Query psy7859
Match_columns 455
No_of_seqs 78 out of 80
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 20:39:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q08_A Zn(II)-responsive regul 47.8 20 0.0007 28.3 4.3 50 403-452 20-73 (99)
2 3hh0_A Transcriptional regulat 42.5 35 0.0012 29.8 5.3 52 403-454 65-116 (146)
3 1t3j_A Mitofusin 1; coiled coi 41.4 30 0.001 29.3 4.5 60 377-437 29-90 (96)
4 1r8e_A Multidrug-efflux transp 40.0 31 0.0011 31.7 4.8 48 403-453 67-114 (278)
5 2w83_C C-JUN-amino-terminal ki 39.7 25 0.00084 28.9 3.5 51 404-454 23-73 (77)
6 3gpv_A Transcriptional regulat 35.2 52 0.0018 28.6 5.2 50 403-452 77-129 (148)
7 2gig_A Type II restriction enz 34.2 22 0.00076 34.0 2.8 28 151-178 222-249 (257)
8 3gp4_A Transcriptional regulat 33.6 68 0.0023 27.7 5.7 50 403-452 63-115 (142)
9 3fys_A Protein DEGV; fatty aci 32.9 59 0.002 31.9 5.8 104 230-350 70-182 (315)
10 2gd5_A Charged multivesicular 31.0 2.3E+02 0.008 25.2 9.0 62 380-452 17-81 (179)
11 3ebc_A Type-2 restriction enzy 27.5 32 0.0011 33.7 2.7 34 144-177 216-251 (317)
12 3sgf_H 50S ribosomal protein L 26.9 42 0.0014 29.9 3.3 66 104-179 7-77 (165)
13 2j01_J 50S ribosomal protein L 26.1 62 0.0021 28.9 4.2 64 104-179 5-75 (173)
14 1q06_A Transcriptional regulat 25.9 87 0.003 26.6 5.0 48 403-450 61-111 (135)
15 2w6a_A ARF GTPase-activating p 23.7 98 0.0034 24.4 4.3 28 377-410 28-55 (63)
16 3lup_A DEGV family protein; PS 22.8 89 0.003 30.0 4.9 104 230-350 39-151 (285)
17 2ahq_A Sigma-54, RNA polymeras 21.0 1.3E+02 0.0045 24.1 4.8 42 105-150 18-59 (76)
18 2b1u_A Calmodulin-like protein 20.5 1.2E+02 0.0039 21.0 4.0 42 110-154 6-48 (71)
19 2zhg_A Redox-sensitive transcr 20.5 83 0.0028 27.5 3.8 48 403-450 71-122 (154)
No 1
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=47.79 E-value=20 Score=28.35 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHHHHhccc----cHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy7859 403 KEIKEVLEDYSQ----DQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALN 452 (455)
Q Consensus 403 ~eik~vLd~~s~----d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~ 452 (455)
+|||++|+...+ +...-..+|..++-.|-+++..+..+...|+..+....
T Consensus 20 ~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 20 ESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899886632 23466789999999999999999999999998887653
No 2
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=42.49 E-value=35 Score=29.75 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=40.4
Q ss_pred HHHHHHHHhccccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7859 403 KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTE 454 (455)
Q Consensus 403 ~eik~vLd~~s~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~~e 454 (455)
++|+++|+.-..+......+|...+-.|.+++..+..+-+.|+..+..+..+
T Consensus 65 ~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~~ 116 (146)
T 3hh0_A 65 GEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE 116 (146)
T ss_dssp HHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3678888776666666677788888889999998888888888888777643
No 3
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.41 E-value=30 Score=29.29 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=32.3
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHhcc--ccHHHHhhhhccchhhhHHHHHHH
Q psy7859 377 RIQQMLKVTSNALRQQIMNREARRLDKEIKEVLEDYS--QDQEKKMILLTGRRVTLAEELKRV 437 (455)
Q Consensus 377 Riq~ml~~T~n~LRqqi~n~e~rrLe~eik~vLd~~s--~d~~~k~~lltGrrV~LAEeLk~v 437 (455)
-||+=|..|-+-|.+|+-.+ ...|+.||++.-.++. +.-..+-++|.++-+-|+-||...
T Consensus 29 QVQqELs~tfarLc~~Vd~t-~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMT-QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp ------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35677777777777777444 3334444443333322 123356678888888888887654
No 4
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=40.05 E-value=31 Score=31.71 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHhccccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy7859 403 KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNT 453 (455)
Q Consensus 403 ~eik~vLd~~s~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~~ 453 (455)
++||++|+.. ++.-..+|..++-+|.+++..++.+...|+..+..+..
T Consensus 67 ~~i~~~~~~~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 67 EEMKKAQDLE---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp HHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777654 45567889999999999999999999999988877653
No 5
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.75 E-value=25 Score=28.89 Aligned_cols=51 Identities=37% Similarity=0.320 Sum_probs=41.4
Q ss_pred HHHHHHHhccccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7859 404 EIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTE 454 (455)
Q Consensus 404 eik~vLd~~s~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~~e 454 (455)
+-|+.|+-.-+|=..++.=|||.+-.|-+||..+++...++++=+..|-.|
T Consensus 23 ~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 23 ETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999999999999999999999999998877666544
No 6
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.20 E-value=52 Score=28.58 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHHhcc---ccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy7859 403 KEIKEVLEDYS---QDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALN 452 (455)
Q Consensus 403 ~eik~vLd~~s---~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~ 452 (455)
++||++|+... .+......+|..++-+|.+++..+..+.+.|+..+..+.
T Consensus 77 ~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 77 QKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666331 234556678888999999999999999999988887654
No 7
>2gig_A Type II restriction enzyme hincii; protein DNA complex, indirect readout, DNA intercalation, endonuclease, hydrolase/DNA complex; 1.83A {Haemophilus influenzae} PDB: 2gih_A 2gii_A 2gij_A 3e3y_A 3e40_A 3e41_A 3e42_A 3e43_A 3e44_A 3e45_A 1tx3_A 1tw8_A 1kc6_A 1xhu_A 1xhv_A 2gie_A 2aud_A
Probab=34.21 E-value=22 Score=34.01 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=25.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhcccc
Q psy7859 151 KDCWDPVYRHHFLIQSLAKALDCKKGFY 178 (455)
Q Consensus 151 retW~~vYRrHFL~~al~~A~~CRs~ff 178 (455)
++.|...|-+||+.+|-.+|.+-+-+|-
T Consensus 222 k~eWa~~YlKHFV~~A~~Ra~~Mi~kFv 249 (257)
T 2gig_A 222 REEWAKSYLKHFVTQAEQRAISMIDKFV 249 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999887663
No 8
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=33.64 E-value=68 Score=27.75 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHHHHHHhc---cccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy7859 403 KEIKEVLEDY---SQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALN 452 (455)
Q Consensus 403 ~eik~vLd~~---s~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~ 452 (455)
++||++|+.. ..+......+|..++-.|.+++..+..+.+.|+..+....
T Consensus 63 ~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 63 EALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665543 1234556678888888888888888888888877776543
No 9
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=32.89 E-value=59 Score=31.89 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=66.2
Q ss_pred hcccccccchHHHHHHHhhhHHHHhhhccCCChhhHHHHHHHHHhhhhccchhhhhcccccccCCCCCcchhHHHhHhhh
Q psy7859 230 SFPRIRELDRDELFEKARGEILDEIVNLSQVSVQHWEEVLLTQLWNKVSNYVFETIYLPAAQSGNTNAFNTQMDIKLRQW 309 (455)
Q Consensus 230 ~fp~~reldRdELFekak~eild~v~~l~~~~~~~wE~~L~~klW~~i~~~v~~~IylpAaq~~s~~~Fnt~vDikL~~w 309 (455)
.|..-.+++.+|+|++-+.. .++..=|+.+|.+|.+... .+... .+.|+.=.-.|+=+|+||+..=
T Consensus 70 ~Y~D~~di~~~efy~~m~~~--~~~p~TSqPs~~~~~~~fe-----~l~~~-~~~Ii~I~iSS~LSGTy~sA~~------ 135 (315)
T 3fys_A 70 TYREEIELDWKSFYEEVKKH--NELPTTSQPPIGELVALYE-----ELGKS-YDAVISIHLSSGISGTFSSAAA------ 135 (315)
T ss_dssp EEEBTTTBCHHHHHHHHHTT--TCCCEEECCCHHHHHHHHH-----HHTTT-CSEEEEEESCTTTCSHHHHHHH------
T ss_pred EEECCCCCCHHHHHHHHHhC--CCCcccCCCCHHHHHHHHH-----HHHhc-CCcEEEEeCCCcHhHHHHHHHH------
Confidence 35555689999999998752 3567889999999977663 33333 3444433345566799999763
Q ss_pred hhhhccc--------hhHHHHHHHHHHHHHHHHHhhhcCC-CCchhhHHH
Q psy7859 310 ADQQLPL--------QSIEAGWEVLKAEFVNFFEKEKNSK-DHDGIFDNL 350 (455)
Q Consensus 310 a~~~Lp~--------~sve~gwetL~~eF~~~l~~~k~~~-d~d~ifd~L 350 (455)
|.+++|. +++-.|--.|..+..++.+. +. +-+.|.+.|
T Consensus 136 Aa~~~~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~---G~~s~eeI~~~l 182 (315)
T 3fys_A 136 ADSMVDNIDVYPFDSEISCLAQGFYALKAAELIKN---GASSPEDIIKEL 182 (315)
T ss_dssp GGGGCSSCEEEEEECSSCHHHHHHHHHHHHHHHHT---TCCCHHHHHHHH
T ss_pred HHHhCCCCCEEEECCchhHHHHHHHHHHHHHHHHc---CCCCHHHHHHHH
Confidence 3345564 45566666666666666654 33 444444444
No 10
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=31.00 E-value=2.3e+02 Score=25.20 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHhccccHHHHhhhhccchh---hhHHHHHHHHHHHHHHHHHHHHHh
Q psy7859 380 QMLKVTSNALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTGRRV---TLAEELKRVKQIQEKLEEFIKALN 452 (455)
Q Consensus 380 ~ml~~T~n~LRqqi~n~e~rrLe~eik~vLd~~s~d~~~k~~lltGrrV---~LAEeLk~vr~iqekLeef~~~L~ 452 (455)
+.|..+...| .++.++|+++-|.+-..+ |.-.-.|..- .+|.+|-+.|+...+|-..-..|+
T Consensus 17 ~~L~~~~r~L-----dr~~~kle~~ekk~~~~I------kka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~ 81 (179)
T 2gd5_A 17 LKIRKEMRVV-----DRQIRDIQREEEKVKRSV------KDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81 (179)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 345556666655554444 2222233321 389999999999999887655554
No 11
>3ebc_A Type-2 restriction enzyme hincii; intermediate, mutant, dimerization, R-loop, endonuclease, hydrolase; 2.55A {Haemophilus influenzae}
Probab=27.55 E-value=32 Score=33.65 Aligned_cols=34 Identities=26% Similarity=0.567 Sum_probs=28.6
Q ss_pred cCChhhH--HHhhHHHHHHHHHHHHHHHHHhhhccc
Q psy7859 144 DCDADYI--KDCWDPVYRHHFLIQSLAKALDCKKGF 177 (455)
Q Consensus 144 eVd~e~I--retW~~vYRrHFL~~al~~A~~CRs~f 177 (455)
++|-.++ ++.|...|-+||+.+|-.+|.+-.-+|
T Consensus 216 dldQ~F~Gt~eeWa~~YlKHFV~qA~kRa~dMi~kF 251 (317)
T 3ebc_A 216 DLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKF 251 (317)
T ss_dssp GCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 789999999999999999999998876
No 12
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=26.88 E-value=42 Score=29.95 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCC----CCCCCCChhhHHHHHhhhhhCCccCChhhHHHhhHHHHHHHHHHHHHHHH-Hhhhcccc
Q psy7859 104 KRSYVKSELDKVLQSDT----HHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCWDPVYRHHFLIQSLAKA-LDCKKGFY 178 (455)
Q Consensus 104 ~r~~i~~ELeklL~~~~----~H~~~L~~DElttVRkNLq~~gveVd~e~IretW~~vYRrHFL~~al~~A-~~CRs~ff 178 (455)
...++-+||..+|...+ -|-..|+..+++.+|+.|...|+++ .||+.--+++|+..+ .+|-.++|
T Consensus 7 ~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~----------~V~KNtL~~~Al~~~~~~~L~~~l 76 (165)
T 3sgf_H 7 DKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYM----------RVVRNTLLRRAVEGTPFECLKDAF 76 (165)
T ss_dssp HHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSE----------ECCCCTTTTTTTTTCTTTCTTCST
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEE----------EEECcHHHHHHHhcCCcchhHHhC
Confidence 45567799999999998 5667999999999999999888753 344444455555443 34555665
Q ss_pred c
Q psy7859 179 M 179 (455)
Q Consensus 179 k 179 (455)
.
T Consensus 77 ~ 77 (165)
T 3sgf_H 77 V 77 (165)
T ss_dssp T
T ss_pred c
Confidence 3
No 13
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=26.06 E-value=62 Score=28.90 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHhcCC------CCCCCCChhhHHHHHhhhhhCCccCChhhHHHhhHHHHHHHHHHHHHHHH-Hhhhcc
Q psy7859 104 KRSYVKSELDKVLQSDT------HHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCWDPVYRHHFLIQSLAKA-LDCKKG 176 (455)
Q Consensus 104 ~r~~i~~ELeklL~~~~------~H~~~L~~DElttVRkNLq~~gveVd~e~IretW~~vYRrHFL~~al~~A-~~CRs~ 176 (455)
...++-+||..+|...+ ++. .|+..+++.+|+.|...|+. ..||+.--++.|+... .+| .+
T Consensus 5 ~K~~~v~el~~~l~~~~~~v~v~~~~-gltv~~~~~LR~~lr~~g~~----------~~V~KNtL~~~Al~~~~~~~-~~ 72 (173)
T 2j01_J 5 RNVELLATLKENLERAQGSFFLVNYQ-GLPAKETHALRQALKQNGAR----------LFVAKNTLIRLALKELGLPE-LD 72 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcC-CCCHHHHHHHHHHHHHCCcE----------EEEehhHHHHHHHhcCCCCc-cc
Confidence 45567789999998888 554 89999999999999988876 3788888888888864 345 66
Q ss_pred ccc
Q psy7859 177 FYM 179 (455)
Q Consensus 177 ffk 179 (455)
++.
T Consensus 73 ~l~ 75 (173)
T 2j01_J 73 GLQ 75 (173)
T ss_pred ccc
Confidence 654
No 14
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.93 E-value=87 Score=26.64 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHHhccc---cHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy7859 403 KEIKEVLEDYSQ---DQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKA 450 (455)
Q Consensus 403 ~eik~vLd~~s~---d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~ 450 (455)
++|+++|+...+ +...-..++..+.-.|.+++..+..+...|+.++..
T Consensus 61 ~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 61 EESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777765422 245567788888889999999988888888877654
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.71 E-value=98 Score=24.41 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7859 377 RIQQMLKVTSNALRQQIMNREARRLDKEIKEVLE 410 (455)
Q Consensus 377 Riq~ml~~T~n~LRqqi~n~e~rrLe~eik~vLd 410 (455)
|||+.|++-+| ++.|.|++.++|...-.
T Consensus 28 kiQQLmkVN~~------ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 28 KVQQLMKVNSS------LSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHh------hhHHHHHHHHHHHHHHh
Confidence 78888888765 57899999998876543
No 16
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=22.78 E-value=89 Score=29.98 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=63.2
Q ss_pred hcccccccchHHHHHHHhhhHHHHhhhccCCChhhHHHHHHHHHhhhhccchhhhh-cccccccCCCCCcchhHHHhHhh
Q psy7859 230 SFPRIRELDRDELFEKARGEILDEIVNLSQVSVQHWEEVLLTQLWNKVSNYVFETI-YLPAAQSGNTNAFNTQMDIKLRQ 308 (455)
Q Consensus 230 ~fp~~reldRdELFekak~eild~v~~l~~~~~~~wE~~L~~klW~~i~~~v~~~I-ylpAaq~~s~~~Fnt~vDikL~~ 308 (455)
.|..-.+++.+|+|++-+.. .++..=|+.||.++.+...+ +=+ .=.+.| |++- .|+=+|+||+..-
T Consensus 39 ~y~D~~di~~~efy~~~~~~--~~~p~TSqps~~~~~~~f~~-l~~----~g~d~ii~i~i-Ss~LSGTy~sA~~----- 105 (285)
T 3lup_A 39 TYIEGQNLTLDQYYDKLAAS--KELPKTSQPSLAELDDLLCQ-LEK----EGYTHVLGLFI-AAGISGFWQNIQF----- 105 (285)
T ss_dssp CCCBTTTBCHHHHHHHHHHC--SSCCEECCCCHHHHHHHHHH-HHH----TTCCEEEECCS-CGGGCTHHHHHTT-----
T ss_pred EEecCCCCCHHHHHHHHHhC--CCCceeCCCCHHHHHHHHHH-HHH----cCCCeEEEEeC-CCchhHHHHHHHH-----
Confidence 45555789999999998753 24678899999999877643 322 112323 3333 3345688998763
Q ss_pred hhhhhccc--------hhHHHHHHHHHHHHHHHHHhhhcCCCCchhhHHH
Q psy7859 309 WADQQLPL--------QSIEAGWEVLKAEFVNFFEKEKNSKDHDGIFDNL 350 (455)
Q Consensus 309 wa~~~Lp~--------~sve~gwetL~~eF~~~l~~~k~~~d~d~ifd~L 350 (455)
|.++.|+ +++-.|--.+..+..++.+. +.+-+.|.+.|
T Consensus 106 -a~~~~~~~~I~ViDS~~~s~g~g~~v~~A~~l~~~---G~s~eeI~~~l 151 (285)
T 3lup_A 106 -LIEEHPNLTIAFPDTKITSAPQGNLVRNALMCSRE---GMDFDVIVNKI 151 (285)
T ss_dssp -HHHHCTTSEEECCCCCCCHHHHHHHHHHHHHHHTT---TCCHHHHHHHH
T ss_pred -HHHhCCCCCEEEEcCCchHHHHHHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3345654 45566666666666666554 33444444433
No 17
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=20.99 E-value=1.3e+02 Score=24.10 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHhhhhhCCccCChhhH
Q psy7859 105 RSYVKSELDKVLQSDTHHKPVLSPDELTTIRKNLQRSNIDCDADYI 150 (455)
Q Consensus 105 r~~i~~ELeklL~~~~~H~~~L~~DElttVRkNLq~~gveVd~e~I 150 (455)
..+|+..|..|........ .|+++.|+.+ |+.+||.|.--.+
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~k-PlSD~~I~~~---L~~~Gi~IaRRTV 59 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRK-PYSDQEIANI---LKEKGFKVARRTV 59 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSS-CCCHHHHHHH---HTTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-CCCHHHHHHH---HHHcCCCccHHHH
Confidence 3578899999988775444 3899888765 7788999875544
No 18
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=20.50 E-value=1.2e+02 Score=21.02 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=30.2
Q ss_pred HHHHHHHhc-CCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhh
Q psy7859 110 SELDKVLQS-DTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCW 154 (455)
Q Consensus 110 ~ELeklL~~-~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW 154 (455)
.+|..++.. ++++..+|+.+|+..+=+. -|..++++.++..+
T Consensus 6 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~---~~~~~~~~~~~~~~ 48 (71)
T 2b1u_A 6 EDLQVAFRAFDQDGDGHITVDELRRAMAG---LGQPLPQEELDAMI 48 (71)
T ss_dssp HHHHHHHTTSCCSSSSEEEHHHHHHHGGG---TTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHH---hCCCCCHHHHHHHH
Confidence 456666654 4578889999998876544 47888888776655
No 19
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=20.46 E-value=83 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=35.0
Q ss_pred HHHHHHHHhccc----cHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy7859 403 KEIKEVLEDYSQ----DQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKA 450 (455)
Q Consensus 403 ~eik~vLd~~s~----d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~ 450 (455)
++|+++|+.+.. +...-..++..++-+|.+++..+..+.+.|+..+.+
T Consensus 71 ~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~~~ 122 (154)
T 2zhg_A 71 ATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGC 122 (154)
T ss_dssp HHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888876542 244566788888889999999998888888877653
Done!