect = 0.16
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 73 HGANHHTTENPGICTNGA-CENLMGTYRCICNPGYEGDPTGKLCS---DQNECLMDVMIC 128
G ++ P C NG C +G +C C+ GY G LCS + C
Sbjct: 238 EGEQCEISKCPQPCRNGGKC---IGKSKCKCSKGY----QGDLCSKPVCEPGC------G 284
Query: 129 SGGTCKNT 136
+ GTC
Sbjct: 285 AHGTCHEP 292
Score = 30.2 bits (68), Expect = 0.24
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 12/50 (24%)
Query: 88 NGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNT 136
G C CIC PG+ G C D+ C C GGTC
Sbjct: 190 GGLCVT---PGFCICPPGF----YGVNC-DKANCSTT---CFNGGTCFYP 228
Score = 28.7 bits (64), Expect = 0.78
Identities = 10/52 (19%), Positives = 11/52 (21%), Gaps = 9/52 (17%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNT 136
+ T K C Q EC C GG C
Sbjct: 121 VDVIVMNSEGNTILKTPQNAI----FFKTC-QQAECPGG---CRNGGFCNER 164
Score = 28.7 bits (64), Expect = 0.82
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 9/48 (18%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCS-DQNECLMDVMICSGG 131
C C +C C G+ G+ C+ L+
Sbjct: 283 CGAHGTCHE---PNKCQCQEGW----HGRHCNKRYEASLIGTKHHHHH 323
Score = 27.5 bits (61), Expect = 2.1
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 83 PGICTNGA-CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS-GGTCKNT 136
PG C NG C C C G+ G C ++ C C GG C
Sbjct: 152 PGGCRNGGFCNE---RRICECPDGF----HGPHC-EKALCTPR---CMNGGLCVTP 196
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.8 bits (69), Expect = 0.15
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCS-DQNECL-MDVMICSG-GTCKN 135
G C G +C+C+ G TGK C D C+ +CSG G C
Sbjct: 497 QRGECLCG---------QCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC 544
Score = 29.3 bits (65), Expect = 0.56
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 10/55 (18%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSG-GTCKN 135
G C+ G C+C+ + G + ++CSG G C+
Sbjct: 538 GHGQCSCG---------DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC 583
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
N C + + + + + + G C+ +NE
Sbjct: 630 TCNRYCRDEIESVKELKDTGK----DAVNCTYKNED 661
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 28.2 bits (63), Expect = 0.17
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 86 CTNGACENL--MGTYRCICNPGYEG 108
C G C + T C+C+ GY G
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIG 40
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 28.2 bits (63), Expect = 0.19
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 80 TENPGICTNGACENL--MGTYRCICNPGYEG 108
+ C +G C L C+C+ GY G
Sbjct: 10 DSHTQFCFHGTCRFLVQEDKPACVCHSGYVG 40
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.6 bits (68), Expect = 0.19
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 13/111 (11%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENP---GICTNGACENL----------MGTYR 99
D+ L L P H N +NG C+ L +
Sbjct: 633 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFT 692
Query: 100 CICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSFQSNFQDSSPI 150
C C G + C + E + S K + + ++ + P+
Sbjct: 693 CACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPV 743
Score = 26.0 bits (56), Expect = 7.2
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 98 YRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTC 133
++ G + + C + C G C
Sbjct: 3 WKLRWTVALLLAAAG--TAVGDRCERNEFQCQDGKC 36
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 29.3 bits (65), Expect = 0.21
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 2/68 (2%)
Query: 78 HTTENPGICTNGACE-NLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSG-GTCKN 135
H N C +L C C Y+ + + + C + C C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 136 TPGSFQSN 143
Sbjct: 65 EDSGSNGK 72
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.2 bits (67), Expect = 0.25
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 13/82 (15%)
Query: 53 SQDLERLKFGLEPPTSRSEVHGANHHTTENP---GICTNGACENL----------MGTYR 99
D+ L L P H N +NG C+ L +
Sbjct: 615 GSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFT 674
Query: 100 CICNPGYEGDPTGKLCSDQNEC 121
C C G + C + E
Sbjct: 675 CACPDGMLLARDMRSCLTEAEA 696
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 28.5 bits (63), Expect = 0.28
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 86 CTNGACENL--MGTYRCICNPGYEGD 109
C +G C+ + + CIC+PGY G+
Sbjct: 48 CIHGECKYVKELRAPSCICHPGYHGE 73
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.3 bits (66), Expect = 0.30
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 80 TENPGICTN-GACENLMGTYRCICNPGYEGD 109
C+ G C + Y C C+PG+ G
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 27.5 bits (61), Expect = 0.31
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 84 GICTNGACENL--MGTYRCICNPGYEGD 109
G C +G C L M C C GY G
Sbjct: 12 GYCLHGQCIYLVDMSQNYCRCEVGYTGV 39
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 29.3 bits (65), Expect = 0.47
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 88 NGACENLMGTYRCICNPGYEGD-------PTGKLCSDQNECLMDVMICSGGTCKNTPG 138
G C +C C+PG+EG G L + EC C C+ G
Sbjct: 532 RGLCFC----GKCRCHPGFEGSACQCERTTEGCLNPRRVEC-SGRGRCRCNVCECHSG 584
Score = 27.4 bits (60), Expect = 2.4
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 13/58 (22%)
Query: 81 ENPGICTN-GACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSG-GTCKNT 136
C+ G C C C+ GY LC + C C +C
Sbjct: 563 PRRVECSGRGRCR----CNVCECHSGY----QLPLCQECPGCPSP---CGKYISCAEC 609
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.6 bits (64), Expect = 0.51
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 80 TENPGICTN-GACENLMGTYRCICNPGYEGD 109
+ P C+ G C ++ Y C C+ GY G
Sbjct: 121 SCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 0.53
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 86 CTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNT 136
+ G+ + C P T ++ C +GGTC N
Sbjct: 338 WSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQ------NGGTCHNN 382
Score = 27.1 bits (59), Expect = 3.1
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 12/58 (20%)
Query: 73 HGANHHTTENPGICTNGA-CENLMGTYRCICNPGYEG--------DPTGKLCSDQNEC 121
+ C NG C N RC+C Y G + G SD +
Sbjct: 360 SIGTNVCDNELLHCQNGGTCHN---NVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQG 414
Score = 26.7 bits (58), Expect = 3.3
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 7/57 (12%)
Query: 86 CTNGA--CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
C A C C C TG C + + S G+ P
Sbjct: 299 CNLHATVCVYDNSKLTCECEHNT----TGPDC-GKCKKNYQGRPWSPGSYLPIPKGA 350
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 26.7 bits (59), Expect = 0.67
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 80 TENPGICTNGA-CENL--MGTYRCICNPGYEGD 109
+ G C NG C ++ + +Y C C GY GD
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 28.7 bits (64), Expect = 0.68
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGS 139
E+ + + C N +G Y C C GY + C + CS G
Sbjct: 127 REDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVE---------CSDNLFTQRTGV 177
Query: 140 FQS 142
S
Sbjct: 178 ITS 180
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.8 bits (61), Expect = 0.75
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 78 HTTENPGICTNGACENLM-GTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSG-GTCKN 135
H + + N AC + GT C G++ GK C + C+ C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV-GGKCVPASITCEENNGGCAPEAECTM 69
Query: 136 TPGS 139
Sbjct: 70 DDKK 73
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.7 bits (63), Expect = 0.82
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 87 TNGACENLMGTY---RCICNPGYEGDPTGKLCS-DQNECLM 123
C + G C C PG G+LC E L
Sbjct: 465 QAPHCSDGQGHLQCGVCSCAPGR----LGRLCESRGLENLY 501
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 28.7 bits (63), Expect = 0.85
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 82 NPGICTNGA-CENLMGTYRCIC-NPGYEGDPTGKLCSDQ 118
G+C NG C + C C G+ G + +
Sbjct: 194 EGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEY 232
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 27.3 bits (60), Expect = 0.91
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 78 HTTENPGICTNGAC-ENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICS 129
H + + N AC L GT C ++ D + + C C+
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCA 57
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 28.2 bits (64), Expect = 1.00
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 1/31 (3%)
Query: 4 NANANMLTEGRLRIKGVSKHSRLAVALRRSI 34
+A L+ L L V S
Sbjct: 59 LDSAEQLS-DYLLEHYPQPGVCLGVYGEYSR 88
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 28.4 bits (63), Expect = 1.1
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTPGSF 140
E+ + + C N +G Y C C GY + C + CS G
Sbjct: 128 EDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR---------VECSDNLFTQRTGVI 178
Query: 141 QS 142
S
Sbjct: 179 TS 180
Score = 25.3 bits (55), Expect = 10.0
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 78 HTTENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD-QNECLMD 124
+ I + A C+ GY+ Q ECL D
Sbjct: 286 QPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKD 333
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.8 bits (62), Expect = 1.2
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 78 HTTENPGICTNGACENLMGTYRCICNPGYEGD 109
+ G C G Y C C PG+ G
Sbjct: 125 MSCSKQGECLETI-----GNYTCSCYPGFYGP 151
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 27.7 bits (62), Expect = 1.9
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 85 ICTNGACENLMGTYRCICNPG 105
+ GA C+ +PG
Sbjct: 112 VMAGGATGANETIIFCLADPG 132
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 27.3 bits (61), Expect = 2.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 85 ICTNGACENLMGTYRCICNPG 105
+ T GA C+ +PG
Sbjct: 115 VLTAGATSANETFIFCLADPG 135
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 85 ICTNGACENLMGTYRCICNPGYE 107
+ TNG E ++ ++ I NPG E
Sbjct: 106 LVTNGGSEAILFSFAVIANPGDE 128
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 27.2 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 4 NANANMLTEGRLRIKGVSKHSRLAVALRRSI 34
+ AN + RL+ G K S +A+ +RS+
Sbjct: 496 DEEANRIA-RRLQKHGAGKGSVVALYTKRSL 525
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 25.2 bits (55), Expect = 2.9
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 84 GICTN-GACENL--MGTYRCICNPGYEGD 109
G C + G C + + Y C C GY G+
Sbjct: 12 GYCLHDGVCMYIEALDKYACNCVVGYIGE 40
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 26.7 bits (60), Expect = 2.9
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 69 RSEVHGANHHTTENPG--ICTNGACENLMGTYRCICNPG 105
+ V + +T P + TNGA + + PG
Sbjct: 69 KKSV--SQLYTGVKPEQILQTNGATGANLLVLYSLIEPG 105
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 19/70 (27%)
Query: 84 GICTNGACENLMGTYRCICNPGYEGD----------PTGKLCSDQNECLMDVMICSGGTC 133
G C +G C C+ GY + + + +GG
Sbjct: 202 GDCISG---------VCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKITGGQV 252
Query: 134 KNTPGSFQSN 143
G+
Sbjct: 253 GTGCGTLNDG 262
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 24.7 bits (54), Expect = 4.2
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 88 NGACENL-----MGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE C C+ GY G C+ E
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 25.1 bits (55), Expect = 4.3
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 88 NGACE-----NLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE + C C+ GY G C+ E
Sbjct: 12 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 26.4 bits (57), Expect = 4.7
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 81 ENPGICTNGACENLMGTY---RCICNPGYEGDPTGKLC 115
+ + C N GT+ C C PG+ G C
Sbjct: 438 QAQAEPNSHRCNNGNGTFECGVCRCGPGW----LGSQC 471
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 26.0 bits (56), Expect = 5.6
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 76 NHHTTENPGICT-NGACENLMGTYRCICNPGYEGD----PTGKLCSDQNECLM----DVM 126
+ + +C G E C C+ GY G T S + E + +
Sbjct: 188 CRDQSRDRSLCHGKGFLEC----GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSI 243
Query: 127 ICSG-GTC 133
ICSG G C
Sbjct: 244 ICSGLGDC 251
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 25.9 bits (58), Expect = 6.2
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 85 ICTNGACENLMGTYRCICNPGYE 107
+ GA + + G E
Sbjct: 91 MVLLGANQAFLMGLSAFLKDGEE 113
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
AMP-forming domain, adenylation, D-alanine protein
ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus}
PDB: 3fcc_A* 3dhv_A*
Length = 512
Score = 25.9 bits (58), Expect = 6.8
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 4 NANANMLTEGRLRIKGVSKHSRLAVALRRSI 34
+++ L + + S + V
Sbjct: 33 KEDSDALA-HWISSEYPDDRSPIMVYGHMQP 62
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 24.3 bits (52), Expect = 7.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGD 109
N G C + Y C C PG+ G
Sbjct: 16 NGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 25.7 bits (56), Expect = 7.2
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 84 GICTNGAC--------ENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKN 135
G C G C L+ C C+ G++C +C G C+
Sbjct: 149 GDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG-----LCFCGKCRC 203
Query: 136 TPG 138
PG
Sbjct: 204 HPG 206
Score = 25.3 bits (55), Expect = 9.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 76 NHHTTENPGICTNGACENLMGTYRCICNPGYEGD 109
+ + G G C +C C+PG+EG
Sbjct: 181 ERYNGQVCGGPGRGLCFC----GKCRCHPGFEGS 210
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 25.6 bits (57), Expect = 8.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 85 ICTNGACENLMGTYRCICNPGYE 107
I T G+ L I + G E
Sbjct: 93 IITGGSSLGLFFALSSIIDDGDE 115
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 24.0 bits (52), Expect = 8.2
Identities = 10/39 (25%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 88 NGACE-----NLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE + C C GY K C
Sbjct: 6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 25.7 bits (56), Expect = 8.5
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGDPTGKLCSDQNECLMDVMICSGGTCKNTP 137
C+N C + C C+ +G LC+D + T K P
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTS---FSGPLCNDPGTTYIFSKGGGQITYKWPP 242
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 25.6 bits (57), Expect = 9.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 85 ICTNGACENLMGTYRCICNPGYE 107
T GA +L +R + + Y+
Sbjct: 103 YMTMGAAASLSICFRALTSDAYD 125
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 23.7 bits (51), Expect = 9.4
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 86 CTNGACENL--MGTYRCICNPGYEG 108
C +G C+ + + C C Y G
Sbjct: 20 CIHGECKYIEHLEAVTCKCQQEYFG 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,211,080
Number of extensions: 121447
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 223
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)