BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7859
         (455 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EPL|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPM|X Chain X, N-Acetyl-B-D-Glucoasminidase (Gcna) From Stretococcus
           Gordonii
 pdb|2EPN|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPN|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPO|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
 pdb|2EPO|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
          Length = 627

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 404 EIKEVLEDYSQD------QEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKA 450
           ++ +++ED+S        QE K+  L    +     LKR+K+ QE+LE+FI  
Sbjct: 531 QLYQMVEDFSDQFSRQWQQENKIFGLDTIDIRFGGLLKRIKRAQERLEQFISG 583


>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
           Campylobacter Jejuni.
 pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
           Campylobacter Jejuni
          Length = 403

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 355 IEEALRRHSWEHKDCCDVVLFWRIQQMLKVTSNALRQQIMNREARRLDKEIKEVLEDYSQ 414
           I  A+    +   + C V+L   + +  +++S    + +  R AR LDKEI    +   +
Sbjct: 42  IRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVXAKDVIGE 101

Query: 415 DQEKKMILLTGRRVTLAEELK 435
           D + K   L    + L E L+
Sbjct: 102 DAKTKAXNLKAGEILLLENLR 122


>pdb|2EPK|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
           Gordonii
          Length = 627

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 404 EIKEVLEDYSQD------QEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKA 450
           ++ + +ED+S        QE K+  L    +     LKR+K+ QE+LE+FI  
Sbjct: 531 QLYQXVEDFSDQFSRQWQQENKIFGLDTIDIRFGGLLKRIKRAQERLEQFISG 583


>pdb|3VA2|A Chain A, Crystal Structure Of Human Interleukin-5 In Complex With
           Its Alpha Receptor
 pdb|3VA2|B Chain B, Crystal Structure Of Human Interleukin-5 In Complex With
           Its Alpha Receptor
          Length = 119

 Score = 28.9 bits (63), Expect = 7.0,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 423 LTGRRVTLAEELKRVKQIQEKLEEFIKALNTE 454
           + G++    EE +RV Q  + L+EF+  +NTE
Sbjct: 83  IDGQKKKCGEERRRVNQFLDYLQEFLGVMNTE 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,029,307
Number of Sequences: 62578
Number of extensions: 511525
Number of successful extensions: 1475
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 21
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)