Query psy7859
Match_columns 455
No_of_seqs 78 out of 80
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 20:39:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7859.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7859hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8ea1 a.6.1.3 (A:3-120) Tran 38.5 19 0.0014 27.7 4.9 47 404-453 66-112 (118)
2 d1zava1 d.58.62.1 (A:1-177) Ri 36.6 15 0.0011 30.9 4.1 67 104-180 6-80 (177)
3 d1mbaa_ a.1.1.2 (A:) Myoglobin 31.5 1E+02 0.0075 23.5 12.2 31 147-177 7-43 (146)
4 d1q08a_ a.6.1.3 (A:) Transcrip 31.4 23 0.0017 26.9 4.1 48 403-450 20-71 (94)
5 d2pvba_ a.39.1.4 (A:) Parvalbu 25.5 38 0.0027 25.7 4.5 44 111-154 41-85 (107)
6 d2fcea1 a.39.1.5 (A:84-144) Ca 22.2 38 0.0028 22.9 3.5 41 111-154 2-43 (61)
7 d1fw4a_ a.39.1.5 (A:) Calmodul 21.9 37 0.0027 23.2 3.5 42 111-155 4-46 (65)
8 d1tx3a1 c.52.1.19 (A:2-258) Re 21.0 30 0.0022 31.1 3.3 30 148-177 219-248 (257)
9 d1fi5a_ a.39.1.5 (A:) Troponin 20.6 50 0.0037 23.5 4.1 41 111-154 16-57 (81)
10 d1s6ja_ a.39.1.5 (A:) Calcium- 20.1 41 0.003 24.5 3.5 36 118-156 32-67 (87)
No 1
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=38.53 E-value=19 Score=27.70 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHhccccHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy7859 404 EIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNT 453 (455)
Q Consensus 404 eik~vLd~~s~d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~L~~ 453 (455)
+||++++ .+.+....++....-.+-+++..+..+++.|+.+...+++
T Consensus 66 eIk~~l~---~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~l~~ 112 (118)
T d1r8ea1 66 EMKKAQD---LEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 112 (118)
T ss_dssp HHHHHTT---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677664 3455567778888888888899999999999988887764
No 2
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=36.60 E-value=15 Score=30.88 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcCC----CCCCCCChhhHHHHHhhhhh---CCccCChhhHHHhhHHHHHHHHHHHHHHHHH-hhhc
Q psy7859 104 KRSYVKSELDKVLQSDT----HHKPVLSPDELTTIRKNLQR---SNIDCDADYIKDCWDPVYRHHFLIQSLAKAL-DCKK 175 (455)
Q Consensus 104 ~r~~i~~ELeklL~~~~----~H~~~L~~DElttVRkNLq~---~gveVd~e~IretW~~vYRrHFL~~al~~A~-~CRs 175 (455)
+...+-++|..+|...+ -|-.+||..|++.+|+.|+. .|+++ .||+.-.+++|+..+. .+-.
T Consensus 6 ~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~----------kV~KNtL~k~Al~~t~~~~l~ 75 (177)
T d1zava1 6 QKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARF----------RVVKNTLLNLALKNAEYEGYE 75 (177)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEE----------EEECHHHHHHHHHHTTCCSCG
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEE----------EEechHHHHHHHhcCCcchhh
Confidence 34456789999999998 56679999999999999964 47763 6888888889988765 3333
Q ss_pred ccccC
Q psy7859 176 GFYMD 180 (455)
Q Consensus 176 ~ffk~ 180 (455)
.+|..
T Consensus 76 ~~l~g 80 (177)
T d1zava1 76 EFLKG 80 (177)
T ss_dssp GGCSS
T ss_pred HHHhh
Confidence 44433
No 3
>d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}
Probab=31.50 E-value=1e+02 Score=23.49 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=24.7
Q ss_pred hhhHHHhhHHHHH------HHHHHHHHHHHHhhhccc
Q psy7859 147 ADYIKDCWDPVYR------HHFLIQSLAKALDCKKGF 177 (455)
Q Consensus 147 ~e~IretW~~vYR------rHFL~~al~~A~~CRs~f 177 (455)
-++|+++|..|+. ..|+.+.....-+++.-|
T Consensus 7 ~~~v~~sW~~v~~~~~~~g~~if~~lF~~~P~~~~~F 43 (146)
T d1mbaa_ 7 ADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFF 43 (146)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHCHHHHHHh
Confidence 3678889998876 467888888888898866
No 4
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=31.36 E-value=23 Score=26.88 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred HHHHHHHHhccc----cHHHHhhhhccchhhhHHHHHHHHHHHHHHHHHHHH
Q psy7859 403 KEIKEVLEDYSQ----DQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKA 450 (455)
Q Consensus 403 ~eik~vLd~~s~----d~~~k~~lltGrrV~LAEeLk~vr~iqekLeef~~~ 450 (455)
.|||++|+-+.+ +-..-+.+++.+..+|-+.+..+..++..|..+..+
T Consensus 20 ~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l~~~ 71 (94)
T d1q08a_ 20 ESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (94)
T ss_dssp HHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999986532 224457888999999999999999999999887765
No 5
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=25.46 E-value=38 Score=25.74 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=35.5
Q ss_pred HHHHHHhc-CCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhh
Q psy7859 111 ELDKVLQS-DTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCW 154 (455)
Q Consensus 111 ELeklL~~-~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW 154 (455)
||..+++. ++++.-+|+.+|++.+=++|-..|..++++.+++.+
T Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~~~~~~l~ 85 (107)
T d2pvba_ 41 DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFL 85 (107)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHHhhcccccCCHHHHHHHH
Confidence 45566555 678999999999999988887777788988888765
No 6
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.18 E-value=38 Score=22.92 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHHhc-CCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhh
Q psy7859 111 ELDKVLQS-DTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCW 154 (455)
Q Consensus 111 ELeklL~~-~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW 154 (455)
||.+.+.. ++++.-+|+.+|+..+ |.+.|+.++++.|....
T Consensus 2 el~~aF~~fD~~~~G~I~~~el~~~---l~~~g~~~~~~ei~~l~ 43 (61)
T d2fcea1 2 DFVKAFQVFDKESTGKVSVGDLRYM---LTGLGEKLTDAEVDELL 43 (61)
T ss_dssp HHHHHHHHHCTTCCSCEEHHHHHHH---HHHTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHCCCCCCeEeHHHHHHH---HHHcCCCCCHHHHHHHH
Confidence 45555444 5799999999999666 67789999999888765
No 7
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.92 E-value=37 Score=23.20 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHhc-CCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhhH
Q psy7859 111 ELDKVLQS-DTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCWD 155 (455)
Q Consensus 111 ELeklL~~-~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW~ 155 (455)
||.+.+.. ++++.-+|+.+|+..+= .+-|..++++.|+..+.
T Consensus 4 el~~aF~~fD~d~~G~I~~~el~~~l---~~lg~~~~~~e~~~l~~ 46 (65)
T d1fw4a_ 4 EIREAFRVFDKDGNGYISAAELRHVM---TNLGEKLTDEEVDEMIR 46 (65)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHH---HHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHH---HHhCCCCCHHHHHHHHH
Confidence 45454433 57999999999997764 45599999999887663
No 8
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII {Haemophilus influenzae [TaxId: 727]}
Probab=21.04 E-value=30 Score=31.10 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=25.1
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHhhhccc
Q psy7859 148 DYIKDCWDPVYRHHFLIQSLAKALDCKKGF 177 (455)
Q Consensus 148 e~IretW~~vYRrHFL~~al~~A~~CRs~f 177 (455)
---++.|.+-|-+||+-++.++|.+---+|
T Consensus 219 ~g~kkqw~~~ylkhfv~q~e~ra~~mi~~f 248 (257)
T d1tx3a1 219 NGTREEWAKSYLKHFVTQAEQRAISMIDKF 248 (257)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999998765544
No 9
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}
Probab=20.61 E-value=50 Score=23.54 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHHHHHhc-CCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhh
Q psy7859 111 ELDKVLQS-DTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCW 154 (455)
Q Consensus 111 ELeklL~~-~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW 154 (455)
+|..++.. +.++.-+|+.+|+.++ |..-|..++++.|.+.+
T Consensus 16 ~l~~~F~~~D~d~~G~I~~~el~~~---l~~~g~~~~~~ev~~~~ 57 (81)
T d1fi5a_ 16 ELSDLFRMFDKNADGYIDLEELKIM---LQATGETITEDDIEELM 57 (81)
T ss_dssp HHHHHHHHHCSSCSSEECHHHHHHH---HHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHH---HHhcCCCCCHHHHHHHH
Confidence 34444433 5688999999998766 66679999998887765
No 10
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}
Probab=20.06 E-value=41 Score=24.53 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=29.4
Q ss_pred cCCCCCCCCChhhHHHHHhhhhhCCccCChhhHHHhhHH
Q psy7859 118 SDTHHKPVLSPDELTTIRKNLQRSNIDCDADYIKDCWDP 156 (455)
Q Consensus 118 ~~~~H~~~L~~DElttVRkNLq~~gveVd~e~IretW~~ 156 (455)
-++++..+|+.+|+.++ |++-|+.++++.|++.+..
T Consensus 32 ~D~d~~G~I~~~el~~~---l~~lg~~~s~~e~~~l~~~ 67 (87)
T d1s6ja_ 32 IDTDNSGTITFDELKDG---LKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HCTTCSSCEEHHHHHHH---HHTTTSSCCHHHHHHHHHH
T ss_pred HcCCCCCcCcHHHHHHH---HHHcCCCCCHHHHHHHHHH
Confidence 35788999999998777 5666999999999887743
Done!