BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy786
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 213 bits (542), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 112/141 (79%)
Query: 16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
WAEAG +EL NLRKI SDL+GHP P+ F DV TGSLGQGL A GMAY GKYFDKA
Sbjct: 82 WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 141
Query: 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL I DINRLGQS+P LQHQ ++Y+KR
Sbjct: 142 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 201
Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
+AFG++A++VDGH VE L K
Sbjct: 202 CEAFGWHAIIVDGHSVEELCK 222
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 213 bits (541), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 96/141 (68%), Positives = 112/141 (79%)
Query: 16 WAEAGLFPVSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDKA 75
WAEAG +EL NLRKI SDL+GHP P+ F DV TGSLGQGL A GMAY GKYFDKA
Sbjct: 84 WAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKA 143
Query: 76 SYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKR 135
SYR YCL+GDGE +EGS+WEA+ FAS YKLDNL I DINRLGQS+P LQHQ ++Y+KR
Sbjct: 144 SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKR 203
Query: 136 LDAFGFNAVVVDGHDVEHLVK 156
+AFG++A++VDGH VE L K
Sbjct: 204 CEAFGWHAIIVDGHSVEELCK 224
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form)
And Magnesium Ion
pdb|3M34|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamin
D And Calcium Ion
pdb|3M6L|A Chain A, Crystal Structure Of Transketolase In Complex With
Thiamine Diphosphate, Ribose-5-Phosphate And Calcium Ion
Length = 635
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 24 VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASY 77
+ +LKN R++ S GHP +++ TG LGQG++ A G A K D +
Sbjct: 88 LEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDH 147
Query: 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137
+ YCL GDG+ EG +EA A +KLDN +I+D N + L V + R +
Sbjct: 148 KIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENV-KXRFE 206
Query: 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173
A GF + ++GHD E + K + C+ I +
Sbjct: 207 AQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAK 242
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 632
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 7/156 (4%)
Query: 24 VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF------DKASY 77
+ +LKN R++ S GHP +++ TG LGQG++ A G A K D +
Sbjct: 85 LEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAXAAKKAQNLLGSDLIDH 144
Query: 78 RTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRKRLD 137
+ YCL GDG+ EG +EA A +KLDN +I+D N + L V + R +
Sbjct: 145 KIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENV-KXRFE 203
Query: 138 AFGFNAVVVDGHDVEHLVKVSSFKLQKAIGCVWIQR 173
A GF + ++GHD E + K + C+ I +
Sbjct: 204 AQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAK 239
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1TRK|B Chain B, Refined Structure Of Transketolase From Saccharomyces
Cerevisiae At 2.0 Angstroms Resolution
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-phosphate
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
Length = 680
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24 VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
+ +LK R++ S GHP L ++V TG LGQG+S A GMA Y F
Sbjct: 87 IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 146
Query: 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
+ TY +GDG EG EA A + KL NL I+D N++ TS+ +V K
Sbjct: 147 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 205
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
R +A+G+ + V+ D+ + K ++ KL K
Sbjct: 206 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24 VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
+ +LK R++ S GHP L ++V TG LGQG+S A GMA Y F
Sbjct: 87 IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 146
Query: 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
+ TY +GDG EG EA A + KL NL I+D N++ TS+ +V K
Sbjct: 147 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 205
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
R +A+G+ + V+ D+ + K ++ KL K
Sbjct: 206 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 238
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKA|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKB|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
pdb|1TKC|B Chain B, Specificity Of Coenzyme Binding In Thiamin Diphosphate
Dependent Enzymes: Crystal Structures Of Yeast
Transketolase In Complex With Analogs Of Thiamin
Diphosphate
Length = 678
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 24 VSELKNLRKIDSDLEGHPTPRLNFIDVGTGSLGQGLSVAAGMA---------YVGKYFDK 74
+ +LK R++ S GHP L ++V TG LGQG+S A GMA Y F
Sbjct: 85 IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTL 144
Query: 75 ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVYRK 134
+ TY +GDG EG EA A + KL NL I+D N++ TS+ +V K
Sbjct: 145 SDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISFDEDV-AK 203
Query: 135 RLDAFGFNAVVVD--GHDVEHLVK-VSSFKLQK 164
R +A+G+ + V+ D+ + K ++ KL K
Sbjct: 204 RYEAYGWEVLYVENGNEDLAGIAKAIAQAKLSK 236
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 70.1 bits (170), Expect = 6e-13, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 22 FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
P+ ELK+ R+ S GHP TP ++V TG LGQG+S A G+A + F+
Sbjct: 86 LPLEELKSFRQWGSKTPGHPERGHTPG---VEVTTGPLGQGISTAVGLALAERKLAAEFN 142
Query: 74 K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ 128
+ + TY L DG+ EG EA A ++ L L V +D NR+ PT L
Sbjct: 143 RPGHVVVDHYTYVLASDGDLXEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF- 201
Query: 129 TEVYRKRLDAFGFNAV-VVDGHDVEHLVKVSSFKLQK 164
TE R A+G+ + V D +D+E L K + KL K
Sbjct: 202 TEDVLARYRAYGWQTLRVEDVNDLEALRK--AIKLAK 236
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 22 FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
P+ ELKN R++ S GHP TP ++ TG LGQGL+ A GMA + F+
Sbjct: 123 LPIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFN 179
Query: 74 K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG-QSEPTSLQH 127
+ + TY +GDG EG EA A KL+ L ++D N + + + H
Sbjct: 180 RDDAKIVDHHTYVFLGDGXLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFH 239
Query: 128 QTEVYRKRLDAFGFNAVV-VDGHDV 151
KR +A+G+N + V+GHDV
Sbjct: 240 DDT--PKRFEAYGWNVIPNVNGHDV 262
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 22 FPVSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAY----VGKYFD 73
P+ ELKN R++ S GHP TP ++ TG LGQGL+ A GMA + F+
Sbjct: 123 LPIEELKNFRQLHSKTPGHPEYGITPG---VETTTGPLGQGLANAVGMALGEALLAAEFN 179
Query: 74 K-----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLG-QSEPTSLQH 127
+ + TY +GDG EG EA A KL+ L ++D N + + + H
Sbjct: 180 RDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWFH 239
Query: 128 QTEVYRKRLDAFGFNAVV-VDGHDV 151
KR +A+G+N + V+GHDV
Sbjct: 240 DDT--PKRFEAYGWNVIPNVNGHDV 262
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 24 VSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMA----YVGKYFDKA 75
+ +LK R+ S GHP TP ++V TG LGQG++ A G+A ++ F++
Sbjct: 86 MDDLKGFRQDGSRTPGHPERFVTPG---VEVTTGPLGQGIANAVGLAIAEAHLAATFNRP 142
Query: 76 SYR-----TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
Y TY GDG EG EAL A + L+ L VI+D N + TSL +
Sbjct: 143 GYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSFTEQ 202
Query: 131 VYRKRLDAFGFNAVVVDGHDVEH 153
++K + A GF+ + V D ++
Sbjct: 203 CHQKYV-AMGFHVIEVKNGDTDY 224
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 14/144 (9%)
Query: 26 ELKNLRKIDSDLEGHPT-PRLNFIDVGTGSLGQGLSVAAGMAYVGKY----FDKASYR-- 78
+LKN R+ S GHP +D TG LGQG++ A G A ++ +++ +Y
Sbjct: 112 DLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGXAXAERHLAAKYNRDAYNIV 171
Query: 79 ---TYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQ-TEVYRK 134
TY + GDG+ EG EA A++ +L L V++D N + S L +E
Sbjct: 172 DHYTYAICGDGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDI--SLDGDLNRSFSESVED 229
Query: 135 RLDAFGFNAV-VVDGHDVEHLVKV 157
R A+G+ + V DG+D+E + K
Sbjct: 230 RYKAYGWQVIRVEDGNDIEAIAKA 253
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 22 FPVSELKNLRKIDSDLEGHP-TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYF-------- 72
P+ ELKN R++ S GHP + ++ TG LGQG++ A GMA K
Sbjct: 81 LPMEELKNFRQLHSKTPGHPEVGKTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPG 140
Query: 73 -DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
D + TY +GDG EG E A KL L +D N + S+ E
Sbjct: 141 HDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI------SIDGHVEG 194
Query: 132 Y-----RKRLDAFGFNAVV-VDGHDVEHLVKV 157
+ R +A+G++ + +DGHD + +
Sbjct: 195 WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRA 226
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 22/152 (14%)
Query: 22 FPVSELKNLRKIDSDLEGHPTPRLNF-IDVGTGSLGQGLSVAAGMAYVGKYF-------- 72
P+ ELKN R++ S GHP ++ TG LGQG++ A GMA K
Sbjct: 82 LPMEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPG 141
Query: 73 -DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEV 131
D + TY +GDG EG E A KL L +D N + S+ E
Sbjct: 142 HDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI------SIDGHVEG 195
Query: 132 Y-----RKRLDAFGFNAVV-VDGHDVEHLVKV 157
+ R +A+G++ + +DGHD + +
Sbjct: 196 WFTDDTAMRFEAYGWHVIRDIDGHDAASIKRA 227
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 24 VSELKNLRKIDSDLEGHPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKY----FDKAS-- 76
+S++++LR S GHP R +++ TG LGQGL+ A GMA +Y FD +
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEP 162
Query: 77 ------YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
+ Y + DG+ EG EA A+ +L NL V +D N++ + T++ E
Sbjct: 163 GASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIA-LCE 221
Query: 131 VYRKRLDAFGFNAVVVDG 148
R A+G++ V+G
Sbjct: 222 DTAARYRAYGWHVQEVEG 239
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp
pdb|1ITZ|B Chain B, Maize Transketolase In Complex With Tpp
pdb|1ITZ|C Chain C, Maize Transketolase In Complex With Tpp
Length = 675
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 26 ELKNLRKIDSDLEGHPTPRLNF----IDVGTGSLGQGLSVAAGMAYVGKY----FDKAS- 76
+LK R+ S GHP NF ++V TG LGQG++ A G+A K+ F+K
Sbjct: 99 DLKQFRQWGSRTPGHPE---NFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDS 155
Query: 77 ----YRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTEVY 132
+ TY ++GDG EG EA A ++ L L +D N + T + TE
Sbjct: 156 EIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDV 214
Query: 133 RKRLDAFGFNAVVVDGHDVEHLVKVSSFKLQKAI 166
R +A G++ + V + + ++ K KA+
Sbjct: 215 STRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV 248
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 24 VSELKNLRKIDSDLEGHP----TPRLNFIDVGTGSLGQGLSVAAGMAYVGKYFDK----- 74
+ ++KN R++ S GHP TP ++ TG LGQG++ A G A K
Sbjct: 86 IEDIKNFRQLHSKTPGHPEYGYTPG---VETTTGPLGQGVANAVGXALGEKLLSDRYNTP 142
Query: 75 ----ASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINRLGQSEPTSLQHQTE 130
+ TY +GDG EG EA A L+ L +D N + T ++
Sbjct: 143 DLKVIDHHTYVFLGDGXLXEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SD 201
Query: 131 VYRKRLDAFGFNAVV-VDGHD 150
+R A+G++ + VDGHD
Sbjct: 202 NTPERFRAYGWHVIENVDGHD 222
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
Q VA G+ GK KA TY GDG +++G +E ++FA +K + V+ + NR
Sbjct: 151 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 204
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
S P Q + ++ A G + VDG D
Sbjct: 205 FAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 238
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
Q VA G+ GK KA TY GDG +++G +E ++FA +K + V+ + NR
Sbjct: 151 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 204
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
S P Q + ++ A G + VDG D
Sbjct: 205 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 238
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
Q VA G+ GK KA TY GDG +++G +E ++FA +K + V+ + NR
Sbjct: 150 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGDFYEGINFAGAFKAPAIFVVQN-NR 203
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
S P Q + ++ A G + VDG D
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 237
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 57 QGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDINR 116
Q VA G+ GK KA TY GDG +++G+ ++ ++FA +K + V+ + NR
Sbjct: 150 QAAGVALGLKMRGK---KAVAITYT--GDGGTSQGNFYQGINFAGAFKAPAIFVVQN-NR 203
Query: 117 LGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHD 150
S P Q + ++ A G + VDG D
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMD 237
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP--CI 211
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 212 FICENNRYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRF 260
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP--CI 211
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 212 FICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRF 260
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP--CI 211
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 212 FICENNRYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRF 260
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 155 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP--CI 211
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 212 FICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRF 260
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNMAALWKLP--CI 194
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 195 FICENNRYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRF 243
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 51 GTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCV 110
G G +G + + AG+A KY K L GDG + +G I+EA + A+ +KL C+
Sbjct: 138 GNGIVGAQVPLGAGIALACKYNGKDEV-CLTLYGDGAANQGQIFEAYNXAALWKLP--CI 194
Query: 111 -IFDINRLGQSEPTSLQHQTEVYRKRLDAFGFNAVVVDGHDVEHLVKVSSF 160
I + NR G + Y KR D + VDG D+ + + + F
Sbjct: 195 FICENNRYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRF 243
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 20 GLFPVSELKNLRKI--DSDLEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYVGKYF--- 72
G +L N R+ + L +P P+L F T S+G G A A KY
Sbjct: 155 GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214
Query: 73 ---DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
D + Y +GDGE E A+ A+ KLDNL + + N
Sbjct: 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCN 260
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 20 GLFPVSELKNLRKI--DSDLEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYVGKYF--- 72
G +L N R+ + L +P P+L F T S+G G A A KY
Sbjct: 155 GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214
Query: 73 ---DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
D + Y +GDGE E A+ A+ KLDNL + + N
Sbjct: 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCN 260
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 20 GLFPVSELKNLRKI--DSDLEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYVGKYF--- 72
G +L N R+ + L +P P+L F T S+G G A A KY
Sbjct: 155 GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214
Query: 73 ---DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
D + Y +GDGE E A+ A+ KLDNL + + N
Sbjct: 215 GLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCN 260
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 20 GLFPVSELKNLRKI--DSDLEGHPTPRL--NFIDVGTGSLGQGLSVAAGMAYVGKYF--- 72
G +L N R+ + L +P P+L F T S+G G A A KY
Sbjct: 155 GRLTQEQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHR 214
Query: 73 ---DKASYRTYCLVGDGESAEGSIWEALHFASYYKLDNLCVIFDIN 115
D + Y +GDGE A+ A+ KLDNL + + N
Sbjct: 215 GLKDTSKQTVYAFLGDGEMDAPESKGAITIATREKLDNLVFVINCN 260
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 40 HPTPR-LNFIDVGTGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGSIWEALH 98
HP + LNF V + + + AAG A K + C GDG ++EG + ++
Sbjct: 131 HPGSKALNFFTVAS-PIASHVPPAAGAAISMKLL-RTGQVAVCTFGDGATSEGDWYAGIN 188
Query: 99 FASYYKLDNLCVIFDINRLGQSEPTSLQHQTE--VYRKRLDAFGFNAVVVDGHDV 151
FA+ + +F + +HQT + AFG +VDG DV
Sbjct: 189 FAA---VQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDV 240
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 40 HPTP-----RLNFIDVG--TGSLGQGLSVAAGMAYVGKYFDKASYRTYCLVGDGESAEGS 92
HP P + + VG + S+ G+ +A GK + RT C++GDG G
Sbjct: 105 HPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGK-----NRRTVCVIGDGAITAGX 159
Query: 93 IWEALHFASYYKLDNLCVIFD 113
+EA + A + D L ++ D
Sbjct: 160 AFEAXNHAGDIRPDXLVILND 180
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 81 CLVGDGESAEGSIWEALHFASYYKLDNLCVIF-DINRLGQSEPTSLQHQTEVYRKRLDAF 139
C G+G ++EG +FA+ L+ + F N S PTS Q++ + R +
Sbjct: 189 CYFGEGAASEGDAHAGFNFAA--TLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY 246
Query: 140 GFNAVVVDGHDVEHLVKVSSFKLQKAIG 167
G ++ VDG+DV + + ++A+
Sbjct: 247 GIMSIRVDGNDVFAVYNATKEARRRAVA 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,542,068
Number of Sequences: 62578
Number of extensions: 229283
Number of successful extensions: 498
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 49
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)