RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7854
(153 letters)
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 46.7 bits (111), Expect = 8e-09
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGD-PTGKLC 115
+P +C G C N G + C C+ GYE K C
Sbjct: 7 RISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
Score = 33.3 bits (76), Expect = 8e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSFQ 141
+D +EC + +C G C NTPG F+
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFE 26
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 46.7 bits (111), Expect = 8e-09
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
+P +C G C N G+YRC C PG++ P C
Sbjct: 6 QRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41
Score = 33.6 bits (77), Expect = 6e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC D ++C GG C NT GS++
Sbjct: 1 DIDECQRDPLLCRGGVCHNTEGSYR 25
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 45.9 bits (109), Expect = 1e-08
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 80 TENPGICTNGACENLMGTYRCICNPGYEGDPTGKLC 115
E PG+C G C N G+++C C GY + ++C
Sbjct: 7 QELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42
Score = 33.2 bits (76), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC +C GG C NT GSFQ
Sbjct: 2 DIDECQELPGLCQGGKCINTFGSFQ 26
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 43.7 bits (103), Expect = 1e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD 117
+P C +G C N G+Y C C P +E +PT C D
Sbjct: 7 LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43
Score = 27.5 bits (61), Expect = 0.13
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 116 SDQNECLMDVMICSGGTCKNTPGSFQ 141
+D NECL SG C NTPGS+
Sbjct: 1 TDVNECLDPTTCISG-NCVNTPGSYI 25
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 39.7 bits (93), Expect = 4e-06
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD 117
+ P +C +G C N G+YRC C GY G C D
Sbjct: 9 KEPDVCKHGQCINTDGSYRCECPFGYILA--GNECVD 43
Score = 29.0 bits (65), Expect = 0.034
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 115 CSDQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC +C G C NT GS++
Sbjct: 2 AVDMDECKEP-DVCKHGQCINTDGSYR 27
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 38.4 bits (89), Expect = 2e-05
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 76 NHHTTENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSDQ 118
+ E+P C N +G Y C C PGYE C +
Sbjct: 11 SKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQAE 53
Score = 24.2 bits (52), Expect = 2.2
Identities = 6/32 (18%), Positives = 8/32 (25%), Gaps = 7/32 (21%)
Query: 117 DQNECLMDVMICSGG-------TCKNTPGSFQ 141
D +EC C N G +
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYF 34
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 37.8 bits (88), Expect = 2e-05
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGDPTGKLCSD 117
++P C + C NL G Y+C C G++ DP K C
Sbjct: 5 QDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKA 40
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 36.8 bits (85), Expect = 5e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQ 118
C N +G + C C GY + CS+Q
Sbjct: 18 CHNHLGGFYCSCRAGYVLHRNKRTCSEQ 45
Score = 23.7 bits (51), Expect = 3.2
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 119 NECLMDVMICSG--GTCKNTPGSFQ 141
+EC + C N G F
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFY 26
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 35.6 bits (82), Expect = 2e-04
Identities = 8/31 (25%), Positives = 8/31 (25%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
C RC C GY K C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 34.7 bits (80), Expect = 2e-04
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 80 TENPGICTNGA-CENLMGTYRCICNPGYEGD 109
+ C + C N +G++ C C GY G
Sbjct: 7 SLGANPCEHAGKCINTLGSFECQCLQGYTGP 37
Score = 27.4 bits (61), Expect = 0.13
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 117 DQNECLMDVMICS-GGTCKNTPGSFQ 141
D +EC + C G C NT GSF+
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFE 27
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 34.4 bits (79), Expect = 3e-04
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYEGD-PTGKLC 115
EN G C +G C NL GT+ CIC P G C
Sbjct: 6 ENGGFC-SGVCHNLPGTFECICGPDSALAGQIGTDC 40
Score = 22.4 bits (48), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 117 DQNECLMDVMICSGGTCKNTPGSFQ 141
D +EC CSG C N PG+F+
Sbjct: 1 DIDECENG-GFCSG-VCHNLPGTFE 23
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 33.3 bits (76), Expect = 7e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 80 TENPGIC-TNGACENLMGTYRCICNPGYEGDPTGKLCSDQ 118
N C + C + + C C Y G+ G+ C +
Sbjct: 3 ANNRHQCSVHAECRDYATGFCCRCVANYTGN--GRQCVAE 40
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 33.1 bits (76), Expect = 8e-04
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C NG C++ + +Y C C G+EG
Sbjct: 11 CLNGGSCKDDINSYECWCPFGFEGK 35
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 33.2 bits (76), Expect = 0.001
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
C + C C GY GK C
Sbjct: 14 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 44
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 33.0 bits (75), Expect = 0.001
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCS 116
C N +G Y C C GY CS
Sbjct: 18 CHNYLGGYYCSCRVGYILHQNKHTCS 43
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 32.7 bits (75), Expect = 0.001
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C N A C + +G ++CIC PGYEG
Sbjct: 9 CQNDATCLDQIGEFQCICMPGYEGV 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 32.7 bits (75), Expect = 0.001
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C N C++ +G Y C C G+EG
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGK 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 32.7 bits (75), Expect = 0.001
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C NG C++ + +Y C C P +EG
Sbjct: 10 CQNGGSCKDQLQSYICFCLPAFEGR 34
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 32.5 bits (74), Expect = 0.002
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 86 CTNGACENLMGTYRCICNPGYEGD 109
C +G C + +G++ C C G+EG
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWEGR 39
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 32.0 bits (73), Expect = 0.002
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C + C + + ++C C G+ G
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGH 32
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 32.5 bits (74), Expect = 0.002
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLCSDQNEC 121
C +G RC C PGY+ C +
Sbjct: 13 CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 31.4 bits (71), Expect = 0.004
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 85 ICTNGACENLMGTYRCICNPGYEGDPT 111
C NG C+N++G + C C G+E P
Sbjct: 9 PCGNGTCKNVIGGFECTCEEGFEPGPM 35
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 31.4 bits (71), Expect = 0.005
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLC 115
C N +G Y C C P Y K C
Sbjct: 15 CNNFIGGYFCSCPPEYFLHDDMKNC 39
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 30.5 bits (69), Expect = 0.010
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 84 GICTNGACENL--MGTYRCICNPGYEGD 109
G C +G C L M C C GY G
Sbjct: 12 GYCLHGQCIYLVDMSQNYCRCEVGYTGV 39
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 29.7 bits (67), Expect = 0.018
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C+ C + Y C C+PG+ G
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGL 33
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 29.4 bits (66), Expect = 0.021
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 86 CTNGA-CENLMGTYRCICNPGYEGD 109
C+ C +G Y C C PG+ G
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGP 33
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 49
Score = 29.4 bits (66), Expect = 0.029
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 79 TTENPGICTNGACENL--MGTYRCICNPGYEGD 109
+ C +G C L C+C+ GY G
Sbjct: 8 PDSHTQFCFHGTCRFLVQEDKPACVCHSGYVGA 40
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 29.6 bits (66), Expect = 0.033
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGD 109
N G C + Y C C PG+ G
Sbjct: 16 NGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 29.0 bits (65), Expect = 0.048
Identities = 10/39 (25%), Positives = 10/39 (25%), Gaps = 5/39 (12%)
Query: 88 NGACENL-----MGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE C C GY K C
Sbjct: 7 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 50
Score = 28.3 bits (63), Expect = 0.062
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 84 GICTNGACENL--MGTYRCICNPGYEGD 109
C G C + T C+C+ GY G
Sbjct: 14 HYCIKGRCRFVVAEQTPSCVCDEGYIGA 41
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 28.3 bits (63), Expect = 0.067
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 81 ENPGICTNGA-CENL--MGTYRCICNPGYEGD 109
G C NG C ++ + +Y C C GY GD
Sbjct: 9 SYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 28.2 bits (63), Expect = 0.069
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 84 GICTNGACENL--MGTYRCICNPGYEGD 109
C +G C+ + + CIC+PGY G+
Sbjct: 8 DFCIHGECKYVKELRAPSCICHPGYHGE 35
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 28.2 bits (63), Expect = 0.080
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 88 NGACENL-----MGTYRCICNPGYEGDPTGKLCSDQNEC 121
NG CE C C+ GY G C+ E
Sbjct: 6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 27.8 bits (62), Expect = 0.087
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 81 ENPGICTNGACENLMGTYRCICNPGYE 107
+N G C++ C +L Y C+C G++
Sbjct: 7 DNNGGCSHV-CNDLKIGYECLCPDGFQ 32
Score = 22.4 bits (48), Expect = 6.8
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 119 NECLMDVMICSGGTCKNTPGSFQ 141
NECL + CS C + ++
Sbjct: 3 NECLDNNGGCSH-VCNDLKIGYE 24
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 26.1 bits (57), Expect = 0.41
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 91 CENLMGTYRCICNPGYEGDPTGKLC 115
+ C C G + C
Sbjct: 24 INPHSPKFTCACPDGMLLARDMRSC 48
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 26.0 bits (57), Expect = 0.43
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 82 NPGICTNGA-CENL--MGTYRCICNPGYEGD 109
+ G C + C + + Y C C GY G+
Sbjct: 8 HDGYCLHDGVCMYIEALDKYACNCVVGYIGE 38
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 24.4 bits (53), Expect = 1.6
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 82 NPGICTNGACENLMGTYRCICNPGYEGD 109
N G C + + C C G+ G
Sbjct: 8 NGGTCQQALYFS---DFVCQCPEGFAGK 32
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 25.5 bits (56), Expect = 3.1
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 77 HHTTENPGICTNGACE-NLMGTYRCICNPGYEGDPTGKL 114
++ G CT C +L+ + P P +L
Sbjct: 21 CAQSQQDGPCTPRRCLGSLVLPRKLQTRPSPGPPPAEQL 59
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 24.5 bits (52), Expect = 6.3
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 25 RLAVALRRSISIDEFTVHSSTLIALSQESQDLERLKFGLEPP 66
RL + R + + + + + +++ L F EP
Sbjct: 415 RLTIP-RATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPK 455
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human
(Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 22.9 bits (48), Expect = 9.4
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 39 FTVHSSTLIALSQESQDLERLKFGLEPPTSRSEVHGANHHTTENPGICTNGACENLMGTY 98
+ L ++S L+ S H + +++ + A N G Y
Sbjct: 8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEY 67
Query: 99 RC 100
RC
Sbjct: 68 RC 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,616
Number of extensions: 23834
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 86
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)