RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7859
(455 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 3e-10
Identities = 69/436 (15%), Positives = 123/436 (28%), Gaps = 134/436 (30%)
Query: 71 LRILQLN--TLEDQC-VSPSLSERWMYWKYSTEEQVKRSYVKSELDKVLQSDTHHKPVLS 127
R L L+ +LE V + + Q++ + K + +P +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEPT-T 56
Query: 128 PDELTTIRKNLQRSNIDCDADYIKDCWDPVYRHHFLIQSLAKALDCKKGF---YMDGVTL 184
P EL K L Y+ +P F Q L L F Y++G
Sbjct: 57 PAELVG--KFLG---------YVSSLVEPSKVGQFD-QVLNLCLTE---FENCYLEG--- 98
Query: 185 SSQVTTRNL-SFAVSECFWKMVRETVEQQADAFKATRFNLETEWKNSFPRIRELDRDELF 243
++ + A + T+ + + K K F + LF
Sbjct: 99 ------NDIHALAAK--LLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSN---SALF 146
Query: 244 EKAR-------------GEI---LDEIVNLSQVSVQHWEEVLLTQLWNKVSNYVFETIYL 287
G +E+ +L Q VL+ L + + E L
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-----HVLVGDLIKFSAETLSE---L 198
Query: 288 PAAQSGNTNAFNTQMDIKLRQWAD--QQLP----LQSIEAGWEVLK-AEFVNFFEKEKNS 340
F ++I +W + P L SI ++ + ++ K
Sbjct: 199 IRTTLDAEKVFTQGLNIL--EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 341 -KDHDGIFDNLK-----------AAVIEEALRRHSWEHKDCCDV----VLFW---RIQQM 381
+ LK A I E SWE VLF+ R +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAET---DSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 382 LKVTSNALRQQIMNREARRLDKEIKEVLEDYSQDQEKK---MILLTGRRVTLAEELKRVK 438
TS +LED ++ E M+ ++ L +
Sbjct: 314 YPNTSLPP-----------------SILEDSLENNEGVPSPMLSISN--------LTQ-- 346
Query: 439 QIQEKLEEFIKALNTE 454
E++++++ N+
Sbjct: 347 ---EQVQDYVNKTNSH 359
Score = 47.4 bits (112), Expect = 8e-06
Identities = 50/334 (14%), Positives = 93/334 (27%), Gaps = 111/334 (33%)
Query: 1 MDIKLRQWAD--QQLP----LQSIEAGWEVLK-AEFVNFFEKEKNS-KDHDGIFDNLK-- 50
++I +W + P L SI ++ + ++ K + LK
Sbjct: 213 LNIL--EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 51 ---------AAVIEEALRRHSWEH---KGSEMLRILQLNTLEDQCVSPSLSERWMYWKYS 98
A I E SWE + + +L + P+ S + S
Sbjct: 271 TGHSQGLVTAVAIAET---DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 99 TEEQVK--------RSYVKSELDKVLQSDTHHKP----------------VLS--PDELT 132
E + + ++ + H P V+S P L
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 133 TIRKNLQR--SNIDCDADYI-----KDCWDPVYRHHFL-IQS------LAKALDCKKGFY 178
+ L++ + D I K + + FL + S L A D
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERK----LKFSNRFLPVASPFHSHLLVPASD------ 437
Query: 179 MDGVTLSSQVTTRNLSFAVSECFWKMVRETVEQQADAFKATRFNLETEWKNSFPRIRELD 238
++ + N+SF + + V ++ + +R L
Sbjct: 438 ----LINKDLVKNNVSFNAKDI-----QIPV-----------YDTFD-GSD----LRVLS 472
Query: 239 RDELFEKARGEILDEIVNLSQVSVQHWEEVLLTQ 272
+ E I+D I+ L V WE +
Sbjct: 473 -GSISE----RIVDCIIRL-PV---KWETTTQFK 497
Score = 44.3 bits (104), Expect = 9e-05
Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 135/318 (42%)
Query: 194 SFAVSECFWKMVRETVEQQADAFKATR--FNLETEWKNS-------FP-----RIRELDR 239
+ ++ W +AD F++ N+ F RIRE
Sbjct: 1638 TSKAAQDVWN--------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 240 DELFEKARG------EILDEI-VNLSQVSVQHWEEVL-LTQLWNKVSNYVFETIYLPAAQ 291
+FE +I EI + + + + + +L TQ
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ------------------- 1730
Query: 292 SGNTNAFNTQMDIKLRQWADQQLP---LQSIEAGWEVLKAEFVNFFEKEKNSKDHDGIFD 348
TQ P L A +E LK++ + D F
Sbjct: 1731 -------FTQ-------------PALTLMEK-AAFEDLKSKGL---------IPADATF- 1759
Query: 349 NLKA-----------AV-----IEEALRRHSWEHKDCCDVVLFWR---IQQMLKVTSNAL 389
A ++ IE + V+F+R +Q +
Sbjct: 1760 ---AGHSLGEYAALASLADVMSIESLVE------------VVFYRGMTMQVAVPRDELGR 1804
Query: 390 RQQIM-----NREARRLDKE-IKEVLEDYSQDQEKKMIL------LTGRRVTLAEELKRV 437
M R A +E ++ V+E + ++ + ++ A +L+ +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW--LVEIVNYNVENQQYVAAGDLRAL 1862
Query: 438 KQIQEKLEEFIKALNTEK 455
+ + + + +K
Sbjct: 1863 ----DTVTNVLNFIKLQK 1876
Score = 42.7 bits (100), Expect = 2e-04
Identities = 85/518 (16%), Positives = 148/518 (28%), Gaps = 199/518 (38%)
Query: 8 WADQQLPLQSIEAGWEVLKAEFVNFFEKEKNSKDHDGIFDNLKAAVIEEALRR------- 60
AD + P E L +F+ + G FD + + E
Sbjct: 49 AADDE-PTTPAE-----LVGKFLGYVSSLV-EPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 61 HSWEHKGSEMLRILQLNTLEDQCVSPSLSERWM--YWKYSTEEQVKRSYVK---SELDKV 115
H+ L L++ + ++ + Y + KR + K S L +
Sbjct: 102 HA-----------LAAKLLQENDTTLVKTKELIKNY--ITARIMAKRPFDKKSNSALFRA 148
Query: 116 ------------------------LQS--DTHHKPVLSP--DELTTIRKNLQRSNIDCDA 147
L+ T + ++ L R+ +D +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 148 DYIKDC----W--DPVYRH--------------HFLIQSLAKALDCKK-GF-------YM 179
+ + W +P +IQ + K GF Y+
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 180 DGVTLSSQ--VTTRNLSFAVS-ECFWKMVRETVE---------QQADAFKATRFN---LE 224
G T SQ VT ++ S E F+ VR+ + + A+ T LE
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--AYPNTSLPPSILE 325
Query: 225 TEWKNS--FP----RIRELDRDELFEKARGEILDEIVNL-----SQVSVQHWEEVLLTQL 273
+N+ P I L ++++ + +++ N QV + L
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQ-----DYVNK-TNSHLPAGKQVEI---------SL 370
Query: 274 WNKVSNYVFETIYLPAAQSGNTNA---FNTQM-DIKLRQWADQ-QLPLQSIEAGWEVLKA 328
N N V SG + N + K DQ ++P S K
Sbjct: 371 VNGAKNLVV---------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SER------KL 414
Query: 329 EFVN-F------FEKEKNSKDHDGIFDNLKAAV--IEEALRRH--SWEHKDCCDVVLFWR 377
+F N F F H + L A I + L ++ S+ KD
Sbjct: 415 KFSNRFLPVASPF--------HSHL---LVPASDLINKDLVKNNVSFNAKD--------- 454
Query: 378 IQQMLKV----TSNALRQQIMNREARRLDKEIKEVLED 411
+++ T + + R L I E + D
Sbjct: 455 ----IQIPVYDTFDG-------SDLRVLSGSISERIVD 481
Score = 42.3 bits (99), Expect = 3e-04
Identities = 49/312 (15%), Positives = 96/312 (30%), Gaps = 109/312 (34%)
Query: 107 YVKSELDKVL--QSDTHHKPVL----------SPDELT---------TIRKNLQRSNIDC 145
Y S+ + + ++D H K +P LT IR+N
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-------- 1687
Query: 146 DADYIKDCWDPVYRHHFLIQSLAKALDCKKGFYM---DGVTLSSQVTTRN----LSFAVS 198
Y ++ + + + K ++ Y + LS+ T+ L +
Sbjct: 1688 ---YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA---TQFTQPAL-TLME 1740
Query: 199 ECFWKMVRE-TVEQQADAF-------------KATRFNLETEWKNSFPR----IRELDRD 240
+ ++ ++ + F A ++E+ + F R + RD
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 241 ELFEKARGEILDEIVNLSQVSVQHWEEVLLTQLWNKVSNYVFETIYLPAAQSG------N 294
EL G I +N +V+ +E L YV E + ++G N
Sbjct: 1801 ELGRSNYGMIA---INPGRVAASFSQEAL---------QYVVERV---GKRTGWLVEIVN 1845
Query: 295 TNAFNTQMDIKLRQWADQQL----PLQSIEAGWEVLKAEFVNFFEKEKNSKDHDGIFDNL 350
+N +QQ L++++ VL F K + L
Sbjct: 1846 ---YNV---------ENQQYVAAGDLRALDTVTNVLN------FIKLQKID-----IIEL 1882
Query: 351 KAAVIEEALRRH 362
+ ++ E + H
Sbjct: 1883 QKSLSLEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 55/389 (14%), Positives = 118/389 (30%), Gaps = 68/389 (17%)
Query: 54 IEEALRRHSWEHKGSEMLRILQ-----------------LNTLEDQCVSPSLSERWMYWK 96
I+ LRR L +L L T + V+ LS
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTT 287
Query: 97 YSTEEQVKRSYVKSELDKVLQSDTHHKPVLSPDELTTIRKN-LQRSNIDCDADYIKDC-- 153
+ + + + E+ +L +P P E+ T N + S I A+ I+D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSII---AESIRDGLA 342
Query: 154 -WDPVYRHHF------LIQSLAKALDCK--KGFYMDGVTLSSQVTTRNLSFAVSECFW-K 203
WD ++H +I+S L+ + + ++ + W
Sbjct: 343 TWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFD 398
Query: 204 MVRETVEQQADAFKATRFNLETEWKNSFPRIRELDRDELFEKARGEILDEIVNLSQVSVQ 263
+++ V + +E + K S I + + + L+ L + V
Sbjct: 399 VIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVK------LENEYALHRSIVD 451
Query: 264 HWEEVLLTQLWN----KVSNYVFETI-Y-LPAAQSGNTNAFNTQMDIKLRQWADQQLPLQ 317
H+ + + Y + I + L + + + R + +Q++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHD 510
Query: 318 SIEAGWEVLKAEFVNFFEK-EKNSKDHDGIFDNLKAAVIEEALRRHSWE--HKDCCDVVL 374
S + + + D+D ++ L A I + L + D++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLL- 568
Query: 375 FWRIQQMLKVTSNALRQQIMNREARRLDK 403
+ L A I +++ +
Sbjct: 569 ----RIALMAEDEA----IFEEAHKQVQR 589
Score = 49.9 bits (118), Expect = 1e-06
Identities = 43/349 (12%), Positives = 102/349 (29%), Gaps = 87/349 (24%)
Query: 142 NIDCDADYIKDCWDPVYRHHFLIQSLAKALDCKKGFYMDGVTLSSQ-----VTTRNLSFA 196
++D + + + + F + DCK M LS + + +++
Sbjct: 6 HMDFETGEHQYQYKDIL-SVFE-DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 197 VSECFWKMVRETVEQQADAFKATRFNLETEWKNSFPRIRELDRD-----ELFEKARGEIL 251
FW + E+ F + ++ S I+ R ++ + R +
Sbjct: 64 TLRLFW-TLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 252 DEIVNLSQVSVQHWEEVL-----LTQLWNKVSNYVFETIY---------LPAAQSGNTNA 297
++ ++ +V + L L +L + + V I + A +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNV--LIDGVLGSGKTWV-ALDVCLSYK 175
Query: 298 FNTQMD-----IKLRQWADQQLPLQSIEAGWEVLKAEFVNFFEKEKNSKDHDGIFDNLKA 352
+MD + L+ + L+ ++ + + + + N K +++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQ- 231
Query: 353 AVIEEALRR--HSWEHKDCC----DVVLFWRIQQMLKVTSNALRQQIMNREARRLDKEIK 406
LRR S +++C +V + +
Sbjct: 232 ----AELRRLLKSKPYENCLLVLLNV---Q-------------------------NAKAW 259
Query: 407 EVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTEK 455
+ ILLT R + + L L+ L ++
Sbjct: 260 NAFNLSCK------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Score = 49.1 bits (116), Expect = 3e-06
Identities = 60/470 (12%), Positives = 135/470 (28%), Gaps = 155/470 (32%)
Query: 64 EHKGSEMLRILQLNTLED-QCVSPSLSERWMYWKYSTEEQVKRSYVKSELDKVLQSDTH- 121
+++ ++L + + +++ C ++ K K E+D ++ S
Sbjct: 15 QYQYKDILSVFEDAFVDNFDC-------------KDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 122 -----------HKP----------VLSPD---------------ELTTIRKNLQRSNIDC 145
K VL + + T QR +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 146 DADYIKDCWDPVYRHHFLIQSLAKAL-DCKKGFY-----MDGV--------TLSSQVTTR 191
D V R L +AL + + + G S
Sbjct: 122 DNQVFAK--YNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 192 NLSFAVSECFW-------------KM-------VRETVEQQADAFKATRFNLETEWKNSF 231
+ F + FW +M + ++D + + +
Sbjct: 179 KMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQA-- 232
Query: 232 PRIRELDRDELFEKARGEILDEIVNLSQVSVQHWE------EVLLTQLWNKVSNYVFETI 285
+R L + + +E +L + N + W ++LLT + +V++++
Sbjct: 233 -ELRRLLKSKPYENCL-LVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 286 YLPAAQSGNTNAFNTQ--MDIKLRQWAD---QQLPLQSIEAGWEVLK--AEFVNFFEKEK 338
+ ++ + L ++ D Q LP + + L AE +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESI------- 337
Query: 339 NSKDHDGIFDNLKAAVIEEALRRHSWEHKDCCDVVLFWRIQQMLKVTSNALRQQIMNREA 398
+D +DN W+H +C ++ +++ + N L +
Sbjct: 338 --RDGLATWDN--------------WKHVNC------DKLTTIIESSLNVLEPAEYRKMF 375
Query: 399 RRL-----DKEIKE-VLE---DYSQDQEKKMILLTGRRVTLAEELKRVKQ 439
RL I +L + +++ + +L E K+ K+
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPKE 423
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 37.0 bits (86), Expect = 0.003
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 391 QQIMNREARRLD---KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEF 447
QQI + + L EI+ ++ + E + + +R L E +R+ ++ ++E
Sbjct: 52 QQI--QSFKHLGFSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEM 109
Query: 448 IKALNTEK 455
K E+
Sbjct: 110 TKKFQKEE 117
>1r8d_A Transcription activator MTAN; protein-DNA complex,
transcription/DNA complex; 2.70A {Bacillus subtilis}
SCOP: a.6.1.3 PDB: 1jbg_A
Length = 109
Score = 34.1 bits (79), Expect = 0.017
Identities = 12/65 (18%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 391 QQIMNREARRLD---KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEF 447
QQI + + EIKE+L+ + D++ L ++ L ++ +R+ ++ + ++
Sbjct: 50 QQI--LFFKEIGFRLDEIKEMLDHPNFDRKA---ALQSQKEILMKKKQRMDEMIQTIDRT 104
Query: 448 IKALN 452
+ +++
Sbjct: 105 LLSVD 109
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription,
resistance, antibiotic; 2.90A {Streptomyces lividans}
Length = 108
Score = 33.7 bits (78), Expect = 0.026
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 391 QQIMNREARRLD---KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEF 447
QQI R L E+ +L+D + D L + L+ + +++++ +E+
Sbjct: 49 QQI--LFYRELGFPLDEVAALLDDPAADPRA---HLRRQHELLSARIGKLQKMAAAVEQA 103
Query: 448 IKA 450
++A
Sbjct: 104 MEA 106
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 35.2 bits (81), Expect = 0.037
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 183 TLSSQVTTRNLSFAVSECFWKMVRETVEQQADAFKATRFNLETEWKN 229
L++++ + +L+ +S+ ++++ + T LETE
Sbjct: 273 HLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSR 319
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 33.9 bits (77), Expect = 0.10
Identities = 39/320 (12%), Positives = 95/320 (29%), Gaps = 60/320 (18%)
Query: 185 SSQVTTRNLSFAVSECFWKMVRETVEQQADAFKATRFNLETEWKNSFPRIRELDRDELFE 244
+ T L+ ++ + +++ + K T + E + I E + +++F
Sbjct: 290 EGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFF 349
Query: 245 KARGEILDEIVNLSQVSVQHWEEVLLTQL--WNKVSNYVFETIYLPAAQSGN--TNAFNT 300
+ ++ +Q E V + + ++ + F + +
Sbjct: 350 LI--DKVNAFNQDITALMQGEETVGEEDIRLFTRL-RHEFHKWSTIIENNFQEGHKILSR 406
Query: 301 QMDIKLRQWADQQLPLQSIEAGWEVLKAEFVNFFEK-----------------EKNSKDH 343
++ Q A +LP +E + + + E+ S +
Sbjct: 407 KIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKN 466
Query: 344 DGIFDNLKAA---VIEEALRR---------------HSWEHKDCCDVVLFWRIQQMLKVT 385
F NL IE+ + + +
Sbjct: 467 FEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSATDSSMEEIFQH 526
Query: 386 SNALRQQIMNREA------------RRLDKEIKEVLEDYSQDQEKKMILL------TGRR 427
A Q+ R + + +++++ + QD++ LL + +R
Sbjct: 527 LMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKR 586
Query: 428 VTLAEELKRVKQIQEKLEEF 447
L E L R+ Q + +L +F
Sbjct: 587 KFLKERLARLTQARRRLAQF 606
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 33.6 bits (77), Expect = 0.12
Identities = 6/53 (11%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 403 KEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTEK 455
+E+K+ + ++ T + + E+L + +++ + K + +
Sbjct: 67 EEMKKAQDLEMEELFA---FYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 33.0 bits (75), Expect = 0.18
Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 166 SLAKALDCKKGFYMDGV---TLSSQVTTRNLSFAVSECFWKMVRETVEQQADAFKATRFN 222
+ AL ++ F++ L+ ++ T L +++ +R+T+ + ++ +
Sbjct: 247 DITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLS 306
Query: 223 LETE---WKNSFPRIRELDR-----DELFEKARGEILDEIVNLSQVSV 262
+E E +KN P D ++ + E L I N++ +V
Sbjct: 307 IEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALK-EALSIIGNINTTTV 353
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.2 bits (76), Expect = 0.20
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 351 KAAVIEEALRRHSWEHKDCCDVVLFWRIQQMLKVTSNALRQQIMNREARRLDKEIKEV-- 408
++I + R + R + + R+ + RE ++L E + V
Sbjct: 865 HKSIIIQKHVRGWLARVH------YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918
Query: 409 LEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTE 454
+ E K++ L + +E K + + LE +
Sbjct: 919 YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Score = 30.1 bits (68), Expect = 1.9
Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 376 WRIQQMLKVTSNALRQ-QIMNREARRLDKEIKEVLEDYSQDQEKKMILLTGRRVTLAEEL 434
+I + K + L + + ++++ +E + E++ T R ++L EE+
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL-RMSEEEAKNATNRVLSLQEEI 993
Query: 435 KRVKQIQEKLEEFIKALNTEK 455
++++ + + K +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWA 1014
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.89
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 376 WRIQQMLKVTSNALRQQIMNREARRLDKEIKEV----LEDYSQDQEKKMILLTGRRVTLA 431
WR +Q R Q ++ ++ +++E +E LE+++Q Q +++
Sbjct: 90 WREEQ-------RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV----------- 131
Query: 432 EELKRVKQIQEKLEEFIKALNTE 454
E+ K +I + + F + + +
Sbjct: 132 EKNKINNRIAD--KAFYQQPDAD 152
Score = 27.4 bits (60), Expect = 8.1
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 226 EWKNSF-PRIRELD------RDELFEKARGEILD------EIVNLSQVSVQHWEEVLLTQ 272
+W+ R++ELD E EKA+ ++ + E V ++++ + ++ Q
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.1 bits (67), Expect = 1.8
Identities = 14/115 (12%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 359 LRRHSWEHKDCCDVVLF--WRIQQMLKVTSNA---------------LRQQIMNREARRL 401
+R + + ++ + +R ++ ++ ++ E ++
Sbjct: 279 IRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKK 338
Query: 402 DKEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEK-LEEFIKALNTEK 455
++E++++ +++E ++ + LK++ Q ++K LE+ K+L+ E
Sbjct: 339 EEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEV 393
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 29.5 bits (67), Expect = 1.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA+ + +E+ +VLE QD +++LTG
Sbjct: 31 NAMSPTLN--------REMIDVLETLEQDPAAGVLVLTG 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 301 QMDIKLRQWADQQLPLQSIEAGWE 324
++ L+ +AD P +I+A E
Sbjct: 24 KLQASLKLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 3.6
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 3 IK-----LRQWADQQLPLQSIEAGWE 23
+K L+ +AD P +I+A E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 29.3 bits (65), Expect = 3.3
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%)
Query: 327 KAEFVNFFEKEKNSKDHDGIFDNLKAAVIEEALRRHSWEHKDCCDVVLFWRIQQML---K 383
K +N + E KD + +E L + W + F R + K
Sbjct: 3 KEALLNLYRIEYRPKDTTFTVFKPTHEIQKEKLNKVRWRVFLQTGLPTFRREDEFWCAGK 62
Query: 384 VTSNALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEK 443
V + L + N E L + +E + ++E + + + L + K +
Sbjct: 63 VEKDTLYLTLSNGEIVELKRVGEEEFRGFQNERECQELFR--------DFLTKTKVKDKF 114
Query: 444 LEEFIKALNTE 454
+ +F K +
Sbjct: 115 ISDFYKKFRDK 125
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 3.3
Identities = 15/107 (14%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 351 KAAVIEEALRRHS--WEHKDCCDVVLFWRIQQMLKVTSNALRQQIMNREARRLDKEIKEV 408
+ +++E L+ + + + V L + Q++ ++ + E + + K+
Sbjct: 893 EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 409 LEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEFIKALNTEK 455
++ D E+++ R L E +K+E+ I + +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 28.6 bits (65), Expect = 3.5
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NAL ++ +E+ + LE + +D I+LTG
Sbjct: 29 NALCNGLI--------EELNQALETFEEDPAVGAIVLTG 59
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 28.7 bits (65), Expect = 3.7
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA + + E+ + DQ +I+LTG
Sbjct: 35 NAFTPKTVA--------EMIDAFSRARDDQNVSVIVLTG 65
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 28.7 bits (65), Expect = 3.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA R Q + E+ + + +D ++LLTG
Sbjct: 32 NAFRPQTVF--------ELYDAFCNAREDNRIGVVLLTG 62
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural
genomics, protein structure initiative; 1.50A
{Pseudomonas fluorescens pf-5}
Length = 153
Score = 27.9 bits (63), Expect = 3.8
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 376 WRIQQMLKVTSNALRQQIMNREARRLDKEIKE 407
W Q++L AL Q RE RL E
Sbjct: 118 WDDQELLLALRQALEHQHSERERLRLQDEGHH 149
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 28.6 bits (65), Expect = 3.9
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA+ Q+M ++ E+++ +D +++++ G
Sbjct: 27 NAMSSQVM--------HDVTELIDQVEKDDNIRVVVIHG 57
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 28.7 bits (65), Expect = 4.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA R + E+ + L D D +I+LTG
Sbjct: 50 NAFRPLTVK--------EMIQALADARYDDNIGVIILTG 80
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU;
nucleotide-binding, transcription regulation; 2.10A
{Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Length = 139
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 376 WRIQQMLKVTSNALRQQIMNREARRLDKEIKE 407
W +Q+L NA R + RE RL E++
Sbjct: 104 WHPEQLLSSARNAARMFTLARENERLSLEMRL 135
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 28.2 bits (64), Expect = 4.6
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NAL +Q++ EI +E + ++++ ++I+LTG
Sbjct: 27 NALSRQMV--------AEIVAAVEAFDRNEKVRVIVLTG 57
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 28.3 bits (64), Expect = 4.8
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NAL Q+M E+ + D + I++TG
Sbjct: 47 NALNSQVM--------NEVTSAATELDDDPDIGAIIITG 77
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 28.3 bits (64), Expect = 4.9
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NAL Q + E+ + D+ D E I++TG
Sbjct: 32 NALNQTLE--------AEVLDAARDFDADLEIGAIVVTG 62
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 28.3 bits (64), Expect = 4.9
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA+ +Q+ +EI ++ + + ++L G
Sbjct: 45 NAMTRQVY--------REIVAAADELGRRDDIGAVVLFG 75
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase,
conformational change, peptide binding, ATP-binding,
cell inner membrane; HET: ADP; 3.10A {Thermotoga
maritima} PDB: 3din_A*
Length = 822
Score = 28.8 bits (65), Expect = 5.0
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 392 QIMNREARRLDKEIKEVLEDYSQDQEKKMILLTGRRVTLAEEL 434
+ + A++ K+ +D++ D++ + I+LT V AE++
Sbjct: 280 RRFAQIAKKFVKD-----KDFTVDEKARTIILTEEGVAKAEKI 317
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 28.2 bits (63), Expect = 5.2
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA R ++ E+ VL+ + ++LLTG
Sbjct: 79 NAFRPHTVD--------ELYRVLDHARMSPDVGVVLLTG 109
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 28.4 bits (64), Expect = 6.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 392 QIMNREARRLDKEIKEVLEDYSQDQEKKMILLTGRRVTLAEEL 434
N R L E +DY+ D + K + LT +T AE+
Sbjct: 238 VQANAFVRTLKAE-----KDYTYDIKTKAVQLTEEGMTKAEKA 275
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 27.6 bits (62), Expect = 7.6
Identities = 3/39 (7%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
N + +++ +++ +LE+ + ++++
Sbjct: 29 NLIGPEVV--------RDLVALLEELAHPTAPRVVIFDS 59
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 27.5 bits (62), Expect = 7.8
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
N+ + KE ++D D + K++++
Sbjct: 30 NSYDLEFY--------KEFNAAIDDIRFDPDIKVVIVMS 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus,
protein transport, ER-golgi transport, ARF, GTPase,
effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Length = 77
Score = 26.1 bits (57), Expect = 7.9
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 394 MNREARRLDKE------IKEVLEDYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLEEF 447
M RE L E K L D K+ LT + L EL+ VKQ + KLEE
Sbjct: 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66
Query: 448 IKALNTE 454
+ L E
Sbjct: 67 NRELEEE 73
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 27.6 bits (62), Expect = 7.9
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
NA +++ E+ ++D + +I+L
Sbjct: 42 NAQNPELL--------DELDAAWTRAAEDNDVSVIVLRA 72
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 27.5 bits (62), Expect = 8.2
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
N + + +K+ L + D + +++ G
Sbjct: 22 NPFSRTLE--------TSVKDALARANADDSVRAVVVYG 52
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 27.5 bits (62), Expect = 8.9
Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
N+L ++ +E++ +L +++ ++++LTG
Sbjct: 31 NSLSLALL--------EELQNILTQINEEANTRVVILTG 61
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 27.6 bits (62), Expect = 8.9
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 387 NALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMILLTG 425
N + +M +E++ VL + D ++I+ +
Sbjct: 30 NVIGATMM--------RELRTVLTTLADDSSVRVIVFSS 60
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 27.9 bits (63), Expect = 9.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 392 QIMNREARRLDKEIKEVLE------DYSQDQEKKMILLTGRRVTLAEELKRVKQIQEKLE 445
+ +N+ L ++ KE E +S D++ + + LT R + L EEL + I ++ E
Sbjct: 229 KRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGE 288
Query: 446 EFIKALNTE 454
N
Sbjct: 289 SLYSPANIM 297
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,128,255
Number of extensions: 426552
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 89
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)