RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7859
         (455 letters)



>d1hula_ a.26.1.2 (A:) Interleukin-5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 108

 Score = 28.7 bits (64), Expect = 0.46
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 423 LTGRRVTLAEELKRVKQIQEKLEEFIKALNTE 454
           + G++    EE +RV Q  + L+EF+  +NTE
Sbjct: 75  IDGQKKKCGEERRRVNQFLDYLQEFLGVMNTE 106


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 26.6 bits (58), Expect = 7.4
 Identities = 33/294 (11%), Positives = 82/294 (27%), Gaps = 44/294 (14%)

Query: 164 IQSLAKALDCKKGF-YMDGVTLSSQVTTRNLSFAVSECFWKMVRETVEQQADAFKATRFN 222
           I  L   L        + G T + +      +F +S    ++ + T+    +   A +  
Sbjct: 20  IAKLVDGLRRGVKHQTLLGATGTGK------TFTISNVIAQVNKPTLVIAHNKTLAGQ-- 71

Query: 223 LETEWKNSFPR---IRELDRDELFEKARGEILDEIVNLSQVSVQHWEEVLLTQLWNKVSN 279
           L +E K  FP       +   +  +        +        +    + L     + +  
Sbjct: 72  LYSELKEFFPHNAVEYFVSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFE 131

Query: 280 YVFETIYLPAAQSGNTNAFNTQMDIKLRQWADQQLPLQSIEAGWEVLKAEFVNFFEKEKN 339
                I    +      +     ++ +      ++   ++      ++ +  +   +   
Sbjct: 132 RRDVIIVASVSCIYGLGSPEEYRELVVSLRVGMEIERNALLRRLVDIQYDRNDIDFRRGT 191

Query: 340 SKDHDGIFDNLKAAVIEEALRRHSWEHK----DCCDVVLF-------------------- 375
            +    + +   A+  E  +R   +  +       D +                      
Sbjct: 192 FRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEVLGEREHVAIFPASHFVTR 251

Query: 376 --------WRIQQMLKVTSNALRQQIMNREARRLDKEIKEVLEDYSQDQEKKMI 421
                     I+Q L+     LR Q    EA+RL++  +  LE   +      I
Sbjct: 252 EEKMRLAIQNIEQELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGI 305


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,759,115
Number of extensions: 83718
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 21
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)